RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PARD6B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044641

Ensembl transcript IDs: ENSMUST00000052125.7

Found 80 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCGCAGCTCGGCTCAGGCAGGTCTCAGTTTCAGAGCAGCAGCACCTaGTCCGTGTCACGGCAGCCTGCCTCGGCAGACTCCCAGCCCAGC +
Preference number: 1 (lower is better)
Translates to: PQLGSGRSQFQSSST*SVSRQPASADSQPS
Trigger: GCTGGGCTGGGAGTCTGCCGAGGCAGGCTGCCGTGACACGGAGCAGGTGCTGCTGCTCTGAAACTGAGACCTGCCTGAGCCGAGCTGCGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR CCA 90 bp ATGATCAGACTTCACAGAGGGCAAGGAGCGGGCTCTGCAGGCAGGTaGACACCGGCCACCGCAGCTCGGCTCAGGCAGGTCTCAGTTTCA +
Preference number: 1 (lower is better)
Translates to: MIRLHRGQGAGSAGR*TPATAARLRQVSVS
Trigger: TGAAACTGAGACCTGCCTGAGCCGAGCTGCGGTGGCCGGTGTCCACCTGCCTGCAGAGCCCGCTCCTTGCCCTCTGTGAAGTCTGATCAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR CCA 90 bp TCCCCCTCAGAGCCTTGGGCCTCAGGGAAGTCTGAGCCACACACGTaGGTCTCGCTGACTGTGCATGCAACAGGAGGGAGCCAGGTAAGG +
Preference number: 1 (lower is better)
Translates to: SPSEPWASGKSEPHT*VSLTVHATGGSQVR
Trigger: CCTTACCTGGCTCCCTCCTGTTGCATGCACAGTCAGCGAGACCCACGTGTGTGGCTCAGACTTCCCTGAGGCCCAAGGCTCTGAGGGGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR TCA 90 bp CAGGGTCTGGGAATCGAAGAACCGAGGTCCCCAGTGGCTAGCAGATaGTCAGACTTCACAGAGGGCAAGGAGCGGGCTCTGCAGGCAGGT +
Preference number: 1 (lower is better)
Translates to: QGLGIEEPRSPVASR*SDFTEGKERALQAG
Trigger: ACCTGCCTGCAGAGCCCGCTCCTTGCCCTCTGTGAAGTCTGATCATCTGCTAGCCACTGGGGACCTCGGTTCTTCGATTCCCAGACCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR GCA 90 bp CTGAGCCCATGCACCCCTAAGTTACATATGCAACTGAGCCTTCTGTaGCTATGGCTGCCTTCCACTGCAGGGAGCGCAGTGTCAGAGGGG +
Preference number: 1 (lower is better)
Translates to: LSPCTPKLHMQLSLL*LWLPSTAGSAVSEG
Trigger: CCCCTCTGACACTGCGCTCCCTGCAGTGGAAGGCAGCCATAGGCACAGAAGGCTCAGTTGCATATGTAACTTAGGGGTGCATGGGCTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR CCA 90 bp CCATGCACCCCTAAGTTACATATGCAACTGAGCCTTCTGTGCCTATaGCTGCCTTCCACTGCAGGGAGCGCAGTGTCAGAGGGGGAGCGA +
Preference number: 1 (lower is better)
Translates to: PCTPKLHMQLSLLCL*LPSTAGSAVSEGER
Trigger: TCGCTCCCCCTCTGACACTGCGCTCCCTGCAGTGGAAGGCAGCCATAGGCACAGAAGGCTCAGTTGCATATGTAACTTAGGGGTGCATGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR GCA 90 bp GCACCCAGCCTCCGCCAGGCGCCTGCAGATAACTCGCTCAGTCAGTaGCCTTCATTGGATCAAGACTTCATTTCTGCCGGCTCTTACTAC +
Preference number: 1 (lower is better)
Translates to: APSLRQAPADNSLSQ*PSLDQDFISAGSYY
Trigger: GTAGTAAGAGCCGGCAGAAATGAAGTCTTGATCCAATGAAGGGCACTGACTGAGCGAGTTATCTGCAGGCGCCTGGCGGAGGCTGGGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR CCA 90 bp AAGTCAGAAAACAGGGTCTGGGAATCGAAGAACCGAGGTCCCCAGTaGCTAGCAGATGATCAGACTTCACAGAGGGCAAGGAGCGGGCTC +
Preference number: 1 (lower is better)
Translates to: KSENRVWESKNRGPQ*LADDQTSQRARSGL
Trigger: GAGCCCGCTCCTTGCCCTCTGTGAAGTCTGATCATCTGCTAGCCACTGGGGACCTCGGTTCTTCGATTCCCAGACCCTGTTTTCTGACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR CCA 90 bp AGTCTCTTAACCTGGGGGCATTTTTATCCCATGATCCACACTGTCTaGTACACTGAAGAGTGTGGGAGTCAACTAACTATGCTATCACCT +
Preference number: 1 (lower is better)
Translates to: SLLTWGHFYPMIHTV*YTEECGSQLTMLSP
Trigger: AGGTGATAGCATAGTTAGTTGACTCCCACACTCTTCAGTGTACCAGACAGTGTGGATCATGGGATAAAAATGCCCCCAGGTTAAGAGACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR CAA 90 bp CACGGCAGCCTGCCTCGGCAGACTCCCAGCCCAGCCCGGCCACACTaGTTGTGGAACATCAGGGCCTGCAGGTCCACAGTGTCAGTCATG +
