RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PARD3B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000052062

Ensembl transcript IDs: ENSMUST00000046673.11, ENSMUST00000075374.10, ENSMUST00000094906.4

Found 534 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TCCTGGGGACCTGCTGATCATAGCCTGGACTTCCAGATAACCATATaGTCTCCCGGAGCCCTGGAAAATGGTCTCGTAGCCTTGGAGGGG +
Preference number: 1 (lower is better)
Translates to: SWGPADHSLDFQITI*SPGALENGLVALEG
Trigger: CCCCTCCAAGGCTACGAGACCATTTTCCAGGGCTCCGGGAGAGCATATGGTTATCTGGAAGTCCAGGCTATGATCAGCAGGTCCCCAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CCA 90 bp ACAGTGTTAAGCCCACTGGGATCATGCCTCAGTCCAGGTGCGTGGTaGACCAGTGAGGCAGCGTTCTCTCTCGTGAGGAAGGCTGAATTC +
Preference number: 1 (lower is better)
Translates to: TVLSPLGSCLSPGAW*TSEAAFSLVRKAEF
Trigger: GAATTCAGCCTTCCTCACGAGAGAGAACGCTGCCTCACTGGTCCACCACGCACCTGGACTGAGGCATGATCCCAGTGGGCTTAACACTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CCA 90 bp GAAACAGTGTTAAGCCCACTGGGATCATGCCTCAGTCCAGGTGCGTaGTGGACCAGTGAGGCAGCGTTCTCTCTCGTGAGGAAGGCTGAA +
Preference number: 1 (lower is better)
Translates to: ETVLSPLGSCLSPGA*WTSEAAFSLVRKAE
Trigger: TTCAGCCTTCCTCACGAGAGAGAACGCTGCCTCACTGGTCCACCACGCACCTGGACTGAGGCATGATCCCAGTGGGCTTAACACTGTTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR TCA 90 bp CAGCATGGTGGCCAGGGAACCTTCAGGGCAGCCACAAGACCTTGTTaGTCAGAGCCTGGGACCCTCCACTCCATGGAACAAATTACGTAT +
Preference number: 1 (lower is better)
Translates to: QHGGQGTFRAATRPC*SEPGTLHSMEQITY
Trigger: ATACGTAATTTGTTCCATGGAGTGGAGGGTCCCAGGCTCTGATCAACAAGGTCTTGTGGCTGCCCTGAAGGTTCCCTGGCCACCATGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR GCA 90 bp AGGCATTTGAGGAGGACTCTGAAAGGAGCTATCTCCAAGCAAGCATaGCAGGGACCAGGAGGGGGAAAGCAAGGACCATGGGACAATCAA +
Preference number: 1 (lower is better)
Translates to: RHLRRTLKGAISKQA*QGPGGGKQGPWDNQ
Trigger: TTGATTGTCCCATGGTCCTTGCTTTCCCCCTCCTGGTCCCTGGCATGCTTGCTTGGAGATAGCTCCTTTCAGAGTCCTCCTCAAATGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR GCA 90 bp TCTCTTCTCCATGCTGGTAATCACATGCTTGTGCGTGCGCACGAGTaGACTCATGCGTGCACACACACACACACACACACACACACACAC +
Preference number: 1 (lower is better)
Translates to: SLLHAGNHMLVRAHE*THACTHTHTHTHTH
Trigger: GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACGCATGAGTGCACTCGTGCGCACGCACAAGCATGTGATTACCAGCATGGAGAAGAGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR GCA 90 bp GGGTACTGTTTGGCACTTGGTCTGGAACTGACATCCCTAGGACATTaGTCTCGGTGTGTCCTGACCAGCAGGCTCTGTTTTGTTTACCCA +
Preference number: 1 (lower is better)
Translates to: GYCLALGLELTSLGH*SRCVLTSRLCFVYP
Trigger: TGGGTAAACAAAACAGAGCCTGCTGGTCAGGACACACCGAGAGCAATGTCCTAGGGATGTCAGTTCCAGACCAAGTGCCAAACAGTACCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CCA 90 bp GGACCATGGGACAATCAACCTTCTTCATCTGTTCACTGTGGTTCTTaGAATGAACGCCCTTCTGGAAGCTCTGAGCAGCTCACATCCTCC +
Preference number: 1 (lower is better)
Translates to: GPWDNQPSSSVHCGS*NERPSGSSEQLTSS
Trigger: GGAGGATGTGAGCTGCTCAGAGCTTCCAGAAGGGCGTTCATTCCAAGAACCACAGTGAACAGATGAAGAAGGTTGATTGTCCCATGGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CCA 90 bp TCCAAGCAAGCATGCCAGGGACCAGGAGGGGGAAAGCAAGGACCATaGGACAATCAACCTTCTTCATCTGTTCACTGTGGTTCTTGGAAT +
Preference number: 1 (lower is better)
Translates to: SKQACQGPGGGKQGP*DNQPSSSVHCGSWN
Trigger: ATTCCAAGAACCACAGTGAACAGATGAAGAAGGTTGATTGTCCCATGGTCCTTGCTTTCCCCCTCCTGGTCCCTGGCATGCTTGCTTGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR GCA 90 bp CTTTGGGTCGAACGTTTCCAAGAGGTCACTAGTCATGTACGCGGTTaGTTTGTTCTCAGTGAATATCTGCAGCCTCTCTGCTCTGCCACT +
Preference number: 1 (lower is better)
Translates to: LWVERFQEVTSHVRG*FVLSEYLQPLCSAT
Trigger: AGTGGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAACCGCGTACATGACTAGTGACCTCTTGGAAACGTTCGACCCAAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR GCA 90 bp AGGTCACTAGTCATGTACGCGGTTGCTTTGTTCTCAGTGAATATCTaGAGCCTCTCTGCTCTGCCACTCTATAGGTCTCACACCTCAAAG +
Preference number: 1 (lower is better)
Translates to: RSLVMYAVALFSVNI*SLSALPLYRSHTSK
Trigger: CTTTGAGGTGTGAGACCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAACCGCGTACATGACTAGTGACCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CCA 90 bp CTCATTGTAACATTTGTCTCAAAGGAAAGGCCATTTCCAGCATGGTaGCCAGGGAACCTTCAGGGCAGCCACAAGACCTTGTTGATCAGA +
Preference number: 1 (lower is better)
Translates to: LIVTFVSKERPFPAW*PGNLQGSHKTLLIR
Trigger: TCTGATCAACAAGGTCTTGTGGCTGCCCTGAAGGTTCCCTGGCCACCATGCTGGAAATGGCCTTTCCTTTGAGACAAATGTTACAATGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CCA 90 bp ACACCCTCCTGCCTAATTGCATTAAACTTGGACTTTCTGTTCACATaGACCCAGGAAGCACTGGGACGTCTACCCAATTTAACGCCAGTT +
Preference number: 1 (lower is better)
Translates to: TPSCLIALNLDFLFT*TQEALGRLPNLTPV
Trigger: AACTGGCGTTAAATTGGGTAGACGTCCCAGTGCTTCCTGGGTCCATGTGAACAGAAAGTCCAAGTTTAATGCAATTAGGCAGGAGGGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR GCA 90 bp GTGCACGTGTTCTTGTCTTGGTCACACAGGAAGCTTCAGATGCTGTaGTGTATAAGAAAGTTCAAAGGAAGCAAGGGTGGCTTTTCAGCT +
Preference number: 1 (lower is better)
Translates to: VHVFLSWSHRKLQML*CIRKFKGSKGGFSA
Trigger: AGCTGAAAAGCCACCCTTGCTTCCTTTGAACTTTCTTATACAGCACAGCATCTGAAGCTTCCTGTGTGACCAAGACAAGAACACGTGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CCA 90 bp AGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTaGGGACCTGCTGATCATAGCCTGGACTTCCAGATAACCATATGC +
Preference number: 1 (lower is better)
Translates to: SFPKAVNILVAIPFS*GPADHSLDFQITIC
Trigger: GCATATGGTTATCTGGAAGTCCAGGCTATGATCAGCAGGTCCCCAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR TCA 90 bp TATAGGTCTCACACCTCAAAGTATAGGGCTGAGTCTCTAAATGGGTaGCTGGGCCTGACAAAGAGAGACTTTTACCTCTGTGCTATTGCT +
Preference number: 1 (lower is better)
Translates to: YRSHTSKYRAESLNG*LGLTKRDFYLCAIA
Trigger: AGCAATAGCACAGAGGTAAAAGTCTCTCTTTGTCAGGCCCAGTCACCCATTTAGAGACTCAGCCCTATACTTTGAGGTGTGAGACCTATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR GCA 90 bp AGTTCAAAGGAAGCAAGGGTGGCTTTTCAGCTTCTTACGTCAGAATaGTTTTCCTTTAAATCAGGTGGAGACCTTAGCTGTGCCCTGACA +
Preference number: 1 (lower is better)
Translates to: SSKEARVAFQLLTSE*FSFKSGGDLSCALT
Trigger: TGTCAGGGCACAGCTAAGGTCTCCACCTGATTTAAAGGAAAAGCATTCTGACGTAAGAAGCTGAAAAGCCACCCTTGCTTCCTTTGAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR GCA 90 bp TCTAAATGGGTGACTGGGCCTGACAAAGAGAGACTTTTACCTCTGTaGTATTGCTTGTACTATATGTGTGTGTGTGTGTGTGTGTGTGTG +
Preference number: 1 (lower is better)
Translates to: SKWVTGPDKERLLPL*YCLYYMCVCVCVCV
Trigger: CACACACACACACACACACACACACATATAGTACAAGCAATAGCACAGAGGTAAAAGTCTCTCTTTGTCAGGCCCAGTCACCCATTTAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR TCA 90 bp TACTATGTGGCTTCTAGGCTCATAGTACCTTCCTGGTTTATGAGTTaGTTTAATGCTCTGGCCTCCTGCACTGCATTTTTCCCTCATTGT +
Preference number: 1 (lower is better)
Translates to: YYVASRLIVPSWFMS*FNALASCTAFFPHC
Trigger: ACAATGAGGGAAAAATGCAGTGCAGGAGGCCAGAGCATTAAATCAACTCATAAACCAGGAAGGTACTATGAGCCTAGAAGCCACATAGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR TCA 90 bp GGAAAGGAGGAAGAAAGAGTTGCACCTGGAAGCCACAGTTGCATGTaGGAGTCCTGGCTTATTTTAGATCTCTATTTTTCCTCCTTTCTA +
Preference number: 1 (lower is better)
Translates to: GKEEERVAPGSHSCM*ESWLILDLYFSSFL
Trigger: TAGAAAGGAGGAAAAATAGAGATCTAAAATAAGCCAGGACTCTCACATGCAACTGTGGCTTCCAGGTGCAACTCTTTCTTCCTCCTTTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR GCA 90 bp AACACTATTATGGACTTTTCTGAATGGAACACCCTCCTGCCTAATTaGATTAAACTTGGACTTTCTGTTCACATGGACCCAGGAAGCACT +
Preference number: 1 (lower is better)
Translates to: NTIMDFSEWNTLLPN*IKLGLSVHMDPGST
Trigger: AGTGCTTCCTGGGTCCATGTGAACAGAAAGTCCAAGTTTAATGCAATTAGGCAGGAGGGTGTTCCATTCAGAAAAGTCCATAATAGTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CCA 90 bp CATGAACTGAGGCAGCAGAGGAACACTATTATGGACTTTTCTGAATaGAACACCCTCCTGCCTAATTGCATTAAACTTGGACTTTCTGTT +
Preference number: 1 (lower is better)
Translates to: HELRQQRNTIMDFSE*NTLLPNCIKLGLSV
Trigger: AACAGAAAGTCCAAGTTTAATGCAATTAGGCAGGAGGGTGTTCCATTCAGAAAAGTCCATAATAGTGTTCCTCTGCTGCCTCAGTTCATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CCA 90 bp ATGAAGAATTTTCTGTCTCACTGTAGCCTTGTTTCCACCCTAAGTTaGCATGAACTGAGGCAGCAGAGGAACACTATTATGGACTTTTCT +
Preference number: 1 (lower is better)
Translates to: MKNFLSHCSLVSTLS*HELRQQRNTIMDFS
Trigger: AGAAAAGTCCATAATAGTGTTCCTCTGCTGCCTCAGTTCATGCCAACTTAGGGTGGAAACAAGGCTACAGTGAGACAGAAAATTCTTCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CCA 90 bp GCTTCAGATGCTGTGCTGTATAAGAAAGTTCAAAGGAAGCAAGGGTaGCTTTTCAGCTTCTTACGTCAGAATGCTTTTCCTTTAAATCAG +
Preference number: 1 (lower is better)
Translates to: ASDAVLYKKVQRKQG*LFSFLRQNAFPLNQ
Trigger: CTGATTTAAAGGAAAAGCATTCTGACGTAAGAAGCTGAAAAGCCACCCTTGCTTCCTTTGAACTTTCTTATACAGCACAGCATCTGAAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR TCA 90 bp TGTCACAGATATAATGTTAGTTCTTTAGGGCAGAATCAGATGCAGTaGGTGCTATACTTTAAGCAAGAACAGAAAGCTGTTGTCTATTTT +
Preference number: 1 (lower is better)
Translates to: CHRYNVSSLGQNQMQ*VLYFKQEQKAVVYF
Trigger: AAAATAGACAACAGCTTTCTGTTCTTGCTTAAAGTATAGCACTCACTGCATCTGATTCTGCCCTAAAGAACTAACATTATATCTGTGACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CCA 90 bp GGCTACTCTATGGCTTCTAGAACACTACAATTCAGTAAAACCTATTaGTCAATGGTATTCTACTCTCAGCCAAAATATGTCTATATTGAA +
Preference number: 1 (lower is better)
Translates to: GYSMASRTLQFSKTY*SMVFYSQPKYVYIE
Trigger: TTCAATATAGACATATTTTGGCTGAGAGTAGAATACCATTGACCAATAGGTTTTACTGAATTGTAGTGTTCTAGAAGCCATAGAGTAGCC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR TCA 90 bp AAGGAGCTATCTCCAAGCAAGCATGCCAGGGACCAGGAGGGGGAAAGCAAGGACATGGGTGACTGGGCCTaGCAAAGAGAGACTTTTACC +
Preference number: 2 (lower is better)
Translates to: KELSPSKHARDQEGESKDMGDWA*QRETFT
Trigger: GGTAAAAGTCTCTCTTTGTCAGGCCCAGTCACCCAT...GTCCTTGCTTTCCCCCTCCTGGTCCCTGGCATGCTTGCTTGGAGATAGCTCCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR GCA 90 bp CTTACTGCCCCAGCTTTTCTTAACCATTGCTTGGCTTGCTGTAGCCTCTGTCACTACCCCTTGCCAGCCTaGAAGTGGCCCAGCCTCCTT +
Preference number: 2 (lower is better)
Translates to: LTAPAFLNHCLACCSLCHYPLPA*KWPSLL
Trigger: AAGGAGGCTGGGCCACTTGCAGGCTGGCAAGGGGTA...GTGACAGAGGCTACAGCAAGCCAAGCAATGGTTAAGAAAAGCTGGGGCAGTAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR TCA 90 bp CTTACTGCCCCAGCTTTTCTTAACCATTGCTTGGCTTGCTGTAGCCTCTGTCACCCCTTCTGGAAGCTCTaGGCAGCTCACATCCTCCCA +
Preference number: 2 (lower is better)
Translates to: LTAPAFLNHCLACCSLCHPFWKL*AAHILP
Trigger: TGGGAGGATGTGAGCTGCTCAGAGCTTCCAGAAGGG...GTGACAGAGGCTACAGCAAGCCAAGCAATGGTTAAGAAAAGCTGGGGCAGTAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR GCA 90 bp CTTGTGCACGTGTTCTTGTCTTGGTCACACAGGAAGCTTCAGATGCTGTGCTGTATCTCCAAGCAAGCATaGCAGGGACCAGGAGGGGGA +
Preference number: 2 (lower is better)
Translates to: LVHVFLSWSHRKLQMLCCISKQA*QGPGGG
Trigger: TCCCCCTCCTGGTCCCTGGCATGCTTGCTTGGAGAT...ACAGCACAGCATCTGAAGCTTCCTGTGTGACCAAGACAAGAACACGTGCACAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR GCA 90 bp CTTACTGCCCCAGCTTTTCTTAACCATTGCTTGGCTTGCTGTAGCCTCTGTCACGTGGCCCAGCCTCCTTaGAAGGGGAAACTTGTGCCT +
Preference number: 2 (lower is better)
Translates to: LTAPAFLNHCLACCSLCHVAQPP*KGKLVP
Trigger: AGGCACAAGTTTCCCCTTGCAAGGAGGCTGGGCCAC...GTGACAGAGGCTACAGCAAGCCAAGCAATGGTTAAGAAAAGCTGGGGCAGTAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR GCA 90 bp CTTACTGCCCCAGCTTTTCTTAACCATTGCTTGGCTTGCTGTAGCCTCTGTCACAAGGGCCAACCCCTCTaGAGCACAGCACTGTCACCT +
Preference number: 2 (lower is better)
Translates to: LTAPAFLNHCLACCSLCHKGQPL*STALSP
Trigger: AGGTGACAGTGCTGTGCTGCAGAGGGGTTGGCCCTT...GTGACAGAGGCTACAGCAAGCCAAGCAATGGTTAAGAAAAGCTGGGGCAGTAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CAA 90 bp TGGGTACTGTTTGGCACTTGGTCTGGAACTGACATCCCTAGGACATaGCTCTCGGTGTGTCCTGACCAGCAGGCTCTGTTTTGTTTACCC +
Preference number: 2 (lower is better)
Translates to: WVLFGTWSGTDIPRT*LSVCPDQQALFCLP
Trigger: GGGTAAACAAAACAGAGCCTGCTGGTCAGGACACACCGAGAGCAATGTCCTAGGGATGTCAGTTCCAGACCAAGTGCCAAACAGTACCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR TCA 90 bp GGAACGGAACACTTTCTGAAGAGCAGATCAAGAGATGGGCTCAAAGAGTCTGTGGCCACAAGACCTTGTTaGTCAGAGCCTGGGACCCTC +
Preference number: 2 (lower is better)
Translates to: GTEHFLKSRSRDGLKESVATRPC*SEPGTL
Trigger: GAGGGTCCCAGGCTCTGATCAACAAGGTCTTGTGGC...CACAGACTCTTTGAGCCCATCTCTTGATCTGCTCTTCAGAAAGTGTTCCGTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CCA 90 bp CCTTTCTCTGTTATAGAGCTCCCAGCTACAGAGAGATACCCTAGTGAGTTTTCCTTGCCAGCCTGCAAGTaGCCCAGCCTCCTTGCAAGG +
Preference number: 2 (lower is better)
Translates to: PFSVIELPATERYPSEFSLPACK*PSLLAR
Trigger: CCTTGCAAGGAGGCTGGGCCACTTGCAGGCTGGCAA...GGAAAACTCACTAGGGTATCTCTCTGTAGCTGGGAGCTCTATAACAGAGAAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CAA 90 bp ATGGACCCAGGAAGCACTGGGACGTCTACCCAATTTAACGCCAGTTaGAAAGCTGCTCACAGTGGATCTCAGTGTTCAGTGCTGATGGGA +
Preference number: 2 (lower is better)
Translates to: MDPGSTGTSTQFNAS*KAAHSGSQCSVLMG
Trigger: TCCCATCAGCACTGAACACTGAGATCCACTGTGAGCAGCTTTCAAACTGGCGTTAAATTGGGTAGACGTCCCAGTGCTTCCTGGGTCCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR TCA 90 bp GGACCAGGAGGGGGAAAGCAAGGACCATGGGACAATCAACCTTCTTCATCTGTTATGGGTGACTGGGCCTaGCAAAGAGAGACTTTTACC +
Preference number: 2 (lower is better)
Translates to: GPGGGKQGPWDNQPSSSVMGDWA*QRETFT
Trigger: GGTAAAAGTCTCTCTTTGTCAGGCCCAGTCACCCAT...AACAGATGAAGAAGGTTGATTGTCCCATGGTCCTTGCTTTCCCCCTCCTGGTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR GCA 90 bp CTTGTGCACGTGTTCTTGTCTTGGTCACACAGGAAGCTTCAGATGCTGTGCTGTGAGTGCACTCATGCGTaGACACACACACACACACAC +
Preference number: 2 (lower is better)
Translates to: LVHVFLSWSHRKLQMLCCECTHA*THTHTH
Trigger: GTGTGTGTGTGTGTGTGTGCACGCATGAGTGCACTC...ACAGCACAGCATCTGAAGCTTCCTGTGTGACCAAGACAAGAACACGTGCACAAG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR GCA 90 bp ATTGCATTAAACTTGGACTTTCTGTTCACATGGACCCAGGAAGCACTGGGACGTGTGGCCCAGCCTCCTTaGAAGGGGAAACTTGTGCCT +
Preference number: 2 (lower is better)
Translates to: IALNLDFLFTWTQEALGRVAQPP*KGKLVP
Trigger: AGGCACAAGTTTCCCCTTGCAAGGAGGCTGGGCCAC...ACGTCCCAGTGCTTCCTGGGTCCATGTGAACAGAAAGTCCAAGTTTAATGCAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CCA 90 bp TCCAAGGCTCCGCTTCTCTACAATGCTATTGAATTCATCAGCCTTTTGCTCCATTTGCCAGCCTGCAAGTaGCCCAGCCTCCTTGCAAGG +
Preference number: 2 (lower is better)
Translates to: SKAPLLYNAIEFISLLLHLPACK*PSLLAR
Trigger: CCTTGCAAGGAGGCTGGGCCACTTGCAGGCTGGCAA...ATGGAGCAAAAGGCTGATGAATTCAATAGCATTGTAGAGAAGCGGAGCCTTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CAA 90 bp GGGTCGAACGTTTCCAAGAGGTCACTAGTCATGTACGCGGTTGCTTaGTTCTCAGTGAATATCTGCAGCCTCTCTGCTCTGCCACTCTAT +
Preference number: 2 (lower is better)
Translates to: GSNVSKRSLVMYAVA*FSVNICSLSALPLY
Trigger: ATAGAGTGGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAACCGCGTACATGACTAGTGACCTCTTGGAAACGTTCGACCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CAA 90 bp ATAACCATATGCTCTCCCGGAGCCCTGGAAAATGGTCTCGTAGCCTaGGAGGGGAGACAGTTGGAGGGATGTTACACAGGCATTGATAAA +
Preference number: 2 (lower is better)
Translates to: ITICSPGALENGLVA*EGRQLEGCYTGIDK
Trigger: TTTATCAATGCCTGTGTAACATCCCTCCAACTGTCTCCCCTCCAAGGCTACGAGACCATTTTCCAGGGCTCCGGGAGAGCATATGGTTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR TCA 90 bp TCCAAGGCTCCGCTTCTCTACAATGCTATTGAATTCATCAGCCTTTTGCTCCATCCCTTCTGGAAGCTCTaGGCAGCTCACATCCTCCCA +
Preference number: 2 (lower is better)
Translates to: SKAPLLYNAIEFISLLLHPFWKL*AAHILP
Trigger: TGGGAGGATGTGAGCTGCTCAGAGCTTCCAGAAGGG...ATGGAGCAAAAGGCTGATGAATTCAATAGCATTGTAGAGAAGCGGAGCCTTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR GCA 90 bp GGACCAGGAGGGGGAAAGCAAGGACCATGGGACAATCAACCTTCTTCATCTGTTTTCTCAGTGAATATCTaGAGCCTCTCTGCTCTGCCA +
Preference number: 2 (lower is better)
Translates to: GPGGGKQGPWDNQPSSSVFSVNI*SLSALP
Trigger: TGGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAA...AACAGATGAAGAAGGTTGATTGTCCCATGGTCCTTGCTTTCCCCCTCCTGGTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CCA 90 bp AAGCAAGAGCCACTCTGTACCACGGAACACCTTAGCCCAGAGAAGGCCTTAGGTGATGTCCTCTTTGCTTaGCAGATCTCTGTGATGTTC +
Preference number: 2 (lower is better)
Translates to: KQEPLCTTEHLSPEKALGDVLFA*QISVMF
Trigger: GAACATCACAGAGATCTGCCAAGCAAAGAGGACATC...ACCTAAGGCCTTCTCTGGGCTAAGGTGTTCCGTGGTACAGAGTGGCTCTTGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR TCA 90 bp CCTTTCTCTGTTATAGAGCTCCCAGCTACAGAGAGATACCCTAGTGAGTTTTCCCTGTGGTTCTTGGAATaGACGCCCTTCTGGAAGCTC +
