Pregenerated sensors for PARL (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033918

Ensembl transcript IDs: ENSMUST00000133153.2, ENSMUST00000136252.8, ENSMUST00000232484.2

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR TCA 90 bp	ATGATGGCTTTTAAGGCATTGCCCGCTGTGAAGGTGAAGACAGGGAGGAAGATGCTGCAAGCACAGTCATaGTTGCTCCCGATGCACCAA	+
Preference number: 2 (lower is better) Translates to: MMAFKALPAVKVKTGRKMLQAQS*LLPMHQ Trigger: TTGGTGCATCGGGAGCAATCATGACTGTGCTTGCAG...CATCTTCCTCCCTGTCTTCACCTTCACAGCGGGCAATGCCTTAAAAGCCATCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000136252.8 ENSMUST00000232484.2
3UTR-3UTR CAA 90 bp	GACGGCACTCTCCACAAGCAGAAGACGAGGGCATTCGCAGCTATGATGCCTTTTGAGGTTTCCTTCCTTTaGTGGCCGTATGCTGTCCAA	+
Preference number: 3 (lower is better) Translates to: DGTLHKQKTRAFAAMMPFEVSFL*WPYAVQ Trigger: TTGGACAGCATACGGCCACAAAAGGAAGGAAACCTC...AAAAGGCATCATAGCTGCGAATGCCCTCGTCTTCTGCTTGTGGAGAGTGCCGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133153.2
3UTR TCA 72 bp	ACACCTGCAGACAGATACACTGCCACAAACTGCTCCTaGCCCAGGATGTTCACGATGCTAGATGAGAAGCTC	+
Preference number: 3 (lower is better) Translates to: TPADRYTATNCS*PRMFTMLDEKL Trigger: GAGCTTCTCATCTAGCATCGTGAACATCCTGGGTCAGGAGCAGTTTGTGGCAGTGTATCTGTCTGCAGGTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136252.8
CDS-3UTR GCA 90 bp	ATGATGGCTTTTAAGGCATTGCCCGCTGTGAAGGTGAAGACAGGGAGGAAGATGCGCAGCTATGATGCCTaGGTCCAAGCAGCCGCGGGG	+
Preference number: 4 (lower is better) Translates to: MMAFKALPAVKVKTGRKMRSYDA*VQAAAG Trigger: CCCCGCGGCTGCTTGGACGCAGGCATCATAGCTGCG...CATCTTCCTCCCTGTCTTCACCTTCACAGCGGGCAATGCCTTAAAAGCCATCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232484.2
CDS-3UTR GCA 90 bp	GTTCGCTGCAGGGACGGCACTCTCCACAAGCAGAAGACGAGGGCATTCGCAGCTGGCACTTCTCTTATATaGTTCTCCACTCGACCCTGT	+
Preference number: 4 (lower is better) Translates to: VRCRDGTLHKQKTRAFAAGTSLI*FSTRPC Trigger: ACAGGGTCGAGTGGAGAAGCATATAAGAGAAGTGCC...AGCTGCGAATGCCCTCGTCTTCTGCTTGTGGAGAGTGCCGTCCCTGCAGCGAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000133153.2 ENSMUST00000136252.8
CDS-3UTR TCA 90 bp	ACCTGCAGACAGATACACTGCCACAAACTGCTCCTGACCCAGGATGTTCACGATACTCGACCCTGTGTCTaGTCTTCGAGGTTCAACCTT	+
Preference number: 4 (lower is better) Translates to: TCRQIHCHKLLLTQDVHDTRPCV*SSRFNL Trigger: AAGGTTGAACCTCGAAGATCAGACACAGGGTCGAGT...ATCGTGAACATCCTGGGTCAGGAGCAGTTTGTGGCAGTGTATCTGTCTGCAGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136252.8
CDS-3UTR TCA 90 bp	TCCTTTCTGAGGTTTCCTTCCTTTTGTGGCCGTATGCTGTCCAACCAGTCAGCTGCACAGCCCCAATGGTaGAGAAAAAGGGCTTCACGA	+
Preference number: 4 (lower is better) Translates to: SFLRFPSFCGRMLSNQSAAQPQW*RKRASR Trigger: TCGTGAAGCCCTTTTTCTTCACCATTGGGGCTGTGC...AGCTGACTGGTTGGACAGCATACGGCCACAAAAGGAAGGAAACCTCAGAAAGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000133153.2
CDS-3UTR TCA 90 bp	AAGCAGAAGACGAGGGCATTCGCAGCTATGATGCCTTTTGGTTTGATTTCTCTTACTCGACCCTGTGTCTaGTCTTCGAGGTTCAACCTT	+