Preference number: 2 (lower is better)
Translates to: HGSLPRQTPSPARPH*LWNIRACRSTVSVM
Trigger: CATGACTGACACTGTGGACCTGCAGGCCCTGATGTTCCACAACAAGTGTGGCCGGGCTGGGCTGGGAGTCTGCCGAGGCAGGCTGCCGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR CAA 90 bp GGCAGCCTGCCTCGGCAGACTCCCAGCCCAGCCCGGCCACACTTGTaGTGGAACATCAGGGCCTGCAGGTCCACAGTGTCAGTCATGTGT +
Preference number: 2 (lower is better)
Translates to: GSLPRQTPSPARPHL*WNIRACRSTVSVMC
Trigger: ACACATGACTGACACTGTGGACCTGCAGGCCCTGATGTTCCACAACAAGTGTGGCCGGGCTGGGCTGGGAGTCTGCCGAGGCAGGCTGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR-3UTR CCA 90 bp AGGCAGGTCTCAGTTTCAGAGCAGCAGCACCTGCTCCGTGTCACGGCAGCCTGCCGGCCACACTTGTTGTaGAACATCAGGGCCTGCAGG +
Preference number: 2 (lower is better)
Translates to: RQVSVSEQQHLLRVTAACRPHLL*NIRACR
Trigger: CCTGCAGGCCCTGATGTTCCACAACAAGTGTGGCCG...GCAGGCTGCCGTGACACGGAGCAGGTGCTGCTGCTCTGAAACTGAGACCTGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR-3UTR CCA 90 bp CATCTGGTTGACATGGCGGACTTAGGACAGAACAGAATTCACAGTGAGGCTCGAGGCTCTGCAGGCAGGTaGACACCGGCCACCGCAGCT +
Preference number: 2 (lower is better)
Translates to: HLVDMADLGQNRIHSEARGSAGR*TPATAA
Trigger: AGCTGCGGTGGCCGGTGTCCACCTGCCTGCAGAGCC...TCGAGCCTCACTGTGAATTCTGTTCTGTCCTAAGTCCGCCATGTCAACCAGATG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR-3UTR CCA 90 bp CACAGGCTCACTGCACCCAGCCTCCGCCAGGCGCCTGCAGATAACTCGCTCAGTATGATCCACACTGTCTaGTACACTGAAGAGTGTGGG +
Preference number: 2 (lower is better)
Translates to: HRLTAPSLRQAPADNSLSMIHTV*YTEECG
Trigger: CCCACACTCTTCAGTGTACCAGACAGTGTGGATCAT...ACTGAGCGAGTTATCTGCAGGCGCCTGGCGGAGGCTGGGTGCAGTGAGCCTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR-3UTR GCA 90 bp CACCCAGCCTCCGCCAGGCGCCTGCAGATAACTCGCTCAGTCAGTGCCCTTCATACACATGCGCACACGTaGACAGCACACACTGAAATA +
Preference number: 2 (lower is better)
Translates to: HPASARRLQITRSVSALHTHAHT*TAHTEI
Trigger: TATTTCAGTGTGTGCTGTGCACGTGTGCGCATGTGT...ATGAAGGGCACTGACTGAGCGAGTTATCTGCAGGCGCCTGGCGGAGGCTGGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR-3UTR GCA 90 bp CACAGGCTCACTGCACCCAGCCTCCGCCAGGCGCCTGCAGATAACTCGCTCAGTAGTGTCAGTCATGTGTaGACACCAACATTGTTCCTT +
Preference number: 2 (lower is better)
Translates to: HRLTAPSLRQAPADNSLSSVSHV*TPTLFL
Trigger: AAGGAACAATGTTGGTGTGCACACATGACTGACACT...ACTGAGCGAGTTATCTGCAGGCGCCTGGCGGAGGCTGGGTGCAGTGAGCCTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR-3UTR CCA 90 bp CCACACACGTGGGTCTCGCTGACTGTGCATGCAACAGGAGGGAGCCAGGTAAGGGTAAGTCTCTTAACCTaGGGGCATTTTTATCCCATG +
Preference number: 2 (lower is better)
Translates to: PHTWVSLTVHATGGSQVRVSLLT*GHFYPM
Trigger: CATGGGATAAAAATGCCCCCAGGTTAAGAGACTTAC...CCTTACCTGGCTCCCTCCTGTTGCATGCACAGTCAGCGAGACCCACGTGTGTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR-3UTR TCA 90 bp CATCTGGTTGACATGGCGGACTTAGGACAGAACAGAATTCACAGTGAGGCTCGATCCACTGGACTGGAATaGAGGACTATGGCACCCCGA +
Preference number: 2 (lower is better)
Translates to: HLVDMADLGQNRIHSEARSTGLE*RTMAPR
Trigger: TCGGGGTGCCATAGTCCTTCATTCCAGTCCAGTGGA...TCGAGCCTCACTGTGAATTCTGTTCTGTCCTAAGTCCGCCATGTCAACCAGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR-3UTR TCA 90 bp ATCAAGACTTCATTTCTGCCGGCTCTTACTACGAGGAAAAAGTCCTTCAACTCGGTCAGTACACACCTATaGGGCACCCACACTCGGCCA +
Preference number: 2 (lower is better)
Translates to: IKTSFLPALTTRKKSFNSVSTHL*GTHTRP