Preference number: 2 (lower is better)
Translates to: PFSVIELPATERYPSEFSLWFLE*TPFWKL
Trigger: GAGCTTCCAGAAGGGCGTTCATTCCAAGAACCACAG...GGAAAACTCACTAGGGTATCTCTCTGTAGCTGGGAGCTCTATAACAGAGAAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR TCA 90 bp GATTGTGTTGACTGTGTACAACACAAAGCCAAGGTCTGGAGAAGCTTTTCTGTAGCTCTCGGTGTGTCCTaGCCAGCAGGCTCTGTTTTG +
Preference number: 2 (lower is better)
Translates to: DCVDCVQHKAKVWRSFSVALGVS*PAGSVL
Trigger: CAAAACAGAGCCTGCTGGTCAGGACACACCGAGAGC...TACAGAAAAGCTTCTCCAGACCTTGGCTTTGTGTTGTACACAGTCAACACAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR GCA 90 bp CAGCTTCTTACGTCAGAATGCTTTTCCTTTAAATCAGGTGGAGACCTTAGCTGTATCTCCAAGCAAGCATaGCAGGGACCAGGAGGGGGA +
Preference number: 2 (lower is better)
Translates to: QLLTSECFSFKSGGDLSCISKQA*QGPGGG
Trigger: TCCCCCTCCTGGTCCCTGGCATGCTTGCTTGGAGAT...ACAGCTAAGGTCTCCACCTGATTTAAAGGAAAAGCATTCTGACGTAAGAAGCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CCA 90 bp CTTACTGCCCCAGCTTTTCTTAACCATTGCTTGGCTTGCTGTAGCCTCTGTCACGTACTGTTTGGCACTTaGTCTGGAACTGACATCCCT +
Preference number: 2 (lower is better)
Translates to: LTAPAFLNHCLACCSLCHVLFGT*SGTDIP
Trigger: AGGGATGTCAGTTCCAGACCAAGTGCCAAACAGTAC...GTGACAGAGGCTACAGCAAGCCAAGCAATGGTTAAGAAAAGCTGGGGCAGTAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CCA 90 bp CTTACTGCCCCAGCTTTTCTTAACCATTGCTTGGCTTGCTGTAGCCTCTGTCACGAAGCCTTCCTGCTTTaGCTTCCTGATACTATGTGG +
Preference number: 2 (lower is better)
Translates to: LTAPAFLNHCLACCSLCHEAFLL*LPDTMW
Trigger: CCACATAGTATCAGGAAGCCAAAGCAGGAAGGCTTC...GTGACAGAGGCTACAGCAAGCCAAGCAATGGTTAAGAAAAGCTGGGGCAGTAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CCA 90 bp CTTACTGCCCCAGCTTTTCTTAACCATTGCTTGGCTTGCTGTAGCCTCTGTCACCACAAAGCCAAGGTCTaGAGAAGCTTTTCTGTAGCC +
Preference number: 2 (lower is better)
Translates to: LTAPAFLNHCLACCSLCHHKAKV*RSFSVA
Trigger: GGCTACAGAAAAGCTTCTCCAGACCTTGGCTTTGTG...GTGACAGAGGCTACAGCAAGCCAAGCAATGGTTAAGAAAAGCTGGGGCAGTAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CCA 90 bp ATTGCATTAAACTTGGACTTTCTGTTCACATGGACCCAGGAAGCACTGGGACGTGCCTTTTGCTCCATGTaGCCCTGTGGGTTCCACATA +
Preference number: 2 (lower is better)
Translates to: IALNLDFLFTWTQEALGRAFCSM*PCGFHI
Trigger: TATGTGGAACCCACAGGGCCACATGGAGCAAAAGGC...ACGTCCCAGTGCTTCCTGGGTCCATGTGAACAGAAAGTCCAAGTTTAATGCAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR TCA 90 bp AATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGTCTCACACCTCAAAGTATGAGTCTCTAAATGGGTaGCTGGGCCTGACAAAGAGA +
Preference number: 2 (lower is better)
Translates to: NICSLSALPLYRSHTSKYESLNG*LGLTKR
Trigger: TCTCTTTGTCAGGCCCAGTCACCCATTTAGAGACTC...ATACTTTGAGGTGTGAGACCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR TCA 90 bp CTTACTGCCCCAGCTTTTCTTAACCATTGCTTGGCTTGCTGTAGCCTCTGTCACTTGCTTTGTTCTCAGTaGATATCTGCAGCCTCTCTG +
Preference number: 2 (lower is better)
Translates to: LTAPAFLNHCLACCSLCHLLCSQ*ISAASL
Trigger: CAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAA...GTGACAGAGGCTACAGCAAGCCAAGCAATGGTTAAGAAAAGCTGGGGCAGTAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR GCA 90 bp AGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGGGGATGCTGGTAATCACATaGTTGTGCGTGCGCACGAGT +
Preference number: 2 (lower is better)
Translates to: SEFSQGCKYTGSYSLLLGMLVIT*LCVRTS
Trigger: ACTCGTGCGCACGCACAAGCATGTGATTACCAGCAT...CCCCAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR GCA 90 bp TCCAAGGCTCCGCTTCTCTACAATGCTATTGAATTCATCAGCCTTTTGCTCCATCTCCCTTTACTTCCCTaGCTGACTCCTCCCGCATTA +
Preference number: 2 (lower is better)
Translates to: SKAPLLYNAIEFISLLLHLPLLP*LTPPAL
Trigger: TAATGCGGGAGGAGTCAGGCAGGGAAGTAAAGGGAG...ATGGAGCAAAAGGCTGATGAATTCAATAGCATTGTAGAGAAGCGGAGCCTTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CCA 90 bp GGAACGGAACACTTTCTGAAGAGCAGATCAAGAGATGGGCTCAAAGAGTCTGTGTTAAAAGCCAGGCTGTaGGCGACTGCATGGCTATTT +
Preference number: 2 (lower is better)
Translates to: GTEHFLKSRSRDGLKESVLKARL*ATAWLF
Trigger: AAATAGCCATGCAGTCGCCCACAGCCTGGCTTTTAA...CACAGACTCTTTGAGCCCATCTCTTGATCTGCTCTTCAGAAAGTGTTCCGTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CAA 90 bp TGGACTTTTCTGAATGGAACACCCTCCTGCCTAATTGCATTAAACTaGGACTTTCTGTTCACATGGACCCAGGAAGCACTGGGACGTCTA +
Preference number: 2 (lower is better)
Translates to: WTFLNGTPSCLIALN*DFLFTWTQEALGRL
Trigger: TAGACGTCCCAGTGCTTCCTGGGTCCATGTGAACAGAAAGTCCAAGTTTAATGCAATTAGGCAGGAGGGTGTTCCATTCAGAAAAGTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR TCA 90 bp CCTAGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGGAGTCTCTAAATGGGTaGCTGGGCCTGACAAAGAGA +
Preference number: 2 (lower is better)
Translates to: PSEFSQGCKYTGSYSLLLESLNG*LGLTKR
Trigger: TCTCTTTGTCAGGCCCAGTCACCCATTTAGAGACTC...CAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACTAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR GCA 90 bp CCTTTCTCTGTTATAGAGCTCCCAGCTACAGAGAGATACCCTAGTGAGTTTTCCAATGCTCTGGCCTCCTaGACTGCATTTTTCCCTCAT +
Preference number: 2 (lower is better)
Translates to: PFSVIELPATERYPSEFSNALAS*TAFFPH
Trigger: ATGAGGGAAAAATGCAGTGCAGGAGGCCAGAGCATT...GGAAAACTCACTAGGGTATCTCTCTGTAGCTGGGAGCTCTATAACAGAGAAAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CCA 90 bp GGAACGGAACACTTTCTGAAGAGCAGATCAAGAGATGGGCTCAAAGAGTCTGTGGGACCCTCCACTCCATaGAACAAATTACGTATGATG +
Preference number: 2 (lower is better)
Translates to: GTEHFLKSRSRDGLKESVGPSTP*NKLRMM
Trigger: CATCATACGTAATTTGTTCCATGGAGTGGAGGGTCC...CACAGACTCTTTGAGCCCATCTCTTGATCTGCTCTTCAGAAAGTGTTCCGTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CCA 90 bp CCTTTCTCTGTTATAGAGCTCCCAGCTACAGAGAGATACCCTAGTGAGTTTTCCGAAGCCTTCCTGCTTTaGCTTCCTGATACTATGTGG +
Preference number: 2 (lower is better)
Translates to: PFSVIELPATERYPSEFSEAFLL*LPDTMW
Trigger: CCACATAGTATCAGGAAGCCAAAGCAGGAAGGCTTC...GGAAAACTCACTAGGGTATCTCTCTGTAGCTGGGAGCTCTATAACAGAGAAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CAA 90 bp GTGACTGGGCCTGACAAAGAGAGACTTTTACCTCTGTGCTATTGCTaGTACTATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT +
Preference number: 2 (lower is better)
Translates to: VTGPDKERLLPLCYC*YYMCVCVCVCVCVC
Trigger: ACACACACACACACACACACACACACACACACACATATAGTACAAGCAATAGCACAGAGGTAAAAGTCTCTCTTTGTCAGGCCCAGTCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR GCA 90 bp AATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGTCTCACACCTCAAAGTATGTTGGATGTCCTCTTTaGTTGGCAGATCTCTGTGAT +
Preference number: 2 (lower is better)
Translates to: NICSLSALPLYRSHTSKYVGCPL*LADLCD
Trigger: ATCACAGAGATCTGCCAAGCAAAGAGGACATCCAAC...ATACTTTGAGGTGTGAGACCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR GCA 90 bp AGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGGGGGTTGGATGTCCTCTTTaGTTGGCAGATCTCTGTGAT +
Preference number: 2 (lower is better)
Translates to: SEFSQGCKYTGSYSLLLGVGCPL*LADLCD
Trigger: ATCACAGAGATCTGCCAAGCAAAGAGGACATCCAAC...CCCCAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR GCA 90 bp CTTACTGCCCCAGCTTTTCTTAACCATTGCTTGGCTTGCTGTAGCCTCTGTCACTCAAAAGCAAGGAAGTaGAAAAGGCTGGTAACAAGT +
Preference number: 2 (lower is better)
Translates to: LTAPAFLNHCLACCSLCHSKARK*KRLVTS
Trigger: ACTTGTTACCAGCCTTTTGCACTTCCTTGCTTTTGA...GTGACAGAGGCTACAGCAAGCCAAGCAATGGTTAAGAAAAGCTGGGGCAGTAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR GCA 90 bp ACAGATGACTTGGTAATCATAAAAGAACAGGAAAGACGAGAGAAAGCGAGGGTACTCCCTTTACTTCCCTaGCTGACTCCTCCCGCATTA +
Preference number: 2 (lower is better)
Translates to: TDDLVIIKEQERREKARVLPLLP*LTPPAL
Trigger: TAATGCGGGAGGAGTCAGGCAGGGAAGTAAAGGGAG...TACCCTCGCTTTCTCTCGTCTTTCCTGTTCTTTTATGATTACCAAGTCATCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR GCA 90 bp AGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGGGGACCTTGAAGCCTTCCTaGTTTGGCTTCCTGATACTA +
Preference number: 2 (lower is better)
Translates to: SEFSQGCKYTGSYSLLLGTLKPS*FGFLIL
Trigger: TAGTATCAGGAAGCCAAAGCAGGAAGGCTTCAAGGT...CCCCAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CCA 90 bp AATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGTCTCACACCTCAAAGTATGATGTCCTCTTTGCTTaGCAGATCTCTGTGATGTTC +
Preference number: 2 (lower is better)
Translates to: NICSLSALPLYRSHTSKYDVLFA*QISVMF
Trigger: GAACATCACAGAGATCTGCCAAGCAAAGAGGACATC...ATACTTTGAGGTGTGAGACCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CCA 90 bp GGAACGGAACACTTTCTGAAGAGCAGATCAAGAGATGGGCTCAAAGAGTCTGTGGGGAAACTTGTGCCTTaGATAAAATCAGTGCTTCAC +
Preference number: 2 (lower is better)
Translates to: GTEHFLKSRSRDGLKESVGKLVP*IKSVLH
Trigger: GTGAAGCACTGATTTTATCCAAGGCACAAGTTTCCC...CACAGACTCTTTGAGCCCATCTCTTGATCTGCTCTTCAGAAAGTGTTCCGTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CCA 90 bp TCCAAGGCTCCGCTTCTCTACAATGCTATTGAATTCATCAGCCTTTTGCTCCATCACAAAGCCAAGGTCTaGAGAAGCTTTTCTGTAGCC +
Preference number: 2 (lower is better)
Translates to: SKAPLLYNAIEFISLLLHHKAKV*RSFSVA
Trigger: GGCTACAGAAAAGCTTCTCCAGACCTTGGCTTTGTG...ATGGAGCAAAAGGCTGATGAATTCAATAGCATTGTAGAGAAGCGGAGCCTTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CAA 90 bp TGTGGACCAGGGAACAGAGAAATCAGCTCTCTGATCTTCCTGAAGTaGCAGGAGGATTTCCTTCACAAGGTAGGTTTAGCTTTAAAAGGA +
Preference number: 2 (lower is better)
Translates to: CGPGNREISSLIFLK*QEDFLHKVGLALKG
Trigger: TCCTTTTAAAGCTAAACCTACCTTGTGAAGGAAATCCTCCTGCAACTTCAGGAAGATCAGAGAGCTGATTTCTCTGTTCCCTGGTCCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR TCA 90 bp GGAACGGAACACTTTCTGAAGAGCAGATCAAGAGATGGGCTCAAAGAGTCTGTGAGAGCAGATGCAGACTaGTTTAATCTTACCATCATC +
Preference number: 2 (lower is better)
Translates to: GTEHFLKSRSRDGLKESVRADAD*FNLTII
Trigger: GATGATGGTAAGATTAAATCAGTCTGCATCTGCTCT...CACAGACTCTTTGAGCCCATCTCTTGATCTGCTCTTCAGAAAGTGTTCCGTTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR TCA 90 bp ATTGCATTAAACTTGGACTTTCTGTTCACATGGACCCAGGAAGCACTGGGACGTAATTTAACGCCAGTTTaGAAGCTGCTCACAGTGGAT +
Preference number: 2 (lower is better)
Translates to: IALNLDFLFTWTQEALGRNLTPV*KLLTVD
Trigger: ATCCACTGTGAGCAGCTTTCAAACTGGCGTTAAATT...ACGTCCCAGTGCTTCCTGGGTCCATGTGAACAGAAAGTCCAAGTTTAATGCAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR GCA 90 bp GGAACGGAACACTTTCTGAAGAGCAGATCAAGAGATGGGCTCAAAGAGTCTGTGTCAAAAGCAAGGAAGTaGAAAAGGCTGGTAACAAGT +
Preference number: 2 (lower is better)
Translates to: GTEHFLKSRSRDGLKESVSKARK*KRLVTS
Trigger: ACTTGTTACCAGCCTTTTGCACTTCCTTGCTTTTGA...CACAGACTCTTTGAGCCCATCTCTTGATCTGCTCTTCAGAAAGTGTTCCGTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR GCA 90 bp GATTGTGTTGACTGTGTACAACACAAAGCCAAGGTCTGGAGAAGCTTTTCTGTAACACTTTCATCTACTTaGTGTTCCAGGGGCAGATGG +
Preference number: 2 (lower is better)
Translates to: DCVDCVQHKAKVWRSFSVTLSST*CSRGRW
Trigger: CCATCTGCCCCTGGAACAGCAAGTAGATGAAAGTGT...TACAGAAAAGCTTCTCCAGACCTTGGCTTTGTGTTGTACACAGTCAACACAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CCA 90 bp AGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGGGGAATACAGTCTTCCTTTaGGTCGAACGTTTCCAAGAG +
Preference number: 2 (lower is better)
Translates to: SEFSQGCKYTGSYSLLLGNTVFL*VERFQE
Trigger: CTCTTGGAAACGTTCGACCCAAAGGAAGACTGTATT...CCCCAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CCA 90 bp CCTAGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGGGAAAGCAAGGACCATaGGACAATCAACCTTCTTCA +
Preference number: 2 (lower is better)
Translates to: PSEFSQGCKYTGSYSLLLGKQGP*DNQPSS
Trigger: TGAAGAAGGTTGATTGTCCCATGGTCCTTGCTTTCC...CAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACTAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CAA 90 bp CCAGCCAGGGGCTACTATAGTATAGCTCCATTGATTGTTAATCAGTaGTCATTCTCACCGAATCAACCAATCCTGCAAGCCTTTCAAGTA +
Preference number: 2 (lower is better)
Translates to: PARGYYSIAPLIVNQ*SFSPNQPILQAFQV
Trigger: TACTTGAAAGGCTTGCAGGATTGGTTGATTCGGTGAGAATGACAACTGATTAACAATCAATGGAGCTATACTATAGTAGCCCCTGGCTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CAA 90 bp GTAAGGTTGCTGGCTGAAGAGAGATGGAAGAGGACAGAAAGCAACTaGACAGTCTATAATTCAGAGGGCCACAGTAATTGTGGTTTAGAT +
Preference number: 2 (lower is better)
Translates to: VRLLAEERWKRTESN*TVYNSEGHSNCGLD
Trigger: ATCTAAACCACAATTACTGTGGCCCTCTGAATTATAGACTGTCAAGTTGCTTTCTGTCCTCTTCCATCTCTCTTCAGCCAGCAACCTTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CAA 90 bp TACCTTTGGACTTTTGTGTGCTTCTCAGGATTAGCAACGATTGTGTaGACTGTGTACAACACAAAGCCAAGGTCTGGAGAAGCTTTTCTG +
Preference number: 2 (lower is better)
Translates to: YLWTFVCFSGLATIV*TVYNTKPRSGEAFL
Trigger: CAGAAAAGCTTCTCCAGACCTTGGCTTTGTGTTGTACACAGTCAACACAATCGTTGCTAATCCTGAGAAGCACACAAAAGTCCAAAGGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR TCA 90 bp CAGCTCTCTGATCTTCCTGAAGTTGCAGGAGGATTTCCTTCACAAGGTAGGTTTATCCTTCTTCCATTTTaGATCTACATCCTCAAACCC +
Preference number: 2 (lower is better)
Translates to: QLSDLPEVAGGFPSQGRFILLPF*IYILKP
Trigger: GGGTTTGAGGATGTAGATTCAAAATGGAAGAAGGAT...AAACCTACCTTGTGAAGGAAATCCTCCTGCAACTTCAGGAAGATCAGAGAGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR TCA 90 bp CAGCTTCTTACGTCAGAATGCTTTTCCTTTAAATCAGGTGGAGACCTTAGCTGTTTGCTTTGTTCTCAGTaGATATCTGCAGCCTCTCTG +
Preference number: 2 (lower is better)
Translates to: QLLTSECFSFKSGGDLSCLLCSQ*ISAASL
Trigger: CAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAA...ACAGCTAAGGTCTCCACCTGATTTAAAGGAAAAGCATTCTGACGTAAGAAGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR TCA 90 bp CAGCTCTCTGATCTTCCTGAAGTTGCAGGAGGATTTCCTTCACAAGGTAGGTTTTACCTTCCTGGTTTATaGGTTGATTTAATGCTCTGG +
Preference number: 2 (lower is better)
Translates to: QLSDLPEVAGGFPSQGRFYLPGL*VDLMLW
Trigger: CCAGAGCATTAAATCAACTCATAAACCAGGAAGGTA...AAACCTACCTTGTGAAGGAAATCCTCCTGCAACTTCAGGAAGATCAGAGAGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR GCA 90 bp ATTGCATTAAACTTGGACTTTCTGTTCACATGGACCCAGGAAGCACTGGGACGTCAGCAATTGCATCATTaGTGGCCACAAAAGTATTTC +
Preference number: 2 (lower is better)
Translates to: IALNLDFLFTWTQEALGRQQLHH*WPQKYF
Trigger: GAAATACTTTTGTGGCCAGCAATGATGCAATTGCTG...ACGTCCCAGTGCTTCCTGGGTCCATGTGAACAGAAAGTCCAAGTTTAATGCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CCA 90 bp TCCAAGGCTCCGCTTCTCTACAATGCTATTGAATTCATCAGCCTTTTGCTCCATAATACAGTCTTCCTTTaGGTCGAACGTTTCCAAGAG +
Preference number: 2 (lower is better)
Translates to: SKAPLLYNAIEFISLLLHNTVFL*VERFQE
Trigger: CTCTTGGAAACGTTCGACCCAAAGGAAGACTGTATT...ATGGAGCAAAAGGCTGATGAATTCAATAGCATTGTAGAGAAGCGGAGCCTTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR GCA 90 bp CCTAGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGAAGCTTCAGATGCTGTaGTGTATAAGAAAGTTCAAA +
Preference number: 2 (lower is better)
Translates to: PSEFSQGCKYTGSYSLLLKLQML*CIRKFK
Trigger: TTTGAACTTTCTTATACAGCACAGCATCTGAAGCTT...CAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACTAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CCA 90 bp GATTGTGTTGACTGTGTACAACACAAAGCCAAGGTCTGGAGAAGCTTTTCTGTACAATTGCATCATTGCTaGCCACAAAAGTATTTCAAA +
Preference number: 2 (lower is better)
Translates to: DCVDCVQHKAKVWRSFSVQLHHC*PQKYFK
Trigger: TTTGAAATACTTTTGTGGCCAGCAATGATGCAATTG...TACAGAAAAGCTTCTCCAGACCTTGGCTTTGTGTTGTACACAGTCAACACAATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR GCA 90 bp ACAGATGACTTGGTAATCATAAAAGAACAGGAAAGACGAGAGAAAGCGAGGGTACTTCTTACGTCAGAATaGTTTTCCTTTAAATCAGGT +
Preference number: 2 (lower is better)
Translates to: TDDLVIIKEQERREKARVLLTSE*FSFKSG
Trigger: ACCTGATTTAAAGGAAAAGCATTCTGACGTAAGAAG...TACCCTCGCTTTCTCTCGTCTTTCCTGTTCTTTTATGATTACCAAGTCATCTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR GCA 72 bp CAACCCCTCTGCAGCACAGCACTGTCACCTACCCCTTaGCAGCCTGCAAGTGGCCCAGCCTCCTTGCAAGGG +
Preference number: 3 (lower is better)
Translates to: QPLCSTALSPTP*QPASGPASLQG
Trigger: CCCTTGCAAGGAGGCTGGGCCACTTGCAGGCTGGCAAGGGGTAGGTGACAGTGCTGTGCTGCAGAGGGGTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR GCA 72 bp GTGAGCCAAGCAGCCATCCTCAAGGGCCAACCCCTCTaGAGCACAGCACTGTCACCTACCCCTTGCCAGCCT +
Preference number: 3 (lower is better)
Translates to: VSQAAILKGQPL*STALSPTPCQP
Trigger: AGGCTGGCAAGGGGTAGGTGACAGTGCTGTGCTGCAGAGGGGTTGGCCCTTGAGGATGGCTGCTTGGCTCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR GCA 72 bp CTGCAGCACAGCACTGTCACCTACCCCTTGCCAGCCTaGAAGTGGCCCAGCCTCCTTGCAAGGGGAAACTTG +
Preference number: 3 (lower is better)
Translates to: LQHSTVTYPLPA*KWPSLLARGNL