Preference number: 4 (lower is better) Translates to: KQKTRAFAAMMPFGLISLTRPCV*SSRFNL Trigger: AAGGTTGAACCTCGAAGATCAGACACAGGGTCGAGT...AAGAGAAATCAAACCAAAAGGCATCATAGCTGCGAATGCCCTCGTCTTCTGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000133153.2 ENSMUST00000136252.8
CDS-3UTR GCA 90 bp	ATGATGGCTTTTAAGGCATTGCCCGCTGTGAAGGTGAAGACAGGGAGGAAGATGACAAAGAACCTTGGATaGTGGGTTGGATGTAAAGTA	+
Preference number: 4 (lower is better) Translates to: MMAFKALPAVKVKTGRKMTKNLG*WVGCKV Trigger: TACTTTACATCCAACCCAGCATCCAAGGTTCTTTGT...CATCTTCCTCCCTGTCTTCACCTTCACAGCGGGCAATGCCTTAAAAGCCATCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232484.2
CDS-3UTR GCA 90 bp	CAACATTGGAGAACAAAGAACCTTGGATGCTGGGTTGGATGTAAAGTATCTGATGGCACTTCTCTTATATaGTTCTCCACTCGACCCTGT	+
Preference number: 4 (lower is better) Translates to: QHWRTKNLGCWVGCKVSDGTSLI*FSTRPC Trigger: ACAGGGTCGAGTGGAGAAGCATATAAGAGAAGTGCC...ATCAGATACTTTACATCCAACCCAGCATCCAAGGTTCTTTGTTCTCCAATGTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000133153.2 ENSMUST00000136252.8
CDS TCA 90 bp	GGGACGGCACTCTCCACAAGCAGAAGACGAGGGCATTCGCAGCTATaGTGCCTGCGTCCAAGCAGCCGCGGGGCCTGGGTCGCAGAGAGC	+
Preference number: 5 (lower is better) Translates to: GTALSTSRRRGHSQL*CLRPSSRGAWVAES Trigger: GCTCTCTGCGACCCAGGCCCCGCGGCTGCTTGGACGCAGGCATCATAGCTGCGAATGCCCTCGTCTTCTGCTTGTGGAGAGTGCCGTCCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232484.2
CDS GCA 90 bp	CACTCTCCACAAGCAGAAGACGAGGGCATTCGCAGCTATGATGCCTaGGTCCAAGCAGCCGCGGGGCCTGGGTCGCAGAGAGCTCCCGGT	+
Preference number: 5 (lower is better) Translates to: HSPQAEDEGIRSYDA*VQAAAGPGSQRAPG Trigger: ACCGGGAGCTCTCTGCGACCCAGGCCCCGCGGCTGCTTGGACGCAGGCATCATAGCTGCGAATGCCCTCGTCTTCTGCTTGTGGAGAGTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232484.2
CDS-3UTR CAA 90 bp	ATCATGGTTCGCTGCAGGGACGGCACTCTCCACAAGCAGAAGACGAGGGCATTCGAGGTTTCCTTCCTTTaGTGGCCGTATGCTGTCCAA	+
Preference number: 5 (lower is better) Translates to: IMVRCRDGTLHKQKTRAFEVSFL*WPYAVQ Trigger: TTGGACAGCATACGGCCACAAAAGGAAGGAAACCTC...GAATGCCCTCGTCTTCTGCTTGTGGAGAGTGCCGTCCCTGCAGCGAACCATGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136252.8
CDS-3UTR CAA 90 bp	ACCTGCAGACAGATACACTGCCACAAACTGCTCCTGACCCAGGATGTTCACGATACCTTGGATGCTGGGTaGGATGTAAAGTATCTGATC	+
Preference number: 5 (lower is better) Translates to: TCRQIHCHKLLLTQDVHDTLDAG*DVKYLI Trigger: GATCAGATACTTTACATCCAACCCAGCATCCAAGGT...ATCGTGAACATCCTGGGTCAGGAGCAGTTTGTGGCAGTGTATCTGTCTGCAGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000232484.2
CDS TCA 72 bp	CTCTCCACAAGCAGAAGACGAGGGCATTCGCAGCTATaGTGCCTGCGTCCAAGCAGCCGCGGGGCCTGGGTC	+
Preference number: 6 (lower is better) Translates to: LSTSRRRGHSQL*CLRPSSRGAWV Trigger: GACCCAGGCCCCGCGGCTGCTTGGACGCAGGCATCATAGCTGCGAATGCCCTCGTCTTCTGCTTGTGGAGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232484.2
CDS GCA 72 bp	CAAGCAGAAGACGAGGGCATTCGCAGCTATGATGCCTaGGTCCAAGCAGCCGCGGGGCCTGGGTCGCAGAGA	+
Preference number: 6 (lower is better) Translates to: QAEDEGIRSYDA*VQAAAGPGSQR Trigger: TCTCTGCGACCCAGGCCCCGCGGCTGCTTGGACGCAGGCATCATAGCTGCGAATGCCCTCGTCTTCTGCTTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232484.2