Trigger: TGGCCGAGTGTGGGTGCCTCATAGGTGTGTACTGAC...CGAGTTGAAGGACTTTTTCCTCGTAGTAAGAGCCGGCAGAAATGAAGTCTTGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR-3UTR CCA 90 bp GACTTAGGACAGAACAGAATTCACAGTGAGGCTCGACGTTCGGGACAACAGAACTCAGAAAACAGGGTCTaGGAATCGAAGAACCGAGGT +
Preference number: 2 (lower is better)
Translates to: DLGQNRIHSEARRSGQQNSENRV*ESKNRG
Trigger: ACCTCGGTTCTTCGATTCCCAGACCCTGTTTTCTGA...GTTCTGTTGTCCCGAACGTCGAGCCTCACTGTGAATTCTGTTCTGTCCTAAGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR-3UTR CCA 90 bp CCGTGTGAGAGGAGAAACTCAGTGAATTCAACAGTCACAGGCTCACTGCACCCATGGAATGAAGGACTATaGCACCCCGAAACTGTAAAG +
Preference number: 2 (lower is better)
Translates to: PCERRNSVNSTVTGSLHPWNEGL*HPETVK
Trigger: CTTTACAGTTTCGGGGTGCCATAGTCCTTCATTCCA...TGGGTGCAGTGAGCCTGTGACTGTTGAATTCACTGAGTTTCTCCTCTCACACGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR-3UTR CCA 90 bp AGCACTGCTAGCAAGCGGTGGGTGCCGTGTGAGAGGAGAAACTCAGTGAATTCAGTCAGTGCCCTTCATTaGATCAAGACTTCATTTCTG +
Preference number: 2 (lower is better)
Translates to: STASKRWVPCERRNSVNSVSALH*IKTSFL
Trigger: CAGAAATGAAGTCTTGATCCAATGAAGGGCACTGAC...TGAATTCACTGAGTTTCTCCTCTCACACGGCACCCACCGCTTGCTAGCAGTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR GCA 72 bp GGCTCAGGCAGGTCTCAGTTTCAGAGCAGCAGCACCTaGTCCGTGTCACGGCAGCCTGCCTCGGCAGACTCC +
Preference number: 3 (lower is better)
Translates to: GSGRSQFQSSST*SVSRQPASADS
Trigger: GGAGTCTGCCGAGGCAGGCTGCCGTGACACGGAGCAGGTGCTGCTGCTCTGAAACTGAGACCTGCCTGAGCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR GCA 72 bp GCAACTGAGCCTTCTGTGCCTATGGCTGCCTTCCACTaGAGGGAGCGCAGTGTCAGAGGGGGAGCGAGGGGG +
Preference number: 3 (lower is better)
Translates to: ATEPSVPMAAFH*RERSVRGGARG
Trigger: CCCCCTCGCTCCCCCTCTGACACTGCGCTCCCTGCAGTGGAAGGCAGCCATAGGCACAGAAGGCTCAGTTGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR CCA 72 bp CGGCAGACTCCCAGCCCAGCCCGGCCACACTTGTTGTaGAACATCAGGGCCTGCAGGTCCACAGTGTCAGTC +
Preference number: 3 (lower is better)
Translates to: RQTPSPARPHLL*NIRACRSTVSV
Trigger: GACTGACACTGTGGACCTGCAGGCCCTGATGTTCCACAACAAGTGTGGCCGGGCTGGGCTGGGAGTCTGCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR CCA 72 bp GAGCCTTGGGCCTCAGGGAAGTCTGAGCCACACACGTaGGTCTCGCTGACTGTGCATGCAACAGGAGGGAGC +
Preference number: 3 (lower is better)
Translates to: EPWASGKSEPHT*VSLTVHATGGS
Trigger: GCTCCCTCCTGTTGCATGCACAGTCAGCGAGACCCACGTGTGTGGCTCAGACTTCCCTGAGGCCCAAGGCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR TCA 72 bp GGAATCGAAGAACCGAGGTCCCCAGTGGCTAGCAGATaGTCAGACTTCACAGAGGGCAAGGAGCGGGCTCTG +
Preference number: 3 (lower is better)
Translates to: GIEEPRSPVASR*SDFTEGKERAL
Trigger: CAGAGCCCGCTCCTTGCCCTCTGTGAAGTCTGATCATCTGCTAGCCACTGGGGACCTCGGTTCTTCGATTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR TCA 72 bp GCAAGCGGTGGGTGCCGTGTGAGAGGAGAAACTCAGTaGATTCAACAGTCACAGGCTCACTGCACCCAGCCT +
Preference number: 3 (lower is better)
Translates to: ASGGCRVRGETQ*IQQSQAHCTQP
Trigger: AGGCTGGGTGCAGTGAGCCTGTGACTGTTGAATTCACTGAGTTTCTCCTCTCACACGGCACCCACCGCTTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR GCA 72 bp CATGCAACAGGAGGGAGCCAGGTAAGGGAAGACAACTaGGGTCCCCTCATCCCAAATGGACGCACAGAAGAG +
Preference number: 3 (lower is better)
Translates to: HATGGSQVREDN*GPLIPNGRTEE
Trigger: CTCTTCTGTGCGTCCATTTGGGATGAGGGGACCGCAGTTGTCTTCCCTTACCTGGCTCCCTCCTGTTGCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR GCA 72 bp CTCCGCCAGGCGCCTGCAGATAACTCGCTCAGTCAGTaGCCTTCATTGGATCAAGACTTCATTTCTGCCGGC +