Trigger: CAAGTTTCCCCTTGCAAGGAGGCTGGGCCACTTGCAGGCTGGCAAGGGGTAGGTGACAGTGCTGTGCTGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CCA 72 bp CACAGCACTGTCACCTACCCCTTGCCAGCCTGCAAGTaGCCCAGCCTCCTTGCAAGGGGAAACTTGTGCCTT +
Preference number: 3 (lower is better)
Translates to: HSTVTYPLPACK*PSLLARGNLCL
Trigger: AAGGCACAAGTTTCCCCTTGCAAGGAGGCTGGGCCACTTGCAGGCTGGCAAGGGGTAGGTGACAGTGCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR TCA 72 bp GGCCAGGGAACCTTCAGGGCAGCCACAAGACCTTGTTaGTCAGAGCCTGGGACCCTCCACTCCATGGAACAA +
Preference number: 3 (lower is better)
Translates to: GQGTFRAATRPC*SEPGTLHSMEQ
Trigger: TTGTTCCATGGAGTGGAGGGTCCCAGGCTCTGATCAACAAGGTCTTGTGGCTGCCCTGAAGGTTCCCTGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CCA 72 bp CCTCTCTCATACCTTTCTAGCTATACAAAAAGGGGGTaGAGGAGGTGGCGAGGAGAGGGCCCACGAGGCTGG +
Preference number: 3 (lower is better)
Translates to: PLSYLSSYTKRG*RRWRGEGPRGW
Trigger: CCAGCCTCGTGGGCCCTCTCCTCGCCACCTCCTCCACCCCCTTTTTGTATAGCTAGAAAGGTATGAGAGAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR GCA 72 bp AGGAGGACTCTGAAAGGAGCTATCTCCAAGCAAGCATaGCAGGGACCAGGAGGGGGAAAGCAAGGACCATGG +
Preference number: 3 (lower is better)
Translates to: RRTLKGAISKQA*QGPGGGKQGPW
Trigger: CCATGGTCCTTGCTTTCCCCCTCCTGGTCCCTGGCATGCTTGCTTGGAGATAGCTCCTTTCAGAGTCCTCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR GCA 72 bp CCTGCTGATCATAGCCTGGACTTCCAGATAACCATATaGTCTCCCGGAGCCCTGGAAAATGGTCTCGTAGCC +
Preference number: 3 (lower is better)
Translates to: PADHSLDFQITI*SPGALENGLVA
Trigger: GGCTACGAGACCATTTTCCAGGGCTCCGGGAGAGCATATGGTTATCTGGAAGTCCAGGCTATGATCAGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CCA 72 bp GCATGCCAGGGACCAGGAGGGGGAAAGCAAGGACCATaGGACAATCAACCTTCTTCATCTGTTCACTGTGGT +
Preference number: 3 (lower is better)
Translates to: ACQGPGGGKQGP*DNQPSSSVHCG
Trigger: ACCACAGTGAACAGATGAAGAAGGTTGATTGTCCCATGGTCCTTGCTTTCCCCCTCCTGGTCCCTGGCATGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR GCA 72 bp TTGGCACTTGGTCTGGAACTGACATCCCTAGGACATTaGTCTCGGTGTGTCCTGACCAGCAGGCTCTGTTTT +
Preference number: 3 (lower is better)
Translates to: LALGLELTSLGH*SRCVLTSRLCF
Trigger: AAAACAGAGCCTGCTGGTCAGGACACACCGAGAGCAATGTCCTAGGGATGTCAGTTCCAGACCAAGTGCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CCA 72 bp GTCCAGGCTAGCCCGCACCTTGAAGCCTTCCTGCTTTaGCTTCCTGATACTATGTGGTACTATGTGGCTTCT +
Preference number: 3 (lower is better)
Translates to: VQASPHLEAFLL*LPDTMWYYVAS
Trigger: AGAAGCCACATAGTACCACATAGTATCAGGAAGCCAAAGCAGGAAGGCTTCAAGGTGCGGGCTAGCCTGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CAA 90 bp AGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGGGGAGGCTAGCCCGCACCTaGAAGCCTTCCTGCTTTGGC +
Preference number: 3 (lower is better)
Translates to: SEFSQGCKYTGSYSLLLGRLART*KPSCFG
Trigger: GCCAAAGCAGGAAGGCTTCAAGGTGCGGGCTAGCCT...CCCCAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CAA 90 bp TCCAAGGCTCCGCTTCTCTACAATGCTATTGAATTCATCAGCCTTTTGCTCCATACTGTCACCTACCCCTaGCCAGCCTGCAAGTGGCCC +
Preference number: 3 (lower is better)
Translates to: SKAPLLYNAIEFISLLLHTVTYP*PACKWP
Trigger: GGGCCACTTGCAGGCTGGCAAGGGGTAGGTGACAGT...ATGGAGCAAAAGGCTGATGAATTCAATAGCATTGTAGAGAAGCGGAGCCTTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CAA 90 bp AAGGAGCTATCTCCAAGCAAGCATGCCAGGGACCAGGAGGGGGAAAGCAAGGACCCTCTGTGCTATTGCTaGTACTATATGTGTGTGTGT +
Preference number: 3 (lower is better)
Translates to: KELSPSKHARDQEGESKDPLCYC*YYMCVC
Trigger: ACACACACACATATAGTACAAGCAATAGCACAGAGG...GTCCTTGCTTTCCCCCTCCTGGTCCCTGGCATGCTTGCTTGGAGATAGCTCCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CAA 90 bp TCCAAGGCTCCGCTTCTCTACAATGCTATTGAATTCATCAGCCTTTTGCTCCATAGTGGCCCAGCCTCCTaGCAAGGGGAAACTTGTGCC +
Preference number: 3 (lower is better)
Translates to: SKAPLLYNAIEFISLLLHSGPAS*QGETCA
Trigger: GGCACAAGTTTCCCCTTGCAAGGAGGCTGGGCCACT...ATGGAGCAAAAGGCTGATGAATTCAATAGCATTGTAGAGAAGCGGAGCCTTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR GCA 72 bp TATCTTCTCTTCTCCATGCTGGTAATCACATGCTTGTaGGTGCGCACGAGTGCACTCATGCGTGCACACACA +
Preference number: 3 (lower is better)
Translates to: YLLFSMLVITCL*VRTSALMRAHT
Trigger: TGTGTGTGCACGCATGAGTGCACTCGTGCGCACGCACAAGCATGTGATTACCAGCATGGAGAAGAGAAGATA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR GCA 72 bp CAGTCGCTGAGAAAGCCAGAATGCCGGGCCGTTTCTTaGTGTTTCTCAGTCTTGTGCACGTGTTCTTGTCTT +
Preference number: 3 (lower is better)
Translates to: QSLRKPECRAVS*CFSVLCTCSCL
Trigger: AAGACAAGAACACGTGCACAAGACTGAGAAACAGCAAGAAACGGCCCGGCATTCTGGCTTTCTCAGCGACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CAA 90 bp GGAACGGAACACTTTCTGAAGAGCAGATCAAGAGATGGGCTCAAAGAGTCTGTGATGCCGGGCCGTTTCTaGCTGTTTCTCAGTCTTGTG +
Preference number: 3 (lower is better)
Translates to: GTEHFLKSRSRDGLKESVMPGRF*LFLSLV
Trigger: CACAAGACTGAGAAACAGCAAGAAACGGCCCGGCAT...CACAGACTCTTTGAGCCCATCTCTTGATCTGCTCTTCAGAAAGTGTTCCGTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CAA 90 bp AGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGGGGAGCCACAAGACCTTGTaGATCAGAGCCTGGGACCCT +
Preference number: 3 (lower is better)
Translates to: SEFSQGCKYTGSYSLLLGSHKTL*IRAWDP
Trigger: AGGGTCCCAGGCTCTGATCAACAAGGTCTTGTGGCT...CCCCAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR TCA 72 bp CAAAGCCTCCAAGGCTCCGCTTCTCTACAATGCTATTaGATTCATCAGCCTTTTGCTCCATGTGGCCCTGTG +
Preference number: 3 (lower is better)
Translates to: QSLQGSASLQCY*IHQPFAPCGPV
Trigger: CACAGGGCCACATGGAGCAAAAGGCTGATGAATTCAATAGCATTGTAGAGAAGCGGAGCCTTGGAGGCTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR GCA 72 bp GTCATGTACGCGGTTGCTTTGTTCTCAGTGAATATCTaGAGCCTCTCTGCTCTGCCACTCTATAGGTCTCAC +
Preference number: 3 (lower is better)
Translates to: VMYAVALFSVNI*SLSALPLYRSH
Trigger: GTGAGACCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAACCGCGTACATGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR GCA 72 bp CGATTTTATCTTCTCTTCTCCATGCTGGTAATCACATaGTTGTGCGTGCGCACGAGTGCACTCATGCGTGCA +
Preference number: 3 (lower is better)
Translates to: RFYLLFSMLVIT*LCVRTSALMRA
Trigger: TGCACGCATGAGTGCACTCGTGCGCACGCACAAGCATGTGATTACCAGCATGGAGAAGAGAAGATAAAATCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CCA 72 bp CACACACTTTCATCTACTTGCTGTTCCAGGGGCAGATaGGTACTGTTTGGCACTTGGTCTGGAACTGACATC +
Preference number: 3 (lower is better)
Translates to: HTLSSTCCSRGR*VLFGTWSGTDI
Trigger: GATGTCAGTTCCAGACCAAGTGCCAAACAGTACCCATCTGCCCCTGGAACAGCAAGTAGATGAAAGTGTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CAA 90 bp CCTTTCTCTGTTATAGAGCTCCCAGCTACAGAGAGATACCCTAGTGAGTTTTCCCCAGCAGGCTCTGTTTaGTTTACCCACCCCACTCAT +
Preference number: 3 (lower is better)
Translates to: PFSVIELPATERYPSEFSPAGSV*FTHPTH
Trigger: ATGAGTGGGGTGGGTAAACAAAACAGAGCCTGCTGG...GGAAAACTCACTAGGGTATCTCTCTGTAGCTGGGAGCTCTATAACAGAGAAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CAA 90 bp TCCAAGGCTCCGCTTCTCTACAATGCTATTGAATTCATCAGCCTTTTGCTCCATAATGGTCTCGTAGCCTaGGAGGGGAGACAGTTGGAG +
Preference number: 3 (lower is better)
Translates to: SKAPLLYNAIEFISLLLHNGLVA*EGRQLE
Trigger: CTCCAACTGTCTCCCCTCCAAGGCTACGAGACCATT...ATGGAGCAAAAGGCTGATGAATTCAATAGCATTGTAGAGAAGCGGAGCCTTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CCA 72 bp GACAATCAACCTTCTTCATCTGTTCACTGTGGTTCTTaGAATGAACGCCCTTCTGGAAGCTCTGAGCAGCTC +
Preference number: 3 (lower is better)
Translates to: DNQPSSSVHCGS*NERPSGSSEQL
Trigger: GAGCTGCTCAGAGCTTCCAGAAGGGCGTTCATTCCAAGAACCACAGTGAACAGATGAAGAAGGTTGATTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CCA 72 bp GCAGATCAAGAGATGGGCTCAAAGAGTCTGTGGGAATaGTTCACTTCTCAATCTGAGCTTAGTAGCCAACCC +
Preference number: 3 (lower is better)
Translates to: ADQEMGSKSLWE*FTSQSELSSQP
Trigger: GGGTTGGCTACTAAGCTCAGATTGAGAAGTGAACCATTCCCACAGACTCTTTGAGCCCATCTCTTGATCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CAA 90 bp CTTACTGCCCCAGCTTTTCTTAACCATTGCTTGGCTTGCTGTAGCCTCTGTCACCGGCAAAGATTATTGTaGGATGTCCTCTTTGCTTGG +
Preference number: 3 (lower is better)
Translates to: LTAPAFLNHCLACCSLCHRQRLL*DVLFAW
Trigger: CCAAGCAAAGAGGACATCCAACAATAATCTTTGCCG...GTGACAGAGGCTACAGCAAGCCAAGCAATGGTTAAGAAAAGCTGGGGCAGTAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CAA 90 bp GGAACGGAACACTTTCTGAAGAGCAGATCAAGAGATGGGCTCAAAGAGTCTGTGGTCGAAAACCAGCAATaGCATCATTGCTGGCCACAA +
Preference number: 3 (lower is better)
Translates to: GTEHFLKSRSRDGLKESVVENQQ*HHCWPQ
Trigger: TTGTGGCCAGCAATGATGCAATTGCTGGTTTTCGAC...CACAGACTCTTTGAGCCCATCTCTTGATCTGCTCTTCAGAAAGTGTTCCGTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CAA 90 bp GGAACGGAACACTTTCTGAAGAGCAGATCAAGAGATGGGCTCAAAGAGTCTGTGTCACTCTTTTTAGGTTaGGTCTCTCTGTGGACCAGG +
Preference number: 3 (lower is better)
Translates to: GTEHFLKSRSRDGLKESVSLFLG*VSLWTR
Trigger: CCTGGTCCACAGAGAGACCAAACCTAAAAAGAGTGA...CACAGACTCTTTGAGCCCATCTCTTGATCTGCTCTTCAGAAAGTGTTCCGTTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CAA 90 bp GTTGCTTTGTTCTCAGTGAATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGCGGCAAAGATTATTGTaGGATGTCCTCTTTGCTTGG +
Preference number: 3 (lower is better)
Translates to: VALFSVNICSLSALPLYRRQRLL*DVLFAW
Trigger: CCAAGCAAAGAGGACATCCAACAATAATCTTTGCCG...CCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CAA 90 bp GGAGGGGGAAAGCAAGGACCATGGGACAATCAACCTTCTTCATCTGTTCACTGTCAACGGCAAAGATTATaGTTGGATGTCCTCTTTGCT +
Preference number: 3 (lower is better)
Translates to: GGGKQGPWDNQPSSSVHCQRQRL*LDVLFA
Trigger: AGCAAAGAGGACATCCAACAATAATCTTTGCCGTTG...ACAGTGAACAGATGAAGAAGGTTGATTGTCCCATGGTCCTTGCTTTCCCCCTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CAA 90 bp CCTAGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGGCACGTGTTCTTGTCTaGGTCACACAGGAAGCTTCA +
Preference number: 3 (lower is better)
Translates to: PSEFSQGCKYTGSYSLLLARVLV*VTQEAS
Trigger: TGAAGCTTCCTGTGTGACCAAGACAAGAACACGTGC...CAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACTAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR TCA 72 bp CACACCTCAAAGTATAGGGCTGAGTCTCTAAATGGGTaGCTGGGCCTGACAAAGAGAGACTTTTACCTCTGT +
Preference number: 3 (lower is better)
Translates to: HTSKYRAESLNG*LGLTKRDFYLC
Trigger: ACAGAGGTAAAAGTCTCTCTTTGTCAGGCCCAGTCACCCATTTAGAGACTCAGCCCTATACTTTGAGGTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CCA 72 bp CTTGAAGCCTTCCTGCTTTGGCTTCCTGATACTATGTaGTACTATGTGGCTTCTAGGCTCATAGTACCTTCC +
Preference number: 3 (lower is better)
Translates to: LEAFLLWLPDTM*YYVASRLIVPS
Trigger: GGAAGGTACTATGAGCCTAGAAGCCACATAGTACCACATAGTATCAGGAAGCCAAAGCAGGAAGGCTTCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CAA 90 bp CTTGTGCACGTGTTCTTGTCTTGGTCACACAGGAAGCTTCAGATGCTGTGCTGTCATCCTTCTTCCATTTaGAATCTACATCCTCAAACC +
Preference number: 3 (lower is better)
Translates to: LVHVFLSWSHRKLQMLCCHPSSI*NLHPQT
Trigger: GGTTTGAGGATGTAGATTCAAAATGGAAGAAGGATG...ACAGCACAGCATCTGAAGCTTCCTGTGTGACCAAGACAAGAACACGTGCACAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CAA 90 bp AGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGGGGATGTACGCGGTTGCTTaGTTCTCAGTGAATATCTGC +
Preference number: 3 (lower is better)
Translates to: SEFSQGCKYTGSYSLLLGMYAVA*FSVNIC
Trigger: GCAGATATTCACTGAGAACAAAGCAACCGCGTACAT...CCCCAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CAA 90 bp CAGCTCTCTGATCTTCCTGAAGTTGCAGGAGGATTTCCTTCACAAGGTAGGTTTATGTACGCGGTTGCTTaGTTCTCAGTGAATATCTGC +
Preference number: 3 (lower is better)
Translates to: QLSDLPEVAGGFPSQGRFMYAVA*FSVNIC
Trigger: GCAGATATTCACTGAGAACAAAGCAACCGCGTACAT...AAACCTACCTTGTGAAGGAAATCCTCCTGCAACTTCAGGAAGATCAGAGAGCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CAA 90 bp CAGCTCTCTGATCTTCCTGAAGTTGCAGGAGGATTTCCTTCACAAGGTAGGTTTTTTCTTAACCATTGCTaGGCTTGCTGTAGCCTCTGT +
Preference number: 3 (lower is better)
Translates to: QLSDLPEVAGGFPSQGRFFLNHC*ACCSLC
Trigger: ACAGAGGCTACAGCAAGCCAAGCAATGGTTAAGAAA...AAACCTACCTTGTGAAGGAAATCCTCCTGCAACTTCAGGAAGATCAGAGAGCTG
46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR GCA 72 bp TTCTTGTCTTGGTCACACAGGAAGCTTCAGATGCTGTaGTGTATAAGAAAGTTCAAAGGAAGCAAGGGTGGC +
Preference number: 3 (lower is better)
Translates to: FLSWSHRKLQML*CIRKFKGSKGG
Trigger: GCCACCCTTGCTTCCTTTGAACTTTCTTATACAGCACAGCATCTGAAGCTTCCTGTGTGACCAAGACAAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR GCA 72 bp CGCTTCTCTACAATGCTATTGAATTCATCAGCCTTTTaGTCCATGTGGCCCTGTGGGTTCCACATAGATGTT +
Preference number: 3 (lower is better)
Translates to: RFSTMLLNSSAF*SMWPCGFHIDV
Trigger: AACATCTATGTGGAACCCACAGGGCCACATGGAGCAAAAGGCTGATGAATTCAATAGCATTGTAGAGAAGCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CCA 72 bp TTGCTGTTTCTCAGTCTTGTGCACGTGTTCTTGTCTTaGTCACACAGGAAGCTTCAGATGCTGTGCTGTATA +
Preference number: 3 (lower is better)
Translates to: LLFLSLVHVFLS*SHRKLQMLCCI
Trigger: TATACAGCACAGCATCTGAAGCTTCCTGTGTGACCAAGACAAGAACACGTGCACAAGACTGAGAAACAGCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CCA 72 bp GTGGCCCAGCCTCCTTGCAAGGGGAAACTTGTGCCTTaGATAAAATCAGTGCTTCACAGAAATTTGAGTAAA +
Preference number: 3 (lower is better)
Translates to: VAQPPCKGKLVP*IKSVLHRNLSK
Trigger: TTTACTCAAATTTCTGTGAAGCACTGATTTTATCCAAGGCACAAGTTTCCCCTTGCAAGGAGGCTGGGCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CAA 90 bp AATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGTCTCACACCTCAAAGTATCCTCTGTGCTATTGCTaGTACTATATGTGTGTGTGT +
Preference number: 3 (lower is better)
Translates to: NICSLSALPLYRSHTSKYPLCYC*YYMCVC
Trigger: ACACACACACATATAGTACAAGCAATAGCACAGAGG...ATACTTTGAGGTGTGAGACCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CAA 90 bp ACAGATGACTTGGTAATCATAAAAGAACAGGAAAGACGAGAGAAAGCGAGGGTAGCACGTGTTCTTGTCTaGGTCACACAGGAAGCTTCA +
Preference number: 3 (lower is better)
Translates to: TDDLVIIKEQERREKARVARVLV*VTQEAS
Trigger: TGAAGCTTCCTGTGTGACCAAGACAAGAACACGTGC...TACCCTCGCTTTCTCTCGTCTTTCCTGTTCTTTTATGATTACCAAGTCATCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CCA 72 bp TGCCTAATTGCATTAAACTTGGACTTTCTGTTCACATaGACCCAGGAAGCACTGGGACGTCTACCCAATTTA +
Preference number: 3 (lower is better)
Translates to: CLIALNLDFLFT*TQEALGRLPNL
Trigger: TAAATTGGGTAGACGTCCCAGTGCTTCCTGGGTCCATGTGAACAGAAAGTCCAAGTTTAATGCAATTAGGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CAA 90 bp AGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGGGGAGGACAGAAAGCAACTaGACAGTCTATAATTCAGAG +
Preference number: 3 (lower is better)
Translates to: SEFSQGCKYTGSYSLLLGRTESN*TVYNSE
Trigger: CTCTGAATTATAGACTGTCAAGTTGCTTTCTGTCCT...CCCCAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CAA 90 bp CCTTTCTCTGTTATAGAGCTCCCAGCTACAGAGAGATACCCTAGTGAGTTTTCCAGGACAGAAAGCAACTaGACAGTCTATAATTCAGAG +
Preference number: 3 (lower is better)
Translates to: PFSVIELPATERYPSEFSRTESN*TVYNSE
Trigger: CTCTGAATTATAGACTGTCAAGTTGCTTTCTGTCCT...GGAAAACTCACTAGGGTATCTCTCTGTAGCTGGGAGCTCTATAACAGAGAAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR GCA 72 bp ATGGACTTTTCTGAATGGAACACCCTCCTGCCTAATTaGATTAAACTTGGACTTTCTGTTCACATGGACCCA +
Preference number: 3 (lower is better)
Translates to: MDFSEWNTLLPN*IKLGLSVHMDP
Trigger: TGGGTCCATGTGAACAGAAAGTCCAAGTTTAATGCAATTAGGCAGGAGGGTGTTCCATTCAGAAAAGTCCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CCA 72 bp GCTGTGCTGTATAAGAAAGTTCAAAGGAAGCAAGGGTaGCTTTTCAGCTTCTTACGTCAGAATGCTTTTCCT +
Preference number: 3 (lower is better)
Translates to: AVLYKKVQRKQG*LFSFLRQNAFP
Trigger: AGGAAAAGCATTCTGACGTAAGAAGCTGAAAAGCCACCCTTGCTTCCTTTGAACTTTCTTATACAGCACAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CCA 72 bp ACAATGCTATTGAATTCATCAGCCTTTTGCTCCATGTaGCCCTGTGGGTTCCACATAGATGTTCTGAAAGTT +
Preference number: 3 (lower is better)
Translates to: TMLLNSSAFCSM*PCGFHIDVLKV
Trigger: AACTTTCAGAACATCTATGTGGAACCCACAGGGCCACATGGAGCAAAAGGCTGATGAATTCAATAGCATTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CAA 90 bp ATTGCATTAAACTTGGACTTTCTGTTCACATGGACCCAGGAAGCACTGGGACGTAATAATTATAGGCATTaGAGGAGGACTCTGAAAGGA +
Preference number: 3 (lower is better)
Translates to: IALNLDFLFTWTQEALGRNNYRH*RRTLKG
Trigger: TCCTTTCAGAGTCCTCCTCAAATGCCTATAATTATT...ACGTCCCAGTGCTTCCTGGGTCCATGTGAACAGAAAGTCCAAGTTTAATGCAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR GCA 72 bp TTGATAAAGCTTACTGCCCCAGCTTTTCTTAACCATTaGTTGGCTTGCTGTAGCCTCTGTCACAGATATAAT +
Preference number: 3 (lower is better)
Translates to: LIKLTAPAFLNH*LACCSLCHRYN
Trigger: ATTATATCTGTGACAGAGGCTACAGCAAGCCAAGCAATGGTTAAGAAAAGCTGGGGCAGTAAGCTTTATCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CAA 90 bp ACAGATGACTTGGTAATCATAAAAGAACAGGAAAGACGAGAGAAAGCGAGGGTACAACGGCAAAGATTATaGTTGGATGTCCTCTTTGCT +
Preference number: 3 (lower is better)
Translates to: TDDLVIIKEQERREKARVQRQRL*LDVLFA
Trigger: AGCAAAGAGGACATCCAACAATAATCTTTGCCGTTG...TACCCTCGCTTTCTCTCGTCTTTCCTGTTCTTTTATGATTACCAAGTCATCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR-3UTR CAA 90 bp TCCAAGGCTCCGCTTCTCTACAATGCTATTGAATTCATCAGCCTTTTGCTCCATAATAATTATAGGCATTaGAGGAGGACTCTGAAAGGA +
Preference number: 3 (lower is better)
Translates to: SKAPLLYNAIEFISLLLHNNYRH*RRTLKG
Trigger: TCCTTTCAGAGTCCTCCTCAAATGCCTATAATTATT...ATGGAGCAAAAGGCTGATGAATTCAATAGCATTGTAGAGAAGCGGAGCCTTGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR TCA 72 bp TGCAAGCCTTTCAAGTATCAGGAAGTACTGTTTTCATaGCTGCATCCTTCTTCCATTTTGAATCTACATCCT +
Preference number: 3 (lower is better)
Translates to: CKPFKYQEVLFS*LHPSSILNLHP
Trigger: AGGATGTAGATTCAAAATGGAAGAAGGATGCAGTCATGAAAACAGTACTTCCTGATACTTGAAAGGCTTGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR TCA 72 bp TATAATGTTAGTTCTTTAGGGCAGAATCAGATGCAGTaGGTGCTATACTTTAAGCAAGAACAGAAAGCTGTT +
Preference number: 3 (lower is better)
Translates to: YNVSSLGQNQMQ*VLYFKQEQKAV
Trigger: AACAGCTTTCTGTTCTTGCTTAAAGTATAGCACTCACTGCATCTGATTCTGCCCTAAAGAACTAACATTATA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CCA 72 bp ATGGCTTCTAGAACACTACAATTCAGTAAAACCTATTaGTCAATGGTATTCTACTCTCAGCCAAAATATGTC +
Preference number: 3 (lower is better)
Translates to: MASRTLQFSKTY*SMVFYSQPKYV
Trigger: GACATATTTTGGCTGAGAGTAGAATACCATTGACCAATAGGTTTTACTGAATTGTAGTGTTCTAGAAGCCAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp GGACCAGGAGGGGGAAAGCAAGGACCATGGGACAATCAACCTTCTTCATCTGTTCGCTGCAGCGCCTGCTaGGTGAGCTCGCGGACCCGG +
Preference number: 4 (lower is better)
Translates to: GPGGGKQGPWDNQPSSSVRCSAC*VSSRTR
Trigger: CCGGGTCCGCGAGCTCACCCAGCAGGCGCTGCAGCG...AACAGATGAAGAAGGTTGATTGTCCCATGGTCCTTGCTTTCCCCCTCCTGGTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp CTTACTGCCCCAGCTTTTCTTAACCATTGCTTGGCTTGCTGTAGCCTCTGTCACGCAGCGCCTGCTGGGTaGGCTCGCGGACCCGGAGCT +
Preference number: 4 (lower is better)
Translates to: LTAPAFLNHCLACCSLCHAAPAG*ARGPGA
Trigger: AGCTCCGGGTCCGCGAGCTCACCCAGCAGGCGCTGC...GTGACAGAGGCTACAGCAAGCCAAGCAATGGTTAAGAAAAGCTGGGGCAGTAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp AAGGAGCTATCTCCAAGCAAGCATGCCAGGGACCAGGAGGGGGAAAGCAAGGACCGGGGACTCTTGCTTTaGTGCGGGGAGGCTGGCTCT +
Preference number: 4 (lower is better)
Translates to: KELSPSKHARDQEGESKDRGLLL*CGEAGS
Trigger: AGAGCCAGCCTCCCCGCAGCAAAGCAAGAGTCCCCG...GTCCTTGCTTTCCCCCTCCTGGTCCCTGGCATGCTTGCTTGGAGATAGCTCCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CAA 72 bp TGGTGGCCAGGGAACCTTCAGGGCAGCCACAAGACCTaGTTGATCAGAGCCTGGGACCCTCCACTCCATGGA +
Preference number: 4 (lower is better)
Translates to: WWPGNLQGSHKT*LIRAWDPPLHG
Trigger: TCCATGGAGTGGAGGGTCCCAGGCTCTGATCAACAAGGTCTTGTGGCTGCCCTGAAGGTTCCCTGGCCACCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp AAGCAAGAGCCACTCTGTACCACGGAACACCTTAGCCCAGAGAAGGCCTTAGGTCTCGGAAGCTCTCGTTaGAGCCTCGGCCCCGCACCA +
Preference number: 4 (lower is better)
Translates to: KQEPLCTTEHLSPEKALGLGSSR*SLGPAP
Trigger: TGGTGCGGGGCCGAGGCTGCAACGAGAGCTTCCGAG...ACCTAAGGCCTTCTCTGGGCTAAGGTGTTCCGTGGTACAGAGTGGCTCTTGCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp CAGCTCTCTGATCTTCCTGAAGTTGCAGGAGGATTTCCTTCACAAGGTAGGTTTGCAGCGCCTGCTGGGTaGGCTCGCGGACCCGGAGCT +
Preference number: 4 (lower is better)
Translates to: QLSDLPEVAGGFPSQGRFAAPAG*ARGPGA
Trigger: AGCTCCGGGTCCGCGAGCTCACCCAGCAGGCGCTGC...AAACCTACCTTGTGAAGGAAATCCTCCTGCAACTTCAGGAAGATCAGAGAGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp CTTGTGCACGTGTTCTTGTCTTGGTCACACAGGAAGCTTCAGATGCTGTGCTGTTACCGCTGCAGCGCCTaGTGGGTGAGCTCGCGGACC +
Preference number: 4 (lower is better)
Translates to: LVHVFLSWSHRKLQMLCCYRCSA*WVSSRT
Trigger: GGTCCGCGAGCTCACCCAGCAGGCGCTGCAGCGGTA...ACAGCACAGCATCTGAAGCTTCCTGTGTGACCAAGACAAGAACACGTGCACAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CCTTTCTCTGTTATAGAGCTCCCAGCTACAGAGAGATACCCTAGTGAGTTTTCCCGCTGCAGCGCCTGCTaGGTGAGCTCGCGGACCCGG +
Preference number: 4 (lower is better)
Translates to: PFSVIELPATERYPSEFSRCSAC*VSSRTR
Trigger: CCGGGTCCGCGAGCTCACCCAGCAGGCGCTGCAGCG...GGAAAACTCACTAGGGTATCTCTCTGTAGCTGGGAGCTCTATAACAGAGAAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CATGTACGCGGTTGCTTTGTTCTCAGTGAATATCTGCAGCCTCTCTGCTCTGCCGCCCCGCACCATGTGTaGTCTGGGCCTGTGGAAGGG +
Preference number: 4 (lower is better)
Translates to: HVRGCFVLSEYLQPLCSAAPHHV*SGPVEG
Trigger: CCCTTCCACAGGCCCAGACCACACATGGTGCGGGGC...GGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAACCGCGTACATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CAA 72 bp TGCTCTCCCGGAGCCCTGGAAAATGGTCTCGTAGCCTaGGAGGGGAGACAGTTGGAGGGATGTTACACAGGC +
Preference number: 4 (lower is better)
Translates to: CSPGALENGLVA*EGRQLEGCYTG
Trigger: GCCTGTGTAACATCCCTCCAACTGTCTCCCCTCCAAGGCTACGAGACCATTTTCCAGGGCTCCGGGAGAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp AAGGAGCTATCTCCAAGCAAGCATGCCAGGGACCAGGAGGGGGAAAGCAAGGACGCGGGCAATGACCAATaGCACTGTCTCTCCCTGCTT +
Preference number: 4 (lower is better)
Translates to: KELSPSKHARDQEGESKDAGNDQ*HCLSLL
Trigger: AAGCAGGGAGAGACAGTGTCATTGGTCATTGCCCGC...GTCCTTGCTTTCCCCCTCCTGGTCCCTGGCATGCTTGCTTGGAGATAGCTCCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp GTTGCTTTGTTCTCAGTGAATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGTACCGCTGCAGCGCCTaGTGGGTGAGCTCGCGGACC +
Preference number: 4 (lower is better)
Translates to: VALFSVNICSLSALPLYRYRCSA*WVSSRT
Trigger: GGTCCGCGAGCTCACCCAGCAGGCGCTGCAGCGGTA...CCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp GGAGGGGGAAAGCAAGGACCATGGGACAATCAACCTTCTTCATCTGTTCACTGTCTCGGAAGCTCTCGTTaGAGCCTCGGCCCCGCACCA +
Preference number: 4 (lower is better)
Translates to: GGGKQGPWDNQPSSSVHCLGSSR*SLGPAP
Trigger: TGGTGCGGGGCCGAGGCTGCAACGAGAGCTTCCGAG...ACAGTGAACAGATGAAGAAGGTTGATTGTCCCATGGTCCTTGCTTTCCCCCTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp AAGGAGCTATCTCCAAGCAAGCATGCCAGGGACCAGGAGGGGGAAAGCAAGGACAGCGGAGGTTGTGTGTaGTCCCATCTGGACCCTTTC +
Preference number: 4 (lower is better)
Translates to: KELSPSKHARDQEGESKDSGGCV*SHLDPF
Trigger: GAAAGGGTCCAGATGGGAGCACACACAACCTCCGCT...GTCCTTGCTTTCCCCCTCCTGGTCCCTGGCATGCTTGCTTGGAGATAGCTCCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp ATTGCATTAAACTTGGACTTTCTGTTCACATGGACCCAGGAAGCACTGGGACGTTCGCGGACCCGGAGCTaGCCGTCCTTGCAGGGCACC +
Preference number: 4 (lower is better)
Translates to: IALNLDFLFTWTQEALGRSRTRS*PSLQGT
Trigger: GGTGCCCTGCAAGGACGGCCAGCTCCGGGTCCGCGA...ACGTCCCAGTGCTTCCTGGGTCCATGTGAACAGAAAGTCCAAGTTTAATGCAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CAGCTCTCTGATCTTCCTGAAGTTGCAGGAGGATTTCCTTCACAAGGTAGGTTTTCGCGGACCCGGAGCTaGCCGTCCTTGCAGGGCACC +
Preference number: 4 (lower is better)
Translates to: QLSDLPEVAGGFPSQGRFSRTRS*PSLQGT
Trigger: GGTGCCCTGCAAGGACGGCCAGCTCCGGGTCCGCGA...AAACCTACCTTGTGAAGGAAATCCTCCTGCAACTTCAGGAAGATCAGAGAGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CTTACTGCCCCAGCTTTTCTTAACCATTGCTTGGCTTGCTGTAGCCTCTGTCACGGCTGGGCATCAGCATaGGGCCCTGGTGCTGGGTCA +
Preference number: 4 (lower is better)
Translates to: LTAPAFLNHCLACCSLCHGWASA*GPGAGS
Trigger: TGACCCAGCACCAGGGCCCCATGCTGATGCCCAGCC...GTGACAGAGGCTACAGCAAGCCAAGCAATGGTTAAGAAAAGCTGGGGCAGTAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp AAGCAAGAGCCACTCTGTACCACGGAACACCTTAGCCCAGAGAAGGCCTTAGGTCTTGCAGTGCTTGGCTaGGCATCAGCATGGGGCCCT +
Preference number: 4 (lower is better)
Translates to: KQEPLCTTEHLSPEKALGLAVLG*ASAWGP
Trigger: AGGGCCCCATGCTGATGCCCAGCCAAGCACTGCAAG...ACCTAAGGCCTTCTCTGGGCTAAGGTGTTCCGTGGTACAGAGTGGCTCTTGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp AAGCAAGAGCCACTCTGTACCACGGAACACCTTAGCCCAGAGAAGGCCTTAGGTTTGCTGCGGGGAGGCTaGCTCTTCTCCTTCAGGGCT +
Preference number: 4 (lower is better)
Translates to: KQEPLCTTEHLSPEKALGLLRGG*LFSFRA
Trigger: AGCCCTGAAGGAGAAGAGCCAGCCTCCCCGCAGCAA...ACCTAAGGCCTTCTCTGGGCTAAGGTGTTCCGTGGTACAGAGTGGCTCTTGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CTTGTGCACGTGTTCTTGTCTTGGTCACACAGGAAGCTTCAGATGCTGTGCTGTGCCCCGCACCATGTGTaGTCTGGGCCTGTGGAAGGG +
Preference number: 4 (lower is better)
Translates to: LVHVFLSWSHRKLQMLCCAPHHV*SGPVEG
Trigger: CCCTTCCACAGGCCCAGACCACACATGGTGCGGGGC...ACAGCACAGCATCTGAAGCTTCCTGTGTGACCAAGACAAGAACACGTGCACAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp AAGCAAGAGCCACTCTGTACCACGGAACACCTTAGCCCAGAGAAGGCCTTAGGTTGCTGCCAAACCCCATaGGAGGAGAGAGTGAGGGAG +
Preference number: 4 (lower is better)
Translates to: KQEPLCTTEHLSPEKALGCCQTP*EERVRE
Trigger: CTCCCTCACTCTCTCCTCTCATGGGGTTTGGCAGCA...ACCTAAGGCCTTCTCTGGGCTAAGGTGTTCCGTGGTACAGAGTGGCTCTTGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp ATTGCATTAAACTTGGACTTTCTGTTCACATGGACCCAGGAAGCACTGGGACGTGGAGCTGGCCGTCCTTaGAGGGCACCACGATGCCCG +
Preference number: 4 (lower is better)
Translates to: IALNLDFLFTWTQEALGRGAGRP*RAPRCP
Trigger: CGGGCATCGTGGTGCCCTGCAAGGACGGCCAGCTCC...ACGTCCCAGTGCTTCCTGGGTCCATGTGAACAGAAAGTCCAAGTTTAATGCAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp AAGCAAGAGCCACTCTGTACCACGGAACACCTTAGCCCAGAGAAGGCCTTAGGTCAGACCATCCGCGTCTaGCTCTTCTGGCCCATCGTA +
Preference number: 4 (lower is better)
Translates to: KQEPLCTTEHLSPEKALGQTIRV*LFWPIV
Trigger: TACGATGGGCCAGAAGAGGCAGACGCGGATGGTCTG...ACCTAAGGCCTTCTCTGGGCTAAGGTGTTCCGTGGTACAGAGTGGCTCTTGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CATGTACGCGGTTGCTTTGTTCTCAGTGAATATCTGCAGCCTCTCTGCTCTGCCCTGCTGAGCCTCCCCTaGGTAAGGATGCGTACTGCC +
Preference number: 4 (lower is better)
Translates to: HVRGCFVLSEYLQPLCSALLSLP*VRMRTA
Trigger: GGCAGTACGCATCCTTACCCAGGGGAGGCTCAGCAG...GGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAACCGCGTACATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp CTTGTGCACGTGTTCTTGTCTTGGTCACACAGGAAGCTTCAGATGCTGTGCTGTCCGGCCACTCAGGGATaGAAAGAAGGGCACCACGTG +
Preference number: 4 (lower is better)
Translates to: LVHVFLSWSHRKLQMLCCPATQG*KEGHHV
Trigger: CACGTGGTGCCCTTCTTTTCATCCCTGAGTGGCCGG...ACAGCACAGCATCTGAAGCTTCCTGTGTGACCAAGACAAGAACACGTGCACAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp CAGCTCTCTGATCTTCCTGAAGTTGCAGGAGGATTTCCTTCACAAGGTAGGTTTAAGGGCCCTTTGTGCTaGTGGGCTGGTGGGGGTGGG +
Preference number: 4 (lower is better)
Translates to: QLSDLPEVAGGFPSQGRFKGPLC*WAGGGG
Trigger: CCCACCCCCACCAGCCCATCAGCACAAAGGGCCCTT...AAACCTACCTTGTGAAGGAAATCCTCCTGCAACTTCAGGAAGATCAGAGAGCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp AAGGAGCTATCTCCAAGCAAGCATGCCAGGGACCAGGAGGGGGAAAGCAAGGACGAGGAACATCTTGTCTaGAGGGCCCTTTGTGCTGAT +
Preference number: 4 (lower is better)
Translates to: KELSPSKHARDQEGESKDEEHLV*RALCAD
Trigger: ATCAGCACAAAGGGCCCTTCAGACAAGATGTTCCTC...GTCCTTGCTTTCCCCCTCCTGGTCCCTGGCATGCTTGCTTGGAGATAGCTCCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp CTTACTGCCCCAGCTTTTCTTAACCATTGCTTGGCTTGCTGTAGCCTCTGTCACGGGGGATCTCCAAGGTaGGCTGCTCGCTTGACTCCA +
Preference number: 4 (lower is better)
Translates to: LTAPAFLNHCLACCSLCHGGSPR*AARLTP
Trigger: TGGAGTCAAGCGAGCAGCTCACCTTGGAGATCCCCC...GTGACAGAGGCTACAGCAAGCCAAGCAATGGTTAAGAAAAGCTGGGGCAGTAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp GGAACGGAACACTTTCTGAAGAGCAGATCAAGAGATGGGCTCAAAGAGTCTGTGGTCTTCAGGTACCGCTaGAGCGCCTGCTGGGTGAGC +
Preference number: 4 (lower is better)
Translates to: GTEHFLKSRSRDGLKESVVFRYR*SACWVS
Trigger: GCTCACCCAGCAGGCGCTGCAGCGGTACCTGAAGAC...CACAGACTCTTTGAGCCCATCTCTTGATCTGCTCTTCAGAAAGTGTTCCGTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp CTTACTGCCCCAGCTTTTCTTAACCATTGCTTGGCTTGCTGTAGCCTCTGTCACAGCATGGGGCCCTGGTaGTGGGTCACTGCTTCTCCT +
Preference number: 4 (lower is better)
Translates to: LTAPAFLNHCLACCSLCHSMGPW*WVTASP
Trigger: AGGAGAAGCAGTGACCCAGCACCAGGGCCCCATGCT...GTGACAGAGGCTACAGCAAGCCAAGCAATGGTTAAGAAAAGCTGGGGCAGTAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp GTTGCTTTGTTCTCAGTGAATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGGAACCCGGGGACTCTTaGTTTGCTGCGGGGAGGCTG +
Preference number: 4 (lower is better)
Translates to: VALFSVNICSLSALPLYREPGDS*FAAGRL
Trigger: CAGCCTCCCCGCAGCAAAGCAAGAGTCCCCGGGTTC...CCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp AAGCAAGAGCCACTCTGTACCACGGAACACCTTAGCCCAGAGAAGGCCTTAGGTAGCGGAGGTTGTGTGTaGTCCCATCTGGACCCTTTC +
Preference number: 4 (lower is better)
Translates to: KQEPLCTTEHLSPEKALGSGGCV*SHLDPF
Trigger: GAAAGGGTCCAGATGGGAGCACACACAACCTCCGCT...ACCTAAGGCCTTCTCTGGGCTAAGGTGTTCCGTGGTACAGAGTGGCTCTTGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp AATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGTCTCACACCTCAAAGTATGCTCCCTCGGGGCCCTaGTCTGCCCATCTCCTGGTA +
Preference number: 4 (lower is better)
Translates to: NICSLSALPLYRSHTSKYAPSGP*SAHLLV
Trigger: TACCAGGAGATGGGCAGAGCAGGGCCCCGAGGGAGC...ATACTTTGAGGTGTGAGACCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CATGTACGCGGTTGCTTTGTTCTCAGTGAATATCTGCAGCCTCTCTGCTCTGCCATGGGGCCCTGGTGCTaGGTCACTGCTTCTCCTAAC +
Preference number: 4 (lower is better)
Translates to: HVRGCFVLSEYLQPLCSAMGPWC*VTASPN
Trigger: GTTAGGAGAAGCAGTGACCCAGCACCAGGGCCCCAT...GGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAACCGCGTACATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp GGAGGGGGAAAGCAAGGACCATGGGACAATCAACCTTCTTCATCTGTTCACTGTTTCCAGAGCAGGATGTaGTGGCGGGGACGGTGGTAC +
Preference number: 4 (lower is better)
Translates to: GGGKQGPWDNQPSSSVHCFQSRM*WRGRWY
Trigger: GTACCACCGTCCCCGCCACCACATCCTGCTCTGGAA...ACAGTGAACAGATGAAGAAGGTTGATTGTCCCATGGTCCTTGCTTTCCCCCTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CATGTACGCGGTTGCTTTGTTCTCAGTGAATATCTGCAGCCTCTCTGCTCTGCCATGGGCTGGTGGGGGTaGGTAGTACTGTGGGTATCG +
Preference number: 4 (lower is better)
Translates to: HVRGCFVLSEYLQPLCSAMGWWG*VVLWVS
Trigger: CGATACCCACAGTACTACCCACCCCCACCAGCCCAT...GGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAACCGCGTACATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp GGAGGGGGAAAGCAAGGACCATGGGACAATCAACCTTCTTCATCTGTTCACTGTTGCTGCCAAACCCCATaGGAGGAGAGAGTGAGGGAG +
Preference number: 4 (lower is better)
Translates to: GGGKQGPWDNQPSSSVHCCCQTP*EERVRE
Trigger: CTCCCTCACTCTCTCCTCTCATGGGGTTTGGCAGCA...ACAGTGAACAGATGAAGAAGGTTGATTGTCCCATGGTCCTTGCTTTCCCCCTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp GGAGGGGGAAAGCAAGGACCATGGGACAATCAACCTTCTTCATCTGTTCACTGTCGATCCGCCAGCGACTaGACTTTGCCTTCATCTGGC +
Preference number: 4 (lower is better)
Translates to: GGGKQGPWDNQPSSSVHCRSASD*TLPSSG
Trigger: GCCAGATGAAGGCAAAGTTCAGTCGCTGGCGGATCG...ACAGTGAACAGATGAAGAAGGTTGATTGTCCCATGGTCCTTGCTTTCCCCCTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp CCTAGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGAAGGGCCCTTTGTGCTaGTGGGCTGGTGGGGGTGGG +
Preference number: 4 (lower is better)
Translates to: PSEFSQGCKYTGSYSLLLKGPLC*WAGGGG
Trigger: CCCACCCCCACCAGCCCATCAGCACAAAGGGCCCTT...CAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACTAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp CTTGTGCACGTGTTCTTGTCTTGGTCACACAGGAAGCTTCAGATGCTGTGCTGTGGTGAGCTGCTCGCTTaGCTCCAGGGAGAGAGCATA +
Preference number: 4 (lower is better)
Translates to: LVHVFLSWSHRKLQMLCCGELLA*LQGESI
Trigger: TATGCTCTCTCCCTGGAGTCAAGCGAGCAGCTCACC...ACAGCACAGCATCTGAAGCTTCCTGTGTGACCAAGACAAGAACACGTGCACAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp CAGCTCTCTGATCTTCCTGAAGTTGCAGGAGGATTTCCTTCACAAGGTAGGTTTTGCAGGGCACCACGATaGCCGTCCTCCCGAAGCACA +
Preference number: 4 (lower is better)
Translates to: QLSDLPEVAGGFPSQGRFCRAPR*PSSRST
Trigger: TGTGCTTCGGGAGGACGGGCATCGTGGTGCCCTGCA...AAACCTACCTTGTGAAGGAAATCCTCCTGCAACTTCAGGAAGATCAGAGAGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp GATTGTGTTGACTGTGTACAACACAAAGCCAAGGTCTGGAGAAGCTTTTCTGTAGGAGCTGGCCGTCCTTaGAGGGCACCACGATGCCCG +
Preference number: 4 (lower is better)
Translates to: DCVDCVQHKAKVWRSFSVGAGRP*RAPRCP
Trigger: CGGGCATCGTGGTGCCCTGCAAGGACGGCCAGCTCC...TACAGAAAAGCTTCTCCAGACCTTGGCTTTGTGTTGTACACAGTCAACACAATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp AATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGTCTCACACCTCAAAGTATGTCTTCAGGTACCGCTaGAGCGCCTGCTGGGTGAGC +
Preference number: 4 (lower is better)