Preference number: 3 (lower is better)
Translates to: LRQAPADNSLSQ*PSLDQDFISAG
Trigger: GCCGGCAGAAATGAAGTCTTGATCCAATGAAGGGCACTGACTGAGCGAGTTATCTGCAGGCGCCTGGCGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR CCA 72 bp CGCCTGCAGATAACTCGCTCAGTCAGTGCCCTTCATTaGATCAAGACTTCATTTCTGCCGGCTCTTACTACG +
Preference number: 3 (lower is better)
Translates to: RLQITRSVSALH*IKTSFLPALTT
Trigger: CGTAGTAAGAGCCGGCAGAAATGAAGTCTTGATCCAATGAAGGGCACTGACTGAGCGAGTTATCTGCAGGCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR TCA 72 bp CACACACACACATGCGCACACGTGCACAGCACACACTaGAATAATCTCCACTGGACTGGAATGAAGGACTAT +
Preference number: 3 (lower is better)
Translates to: HTHTCAHVHSTH*NNLHWTGMKDY
Trigger: ATAGTCCTTCATTCCAGTCCAGTGGAGATTATTTCAGTGTGTGCTGTGCACGTGTGCGCATGTGTGTGTGTG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR-3UTR CAA 90 bp GACTTAGGACAGAACAGAATTCACAGTGAGGCTCGACGTTCGGGACAACAGAACGAAGGTCTACTGACATaGACTTCATTGGTACGACCT +
Preference number: 3 (lower is better)
Translates to: DLGQNRIHSEARRSGQQNEGLLT*TSLVRP
Trigger: AGGTCGTACCAATGAAGTCAATGTCAGTAGACCTTC...GTTCTGTTGTCCCGAACGTCGAGCCTCACTGTGAATTCTGTTCTGTCCTAAGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR CCA 72 bp ACCTGGGGGCATTTTTATCCCATGATCCACACTGTCTaGTACACTGAAGAGTGTGGGAGTCAACTAACTATG +
Preference number: 3 (lower is better)
Translates to: TWGHFYPMIHTV*YTEECGSQLTM
Trigger: CATAGTTAGTTGACTCCCACACTCTTCAGTGTACCAGACAGTGTGGATCATGGGATAAAAATGCCCCCAGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR TCA 72 bp ACAGCACACACTGAAATAATCTCCACTGGACTGGAATaGAGGACTATGGCACCCCGAAACTGTAAAGTTCCA +
Preference number: 3 (lower is better)
Translates to: TAHTEIISTGLE*RTMAPRNCKVP
Trigger: TGGAACTTTACAGTTTCGGGGTGCCATAGTCCTTCATTCCAGTCCAGTGGAGATTATTTCAGTGTGTGCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR GCA 72 bp CAGTCAGTGCCCTTCATTGGATCAAGACTTCATTTCTaGCGGCTCTTACTACGAGGAAAAAGTCCTTCAACT +
Preference number: 3 (lower is better)
Translates to: QSVPFIGSRLHF*RLLLRGKSPST
Trigger: AGTTGAAGGACTTTTTCCTCGTAGTAAGAGCCGGCAGAAATGAAGTCTTGATCCAATGAAGGGCACTGACTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR GCA 72 bp GTATGTGAAATATCTTTACTTACAATGCTGAGCCCATaGACCCCTAAGTTACATATGCAACTGAGCCTTCTG +
Preference number: 3 (lower is better)
Translates to: VCEISLLTMLSP*TPKLHMQLSLL
Trigger: CAGAAGGCTCAGTTGCATATGTAACTTAGGGGTGCATGGGCTCAGCATTGTAAGTAAAGATATTTCACATAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR CAA 72 bp CTGCCTCGGCAGACTCCCAGCCCAGCCCGGCCACACTaGTTGTGGAACATCAGGGCCTGCAGGTCCACAGTG +
Preference number: 4 (lower is better)
Translates to: LPRQTPSPARPH*LWNIRACRSTV
Trigger: CACTGTGGACCTGCAGGCCCTGATGTTCCACAACAAGTGTGGCCGGGCTGGGCTGGGAGTCTGCCGAGGCAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS-3UTR CCA 90 bp GTCACGGCAGCCTGCCTCGGCAGACTCCCAGCCCAGCCCGGCCACACTTGTTGTGTGTCACTCGGACGCTaGAGCCATCCCGGATGTAGA +
Preference number: 4 (lower is better)
Translates to: VTAACLGRLPAQPGHTCCVSLGR*SHPGCR
Trigger: TCTACATCCGGGATGGCTCCAGCGTCCGAGTGACAC...ACAACAAGTGTGGCCGGGCTGGGCTGGGAGTCTGCCGAGGCAGGCTGCCGTGAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR CAA 72 bp CCTCGGCAGACTCCCAGCCCAGCCCGGCCACACTTGTaGTGGAACATCAGGGCCTGCAGGTCCACAGTGTCA +
Preference number: 4 (lower is better)
Translates to: PRQTPSPARPHL*WNIRACRSTVS