Translates to: NICSLSALPLYRSHTSKYVFRYR*SACWVS
Trigger: GCTCACCCAGCAGGCGCTGCAGCGGTACCTGAAGAC...ATACTTTGAGGTGTGAGACCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp CAGCTCTCTGATCTTCCTGAAGTTGCAGGAGGATTTCCTTCACAAGGTAGGTTTCGGGGACTCTTGCTTTaGTGCGGGGAGGCTGGCTCT +
Preference number: 4 (lower is better)
Translates to: QLSDLPEVAGGFPSQGRFRGLLL*CGEAGS
Trigger: AGAGCCAGCCTCCCCGCAGCAAAGCAAGAGTCCCCG...AAACCTACCTTGTGAAGGAAATCCTCCTGCAACTTCAGGAAGATCAGAGAGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp TCCAAGGCTCCGCTTCTCTACAATGCTATTGAATTCATCAGCCTTTTGCTCCATGCTCCCTCGGGGCCCTaGTCTGCCCATCTCCTGGTA +
Preference number: 4 (lower is better)
Translates to: SKAPLLYNAIEFISLLLHAPSGP*SAHLLV
Trigger: TACCAGGAGATGGGCAGAGCAGGGCCCCGAGGGAGC...ATGGAGCAAAAGGCTGATGAATTCAATAGCATTGTAGAGAAGCGGAGCCTTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp GGAGGGGGAAAGCAAGGACCATGGGACAATCAACCTTCTTCATCTGTTCACTGTTGTCTCGAAAGCATCTaGGCTCTGCCGATCCGCAGG +
Preference number: 4 (lower is better)
Translates to: GGGKQGPWDNQPSSSVHCCLESI*ALPIRR
Trigger: CCTGCGGATCGGCAGAGCCCAGATGCTTTCGAGACA...ACAGTGAACAGATGAAGAAGGTTGATTGTCCCATGGTCCTTGCTTTCCCCCTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp TCCAAGGCTCCGCTTCTCTACAATGCTATTGAATTCATCAGCCTTTTGCTCCATGGCTGGGCATCAGCATaGGGCCCTGGTGCTGGGTCA +
Preference number: 4 (lower is better)
Translates to: SKAPLLYNAIEFISLLLHGWASA*GPGAGS
Trigger: TGACCCAGCACCAGGGCCCCATGCTGATGCCCAGCC...ATGGAGCAAAAGGCTGATGAATTCAATAGCATTGTAGAGAAGCGGAGCCTTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp GTTGCTTTGTTCTCAGTGAATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGCAGGCTTGCAGTGCTTaGCTGGGCATCAGCATGGGG +
Preference number: 4 (lower is better)
Translates to: VALFSVNICSLSALPLYRQACSA*LGISMG
Trigger: CCCCATGCTGATGCCCAGCCAAGCACTGCAAGCCTG...CCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp GTTGCTTTGTTCTCAGTGAATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGAAGAAGGGCACCACGTaGATCCCCAGGGGGTCTCCT +
Preference number: 4 (lower is better)
Translates to: VALFSVNICSLSALPLYRKKGTT*IPRGSP
Trigger: AGGAGACCCCCTGGGGATCCACGTGGTGCCCTTCTT...CCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp GTTGCTTTGTTCTCAGTGAATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGGTGGTCTGGAGACAGTaGACGCCCATCCCGAGGGTA +
Preference number: 4 (lower is better)
Translates to: VALFSVNICSLSALPLYRVVWRQ*TPIPRV
Trigger: TACCCTCGGGATGGGCGTCCACTGTCTCCAGACCAC...CCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075374.10
3UTR CAA 72 bp CCAGAATGCCGGGCCGTTTCTTGCTGTTTCTCAGTCTaGTGCACGTGTTCTTGTCTTGGTCACACAGGAAGC +
Preference number: 4 (lower is better)
Translates to: PECRAVSCCFSV*CTCSCLGHTGS
Trigger: GCTTCCTGTGTGACCAAGACAAGAACACGTGCACAAGACTGAGAAACAGCAAGAAACGGCCCGGCATTCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp CTTGTGCACGTGTTCTTGTCTTGGTCACACAGGAAGCTTCAGATGCTGTGCTGTCTTCAATGCCTCGGATaGAGAGTCCTAGGATCCGGC +
Preference number: 4 (lower is better)
Translates to: LVHVFLSWSHRKLQMLCCLQCLG*RVLGSG
Trigger: GCCGGATCCTAGGACTCTTCATCCGAGGCATTGAAG...ACAGCACAGCATCTGAAGCTTCCTGTGTGACCAAGACAAGAACACGTGCACAAG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp GGACCAGGAGGGGGAAAGCAAGGACCATGGGACAATCAACCTTCTTCATCTGTTGCTAGGGCTGGTGGATaGTATGGCTTGTTGACCTTG +
Preference number: 4 (lower is better)
Translates to: GPGGGKQGPWDNQPSSSVARAGG*YGLLTL
Trigger: CAAGGTCAACAAGCCATATCATCCACCAGCCCTAGC...AACAGATGAAGAAGGTTGATTGTCCCATGGTCCTTGCTTTCCCCCTCCTGGTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000075374.10
CDS-3UTR GCA 90 bp GGAGGGGGAAAGCAAGGACCATGGGACAATCAACCTTCTTCATCTGTTCACTGTAAAGCATCTGGGCTCTaGCGATCCGCAGGGTTTCCA +
Preference number: 4 (lower is better)
Translates to: GGGKQGPWDNQPSSSVHCKASGL*RSAGFP
Trigger: TGGAAACCCTGCGGATCGGCAGAGCCCAGATGCTTT...ACAGTGAACAGATGAAGAAGGTTGATTGTCCCATGGTCCTTGCTTTCCCCCTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp CAGCTCTCTGATCTTCCTGAAGTTGCAGGAGGATTTCCTTCACAAGGTAGGTTTAGCATGGGGCCCTGGTaGTGGGTCACTGCTTCTCCT +
Preference number: 4 (lower is better)
Translates to: QLSDLPEVAGGFPSQGRFSMGPW*WVTASP
Trigger: AGGAGAAGCAGTGACCCAGCACCAGGGCCCCATGCT...AAACCTACCTTGTGAAGGAAATCCTCCTGCAACTTCAGGAAGATCAGAGAGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp CTTACTGCCCCAGCTTTTCTTAACCATTGCTTGGCTTGCTGTAGCCTCTGTCACCACTCAGGCTTGCAGTaGTTGGCTGGGCATCAGCAT +
Preference number: 4 (lower is better)
Translates to: LTAPAFLNHCLACCSLCHHSGLQ*LAGHQH
Trigger: ATGCTGATGCCCAGCCAAGCACTGCAAGCCTGAGTG...GTGACAGAGGCTACAGCAAGCCAAGCAATGGTTAAGAAAAGCTGGGGCAGTAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp AAGGAGCTATCTCCAAGCAAGCATGCCAGGGACCAGGAGGGGGAAAGCAAGGACATAGTCCCTCCTGCTTaGACCTGCTGTTTTCTTCAA +
Preference number: 4 (lower is better)
Translates to: KELSPSKHARDQEGESKDIVPPA*TCCFLQ
Trigger: TTGAAGAAAACAGCAGGTGCAAGCAGGAGGGACTAT...GTCCTTGCTTTCCCCCTCCTGGTCCCTGGCATGCTTGCTTGGAGATAGCTCCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp AAGGAGCTATCTCCAAGCAAGCATGCCAGGGACCAGGAGGGGGAAAGCAAGGACTTGGACCAAAATCTTTaGCTGGAGAGTCTGATCTGC +
Preference number: 4 (lower is better)
Translates to: KELSPSKHARDQEGESKDLDQNL*LESLIC
Trigger: GCAGATCAGACTCTCCAGGCAAAGATTTTGGTCCAA...GTCCTTGCTTTCCCCCTCCTGGTCCCTGGCATGCTTGCTTGGAGATAGCTCCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp CTTGTGCACGTGTTCTTGTCTTGGTCACACAGGAAGCTTCAGATGCTGTGCTGTGGTAAGGATGCGTACTaGCGCTCCATCCCCTCAAAG +
Preference number: 4 (lower is better)
Translates to: LVHVFLSWSHRKLQMLCCGKDAY*RSIPSK
Trigger: CTTTGAGGGGATGGAGCGGCAGTACGCATCCTTACC...ACAGCACAGCATCTGAAGCTTCCTGTGTGACCAAGACAAGAACACGTGCACAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp GGACCAGGAGGGGGAAAGCAAGGACCATGGGACAATCAACCTTCTTCATCTGTTCTGTCTCTCCCTGCTTaGTGCTCCTTAACATGGCCA +
Preference number: 4 (lower is better)
Translates to: GPGGGKQGPWDNQPSSSVLSLPA*CSLTWP
Trigger: TGGCCATGTTAAGGAGCACCAAGCAGGGAGAGACAG...AACAGATGAAGAAGGTTGATTGTCCCATGGTCCTTGCTTTCCCCCTCCTGGTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CTTGTGCACGTGTTCTTGTCTTGGTCACACAGGAAGCTTCAGATGCTGTGCTGTGTGTGTGCTCCCATCTaGACCCTTTCCAGACACCCA +
Preference number: 4 (lower is better)
Translates to: LVHVFLSWSHRKLQMLCCVCAPI*TLSRHP
Trigger: TGGGTGTCTGGAAAGGGTCCAGATGGGAGCACACAC...ACAGCACAGCATCTGAAGCTTCCTGTGTGACCAAGACAAGAACACGTGCACAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp TCCAAGGCTCCGCTTCTCTACAATGCTATTGAATTCATCAGCCTTTTGCTCCATTGTTGCCCTCAGATCTaGGGGGCGGGGATAGCTCCC +
Preference number: 4 (lower is better)
Translates to: SKAPLLYNAIEFISLLLHCCPQI*GAGIAP
Trigger: GGGAGCTATCCCCGCCCCCCAGATCTGAGGGCAACA...ATGGAGCAAAAGGCTGATGAATTCAATAGCATTGTAGAGAAGCGGAGCCTTGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp AGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGGGGCGATCCGCCAGCGACTaGACTTTGCCTTCATCTGGC +
Preference number: 4 (lower is better)
Translates to: SEFSQGCKYTGSYSLLLGRSASD*TLPSSG
Trigger: GCCAGATGAAGGCAAAGTTCAGTCGCTGGCGGATCG...CCCCAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp CTTACTGCCCCAGCTTTTCTTAACCATTGCTTGGCTTGCTGTAGCCTCTGTCACGCAGATCATTCTTCCTaGCTTCAGCCACAGCCGTCT +
Preference number: 4 (lower is better)
Translates to: LTAPAFLNHCLACCSLCHADHSS*LQPQPS
Trigger: AGACGGCTGTGGCTGAAGTCAGGAAGAATGATCTGC...GTGACAGAGGCTACAGCAAGCCAAGCAATGGTTAAGAAAAGCTGGGGCAGTAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp CAGCTCTCTGATCTTCCTGAAGTTGCAGGAGGATTTCCTTCACAAGGTAGGTTTAGCTCGGGGTTTCCCTaGGGGGCAGACTCACAATTC +
Preference number: 4 (lower is better)
Translates to: QLSDLPEVAGGFPSQGRFSSGFP*GADSQF
Trigger: GAATTGTGAGTCTGCCCCTCAGGGAAACCCCGAGCT...AAACCTACCTTGTGAAGGAAATCCTCCTGCAACTTCAGGAAGATCAGAGAGCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp CCTTTCTCTGTTATAGAGCTCCCAGCTACAGAGAGATACCCTAGTGAGTTTTCCAGCTCGGGGTTTCCCTaGGGGGCAGACTCACAATTC +
Preference number: 4 (lower is better)
Translates to: PFSVIELPATERYPSEFSSSGFP*GADSQF
Trigger: GAATTGTGAGTCTGCCCCTCAGGGAAACCCCGAGCT...GGAAAACTCACTAGGGTATCTCTCTGTAGCTGGGAGCTCTATAACAGAGAAAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp CCTTTCTCTGTTATAGAGCTCCCAGCTACAGAGAGATACCCTAGTGAGTTTTCCGGTGAGCTGCTCGCTTaGCTCCAGGGAGAGAGCATA +
Preference number: 4 (lower is better)
Translates to: PFSVIELPATERYPSEFSGELLA*LQGESI
Trigger: TATGCTCTCTCCCTGGAGTCAAGCGAGCAGCTCACC...GGAAAACTCACTAGGGTATCTCTCTGTAGCTGGGAGCTCTATAACAGAGAAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp GGAACGGAACACTTTCTGAAGAGCAGATCAAGAGATGGGCTCAAAGAGTCTGTGAAAGCATCTGGGCTCTaGCGATCCGCAGGGTTTCCA +
Preference number: 4 (lower is better)
Translates to: GTEHFLKSRSRDGLKESVKASGL*RSAGFP
Trigger: TGGAAACCCTGCGGATCGGCAGAGCCCAGATGCTTT...CACAGACTCTTTGAGCCCATCTCTTGATCTGCTCTTCAGAAAGTGTTCCGTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp GGAACGGAACACTTTCTGAAGAGCAGATCAAGAGATGGGCTCAAAGAGTCTGTGCACTCAGGCTTGCAGTaGTTGGCTGGGCATCAGCAT +
Preference number: 4 (lower is better)
Translates to: GTEHFLKSRSRDGLKESVHSGLQ*LAGHQH
Trigger: ATGCTGATGCCCAGCCAAGCACTGCAAGCCTGAGTG...CACAGACTCTTTGAGCCCATCTCTTGATCTGCTCTTCAGAAAGTGTTCCGTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp CATGTACGCGGTTGCTTTGTTCTCAGTGAATATCTGCAGCCTCTCTGCTCTGCCCCTCCTGCTTGCACCTaGTGTTTTCTTCAATGCCTC +
Preference number: 4 (lower is better)
Translates to: HVRGCFVLSEYLQPLCSAPPACT*CFLQCL
Trigger: GAGGCATTGAAGAAAACAGCAGGTGCAAGCAGGAGG...GGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAACCGCGTACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp AATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGTCTCACACCTCAAAGTATGGACTCTTGCTTTGCTaGGGGGAGGCTGGCTCTTCT +
Preference number: 4 (lower is better)
Translates to: NICSLSALPLYRSHTSKYGLLLC*GEAGSS
Trigger: AGAAGAGCCAGCCTCCCCGCAGCAAAGCAAGAGTCC...ATACTTTGAGGTGTGAGACCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp ATTGCATTAAACTTGGACTTTCTGTTCACATGGACCCAGGAAGCACTGGGACGTGGACTCTTGCTTTGCTaGGGGGAGGCTGGCTCTTCT +
Preference number: 4 (lower is better)
Translates to: IALNLDFLFTWTQEALGRGLLLC*GEAGSS
Trigger: AGAAGAGCCAGCCTCCCCGCAGCAAAGCAAGAGTCC...ACGTCCCAGTGCTTCCTGGGTCCATGTGAACAGAAAGTCCAAGTTTAATGCAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp GATTGTGTTGACTGTGTACAACACAAAGCCAAGGTCTGGAGAAGCTTTTCTGTAGAACCCGGGGACTCTTaGTTTGCTGCGGGGAGGCTG +
Preference number: 4 (lower is better)
Translates to: DCVDCVQHKAKVWRSFSVEPGDS*FAAGRL
Trigger: CAGCCTCCCCGCAGCAAAGCAAGAGTCCCCGGGTTC...TACAGAAAAGCTTCTCCAGACCTTGGCTTTGTGTTGTACACAGTCAACACAATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp AGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGGGGCAGACCATCCGCGTCTaGCTCTTCTGGCCCATCGTA +
Preference number: 4 (lower is better)
Translates to: SEFSQGCKYTGSYSLLLGQTIRV*LFWPIV
Trigger: TACGATGGGCCAGAAGAGGCAGACGCGGATGGTCTG...CCCCAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp GGACCAGGAGGGGGAAAGCAAGGACCATGGGACAATCAACCTTCTTCATCTGTTTTAAATGCAGCCAGTTaGGCAGCCACTTCTGTCTCG +
Preference number: 4 (lower is better)
Translates to: GPGGGKQGPWDNQPSSSVLNAAS*AATSVS
Trigger: CGAGACAGAAGTGGCTGCCCAACTGGCTGCATTTAA...AACAGATGAAGAAGGTTGATTGTCCCATGGTCCTTGCTTTCCCCCTCCTGGTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp AATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGTCTCACACCTCAAAGTATATGGGGCCCTGGTGCTaGGTCACTGCTTCTCCTAAC +
Preference number: 4 (lower is better)
Translates to: NICSLSALPLYRSHTSKYMGPWC*VTASPN
Trigger: GTTAGGAGAAGCAGTGACCCAGCACCAGGGCCCCAT...ATACTTTGAGGTGTGAGACCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp TCCAAGGCTCCGCTTCTCTACAATGCTATTGAATTCATCAGCCTTTTGCTCCATCAGGCTTGCAGTGCTTaGCTGGGCATCAGCATGGGG +
Preference number: 4 (lower is better)
Translates to: SKAPLLYNAIEFISLLLHQACSA*LGISMG
Trigger: CCCCATGCTGATGCCCAGCCAAGCACTGCAAGCCTG...ATGGAGCAAAAGGCTGATGAATTCAATAGCATTGTAGAGAAGCGGAGCCTTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CTTACTGCCCCAGCTTTTCTTAACCATTGCTTGGCTTGCTGTAGCCTCTGTCACCTGTCTCTCCCTGCTTaGTGCTCCTTAACATGGCCA +
Preference number: 4 (lower is better)
Translates to: LTAPAFLNHCLACCSLCHLSLPA*CSLTWP
Trigger: TGGCCATGTTAAGGAGCACCAAGCAGGGAGAGACAG...GTGACAGAGGCTACAGCAAGCCAAGCAATGGTTAAGAAAAGCTGGGGCAGTAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp AAGGAGCTATCTCCAAGCAAGCATGCCAGGGACCAGGAGGGGGAAAGCAAGGACTTAACAGCAATCAGTTaGTCATTCATTCGGAGACGG +
Preference number: 4 (lower is better)
Translates to: KELSPSKHARDQEGESKDLTAIS*SFIRRR
Trigger: CCGTCTCCGAATGAATGACCAACTGATTGCTGTTAA...GTCCTTGCTTTCCCCCTCCTGGTCCCTGGCATGCTTGCTTGGAGATAGCTCCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp AAGGAGCTATCTCCAAGCAAGCATGCCAGGGACCAGGAGGGGGAAAGCAAGGACGAAAGTGGTTCACTCTaGCATAATTGGGGTCCATTT +
Preference number: 4 (lower is better)
Translates to: KELSPSKHARDQEGESKDESGSL*HNWGPF
Trigger: AAATGGACCCCAATTATGCCAGAGTGAACCACTTTC...GTCCTTGCTTTCCCCCTCCTGGTCCCTGGCATGCTTGCTTGGAGATAGCTCCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075374.10
CDS-3UTR CCA 90 bp CAGCTCTCTGATCTTCCTGAAGTTGCAGGAGGATTTCCTTCACAAGGTAGGTTTCCGAGGGTAAGCAAGTaGTCCAGCTCGAAGGGGAGA +
Preference number: 4 (lower is better)
Translates to: QLSDLPEVAGGFPSQGRFPRVSK*SSSKGR
Trigger: TCTCCCCTTCGAGCTGGACCACTTGCTTACCCTCGG...AAACCTACCTTGTGAAGGAAATCCTCCTGCAACTTCAGGAAGATCAGAGAGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075374.10
CDS-3UTR CCA 90 bp CAGCTTCTTACGTCAGAATGCTTTTCCTTTAAATCAGGTGGAGACCTTAGCTGTTGTTGCCCTCAGATCTaGGGGGCGGGGATAGCTCCC +
Preference number: 4 (lower is better)
Translates to: QLLTSECFSFKSGGDLSCCCPQI*GAGIAP
Trigger: GGGAGCTATCCCCGCCCCCCAGATCTGAGGGCAACA...ACAGCTAAGGTCTCCACCTGATTTAAAGGAAAAGCATTCTGACGTAAGAAGCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CAA 72 bp TCAGTCGCTGAGAAAGCCAGAATGCCGGGCCGTTTCTaGCTGTTTCTCAGTCTTGTGCACGTGTTCTTGTCT +
Preference number: 4 (lower is better)
Translates to: SVAEKARMPGRF*LFLSLVHVFLS
Trigger: AGACAAGAACACGTGCACAAGACTGAGAAACAGCAAGAAACGGCCCGGCATTCTGGCTTTCTCAGCGACTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp CAGCTCTCTGATCTTCCTGAAGTTGCAGGAGGATTTCCTTCACAAGGTAGGTTTCTTCAATGCCTCGGATaGAGAGTCCTAGGATCCGGC +
Preference number: 4 (lower is better)
Translates to: QLSDLPEVAGGFPSQGRFLQCLG*RVLGSG
Trigger: GCCGGATCCTAGGACTCTTCATCCGAGGCATTGAAG...AAACCTACCTTGTGAAGGAAATCCTCCTGCAACTTCAGGAAGATCAGAGAGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp CCTTTCTCTGTTATAGAGCTCCCAGCTACAGAGAGATACCCTAGTGAGTTTTCCGCGGGCAATGACCAATaGCACTGTCTCTCCCTGCTT +
Preference number: 4 (lower is better)
Translates to: PFSVIELPATERYPSEFSAGNDQ*HCLSLL
Trigger: AAGCAGGGAGAGACAGTGTCATTGGTCATTGCCCGC...GGAAAACTCACTAGGGTATCTCTCTGTAGCTGGGAGCTCTATAACAGAGAAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp GATTGTGTTGACTGTGTACAACACAAAGCCAAGGTCTGGAGAAGCTTTTCTGTAGGGGGATCTCCAAGGTaGGCTGCTCGCTTGACTCCA +
Preference number: 4 (lower is better)
Translates to: DCVDCVQHKAKVWRSFSVGGSPR*AARLTP
Trigger: TGGAGTCAAGCGAGCAGCTCACCTTGGAGATCCCCC...TACAGAAAAGCTTCTCCAGACCTTGGCTTTGTGTTGTACACAGTCAACACAATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp CTTACTGCCCCAGCTTTTCTTAACCATTGCTTGGCTTGCTGTAGCCTCTGTCACCCTCCTGCTTGCACCTaGTGTTTTCTTCAATGCCTC +
Preference number: 4 (lower is better)
Translates to: LTAPAFLNHCLACCSLCHPPACT*CFLQCL
Trigger: GAGGCATTGAAGAAAACAGCAGGTGCAAGCAGGAGG...GTGACAGAGGCTACAGCAAGCCAAGCAATGGTTAAGAAAAGCTGGGGCAGTAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp CATGTACGCGGTTGCTTTGTTCTCAGTGAATATCTGCAGCCTCTCTGCTCTGCCACTGGGAGATTTCATTaGCTGGCGGAAGACATCTTG +
Preference number: 4 (lower is better)
Translates to: HVRGCFVLSEYLQPLCSATGRFH*LAEDIL
Trigger: CAAGATGTCTTCCGCCAGGCAATGAAATCTCCCAGT...GGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAACCGCGTACATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp GTTGCTTTGTTCTCAGTGAATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGTCACCAACTGGATCATaGCCCGGATGTTTCCCTCCA +
Preference number: 4 (lower is better)
Translates to: VALFSVNICSLSALPLYRSPTGS*PGCFPP
Trigger: TGGAGGGAAACATCCGGGGCATGATCCAGTTGGTGA...CCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp CTTGTGCACGTGTTCTTGTCTTGGTCACACAGGAAGCTTCAGATGCTGTGCTGTGTCATGGGATTCTTCTaGCTGGGATCCTGGTTACGA +
Preference number: 4 (lower is better)
Translates to: LVHVFLSWSHRKLQMLCCVMGFF*LGSWLR
Trigger: TCGTAACCAGGATCCCAGGCAGAAGAATCCCATGAC...ACAGCACAGCATCTGAAGCTTCCTGTGTGACCAAGACAAGAACACGTGCACAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CCTAGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGTGTCTCGAAAGCATCTaGGCTCTGCCGATCCGCAGG +