Trigger: TGACACTGTGGACCTGCAGGCCCTGATGTTCCACAACAAGTGTGGCCGGGCTGGGCTGGGAGTCTGCCGAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS-3UTR CCA 90 bp CACCCAGCCTCCGCCAGGCGCCTGCAGATAACTCGCTCAGTCAGTGCCCTTCATGGCCTCCACCTGCTGTaGGAAGCCCAGGAGGCTGTT +
Preference number: 4 (lower is better)
Translates to: HPASARRLQITRSVSALHGLHLL*EAQEAV
Trigger: AACAGCCTCCTGGGCTTCCCACAGCAGGTGGAGGCC...ATGAAGGGCACTGACTGAGCGAGTTATCTGCAGGCGCCTGGCGGAGGCTGGGTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS-3UTR TCA 90 bp GTCACGGCAGCCTGCCTCGGCAGACTCCCAGCCCAGCCCGGCCACACTTGTTGTATGCTGATGACGATGTaGGGCTTCTTCCGGTGGTTG +
Preference number: 4 (lower is better)
Translates to: VTAACLGRLPAQPGHTCCMLMTM*GFFRWL
Trigger: CAACCACCGGAAGAAGCCTCACATCGTCATCAGCAT...ACAACAAGTGTGGCCGGGCTGGGCTGGGAGTCTGCCGAGGCAGGCTGCCGTGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS-3UTR TCA 90 bp CCACACACGTGGGTCTCGCTGACTGTGCATGCAACAGGAGGGAGCCAGGTAAGGACCAGGCTCGTGTCCTaGGGAGGGGAGAACCCGTTC +
Preference number: 4 (lower is better)
Translates to: PHTWVSLTVHATGGSQVRTRLVS*GGENPF
Trigger: GAACGGGTTCTCCCCTCCTCAGGACACGAGCCTGGT...CCTTACCTGGCTCCCTCCTGTTGCATGCACAGTCAGCGAGACCCACGTGTGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS-3UTR CCA 90 bp TCGCTGACTGTGCATGCAACAGGAGGGAGCCAGGTAAGGGAAGACAACTGCGGTTCCTCGTCGCTGTCCTaGTCCTCGGGCTCGAAGCTG +
Preference number: 4 (lower is better)
Translates to: SLTVHATGGSQVREDNCGSSSLS*SSGSKL
Trigger: CAGCTTCGAGCCCGAGGACCAGGACAGCGACGAGGA...ACCGCAGTTGTCTTCCCTTACCTGGCTCCCTCCTGTTGCATGCACAGTCAGCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS-3UTR GCA 90 bp AGGTGTCGCTCCAGGGCCAGGGGAAAGGCCCCTAGACATGGCCAGCTAAAGTTTAAGCTGAGCTCGATCTaGGTCAGGGACTCCAGGCTC +
Preference number: 4 (lower is better)
Translates to: RCRSRARGKAPRHGQLKFKLSSI*VRDSRL
Trigger: GAGCCTGGAGTCCCTGACGCAGATCGAGCTCAGCTT...AAACTTTAGCTGGCCATGTCTAGGGGCCTTTCCCCTGGCCCTGGAGCGACACCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS-3UTR GCA 90 bp AGCACTGCTAGCAAGCGGTGGGTGCCGTGTGAGAGGAGAAACTCAGTGAATTCATCTTCACCTCCATGGTaGCCAGGCAGCCGCTGCTCG +
Preference number: 4 (lower is better)
Translates to: STASKRWVPCERRNSVNSSSPPW*PGSRCS
Trigger: CGAGCAGCGGCTGCCTGGGCACCATGGAGGTGAAGA...TGAATTCACTGAGTTTCTCCTCTCACACGGCACCCACCGCTTGCTAGCAGTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS-3UTR GCA 90 bp CACCCAGCCTCCGCCAGGCGCCTGCAGATAACTCGCTCAGTCAGTGCCCTTCATACTCAGCTCCAAACTTaGTCTTCACCTCCATGGTGC +
Preference number: 4 (lower is better)
Translates to: HPASARRLQITRSVSALHTQLQT*SSPPWC
Trigger: GCACCATGGAGGTGAAGAGCAAGTTTGGAGCTGAGT...ATGAAGGGCACTGACTGAGCGAGTTATCTGCAGGCGCCTGGCGGAGGCTGGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS-3UTR GCA 90 bp GACTTAGGACAGAACAGAATTCACAGTGAGGCTCGACGTTCGGGACAACAGAACCAGCTAGCAGGCCCGTaGTCTGGGCCAGACCCCCAG +
Preference number: 4 (lower is better)
Translates to: DLGQNRIHSEARRSGQQNQLAGP*SGPDPQ
Trigger: CTGGGGGTCTGGCCCAGAGCACGGGCCTGCTAGCTG...GTTCTGTTGTCCCGAACGTCGAGCCTCACTGTGAATTCTGTTCTGTCCTAAGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS-3UTR GCA 90 bp CCGTGTGAGAGGAGAAACTCAGTGAATTCAACAGTCACAGGCTCACTGCACCCAAAGCTGGCCTCCACCTaGTGTGGGAAGCCCAGGAGG +
Preference number: 4 (lower is better)
Translates to: PCERRNSVNSTVTGSLHPKLAST*CGKPRR
Trigger: CCTCCTGGGCTTCCCACAGCAGGTGGAGGCCAGCTT...TGGGTGCAGTGAGCCTGTGACTGTTGAATTCACTGAGTTTCTCCTCTCACACGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS-3UTR TCA 90 bp CATCTGGTTGACATGGCGGACTTAGGACAGAACAGAATTCACAGTGAGGCTCGACACGTCGATGATGGATaGCACGGGCCGGAAGTCCTG +
Preference number: 4 (lower is better)
Translates to: HLVDMADLGQNRIHSEARHVDDG*HGPEVL
Trigger: CAGGACTTCCGGCCCGTGTCATCCATCATCGACGTG...TCGAGCCTCACTGTGAATTCTGTTCTGTCCTAAGTCCGCCATGTCAACCAGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS-3UTR TCA 90 bp CCGTGTGAGAGGAGAAACTCAGTGAATTCAACAGTCACAGGCTCACTGCACCCAACATTGGGGATCTTGTaGACATGTTGCAGCAGTCCG +
Preference number: 4 (lower is better)
Translates to: PCERRNSVNSTVTGSLHPTLGIL*TCCSSP
Trigger: CGGACTGCTGCAACATGTTCACAAGATCCCCAATGT...TGGGTGCAGTGAGCCTGTGACTGTTGAATTCACTGAGTTTCTCCTCTCACACGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS-3UTR GCA 90 bp GACTTAGGACAGAACAGAATTCACAGTGAGGCTCGACGTTCGGGACAACAGAACCAGAAGTCCGACTGTTaGGCACCACGTTGTTCCTCT +
Preference number: 4 (lower is better)
Translates to: DLGQNRIHSEARRSGQQNQKSDC*APRCSS
Trigger: AGAGGAACAACGTGGTGCGCAACAGTCGGACTTCTG...GTTCTGTTGTCCCGAACGTCGAGCCTCACTGTGAATTCTGTTCTGTCCTAAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR CAA 72 bp GCGCCTGCAGATAACTCGCTCAGTCAGTGCCCTTCATaGGATCAAGACTTCATTTCTGCCGGCTCTTACTAC +
Preference number: 4 (lower is better)
Translates to: APADNSLSQCPS*DQDFISAGSYY
Trigger: GTAGTAAGAGCCGGCAGAAATGAAGTCTTGATCCAATGAAGGGCACTGACTGAGCGAGTTATCTGCAGGCGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS-3UTR TCA 90 bp AGCACTGCTAGCAAGCGGTGGGTGCCGTGTGAGAGGAGAAACTCAGTGAATTCACTTAGATCTTTCCAGTaGAAACCGACGAAACTCAGC +
Preference number: 4 (lower is better)
Translates to: STASKRWVPCERRNSVNSLRSFQ*KPTKLS
Trigger: GCTGAGTTTCGTCGGTTTTCACTGGAAAGATCTAAG...TGAATTCACTGAGTTTCTCCTCTCACACGGCACCCACCGCTTGCTAGCAGTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
3UTR CAA 72 bp CAGGTCCACAGTGTCAGTCATGTGTGCACACCAACATaGTTCCTTACACCCTCAAACAGAAAACAACCTGGT +
Preference number: 4 (lower is better)
Translates to: QVHSVSHVCTPT*FLTPSNRKQPG
Trigger: ACCAGGTTGTTTTCTGTTTGAGGGTGTAAGGAACAATGTTGGTGTGCACACATGACTGACACTGTGGACCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS CCA 90 bp CCGGACTCAAAGCTGAGCTCGATCTGCGTCAGGGACTCCAGGCTCTaGGCGGGGGTGGCCTTCGGGATCTGCTGCGGCTCGCCACTGTCT +
Preference number: 5 (lower is better)
Translates to: PDSKLSSICVRDSRL*AGVAFGICCGSPLS
Trigger: AGACAGTGGCGAGCCGCAGCAGATCCCGAAGGCCACCCCCGCCCAGAGCCTGGAGTCCCTGACGCAGATCGAGCTCAGCTTTGAGTCCGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS-3UTR CAA 90 bp GTCACGGCAGCCTGCCTCGGCAGACTCCCAGCCCAGCCCGGCCACACTTGTTGTCTGTTGCGCACCACGTaGTTCCTCTGGTTGGCCGGG +
Preference number: 5 (lower is better)
Translates to: VTAACLGRLPAQPGHTCCLLRTT*FLWLAG
Trigger: CCCGGCCAACCAGAGGAACAACGTGGTGCGCAACAG...ACAACAAGTGTGGCCGGGCTGGGCTGGGAGTCTGCCGAGGCAGGCTGCCGTGAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS GCA 90 bp TCCTCGTCGCTGTCCTGGTCCTCGGGCTCGAAGCTGGCCTCCACCTaGTGTGGGAAGCCCAGGAGGCTGTTGTCAGTGGACTGGCTGGAG +
Preference number: 5 (lower is better)
Translates to: SSSLSWSSGSKLAST*CGKPRRLLSVDWLE
Trigger: CTCCAGCCAGTCCACTGACAACAGCCTCCTGGGCTTCCCACAGCAGGTGGAGGCCAGCTTCGAGCCCGAGGACCAGGACAGCGACGAGGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS GCA 90 bp AGAGTTTCTGGTCCGGAGCCCGGCTTTCCAGCTCTGTGTCCAGGCTaGCGGGCACAGGCACCAGGCTCGTGTCCTGAGGAGGGGAGAACC +
Preference number: 5 (lower is better)
Translates to: RVSGPEPGFPALCPG*RAQAPGSCPEEGRT
Trigger: GGTTCTCCCCTCCTCAGGACACGAGCCTGGTGCCTGTGCCCGGCAGCCTGGACACAGAGCTGGAAAGCCGGGCTCCGGACCAGAAACTCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS TCA 90 bp GACCCTCCGGTGCGTCTCTGGGAGGATGTCCACGTCGATGATGGATaGCACGGGCCGGAAGTCCTGCGGCATGCTGATGACGATGTGAGG +