Preference number: 4 (lower is better)
Translates to: PSEFSQGCKYTGSYSLLLCLESI*ALPIRR
Trigger: CCTGCGGATCGGCAGAGCCCAGATGCTTTCGAGACA...CAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACTAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CAGCTTCTTACGTCAGAATGCTTTTCCTTTAAATCAGGTGGAGACCTTAGCTGTCTTGCAGTGCTTGGCTaGGCATCAGCATGGGGCCCT +
Preference number: 4 (lower is better)
Translates to: QLLTSECFSFKSGGDLSCLAVLG*ASAWGP
Trigger: AGGGCCCCATGCTGATGCCCAGCCAAGCACTGCAAG...ACAGCTAAGGTCTCCACCTGATTTAAAGGAAAAGCATTCTGACGTAAGAAGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CAGCTTCTTACGTCAGAATGCTTTTCCTTTAAATCAGGTGGAGACCTTAGCTGTAAGAAGGGCACCACGTaGATCCCCAGGGGGTCTCCT +
Preference number: 4 (lower is better)
Translates to: QLLTSECFSFKSGGDLSCKKGTT*IPRGSP
Trigger: AGGAGACCCCCTGGGGATCCACGTGGTGCCCTTCTT...ACAGCTAAGGTCTCCACCTGATTTAAAGGAAAAGCATTCTGACGTAAGAAGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CATGTACGCGGTTGCTTTGTTCTCAGTGAATATCTGCAGCCTCTCTGCTCTGCCCATGGAGAATCACACTaGGAGATTTCATTGCCTGGC +
Preference number: 4 (lower is better)
Translates to: HVRGCFVLSEYLQPLCSAHGESH*EISLPG
Trigger: GCCAGGCAATGAAATCTCCCAGTGTGATTCTCCATG...GGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAACCGCGTACATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp GATTGTGTTGACTGTGTACAACACAAAGCCAAGGTCTGGAGAAGCTTTTCTGTATTCCAGAGCAGGATGTaGTGGCGGGGACGGTGGTAC +
Preference number: 4 (lower is better)
Translates to: DCVDCVQHKAKVWRSFSVFQSRM*WRGRWY
Trigger: GTACCACCGTCCCCGCCACCACATCCTGCTCTGGAA...TACAGAAAAGCTTCTCCAGACCTTGGCTTTGTGTTGTACACAGTCAACACAATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CTTGTGCACGTGTTCTTGTCTTGGTCACACAGGAAGCTTCAGATGCTGTGCTGTTTCCAAATCTCAGCATaGCACCGAAGCCCTTCCTCT +
Preference number: 4 (lower is better)
Translates to: LVHVFLSWSHRKLQMLCCFQISA*HRSPSS
Trigger: AGAGGAAGGGCTTCGGTGCCATGCTGAGATTTGGAA...ACAGCACAGCATCTGAAGCTTCCTGTGTGACCAAGACAAGAACACGTGCACAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp GATTGTGTTGACTGTGTACAACACAAAGCCAAGGTCTGGAGAAGCTTTTCTGTAGTGCTGATGGGCTGGTaGGGGTGGGTAGTACTGTGG +
Preference number: 4 (lower is better)
Translates to: DCVDCVQHKAKVWRSFSVVLMGW*GWVVLW
Trigger: CCACAGTACTACCCACCCCCACCAGCCCATCAGCAC...TACAGAAAAGCTTCTCCAGACCTTGGCTTTGTGTTGTACACAGTCAACACAATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CTTACTGCCCCAGCTTTTCTTAACCATTGCTTGGCTTGCTGTAGCCTCTGTCACTGGGATTCTTCTGCCTaGGATCCTGGTTACGATAGG +
Preference number: 4 (lower is better)
Translates to: LTAPAFLNHCLACCSLCHWDSSA*DPGYDR
Trigger: CCTATCGTAACCAGGATCCCAGGCAGAAGAATCCCA...GTGACAGAGGCTACAGCAAGCCAAGCAATGGTTAAGAAAAGCTGGGGCAGTAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CTTACTGCCCCAGCTTTTCTTAACCATTGCTTGGCTTGCTGTAGCCTCTGTCACATACCGCTGCAGTCATaGGATTCTTCTGCCTGGGAT +
Preference number: 4 (lower is better)
Translates to: LTAPAFLNHCLACCSLCHIPLQS*DSSAWD
Trigger: ATCCCAGGCAGAAGAATCCCATGACTGCAGCGGTAT...GTGACAGAGGCTACAGCAAGCCAAGCAATGGTTAAGAAAAGCTGGGGCAGTAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CAA 72 bp TTTTATCTTCTCTTCTCCATGCTGGTAATCACATGCTaGTGCGTGCGCACGAGTGCACTCATGCGTGCACAC +
Preference number: 4 (lower is better)
Translates to: FYLLFSMLVITC*CVRTSALMRAH
Trigger: GTGTGCACGCATGAGTGCACTCGTGCGCACGCACAAGCATGTGATTACCAGCATGGAGAAGAGAAGATAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CAA 72 bp GGAAGCACTGGGACGTCTACCCAATTTAACGCCAGTTaGAAAGCTGCTCACAGTGGATCTCAGTGTTCAGTG +
Preference number: 4 (lower is better)
Translates to: GSTGTSTQFNAS*KAAHSGSQCSV
Trigger: CACTGAACACTGAGATCCACTGTGAGCAGCTTTCAAACTGGCGTTAAATTGGGTAGACGTCCCAGTGCTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp GGACCAGGAGGGGGAAAGCAAGGACCATGGGACAATCAACCTTCTTCATCTGTTTATTGTTCACGGTTTTaGGGCAGAAGCACATGGAGA +
Preference number: 4 (lower is better)
Translates to: GPGGGKQGPWDNQPSSSVYCSRF*GRSTWR
Trigger: TCTCCATGTGCTTCTGCCTCAAAACCGTGAACAATA...AACAGATGAAGAAGGTTGATTGTCCCATGGTCCTTGCTTTCCCCCTCCTGGTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp GTTGCTTTGTTCTCAGTGAATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGAAGTGCTCCACATTCTaGAAGCTCCTCCAGTGGTCT +
Preference number: 4 (lower is better)
Translates to: VALFSVNICSLSALPLYRKCSTF*KLLQWS
Trigger: AGACCACTGGAGGAGCTTTCAGAATGTGGAGCACTT...CCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp GTTGCTTTGTTCTCAGTGAATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGGTGCTCAGAGCTTCTTaGCAGTTCTCAAAGCCTGGT +
Preference number: 4 (lower is better)
Translates to: VALFSVNICSLSALPLYRVLRAS*QFSKPG
Trigger: ACCAGGCTTTGAGAACTGTCAAGAAGCTCTGAGCAC...CCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp CAGCTCTCTGATCTTCCTGAAGTTGCAGGAGGATTTCCTTCACAAGGTAGGTTTTCCACTCCAGAGCTGTaGCTGAAATCTTCAAGGCCC +
Preference number: 4 (lower is better)
Translates to: QLSDLPEVAGGFPSQGRFSTPEL*LKSSRP
Trigger: GGGCCTTGAAGATTTCAGTCACAGCTCTGGAGTGGA...AAACCTACCTTGTGAAGGAAATCCTCCTGCAACTTCAGGAAGATCAGAGAGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp CCTTTCTCTGTTATAGAGCTCCCAGCTACAGAGAGATACCCTAGTGAGTTTTCCCGATTTGTCGATGGCTaGTCGGAAGCTCTCGTTGCA +
Preference number: 4 (lower is better)
Translates to: PFSVIELPATERYPSEFSRFVDG*SEALVA
Trigger: TGCAACGAGAGCTTCCGAGCAGCCATCGACAAATCG...GGAAAACTCACTAGGGTATCTCTCTGTAGCTGGGAGCTCTATAACAGAGAAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp CCTAGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGGGTAAGGATGCGTACTaGCGCTCCATCCCCTCAAAG +
Preference number: 4 (lower is better)
Translates to: PSEFSQGCKYTGSYSLLLGKDAY*RSIPSK
Trigger: CTTTGAGGGGATGGAGCGGCAGTACGCATCCTTACC...CAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACTAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CATGTACGCGGTTGCTTTGTTCTCAGTGAATATCTGCAGCCTCTCTGCTCTGCCTTTCCACGTTCTGGGTaGAATCCAGAACAACAGGTT +
Preference number: 4 (lower is better)
Translates to: HVRGCFVLSEYLQPLCSAFPRSG*NPEQQV
Trigger: AACCTGTTGTTCTGGATTCCACCCAGAACGTGGAAA...GGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAACCGCGTACATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp ACAGATGACTTGGTAATCATAAAAGAACAGGAAAGACGAGAGAAAGCGAGGGTATTGCTGCGGGGAGGCTaGCTCTTCTCCTTCAGGGCT +
Preference number: 4 (lower is better)
Translates to: TDDLVIIKEQERREKARVLLRGG*LFSFRA
Trigger: AGCCCTGAAGGAGAAGAGCCAGCCTCCCCGCAGCAA...TACCCTCGCTTTCTCTCGTCTTTCCTGTTCTTTTATGATTACCAAGTCATCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp GGAGGGGGAAAGCAAGGACCATGGGACAATCAACCTTCTTCATCTGTTCACTGTCCATGGCTTCGTGGTTaGACTTTCCCAGAAGAGTTT +
Preference number: 4 (lower is better)
Translates to: GGGKQGPWDNQPSSSVHCPWLRG*TFPEEF
Trigger: AAACTCTTCTGGGAAAGTCCAACCACGAAGCCATGG...ACAGTGAACAGATGAAGAAGGTTGATTGTCCCATGGTCCTTGCTTTCCCCCTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp GGAGGGGGAAAGCAAGGACCATGGGACAATCAACCTTCTTCATCTGTTCACTGTACAGTTCTCAAAGCCTaGTCTGGAAAGTGCTCCACA +
Preference number: 4 (lower is better)
Translates to: GGGKQGPWDNQPSSSVHCTVLKA*SGKCST
Trigger: TGTGGAGCACTTTCCAGACCAGGCTTTGAGAACTGT...ACAGTGAACAGATGAAGAAGGTTGATTGTCCCATGGTCCTTGCTTTCCCCCTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CCTTTCTCTGTTATAGAGCTCCCAGCTACAGAGAGATACCCTAGTGAGTTTTCCCAGCCCACCCATCACTaGGAAGCAATAGGTCTTTCC +
Preference number: 4 (lower is better)
Translates to: PFSVIELPATERYPSEFSQPTHH*EAIGLS
Trigger: GGAAAGACCTATTGCTTCCCAGTGATGGGTGGGCTG...GGAAAACTCACTAGGGTATCTCTCTGTAGCTGGGAGCTCTATAACAGAGAAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp GGACCAGGAGGGGGAAAGCAAGGACCATGGGACAATCAACCTTCTTCATCTGTTCTGGAAAATATCCTGTaGAATCCACTCCAGAGCTGT +
Preference number: 4 (lower is better)
Translates to: GPGGGKQGPWDNQPSSSVLENIL*NPLQSC
Trigger: ACAGCTCTGGAGTGGATTCCACAGGATATTTTCCAG...AACAGATGAAGAAGGTTGATTGTCCCATGGTCCTTGCTTTCCCCCTCCTGGTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp AGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGGGGTTCGGGCTGCCTGACTaGTGTCACCGTTCTGAAGTT +
Preference number: 4 (lower is better)
Translates to: SEFSQGCKYTGSYSLLLGFGLPD*CHRSEV
Trigger: AACTTCAGAACGGTGACACCAGTCAGGCAGCCCGAA...CCCCAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CCTTTCTCTGTTATAGAGCTCCCAGCTACAGAGAGATACCCTAGTGAGTTTTCCTTCGGGCTGCCTGACTaGTGTCACCGTTCTGAAGTT +
Preference number: 4 (lower is better)
Translates to: PFSVIELPATERYPSEFSFGLPD*CHRSEV
Trigger: AACTTCAGAACGGTGACACCAGTCAGGCAGCCCGAA...GGAAAACTCACTAGGGTATCTCTCTGTAGCTGGGAGCTCTATAACAGAGAAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp ACAGATGACTTGGTAATCATAAAAGAACAGGAAAGACGAGAGAAAGCGAGGGTACTGCTGAGCCTCCCCTaGGTAAGGATGCGTACTGCC +
Preference number: 4 (lower is better)
Translates to: TDDLVIIKEQERREKARVLLSLP*VRMRTA
Trigger: GGCAGTACGCATCCTTACCCAGGGGAGGCTCAGCAG...TACCCTCGCTTTCTCTCGTCTTTCCTGTTCTTTTATGATTACCAAGTCATCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp GATTGTGTTGACTGTGTACAACACAAAGCCAAGGTCTGGAGAAGCTTTTCTGTAATGGGCTGGTGGGGGTaGGTAGTACTGTGGGTATCG +
Preference number: 4 (lower is better)
Translates to: DCVDCVQHKAKVWRSFSVMGWWG*VVLWVS
Trigger: CGATACCCACAGTACTACCCACCCCCACCAGCCCAT...TACAGAAAAGCTTCTCCAGACCTTGGCTTTGTGTTGTACACAGTCAACACAATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CCTAGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGTTTGTGCTGATGGGCTaGTGGGGGTGGGTAGTACTG +
Preference number: 4 (lower is better)
Translates to: PSEFSQGCKYTGSYSLLLFVLMG*WGWVVL
Trigger: CAGTACTACCCACCCCCACCAGCCCATCAGCACAAA...CAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACTAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CAA 72 bp GTTTCCAAGAGGTCACTAGTCATGTACGCGGTTGCTTaGTTCTCAGTGAATATCTGCAGCCTCTCTGCTCTG +
Preference number: 4 (lower is better)
Translates to: VSKRSLVMYAVA*FSVNICSLSAL
Trigger: CAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAACCGCGTACATGACTAGTGACCTCTTGGAAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CAA 72 bp ACAAAGCCTCCAAGGCTCCGCTTCTCTACAATGCTATaGAATTCATCAGCCTTTTGCTCCATGTGGCCCTGT +
Preference number: 4 (lower is better)
Translates to: TKPPRLRFSTML*NSSAFCSMWPC
Trigger: ACAGGGCCACATGGAGCAAAAGGCTGATGAATTCAATAGCATTGTAGAGAAGCGGAGCCTTGGAGGCTTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp AAGCAAGAGCCACTCTGTACCACGGAACACCTTAGCCCAGAGAAGGCCTTAGGTGAGTGGTCCAATGACTaGTTTTTCATATTGTTCACG +
Preference number: 4 (lower is better)
Translates to: KQEPLCTTEHLSPEKALGEWSND*FFILFT
Trigger: CGTGAACAATATGAAAAATCAGTCATTGGACCACTC...ACCTAAGGCCTTCTCTGGGCTAAGGTGTTCCGTGGTACAGAGTGGCTCTTGCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp AAGCAAGAGCCACTCTGTACCACGGAACACCTTAGCCCAGAGAAGGCCTTAGGTCTGAAGTTGACATGTTaGTCTGGAAAATATCCTGTG +
Preference number: 4 (lower is better)
Translates to: KQEPLCTTEHLSPEKALGLKLTC*SGKYPV
Trigger: CACAGGATATTTTCCAGATCAACATGTCAACTTCAG...ACCTAAGGCCTTCTCTGGGCTAAGGTGTTCCGTGGTACAGAGTGGCTCTTGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp CCTAGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGGCAGATCATTCTTCCTaGCTTCAGCCACAGCCGTCT +
Preference number: 4 (lower is better)
Translates to: PSEFSQGCKYTGSYSLLLADHSS*LQPQPS
Trigger: AGACGGCTGTGGCTGAAGTCAGGAAGAATGATCTGC...CAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp AGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGGGGGAGGAACATCTTGTCTaGAGGGCCCTTTGTGCTGAT +
Preference number: 4 (lower is better)
Translates to: SEFSQGCKYTGSYSLLLGEEHLV*RALCAD
Trigger: ATCAGCACAAAGGGCCCTTCAGACAAGATGTTCCTC...CCCCAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp CCTAGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGTCTCTCCCTGCTTGGTaGTCCTTAACATGGCCACGA +
Preference number: 4 (lower is better)
Translates to: PSEFSQGCKYTGSYSLLLSLPAW*SLTWPR
Trigger: TCGTGGCCATGTTAAGGAGCACCAAGCAGGGAGAGA...CAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp TCCAAGGCTCCGCTTCTCTACAATGCTATTGAATTCATCAGCCTTTTGCTCCATTCACCAACTGGATCATaGCCCGGATGTTTCCCTCCA +
Preference number: 4 (lower is better)
Translates to: SKAPLLYNAIEFISLLLHSPTGS*PGCFPP
Trigger: TGGAGGGAAACATCCGGGGCATGATCCAGTTGGTGA...ATGGAGCAAAAGGCTGATGAATTCAATAGCATTGTAGAGAAGCGGAGCCTTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp ATTGCATTAAACTTGGACTTTCTGTTCACATGGACCCAGGAAGCACTGGGACGTCATTTCGCCTGGAGGTaGTCAGAGCTTCTTGACAGT +
Preference number: 4 (lower is better)
Translates to: IALNLDFLFTWTQEALGRHFAWR*SELLDS
Trigger: ACTGTCAAGAAGCTCTGAGCACCTCCAGGCGAAATG...ACGTCCCAGTGCTTCCTGGGTCCATGTGAACAGAAAGTCCAAGTTTAATGCAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp CCTTTCTCTGTTATAGAGCTCCCAGCTACAGAGAGATACCCTAGTGAGTTTTCCCCAGCGACTGAACTTTaGCTTCATCTGGCACAAGGT +
Preference number: 4 (lower is better)
Translates to: PFSVIELPATERYPSEFSPATEL*LHLAQG
Trigger: ACCTTGTGCCAGATGAAGGCAAAGTTCAGTCGCTGG...GGAAAACTCACTAGGGTATCTCTCTGTAGCTGGGAGCTCTATAACAGAGAAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp GGAACGGAACACTTTCTGAAGAGCAGATCAAGAGATGGGCTCAAAGAGTCTGTGATCAACAAGGCCTCTTaGCTGCTTTTCTCTCAGCTC +
Preference number: 4 (lower is better)
Translates to: GTEHFLKSRSRDGLKESVINKAS*LLFSQL
Trigger: GAGCTGAGAGAAAAGCAGGCAAGAGGCCTTGTTGAT...CACAGACTCTTTGAGCCCATCTCTTGATCTGCTCTTCAGAAAGTGTTCCGTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075374.10
CDS-3UTR GCA 90 bp CAGCTCTCTGATCTTCCTGAAGTTGCAGGAGGATTTCCTTCACAAGGTAGGTTTGTCATGGGATTCTTCTaGCTGGGATCCTGGTTACGA +
Preference number: 4 (lower is better)
Translates to: QLSDLPEVAGGFPSQGRFVMGFF*LGSWLR
Trigger: TCGTAACCAGGATCCCAGGCAGAAGAATCCCATGAC...AAACCTACCTTGTGAAGGAAATCCTCCTGCAACTTCAGGAAGATCAGAGAGCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp AATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGTCTCACACCTCAAAGTATGGGCTCTCAGTCTTTTaGAGTGGCTCTTGTTCGTCA +
Preference number: 4 (lower is better)
Translates to: NICSLSALPLYRSHTSKYGLSVF*SGSCSS
Trigger: TGACGAACAAGAGCCACTCCAAAAGACTGAGAGCCC...ATACTTTGAGGTGTGAGACCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp TCCAAGGCTCCGCTTCTCTACAATGCTATTGAATTCATCAGCCTTTTGCTCCATGGAGATTTCATTGCCTaGCGGAAGACATCTTGGGCC +
Preference number: 4 (lower is better)
Translates to: SKAPLLYNAIEFISLLLHGDFIA*RKTSWA
Trigger: GGCCCAAGATGTCTTCCGCCAGGCAATGAAATCTCC...ATGGAGCAAAAGGCTGATGAATTCAATAGCATTGTAGAGAAGCGGAGCCTTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp GGAGGGGGAAAGCAAGGACCATGGGACAATCAACCTTCTTCATCTGTTCACTGTGCCACGAGTTCTTCTTaGGTTCTTCCTGTAACATCT +
Preference number: 4 (lower is better)
Translates to: GGGKQGPWDNQPSSSVHCATSSS*VLPVTS
Trigger: AGATGTTACAGGAAGAACCCAAGAAGAACTCGTGGC...ACAGTGAACAGATGAAGAAGGTTGATTGTCCCATGGTCCTTGCTTTCCCCCTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp GGAACGGAACACTTTCTGAAGAGCAGATCAAGAGATGGGCTCAAAGAGTCTGTGGTTTCCATGGCTTCGTaGTTGGACTTTCCCAGAAGA +
Preference number: 4 (lower is better)
Translates to: GTEHFLKSRSRDGLKESVVSMAS*LDFPRR
Trigger: TCTTCTGGGAAAGTCCAACCACGAAGCCATGGAAAC...CACAGACTCTTTGAGCCCATCTCTTGATCTGCTCTTCAGAAAGTGTTCCGTTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CTTACTGCCCCAGCTTTTCTTAACCATTGCTTGGCTTGCTGTAGCCTCTGTCACAACTTTGCCTTCATCTaGCACAAGGTCCATGCTCTT +
Preference number: 4 (lower is better)
Translates to: LTAPAFLNHCLACCSLCHNFAFI*HKVHAL
Trigger: AAGAGCATGGACCTTGTGCCAGATGAAGGCAAAGTT...GTGACAGAGGCTACAGCAAGCCAAGCAATGGTTAAGAAAAGCTGGGGCAGTAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp AGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGGGGTTCCAAATCTCAGCATaGCACCGAAGCCCTTCCTCT +
Preference number: 4 (lower is better)
Translates to: SEFSQGCKYTGSYSLLLGFQISA*HRSPSS
Trigger: AGAGGAAGGGCTTCGGTGCCATGCTGAGATTTGGAA...CCCCAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp GGAGGGGGAAAGCAAGGACCATGGGACAATCAACCTTCTTCATCTGTTCACTGTTCACTCTGGCATAATTaGGGTCCATTTCGTCATCGT +
Preference number: 4 (lower is better)
Translates to: GGGKQGPWDNQPSSSVHCSLWHN*GPFRHR
Trigger: ACGATGACGAAATGGACCCCAATTATGCCAGAGTGA...ACAGTGAACAGATGAAGAAGGTTGATTGTCCCATGGTCCTTGCTTTCCCCCTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000075374.10
CDS-3UTR CCA 90 bp CAGCTTCTTACGTCAGAATGCTTTTCCTTTAAATCAGGTGGAGACCTTAGCTGTGTGTGTGCTCCCATCTaGACCCTTTCCAGACACCCA +
Preference number: 4 (lower is better)
Translates to: QLLTSECFSFKSGGDLSCVCAPI*TLSRHP
Trigger: TGGGTGTCTGGAAAGGGTCCAGATGGGAGCACACAC...ACAGCTAAGGTCTCCACCTGATTTAAAGGAAAAGCATTCTGACGTAAGAAGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CAGCTTCTTACGTCAGAATGCTTTTCCTTTAAATCAGGTGGAGACCTTAGCTGTTTTGTGCTGATGGGCTaGTGGGGGTGGGTAGTACTG +
Preference number: 4 (lower is better)
Translates to: QLLTSECFSFKSGGDLSCFVLMG*WGWVVL
Trigger: CAGTACTACCCACCCCCACCAGCCCATCAGCACAAA...ACAGCTAAGGTCTCCACCTGATTTAAAGGAAAAGCATTCTGACGTAAGAAGCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp AATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGTCTCACACCTCAAAGTATTGGGATTCTTCTGCCTaGGATCCTGGTTACGATAGG +
Preference number: 4 (lower is better)
Translates to: NICSLSALPLYRSHTSKYWDSSA*DPGYDR
Trigger: CCTATCGTAACCAGGATCCCAGGCAGAAGAATCCCA...ATACTTTGAGGTGTGAGACCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp AATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGTCTCACACCTCAAAGTATATACCGCTGCAGTCATaGGATTCTTCTGCCTGGGAT +
Preference number: 4 (lower is better)
Translates to: NICSLSALPLYRSHTSKYIPLQS*DSSAWD
Trigger: ATCCCAGGCAGAAGAATCCCATGACTGCAGCGGTAT...ATACTTTGAGGTGTGAGACCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp CATGTACGCGGTTGCTTTGTTCTCAGTGAATATCTGCAGCCTCTCTGCTCTGCCGAGTGGTCCAATGACTaGTTTTTCATATTGTTCACG +
Preference number: 4 (lower is better)
Translates to: HVRGCFVLSEYLQPLCSAEWSND*FFILFT
Trigger: CGTGAACAATATGAAAAATCAGTCATTGGACCACTC...GGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAACCGCGTACATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp TCCAAGGCTCCGCTTCTCTACAATGCTATTGAATTCATCAGCCTTTTGCTCCATGTGCTCAGAGCTTCTTaGCAGTTCTCAAAGCCTGGT +
Preference number: 4 (lower is better)
Translates to: SKAPLLYNAIEFISLLLHVLRAS*QFSKPG
Trigger: ACCAGGCTTTGAGAACTGTCAAGAAGCTCTGAGCAC...ATGGAGCAAAAGGCTGATGAATTCAATAGCATTGTAGAGAAGCGGAGCCTTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp CAGCTTCTTACGTCAGAATGCTTTTCCTTTAAATCAGGTGGAGACCTTAGCTGTTCCACTCCAGAGCTGTaGCTGAAATCTTCAAGGCCC +
Preference number: 4 (lower is better)
Translates to: QLLTSECFSFKSGGDLSCSTPEL*LKSSRP
Trigger: GGGCCTTGAAGATTTCAGTCACAGCTCTGGAGTGGA...ACAGCTAAGGTCTCCACCTGATTTAAAGGAAAAGCATTCTGACGTAAGAAGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp CTTGTGCACGTGTTCTTGTCTTGGTCACACAGGAAGCTTCAGATGCTGTGCTGTTCTAAAGACATTTGCTaGTGCACATGGTTCCCGAAA +
Preference number: 4 (lower is better)
Translates to: LVHVFLSWSHRKLQMLCCSKDIC*CTWFPK
Trigger: TTTCGGGAACCATGTGCATCAGCAAATGTCTTTAGA...ACAGCACAGCATCTGAAGCTTCCTGTGTGACCAAGACAAGAACACGTGCACAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075374.10
CDS-3UTR GCA 90 bp AGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGGGGACTGGGAGATTTCATTaGCTGGCGGAAGACATCTTG +
Preference number: 4 (lower is better)
Translates to: SEFSQGCKYTGSYSLLLGTGRFH*LAEDIL
Trigger: CAAGATGTCTTCCGCCAGGCAATGAAATCTCCCAGT...CCCCAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp GATTGTGTTGACTGTGTACAACACAAAGCCAAGGTCTGGAGAAGCTTTTCTGTATCTCTCCCTGCTTGGTaGTCCTTAACATGGCCACGA +
Preference number: 4 (lower is better)
Translates to: DCVDCVQHKAKVWRSFSVSLPAW*SLTWPR
Trigger: TCGTGGCCATGTTAAGGAGCACCAAGCAGGGAGAGA...TACAGAAAAGCTTCTCCAGACCTTGGCTTTGTGTTGTACACAGTCAACACAATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp CAGCTCTCTGATCTTCCTGAAGTTGCAGGAGGATTTCCTTCACAAGGTAGGTTTCAGCTCCTGATGTTTTaGTCCAATCCTCTCTCTCTC +
Preference number: 4 (lower is better)
Translates to: QLSDLPEVAGGFPSQGRFQLLMF*SNPLSL
Trigger: GAGAGAGAGAGGATTGGAGCAAAACATCAGGAGCTG...AAACCTACCTTGTGAAGGAAATCCTCCTGCAACTTCAGGAAGATCAGAGAGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075374.10
CDS-3UTR CCA 90 bp CAGCTTCTTACGTCAGAATGCTTTTCCTTTAAATCAGGTGGAGACCTTAGCTGTGGAGATTTCATTGCCTaGCGGAAGACATCTTGGGCC +
Preference number: 4 (lower is better)
Translates to: QLLTSECFSFKSGGDLSCGDFIA*RKTSWA
Trigger: GGCCCAAGATGTCTTCCGCCAGGCAATGAAATCTCC...ACAGCTAAGGTCTCCACCTGATTTAAAGGAAAAGCATTCTGACGTAAGAAGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CCTTTCTCTGTTATAGAGCTCCCAGCTACAGAGAGATACCCTAGTGAGTTTTCCCATGGAGAATCACACTaGGAGATTTCATTGCCTGGC +
Preference number: 4 (lower is better)
Translates to: PFSVIELPATERYPSEFSHGESH*EISLPG
Trigger: GCCAGGCAATGAAATCTCCCAGTGTGATTCTCCATG...GGAAAACTCACTAGGGTATCTCTCTGTAGCTGGGAGCTCTATAACAGAGAAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CCTTTCTCTGTTATAGAGCTCCCAGCTACAGAGAGATACCCTAGTGAGTTTTCCCCATGGCTTCGTGGTTaGACTTTCCCAGAAGAGTTT +
Preference number: 4 (lower is better)
Translates to: PFSVIELPATERYPSEFSPWLRG*TFPEEF
Trigger: AAACTCTTCTGGGAAAGTCCAACCACGAAGCCATGG...GGAAAACTCACTAGGGTATCTCTCTGTAGCTGGGAGCTCTATAACAGAGAAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CAGCTTCTTACGTCAGAATGCTTTTCCTTTAAATCAGGTGGAGACCTTAGCTGTCAGCCCACCCATCACTaGGAAGCAATAGGTCTTTCC +
Preference number: 4 (lower is better)
Translates to: QLLTSECFSFKSGGDLSCQPTHH*EAIGLS
Trigger: GGAAAGACCTATTGCTTCCCAGTGATGGGTGGGCTG...ACAGCTAAGGTCTCCACCTGATTTAAAGGAAAAGCATTCTGACGTAAGAAGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CTTGTGCACGTGTTCTTGTCTTGGTCACACAGGAAGCTTCAGATGCTGTGCTGTTTTCAGACCCAAAGTTaGACCAAAATCTTTGCCTGG +
Preference number: 4 (lower is better)
Translates to: LVHVFLSWSHRKLQMLCCFQTQS*TKIFAW
Trigger: CCAGGCAAAGATTTTGGTCCAACTTTGGGTCTGAAA...ACAGCACAGCATCTGAAGCTTCCTGTGTGACCAAGACAAGAACACGTGCACAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CCTAGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGCAATTCAGAGCTGTGTaGCCTGAGCGAGAGCTCTTA +
Preference number: 4 (lower is better)
Translates to: PSEFSQGCKYTGSYSLLLQFRAV*PERELL
Trigger: TAAGAGCTCTCGCTCAGGCCACACAGCTCTGAATTG...CAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACTAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CAA 72 bp CTTGCTGTTTCTCAGTCTTGTGCACGTGTTCTTGTCTaGGTCACACAGGAAGCTTCAGATGCTGTGCTGTAT +
Preference number: 4 (lower is better)
Translates to: LAVSQSCARVLV*VTQEASDAVLY
Trigger: ATACAGCACAGCATCTGAAGCTTCCTGTGTGACCAAGACAAGAACACGTGCACAAGACTGAGAAACAGCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp CAGCTTCTTACGTCAGAATGCTTTTCCTTTAAATCAGGTGGAGACCTTAGCTGTAAGTGCTCCACATTCTaGAAGCTCCTCCAGTGGTCT +
Preference number: 4 (lower is better)
Translates to: QLLTSECFSFKSGGDLSCKCSTF*KLLQWS
Trigger: AGACCACTGGAGGAGCTTTCAGAATGTGGAGCACTT...ACAGCTAAGGTCTCCACCTGATTTAAAGGAAAAGCATTCTGACGTAAGAAGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp ATTGCATTAAACTTGGACTTTCTGTTCACATGGACCCAGGAAGCACTGGGACGTATAGTCCCTCCTGCTTaGACCTGCTGTTTTCTTCAA +
Preference number: 4 (lower is better)
Translates to: IALNLDFLFTWTQEALGRIVPPA*TCCFLQ
Trigger: TTGAAGAAAACAGCAGGTGCAAGCAGGAGGGACTAT...ACGTCCCAGTGCTTCCTGGGTCCATGTGAACAGAAAGTCCAAGTTTAATGCAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp TCCAAGGCTCCGCTTCTCTACAATGCTATTGAATTCATCAGCCTTTTGCTCCATCTTCTCCTTCAGGGCTaGTCGCTCTTGTTAGATGTA +
Preference number: 4 (lower is better)
Translates to: SKAPLLYNAIEFISLLLHLLLQG*SLLLDV
Trigger: TACATCTAACAAGAGCGAGCAGCCCTGAAGGAGAAG...ATGGAGCAAAAGGCTGATGAATTCAATAGCATTGTAGAGAAGCGGAGCCTTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp GATTGTGTTGACTGTGTACAACACAAAGCCAAGGTCTGGAGAAGCTTTTCTGTATTAAATGCAGCCAGTTaGGCAGCCACTTCTGTCTCG +
Preference number: 4 (lower is better)
Translates to: DCVDCVQHKAKVWRSFSVLNAAS*AATSVS
Trigger: CGAGACAGAAGTGGCTGCCCAACTGGCTGCATTTAA...TACAGAAAAGCTTCTCCAGACCTTGGCTTTGTGTTGTACACAGTCAACACAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp ATTGCATTAAACTTGGACTTTCTGTTCACATGGACCCAGGAAGCACTGGGACGTTTTCCACGTTCTGGGTaGAATCCAGAACAACAGGTT +
Preference number: 4 (lower is better)
Translates to: IALNLDFLFTWTQEALGRFPRSG*NPEQQV
Trigger: AACCTGTTGTTCTGGATTCCACCCAGAACGTGGAAA...ACGTCCCAGTGCTTCCTGGGTCCATGTGAACAGAAAGTCCAAGTTTAATGCAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp GGAACGGAACACTTTCTGAAGAGCAGATCAAGAGATGGGCTCAAAGAGTCTGTGTTGTTTTCCACGTTCTaGGTGGAATCCAGAACAACA +
Preference number: 4 (lower is better)
Translates to: GTEHFLKSRSRDGLKESVLFSTF*VESRTT
Trigger: TGTTGTTCTGGATTCCACCCAGAACGTGGAAAACAA...CACAGACTCTTTGAGCCCATCTCTTGATCTGCTCTTCAGAAAGTGTTCCGTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CAGCTCTCTGATCTTCCTGAAGTTGCAGGAGGATTTCCTTCACAAGGTAGGTTTGCCACGAGTTCTTCTTaGGTTCTTCCTGTAACATCT +
Preference number: 4 (lower is better)
Translates to: QLSDLPEVAGGFPSQGRFATSSS*VLPVTS
Trigger: AGATGTTACAGGAAGAACCCAAGAAGAACTCGTGGC...AAACCTACCTTGTGAAGGAAATCCTCCTGCAACTTCAGGAAGATCAGAGAGCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CAGCTCTCTGATCTTCCTGAAGTTGCAGGAGGATTTCCTTCACAAGGTAGGTTTTACTATCATTTCGCCTaGAGGTGCTCAGAGCTTCTT +
Preference number: 4 (lower is better)
Translates to: QLSDLPEVAGGFPSQGRFYYHFA*RCSELL
Trigger: AAGAAGCTCTGAGCACCTCCAGGCGAAATGATAGTA...AAACCTACCTTGTGAAGGAAATCCTCCTGCAACTTCAGGAAGATCAGAGAGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CTTGTGCACGTGTTCTTGTCTTGGTCACACAGGAAGCTTCAGATGCTGTGCTGTTTTCCTTTTATCTTGTaGACTATAGGTGCCAAACGG +
Preference number: 4 (lower is better)
Translates to: LVHVFLSWSHRKLQMLCCFPFIL*TIGAKR
Trigger: CCGTTTGGCACCTATAGTCCACAAGATAAAAGGAAA...ACAGCACAGCATCTGAAGCTTCCTGTGTGACCAAGACAAGAACACGTGCACAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CAGCTCTCTGATCTTCCTGAAGTTGCAGGAGGATTTCCTTCACAAGGTAGGTTTAACTTTGCCTTCATCTaGCACAAGGTCCATGCTCTT +
Preference number: 4 (lower is better)
Translates to: QLSDLPEVAGGFPSQGRFNFAFI*HKVHAL
Trigger: AAGAGCATGGACCTTGTGCCAGATGAAGGCAAAGTT...AAACCTACCTTGTGAAGGAAATCCTCCTGCAACTTCAGGAAGATCAGAGAGCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp ACAGATGACTTGGTAATCATAAAAGAACAGGAAAGACGAGAGAAAGCGAGGGTACGTACGATTTGTCGATaGCTGCTCGGAAGCTCTCGT +
Preference number: 4 (lower is better)
Translates to: TDDLVIIKEQERREKARVRTICR*LLGSSR
Trigger: ACGAGAGCTTCCGAGCAGCCATCGACAAATCGTACG...TACCCTCGCTTTCTCTCGTCTTTCCTGTTCTTTTATGATTACCAAGTCATCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp GATTGTGTTGACTGTGTACAACACAAAGCCAAGGTCTGGAGAAGCTTTTCTGTACAATTCAGAGCTGTGTaGCCTGAGCGAGAGCTCTTA +
Preference number: 4 (lower is better)
Translates to: DCVDCVQHKAKVWRSFSVQFRAV*PERELL
Trigger: TAAGAGCTCTCGCTCAGGCCACACAGCTCTGAATTG...TACAGAAAAGCTTCTCCAGACCTTGGCTTTGTGTTGTACACAGTCAACACAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CAGCTCTCTGATCTTCCTGAAGTTGCAGGAGGATTTCCTTCACAAGGTAGGTTTAGCTCGAAGGGGAGATaGAGATCTAAAGACATTTGC +
Preference number: 4 (lower is better)
Translates to: QLSDLPEVAGGFPSQGRFSSKGR*RSKDIC
Trigger: GCAAATGTCTTTAGATCTCCATCTCCCCTTCGAGCT...AAACCTACCTTGTGAAGGAAATCCTCCTGCAACTTCAGGAAGATCAGAGAGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075374.10
3UTR CAA 72 bp GGGAACAGAGAAATCAGCTCTCTGATCTTCCTGAAGTaGCAGGAGGATTTCCTTCACAAGGTAGGTTTAGCT +
Preference number: 4 (lower is better)
Translates to: GNREISSLIFLK*QEDFLHKVGLA
Trigger: AGCTAAACCTACCTTGTGAAGGAAATCCTCCTGCAACTTCAGGAAGATCAGAGAGCTGATTTCTCTGTTCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp GATTGTGTTGACTGTGTACAACACAAAGCCAAGGTCTGGAGAAGCTTTTCTGTACTTCTCCTTCAGGGCTaGTCGCTCTTGTTAGATGTA +
Preference number: 4 (lower is better)
Translates to: DCVDCVQHKAKVWRSFSVLLLQG*SLLLDV
Trigger: TACATCTAACAAGAGCGAGCAGCCCTGAAGGAGAAG...TACAGAAAAGCTTCTCCAGACCTTGGCTTTGTGTTGTACACAGTCAACACAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR GCA 90 bp ACAGATGACTTGGTAATCATAAAAGAACAGGAAAGACGAGAGAAAGCGAGGGTACATTTCGCCTGGAGGTaGTCAGAGCTTCTTGACAGT +
Preference number: 4 (lower is better)
Translates to: TDDLVIIKEQERREKARVHFAWR*SELLDS
Trigger: ACTGTCAAGAAGCTCTGAGCACCTCCAGGCGAAATG...TACCCTCGCTTTCTCTCGTCTTTCCTGTTCTTTTATGATTACCAAGTCATCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp ATTGCATTAAACTTGGACTTTCTGTTCACATGGACCCAGGAAGCACTGGGACGTTTAACAGCAATCAGTTaGTCATTCATTCGGAGACGG +
Preference number: 4 (lower is better)
Translates to: IALNLDFLFTWTQEALGRLTAIS*SFIRRR
Trigger: CCGTCTCCGAATGAATGACCAACTGATTGCTGTTAA...ACGTCCCAGTGCTTCCTGGGTCCATGTGAACAGAAAGTCCAAGTTTAATGCAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp GATTGTGTTGACTGTGTACAACACAAAGCCAAGGTCTGGAGAAGCTTTTCTGTAGTTTCCATGGCTTCGTaGTTGGACTTTCCCAGAAGA +
Preference number: 4 (lower is better)
Translates to: DCVDCVQHKAKVWRSFSVVSMAS*LDFPRR
Trigger: TCTTCTGGGAAAGTCCAACCACGAAGCCATGGAAAC...TACAGAAAAGCTTCTCCAGACCTTGGCTTTGTGTTGTACACAGTCAACACAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp GATTGTGTTGACTGTGTACAACACAAAGCCAAGGTCTGGAGAAGCTTTTCTGTAACAGTTCTCAAAGCCTaGTCTGGAAAGTGCTCCACA +
Preference number: 4 (lower is better)
Translates to: DCVDCVQHKAKVWRSFSVTVLKA*SGKCST
Trigger: TGTGGAGCACTTTCCAGACCAGGCTTTGAGAACTGT...TACAGAAAAGCTTCTCCAGACCTTGGCTTTGTGTTGTACACAGTCAACACAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CCTAGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGTACTATCATTTCGCCTaGAGGTGCTCAGAGCTTCTT +
Preference number: 4 (lower is better)
Translates to: PSEFSQGCKYTGSYSLLLYYHFA*RCSELL
Trigger: AAGAAGCTCTGAGCACCTCCAGGCGAAATGATAGTA...CAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACTAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CCTAGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGCTGGAAAATATCCTGTaGAATCCACTCCAGAGCTGT +
Preference number: 4 (lower is better)
Translates to: PSEFSQGCKYTGSYSLLLLENIL*NPLQSC
Trigger: ACAGCTCTGGAGTGGATTCCACAGGATATTTTCCAG...CAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACTAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp GGAGGGGGAAAGCAAGGACCATGGGACAATCAACCTTCTTCATCTGTTCACTGTGTTGACATGTTGATCTaGAAAATATCCTGTGGAATC +
Preference number: 4 (lower is better)
Translates to: GGGKQGPWDNQPSSSVHCVDMLI*KISCGI
Trigger: GATTCCACAGGATATTTTCCAGATCAACATGTCAAC...ACAGTGAACAGATGAAGAAGGTTGATTGTCCCATGGTCCTTGCTTTCCCCCTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp GATTGTGTTGACTGTGTACAACACAAAGCCAAGGTCTGGAGAAGCTTTTCTGTATATTGTTCACGGTTTTaGGGCAGAAGCACATGGAGA +
Preference number: 4 (lower is better)
Translates to: DCVDCVQHKAKVWRSFSVYCSRF*GRSTWR
Trigger: TCTCCATGTGCTTCTGCCTCAAAACCGTGAACAATA...TACAGAAAAGCTTCTCCAGACCTTGGCTTTGTGTTGTACACAGTCAACACAATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp AATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGTCTCACACCTCAAAGTATCTGAAGTTGACATGTTaGTCTGGAAAATATCCTGTG +
Preference number: 4 (lower is better)
Translates to: NICSLSALPLYRSHTSKYLKLTC*SGKYPV
Trigger: CACAGGATATTTTCCAGATCAACATGTCAACTTCAG...ATACTTTGAGGTGTGAGACCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp ACAGATGACTTGGTAATCATAAAAGAACAGGAAAGACGAGAGAAAGCGAGGGTAGATGATATGGCTTGTTaGCCTTGGCATAGAGACCCT +
Preference number: 4 (lower is better)
Translates to: TDDLVIIKEQERREKARVDDMAC*PWHRDP
Trigger: AGGGTCTCTATGCCAAGGTCAACAAGCCATATCATC...TACCCTCGCTTTCTCTCGTCTTTCCTGTTCTTTTATGATTACCAAGTCATCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075374.10
CDS-3UTR GCA 90 bp CAGCTTCTTACGTCAGAATGCTTTTCCTTTAAATCAGGTGGAGACCTTAGCTGTTTGGACCAAAATCTTTaGCTGGAGAGTCTGATCTGC +
Preference number: 4 (lower is better)
Translates to: QLLTSECFSFKSGGDLSCLDQNL*LESLIC
Trigger: GCAGATCAGACTCTCCAGGCAAAGATTTTGGTCCAA...ACAGCTAAGGTCTCCACCTGATTTAAAGGAAAAGCATTCTGACGTAAGAAGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp TCCAAGGCTCCGCTTCTCTACAATGCTATTGAATTCATCAGCCTTTTGCTCCATTTGTTTTCCACGTTCTaGGTGGAATCCAGAACAACA +
Preference number: 4 (lower is better)
Translates to: SKAPLLYNAIEFISLLLHLFSTF*VESRTT
Trigger: TGTTGTTCTGGATTCCACCCAGAACGTGGAAAACAA...ATGGAGCAAAAGGCTGATGAATTCAATAGCATTGTAGAGAAGCGGAGCCTTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CCTAGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGTTTCAGACCCAAAGTTaGACCAAAATCTTTGCCTGG +
Preference number: 4 (lower is better)
Translates to: PSEFSQGCKYTGSYSLLLFQTQS*TKIFAW
Trigger: CCAGGCAAAGATTTTGGTCCAACTTTGGGTCTGAAA...CAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACTAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CAA 72 bp GGCTTTCCAGCCAGGGGCTACTATAGTATAGCTCCATaGATTGTTAATCAGTTGTCATTCTCACCGAATCAA +
Preference number: 4 (lower is better)
Translates to: GFPARGYYSIAP*IVNQLSFSPNQ
Trigger: TTGATTCGGTGAGAATGACAACTGATTAACAATCAATGGAGCTATACTATAGTAGCCCCTGGCTGGAAAGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CAA 72 bp CCTGACAAAGAGAGACTTTTACCTCTGTGCTATTGCTaGTACTATATGTGTGTGTGTGTGTGTGTGTGTGTG +
Preference number: 4 (lower is better)
Translates to: PDKERLLPLCYC*YYMCVCVCVCV
Trigger: CACACACACACACACACACACACACATATAGTACAAGCAATAGCACAGAGGTAAAAGTCTCTCTTTGTCAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CAA 72 bp ACTTTTGTGTGCTTCTCAGGATTAGCAACGATTGTGTaGACTGTGTACAACACAAAGCCAAGGTCTGGAGAA +
Preference number: 4 (lower is better)
Translates to: TFVCFSGLATIV*TVYNTKPRSGE