Preference number: 5 (lower is better)
Translates to: DPPVRLWEDVHVDDG*HGPEVLRHADDDVR
Trigger: CCTCACATCGTCATCAGCATGCCGCAGGACTTCCGGCCCGTGTCATCCATCATCGACGTGGACATCCTCCCAGAGACGCACCGGAGGGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS GCA 90 bp CCCAGCGGCTTCTCTGTGCCGTACTTGTACAGACGGACCCTCCGGTaGGTCTCTGGGAGGATGTCCACGTCGATGATGGATGACACGGGC +
Preference number: 5 (lower is better)
Translates to: PSGFSVPYLYRRTLR*VSGRMSTSMMDDTG
Trigger: GCCCGTGTCATCCATCATCGACGTGGACATCCTCCCAGAGACGCACCGGAGGGTCCGTCTGTACAAGTACGGCACAGAGAAGCCGCTGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS-3UTR CAA 90 bp CACAGGCTCACTGCACCCAGCCTCCGCCAGGCGCCTGCAGATAACTCGCTCAGTATCCTGAGCAGTGGATaGGCGGTGGAAACCGCCTTG +
Preference number: 5 (lower is better)
Translates to: HRLTAPSLRQAPADNSLSILSSG*AVETAL
Trigger: CAAGGCGGTTTCCACCGCCAATCCACTGCTCAGGAT...ACTGAGCGAGTTATCTGCAGGCGCCTGGCGGAGGCTGGGTGCAGTGAGCCTGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS-3UTR CAA 90 bp CACCCAGCCTCCGCCAGGCGCCTGCAGATAACTCGCTCAGTCAGTGCCCTTCATCCAGAAGTCCGACTGTaGCGCACCACGTTGTTCCTC +
Preference number: 5 (lower is better)
Translates to: HPASARRLQITRSVSALHPEVRL*RTTLFL
Trigger: GAGGAACAACGTGGTGCGCAACAGTCGGACTTCTGG...ATGAAGGGCACTGACTGAGCGAGTTATCTGCAGGCGCCTGGCGGAGGCTGGGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS-3UTR CAA 90 bp GTCACGGCAGCCTGCCTCGGCAGACTCCCAGCCCAGCCCGGCCACACTTGTTGTGATCTTGTGAACATGTaGCAGCAGTCCGTAAAACTC +
Preference number: 5 (lower is better)
Translates to: VTAACLGRLPAQPGHTCCDLVNM*QQSVKL
Trigger: GAGTTTTACGGACTGCTGCAACATGTTCACAAGATC...ACAACAAGTGTGGCCGGGCTGGGCTGGGAGTCTGCCGAGGCAGGCTGCCGTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS-3UTR CAA 90 bp TCGCTGACTGTGCATGCAACAGGAGGGAGCCAGGTAAGGGAAGACAACTGCGGTAAGCCCAGGAGGCTGTaGTCAGTGGACTGGCTGGAG +
Preference number: 5 (lower is better)
Translates to: SLTVHATGGSQVREDNCGKPRRL*SVDWLE
Trigger: CTCCAGCCAGTCCACTGACAACAGCCTCCTGGGCTT...ACCGCAGTTGTCTTCCCTTACCTGGCTCCCTCCTGTTGCATGCACAGTCAGCGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS CCA 90 bp GCAGGTCCCCGTGGATATCTGCGTAGCCCACCAACACGTCGACATTaGGGATCTTGTGAACATGTTGCAGCAGTCCGTAAAACTCCTCAA +
Preference number: 5 (lower is better)
Translates to: AGPRGYLRSPPTRRH*GSCEHVAAVRKTPQ
Trigger: TTGAGGAGTTTTACGGACTGCTGCAACATGTTCACAAGATCCCCAATGTCGACGTGTTGGTGGGCTACGCAGATATCCACGGGGACCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS-3UTR CAA 90 bp CCGTGTGAGAGGAGAAACTCAGTGAATTCAACAGTCACAGGCTCACTGCACCCAAACTCAGCTCCAAACTaGCTCTTCACCTCCATGGTG +
Preference number: 5 (lower is better)
Translates to: PCERRNSVNSTVTGSLHPNSAPN*LFTSMV
Trigger: CACCATGGAGGTGAAGAGCAAGTTTGGAGCTGAGTT...TGGGTGCAGTGAGCCTGTGACTGTTGAATTCACTGAGTTTCTCCTCTCACACGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS TCA 90 bp CAGTCCGTAAAACTCCTCAAATTTTCCAGGCTTAGATCTTTCCAGTaGAAACCGACGAAACTCAGCTCCAAACTTGCTCTTCACCTCCAT +
Preference number: 5 (lower is better)
Translates to: QSVKLLKFSRLRSFQ*KPTKLSSKLALHLH
Trigger: ATGGAGGTGAAGAGCAAGTTTGGAGCTGAGTTTCGTCGGTTTTCACTGGAAAGATCTAAGCCTGGAAAATTTGAGGAGTTTTACGGACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS GCA 72 bp GGTCCGGAGCCCGGCTTTCCAGCTCTGTGTCCAGGCTaGCGGGCACAGGCACCAGGCTCGTGTCCTGAGGAG +
Preference number: 6 (lower is better)
Translates to: GPEPGFPALCPG*RAQAPGSCPEE
Trigger: CTCCTCAGGACACGAGCCTGGTGCCTGTGCCCGGCAGCCTGGACACAGAGCTGGAAAGCCGGGCTCCGGACC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS TCA 72 bp CCCTCCGGTGCGTCTCTGGGAGGATGTCCACGTCGATaGTGGATGACACGGGCCGGAAGTCCTGCGGCATGC +
Preference number: 6 (lower is better)
Translates to: PSGASLGGCPRR*WMTRAGSPAAC
Trigger: GCATGCCGCAGGACTTCCGGCCCGTGTCATCCATCATCGACGTGGACATCCTCCCAGAGACGCACCGGAGGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS GCA 72 bp GAAACTCAGCTCCAAACTTGCTCTTCACCTCCATGGTaGCCAGGCAGCCGCTGCTCGCCCCGTGCCGGTGGC +
Preference number: 6 (lower is better)
Translates to: ETQLQTCSSPPW*PGSRCSPRAGG
Trigger: GCCACCGGCACGGGGCGAGCAGCGGCTGCCTGGGCACCATGGAGGTGAAGAGCAAGTTTGGAGCTGAGTTTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS TCA 72 bp TGCTCTGGGCCAGACCCCCAGGGACGAGCCGAGATATaGAGATGCCGGGGACTTTCTCCAAGCCGTGCGGTG +
Preference number: 6 (lower is better)
Translates to: CSGPDPQGRAEI*RCRGLSPSRAV
Trigger: CACCGCACGGCTTGGAGAAAGTCCCCGGCATCTTCATATCTCGGCTCGTCCCTGGGGGTCTGGCCCAGAGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS GCA 72 bp GACTCCAGGCTCTGGGCGGGGGTGGCCTTCGGGATCTaGTGCGGCTCGCCACTGTCTTCAATGATGATGTCG +
Preference number: 6 (lower is better)
Translates to: DSRLWAGVAFGI*CGSPLSSMMMS
Trigger: CGACATCATCATTGAAGACAGTGGCGAGCCGCAGCAGATCCCGAAGGCCACCCCCGCCCAGAGCCTGGAGTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS CCA 72 bp GACGAAACTCAGCTCCAAACTTGCTCTTCACCTCCATaGTGCCCAGGCAGCCGCTGCTCGCCCCGTGCCGGT +
Preference number: 6 (lower is better)
Translates to: DETQLQTCSSPP*CPGSRCSPRAG
Trigger: ACCGGCACGGGGCGAGCAGCGGCTGCCTGGGCACCATGGAGGTGAAGAGCAAGTTTGGAGCTGAGTTTCGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS TCA 72 bp GAGGAGGGGAGAACCCGTTCTGTCCGGACTCAAAGCTaGGCTCGATCTGCGTCAGGGACTCCAGGCTCTGGG +
Preference number: 6 (lower is better)
Translates to: EEGRTRSVRTQS*ARSASGTPGSG
Trigger: CCCAGAGCCTGGAGTCCCTGACGCAGATCGAGCTCAGCTTTGAGTCCGGACAGAACGGGTTCTCCCCTCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS CCA 72 bp GTGGGAAGCCCAGGAGGCTGTTGTCAGTGGACTGGCTaGAGCTGCCAGAAGTCCGACTGTTGCGCACCACGT +
Preference number: 6 (lower is better)
Translates to: VGSPGGCCQWTG*SCQKSDCCAPR
Trigger: ACGTGGTGCGCAACAGTCGGACTTCTGGCAGCTCCAGCCAGTCCACTGACAACAGCCTCCTGGGCTTCCCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS TCA 72 bp GTGCGTCTCTGGGAGGATGTCCACGTCGATGATGGATaGCACGGGCCGGAAGTCCTGCGGCATGCTGATGAC +
Preference number: 6 (lower is better)
Translates to: VRLWEDVHVDDG*HGPEVLRHADD
Trigger: GTCATCAGCATGCCGCAGGACTTCCGGCCCGTGTCATCCATCATCGACGTGGACATCCTCCCAGAGACGCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS GCA 72 bp TTCTCTGTGCCGTACTTGTACAGACGGACCCTCCGGTaGGTCTCTGGGAGGATGTCCACGTCGATGATGGAT +
Preference number: 6 (lower is better)
Translates to: FSVPYLYRRTLR*VSGRMSTSMMD
Trigger: ATCCATCATCGACGTGGACATCCTCCCAGAGACGCACCGGAGGGTCCGTCTGTACAAGTACGGCACAGAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS CCA 72 bp CGTGGATATCTGCGTAGCCCACCAACACGTCGACATTaGGGATCTTGTGAACATGTTGCAGCAGTCCGTAAA +
Preference number: 6 (lower is better)
Translates to: RGYLRSPPTRRH*GSCEHVAAVRK
Trigger: TTTACGGACTGCTGCAACATGTTCACAAGATCCCCAATGTCGACGTGTTGGTGGGCTACGCAGATATCCACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7
CDS CCA 72 bp AGCTTCTTCCTTCTTCTGTATAAAAATCCTGAGCAGTaGATTGGCGGTGGAAACCGCCTTGTGGTAGTTGTC +
Preference number: 6 (lower is better)
Translates to: SFFLLLYKNPEQ*IGGGNRLVVVV
Trigger: GACAACTACCACAAGGCGGTTTCCACCGCCAATCCACTGCTCAGGATTTTTATACAGAAGAAGGAAGAAGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052125.7