Trigger: TTCTCCAGACCTTGGCTTTGTGTTGTACACAGTCAACACAATCGTTGCTAATCCTGAGAAGCACACAAAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CCTAGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGTTTCCTTTTATCTTGTaGACTATAGGTGCCAAACGG +
Preference number: 4 (lower is better)
Translates to: PSEFSQGCKYTGSYSLLLFPFIL*TIGAKR
Trigger: CCGTTTGGCACCTATAGTCCACAAGATAAAAGGAAA...CAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACTAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CCA 90 bp CCTTTCTCTGTTATAGAGCTCCCAGCTACAGAGAGATACCCTAGTGAGTTTTCCGTTGACATGTTGATCTaGAAAATATCCTGTGGAATC +
Preference number: 4 (lower is better)
Translates to: PFSVIELPATERYPSEFSVDMLI*KISCGI
Trigger: GATTCCACAGGATATTTTCCAGATCAACATGTCAAC...GGAAAACTCACTAGGGTATCTCTCTGTAGCTGGGAGCTCTATAACAGAGAAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CAA 72 bp GGCTACTATAGTATAGCTCCATTGATTGTTAATCAGTaGTCATTCTCACCGAATCAACCAATCCTGCAAGCC +
Preference number: 4 (lower is better)
Translates to: GYYSIAPLIVNQ*SFSPNQPILQA
Trigger: GGCTTGCAGGATTGGTTGATTCGGTGAGAATGACAACTGATTAACAATCAATGGAGCTATACTATAGTAGCC
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp GATTGTGTTGACTGTGTACAACACAAAGCCAAGGTCTGGAGAAGCTTTTCTGTAGGAGTTCCACATTGTTaGTTTTTACAATGCACTCAT +
Preference number: 4 (lower is better)
Translates to: DCVDCVQHKAKVWRSFSVGVPHC*FLQCTH
Trigger: ATGAGTGCATTGTAAAAATCAACAATGTGGAACTCC...TACAGAAAAGCTTCTCCAGACCTTGGCTTTGTGTTGTACACAGTCAACACAATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR TCA 90 bp ACAGATGACTTGGTAATCATAAAAGAACAGGAAAGACGAGAGAAAGCGAGGGTAGGAGTTCCACATTGTTaGTTTTTACAATGCACTCAT +
Preference number: 4 (lower is better)
Translates to: TDDLVIIKEQERREKARVGVPHC*FLQCTH
Trigger: ATGAGTGCATTGTAAAAATCAACAATGTGGAACTCC...TACCCTCGCTTTCTCTCGTCTTTCCTGTTCTTTTATGATTACCAAGTCATCTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
3UTR CAA 72 bp CCAGCAAATGACGCTATTTACGTCGAAAACCAGCAATaGCATCATTGCTGGCCACAAAAGTATTTCAAATTA +
Preference number: 4 (lower is better)
Translates to: PANDAIYVENQQ*HHCWPQKYFKL
Trigger: TAATTTGAAATACTTTTGTGGCCAGCAATGATGCAATTGCTGGTTTTCGACGTAAATAGCGTCATTTGCTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 90 bp CCAGGATCCTGGTCCCGGGTCTTCAGGTACCGCTGCAGCGCCTGCTaGGTGAGCTCGCGGACCCGGAGCTGGCCGTCCTTGCAGGGCACC +
Preference number: 5 (lower is better)
Translates to: PGSWSRVFRYRCSAC*VSSRTRSWPSLQGT
Trigger: GGTGCCCTGCAAGGACGGCCAGCTCCGGGTCCGCGAGCTCACCCAGCAGGCGCTGCAGCGGTACCTGAAGACCCGGGACCAGGATCCTGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 90 bp TATCCAGGATCCTGGTCCCGGGTCTTCAGGTACCGCTGCAGCGCCTaGTGGGTGAGCTCGCGGACCCGGAGCTGGCCGTCCTTGCAGGGC +
Preference number: 5 (lower is better)
Translates to: YPGSWSRVFRYRCSA*WVSSRTRSWPSLQG
Trigger: GCCCTGCAAGGACGGCCAGCTCCGGGTCCGCGAGCTCACCCAGCAGGCGCTGCAGCGGTACCTGAAGACCCGGGACCAGGATCCTGGATA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 90 bp TTCACCCAGTATCCAGGATCCTGGTCCCGGGTCTTCAGGTACCGCTaGAGCGCCTGCTGGGTGAGCTCGCGGACCCGGAGCTGGCCGTCC +
Preference number: 5 (lower is better)
Translates to: FTQYPGSWSRVFRYR*SACWVSSRTRSWPS
Trigger: GGACGGCCAGCTCCGGGTCCGCGAGCTCACCCAGCAGGCGCTGCAGCGGTACCTGAAGACCCGGGACCAGGATCCTGGATACTGGGTGAA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 90 bp CTGGCCCATCGTACGATTTGTCGATGGCTGCTCGGAAGCTCTCGTTaGAGCCTCGGCCCCGCACCATGTGTGGTCTGGGCCTGTGGAAGG +
Preference number: 5 (lower is better)
Translates to: LAHRTICRWLLGSSR*SLGPAPCVVWACGR
Trigger: CCTTCCACAGGCCCAGACCACACATGGTGCGGGGCCGAGGCTGCAACGAGAGCTTCCGAGCAGCCATCGACAAATCGTACGATGGGCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 90 bp TACGATAGGGGTATTGGTCAGGGCTGCTCCCTCGGGGCCCTGCTCTaGCCATCTCCTGGTAGACCGGTACTCGCTGGTGCTGAGGTGGTG +
Preference number: 5 (lower is better)
Translates to: YDRGIGQGCSLGALL*PSPGRPVLAGAEVV
Trigger: CACCACCTCAGCACCAGCGAGTACCGGTCTACCAGGAGATGGGCAGAGCAGGGCCCCGAGGGAGCAGCCCTGACCAATACCCCTATCGTA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 90 bp CTGGTTACGATAGGGGTATTGGTCAGGGCTGCTCCCTCGGGGCCCTaGTCTGCCCATCTCCTGGTAGACCGGTACTCGCTGGTGCTGAGG +
Preference number: 5 (lower is better)
Translates to: LVTIGVLVRAAPSGP*SAHLLVDRYSLVLR
Trigger: CCTCAGCACCAGCGAGTACCGGTCTACCAGGAGATGGGCAGAGCAGGGCCCCGAGGGAGCAGCCCTGACCAATACCCCTATCGTAACCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 90 bp GGCTGCTCGGAAGCTCTCGTTGCAGCCTCGGCCCCGCACCATGTGTaGTCTGGGCCTGTGGAAGGGCAGATCATTCTTCCTGACTTCAGC +
Preference number: 5 (lower is better)
Translates to: GCSEALVAASAPHHV*SGPVEGQIILPDFS
Trigger: GCTGAAGTCAGGAAGAATGATCTGCCCTTCCACAGGCCCAGACCACACATGGTGCGGGGCCGAGGCTGCAACGAGAGCTTCCGAGCAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 90 bp CTGCCGCTCCATCCCCTCAAAGCGGAGGTTGTGTGTGCTCCCATCTaGACCCTTTCCAGACACCCAGCGGAGGTCATGGTCAGATGGCCG +
Preference number: 5 (lower is better)
Translates to: LPLHPLKAEVVCAPI*TLSRHPAEVMVRWP
Trigger: CGGCCATCTGACCATGACCTCCGCTGGGTGTCTGGAAAGGGTCCAGATGGGAGCACACACAACCTCCGCTTTGAGGGGATGGAGCGGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 90 bp ATTCGGAGACGGCCATCCAGCTCTCGGGGCAGGAAGCTCCCTTCCTaGCGGGCAATGACCAATGACACTGTCTCTCCCTGCTTGGTGCTC +
Preference number: 5 (lower is better)
Translates to: IRRRPSSSRGRKLPS*RAMTNDTVSPCLVL
Trigger: GAGCACCAAGCAGGGAGAGACAGTGTCATTGGTCATTGCCCGCCAGGAAGGGAGCTTCCTGCCCCGAGAGCTGGATGGCCGTCTCCGAAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046673.11
CDS CCA 90 bp CTCTCGTTGCAGCCTCGGCCCCGCACCATGTGTGGTCTGGGCCTGTaGAAGGGCAGATCATTCTTCCTGACTTCAGCCACAGCCGTCTGT +
Preference number: 5 (lower is better)
Translates to: LSLQPRPRTMCGLGL*KGRSFFLTSATAVC
Trigger: ACAGACGGCTGTGGCTGAAGTCAGGAAGAATGATCTGCCCTTCCACAGGCCCAGACCACACATGGTGCGGGGCCGAGGCTGCAACGAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS TCA 90 bp GGCCATCCAGCTCTCGGGGCAGGAAGCTCCCTTCCTGGCGGGCAATaGCCAATGACACTGTCTCTCCCTGCTTGGTGCTCCTTAACATGG +
Preference number: 5 (lower is better)
Translates to: GHPALGAGSSLPGGQ*PMTLSLPAWCSLTW
Trigger: CCATGTTAAGGAGCACCAAGCAGGGAGAGACAGTGTCATTGGTCATTGCCCGCCAGGAAGGGAGCTTCCTGCCCCGAGAGCTGGATGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046673.11
CDS GCA 90 bp GCAGCCAGTTGGGCAGCCACTTCTGTCTCGAAAGCATCTGGGCTCTaGCGATCCGCAGGGTTTCCACCGGGGCTCTCAGTCTTTTGGAGT +
Preference number: 5 (lower is better)
Translates to: AASWAATSVSKASGL*RSAGFPPGLSVFWS
Trigger: ACTCCAAAAGACTGAGAGCCCCGGTGGAAACCCTGCGGATCGGCAGAGCCCAGATGCTTTCGAGACAGAAGTGGCTGCCCAACTGGCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 90 bp ACCCTTCTCTCCGAGCCTGGTAATACTCCTTCCGAAGCTTCTGGATaGGGTCCGTGGTTCCAGCCATGGGTCGGCCACTGTCAGCTAGGG +
Preference number: 5 (lower is better)
Translates to: TLLSEPGNTPSEASG*GPWFQPWVGHCQLG
Trigger: CCCTAGCTGACAGTGGCCGACCCATGGCTGGAACCACGGACCGCATCCAGAAGCTTCGGAAGGAGTATTACCAGGCTCGGAGAGAAGGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
CDS GCA 90 bp AGGATGCGTACTGCCGCTCCATCCCCTCAAAGCGGAGGTTGTGTGTaGTCCCATCTGGACCCTTTCCAGACACCCAGCGGAGGTCATGGT +
Preference number: 5 (lower is better)
Translates to: RMRTAAPSPQSGGCV*SHLDPFQTPSGGHG
Trigger: ACCATGACCTCCGCTGGGTGTCTGGAAAGGGTCCAGATGGGAGCACACACAACCTCCGCTTTGAGGGGATGGAGCGGCAGTACGCATCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS TCA 90 bp GGGGTTTCCCTGAGGGGCAGACTCACAATTCAGAGCTGTGTGGCCTaGGCGAGAGCTCTTATCAGACAGACCATCCGCGTCTGCCTCTTC +
Preference number: 5 (lower is better)
Translates to: GVSLRGRLTIQSCVA*ARALIRQTIRVCLF
Trigger: GAAGAGGCAGACGCGGATGGTCTGTCTGATAAGAGCTCTCGCTCAGGCCACACAGCTCTGAATTGTGAGTCTGCCCCTCAGGGAAACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS TCA 90 bp TCTGCCCATCTCCTGGTAGACCGGTACTCGCTGGTGCTGAGGTGGTaGAGGAGGAACATCTTGTCTGAAGGGCCCTTTGTGCTGATGGGC +
Preference number: 5 (lower is better)
Translates to: SAHLLVDRYSLVLRW*RRNILSEGPFVLMG
Trigger: GCCCATCAGCACAAAGGGCCCTTCAGACAAGATGTTCCTCCTTCACCACCTCAGCACCAGCGAGTACCGGTCTACCAGGAGATGGGCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS TCA 90 bp CTCCTTTCAGCTCTCGGGGCAGGAAGCTCCCTTCCTGGCGGGCAATaGCCAATGACACTGTCTCTCCCTGCTTGGTGCTCCTTAACATGG +
Preference number: 5 (lower is better)
Translates to: LLSALGAGSSLPGGQ*PMTLSLPAWCSLTW
Trigger: CCATGTTAAGGAGCACCAAGCAGGGAGAGACAGTGTCATTGGTCATTGCCCGCCAGGAAGGGAGCTTCCTGCCCCGAGAGCTGAAAGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 90 bp AATCCAGAACAACAGGTTTCAAACTCTGGCCACTCAGGCTTGCAGTaGTTGGCTGGGCATCAGCATGGGGCCCTGGTGCTGGGTCACTGC +
Preference number: 5 (lower is better)
Translates to: NPEQQVSNSGHSGLQ*LAGHQHGALVLGHC
Trigger: GCAGTGACCCAGCACCAGGGCCCCATGCTGATGCCCAGCCAAGCACTGCAAGCCTGAGTGGCCAGAGTTTGAAACCTGTTGTTCTGGATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 90 bp ACCCTTCTCTCCGAGCCTGGTAATACTCCTTCCGAAGCTTCTGGATaGGGTCCGTGGTTCCAGCCATGGGTCGGCCACTCTCTCTCTCTT +
Preference number: 5 (lower is better)
Translates to: TLLSEPGNTPSEASG*GPWFQPWVGHSLSL
Trigger: AAGAGAGAGAGAGTGGCCGACCCATGGCTGGAACCACGGACCGCATCCAGAAGCTTCGGAAGGAGTATTACCAGGCTCGGAGAGAAGGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094906.4
CDS CCA 90 bp ACAACAGGTTTCAAACTCTGGCCACTCAGGCTTGCAGTGCTTGGCTaGGCATCAGCATGGGGCCCTGGTGCTGGGTCACTGCTTCTCCTA +
Preference number: 5 (lower is better)
Translates to: TTGFKLWPLRLAVLG*ASAWGPGAGSLLLL
Trigger: TAGGAGAAGCAGTGACCCAGCACCAGGGCCCCATGCTGATGCCCAGCCAAGCACTGCAAGCCTGAGTGGCCAGAGTTTGAAACCTGTTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 90 bp GCTGTGACTGAAATCTTCAAGGCCCCATTCCAGAGCAGGATGTGGTaGCGGGGACGGTGGTACTTCATTCTCAGCCCACCCATCACTGGG +
Preference number: 5 (lower is better)
Translates to: AVTEIFKAPFQSRMW*RGRWYFILSPPITG
Trigger: CCCAGTGATGGGTGGGCTGAGAATGAAGTACCACCGTCCCCGCCACCACATCCTGCTCTGGAATGGGGCCTTGAAGATTTCAGTCACAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 90 bp CAATCAGGTTCTCCTTTCAGCTCTCGGGGCAGGAAGCTCCCTTCCTaGCGGGCAATGACCAATGACACTGTCTCTCCCTGCTTGGTGCTC +
Preference number: 5 (lower is better)
Translates to: QSGSPFSSRGRKLPS*RAMTNDTVSPCLVL
Trigger: GAGCACCAAGCAGGGAGAGACAGTGTCATTGGTCATTGCCCGCCAGGAAGGGAGCTTCCTGCCCCGAGAGCTGAAAGGAGAACCTGATTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS TCA 90 bp GCACCATGTGTGGTCTGGGCCTGTGGAAGGGCAGATCATTCTTCCTaGCTTCAGCCACAGCCGTCTGTAGGCTCTCCAAGGAACTGGACT +
Preference number: 5 (lower is better)
Translates to: APCVVWACGRADHSS*LQPQPSVGSPRNWT
Trigger: AGTCCAGTTCCTTGGAGAGCCTACAGACGGCTGTGGCTGAAGTCAGGAAGAATGATCTGCCCTTCCACAGGCCCAGACCACACATGGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 90 bp TTTAAATGCAGCCAGTTGGGCAGCCACTTCTGTCTCGAAAGCATCTaGGCTCTGCCGATCCGCAGGGTTTCCACCGGGGCTCTCAGTCTT +
Preference number: 5 (lower is better)
Translates to: FKCSQLGSHFCLESI*ALPIRRVSTGALSL
Trigger: AAGACTGAGAGCCCCGGTGGAAACCCTGCGGATCGGCAGAGCCCAGATGCTTTCGAGACAGAAGTGGCTGCCCAACTGGCTGCATTTAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp CAGCTCTCTGATCTTCCTGAAGTTGCAGGAGGATTTCCTTCACAAGGTAGGTTTGCTCGGAAGCTCTCGTaGCAGCCTCGGCCCCGCACC +
Preference number: 5 (lower is better)
Translates to: QLSDLPEVAGGFPSQGRFARKLS*QPRPRT
Trigger: GGTGCGGGGCCGAGGCTGCAACGAGAGCTTCCGAGC...AAACCTACCTTGTGAAGGAAATCCTCCTGCAACTTCAGGAAGATCAGAGAGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp AAGCAAGAGCCACTCTGTACCACGGAACACCTTAGCCCAGAGAAGGCCTTAGGTCGGAGACGGCCATCCTaGAAAGCAGCACCTCCATGG +
Preference number: 5 (lower is better)
Translates to: KQEPLCTTEHLSPEKALGRRRPS*KAAPPW
Trigger: CCATGGAGGTGCTGCTTTCAAGGATGGCCGTCTCCG...ACCTAAGGCCTTCTCTGGGCTAAGGTGTTCCGTGGTACAGAGTGGCTCTTGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS TCA 90 bp TGGGTCGGCCACTGTCAGCTAGGGCTGGTGGATGATATGGCTTGTTaGCCTTGGCATAGAGACCCTCTAAGTGGTCTGGAGACAGTGGAC +
Preference number: 5 (lower is better)
Translates to: WVGHCQLGLVDDMAC*PWHRDPLSGLETVD
Trigger: GTCCACTGTCTCCAGACCACTTAGAGGGTCTCTATGCCAAGGTCAACAAGCCATATCATCCACCAGCCCTAGCTGACAGTGGCCGACCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
CDS CCA 90 bp GGGGTTACTACGATTTCCCCACCGACAGGTTTAAATGCAGCCAGTTaGGCAGCCACTTCTGTCTCGAAAGCATCTGGGCTCTGCCGATCC +
Preference number: 5 (lower is better)
Translates to: GVTTISPPTGLNAAS*AATSVSKASGLCRS
Trigger: GGATCGGCAGAGCCCAGATGCTTTCGAGACAGAAGTGGCTGCCCAACTGGCTGCATTTAAACCTGTCGGTGGGGAAATCGTAGTAACCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 90 bp AGAGCTGTGACTGAAATCTTCAAGGCCCCATTCCAGAGCAGGATGTaGTGGCGGGGACGGTGGTACTTCATTCTCAGCCCACCCATCACT +
Preference number: 5 (lower is better)
Translates to: RAVTEIFKAPFQSRM*WRGRWYFILSPPIT
Trigger: AGTGATGGGTGGGCTGAGAATGAAGTACCACCGTCCCCGCCACCACATCCTGCTCTGGAATGGGGCCTTGAAGATTTCAGTCACAGCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 90 bp GGGCTCTGCCGATCCGCAGGGTTTCCACCGGGGCTCTCAGTCTTTTaGAGTGGCTCTTGTTCGTCAAACACAGCAATCAGCTTATCTTTG +
Preference number: 5 (lower is better)
Translates to: GLCRSAGFPPGLSVF*SGSCSSNTAISLSL
Trigger: CAAAGATAAGCTGATTGCTGTGTTTGACGAACAAGAGCCACTCCAAAAGACTGAGAGCCCCGGTGGAAACCCTGCGGATCGGCAGAGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 90 bp TTTTCCACGTTCTGGGTGGAATCCAGAACAACAGGTTTCAAACTCTaGCCACTCAGGCTTGCAGTGCTTGGCTGGGCATCAGCATGGGGC +
Preference number: 5 (lower is better)
Translates to: FSTFWVESRTTGFKL*PLRLAVLGWASAWG
Trigger: GCCCCATGCTGATGCCCAGCCAAGCACTGCAAGCCTGAGTGGCCAGAGTTTGAAACCTGTTGTTCTGGATTCCACCCAGAACGTGGAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp CAGCTTCTTACGTCAGAATGCTTTTCCTTTAAATCAGGTGGAGACCTTAGCTGTGCTCGGAAGCTCTCGTaGCAGCCTCGGCCCCGCACC +
Preference number: 5 (lower is better)
Translates to: QLLTSECFSFKSGGDLSCARKLS*QPRPRT
Trigger: GGTGCGGGGCCGAGGCTGCAACGAGAGCTTCCGAGC...ACAGCTAAGGTCTCCACCTGATTTAAAGGAAAAGCATTCTGACGTAAGAAGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp CATGTACGCGGTTGCTTTGTTCTCAGTGAATATCTGCAGCCTCTCTGCTCTGCCCCCTCAAAGCGGAGGTaGTGTGTGCTCCCATCTGGA +
Preference number: 5 (lower is better)
Translates to: HVRGCFVLSEYLQPLCSAPSKRR*CVLPSG
Trigger: TCCAGATGGGAGCACACACAACCTCCGCTTTGAGGG...GGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAACCGCGTACATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS TCA 90 bp CCAAAATCTTTGCCTGGAGAGTCTGATCTGCGATCCGCCAGCGACTaGACTTTGCCTTCATCTGGCACAAGGTCCATGCTCTTGGAGGCT +
Preference number: 5 (lower is better)
Translates to: PKSLPGESDLRSASD*TLPSSGTRSMLLEA
Trigger: AGCCTCCAAGAGCATGGACCTTGTGCCAGATGAAGGCAAAGTTCAGTCGCTGGCGGATCGCAGATCAGACTCTCCAGGCAAAGATTTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 90 bp CAGAGCAGAAGGGGTTACTACGATTTCCCCACCGACAGGTTTAAATaGAGCCAGTTGGGCAGCCACTTCTGTCTCGAAAGCATCTGGGCT +
Preference number: 5 (lower is better)
Translates to: QSRRGYYDFPTDRFK*SQLGSHFCLESIWA
Trigger: AGCCCAGATGCTTTCGAGACAGAAGTGGCTGCCCAACTGGCTGCATTTAAACCTGTCGGTGGGGAAATCGTAGTAACCCCTTCTGCTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 90 bp AAGCTCCCTTCCTGGCGGGCAATGACCAATGACACTGTCTCTCCCTaGTTGGTGCTCCTTAACATGGCCACGAGTTCTTCTTGGGTTCTT +
Preference number: 5 (lower is better)
Translates to: KLPSWRAMTNDTVSP*LVLLNMATSSSWVL
Trigger: AAGAACCCAAGAAGAACTCGTGGCCATGTTAAGGAGCACCAAGCAGGGAGAGACAGTGTCATTGGTCATTGCCCGCCAGGAAGGGAGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 90 bp TCCAGCTCCTCTTCCTCCGGGTGGCCGGACTTCTGCGCACCTTTCTaGTCAGCCTTTCCGACCTTATCATCTTTCTTCTTTCCAAATCTC +
Preference number: 5 (lower is better)
Translates to: SSSSSSGWPDFCAPF*SAFPTLSSFFFPNL
Trigger: GAGATTTGGAAAGAAGAAAGATGATAAGGTCGGAAAGGCTGAGCAGAAAGGTGCGCAGAAGTCCGGCCACCCGGAGGAAGAGGAGCTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 90 bp GGGGTCCATTTCGTCATCGTCCATATCGTGCACTGGTCCAGTCACTaGCGTGGCATAATCAACAAGGCCTCTTGCCTGCTTTTCTCTCAG +
Preference number: 5 (lower is better)
Translates to: GVHFVIVHIVHWSSH*RGIINKASCLLFSQ
Trigger: CTGAGAGAAAAGCAGGCAAGAGGCCTTGTTGATTATGCCACGGCAGTGACTGGACCAGTGCACGATATGGACGATGACGAAATGGACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
CDS CCA 90 bp TGGTTGGACTTTCCCAGAAGAGTTTCCCCGTTAACAGCAATCAGTTaGTCATTCATTCGGAGACGGCCATCCAGCTCTCGGGGCAGGAAG +
Preference number: 5 (lower is better)
Translates to: WLDFPRRVSPLTAIS*SFIRRRPSSSRGRK
Trigger: CTTCCTGCCCCGAGAGCTGGATGGCCGTCTCCGAATGAATGACCAACTGATTGCTGTTAACGGGGAAACTCTTCTGGGAAAGTCCAACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046673.11
CDS CCA 90 bp GCCTGGAGGTGCTCAGAGCTTCTTGACAGTTCTCAAAGCCTGGTCTaGAAAGTGCTCCACATTCTGAAAGCTCCTCCAGTGGTCTCTCAG +
Preference number: 5 (lower is better)
Translates to: AWRCSELLDSSQSLV*KVLHILKAPPVVSQ
Trigger: CTGAGAGACCACTGGAGGAGCTTTCAGAATGTGGAGCACTTTCCAGACCAGGCTTTGAGAACTGTCAAGAAGCTCTGAGCACCTCCAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp GTTGCTTTGTTCTCAGTGAATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGTCTGGCCACTCAGGCTaGCAGTGCTTGGCTGGGCAT +
Preference number: 5 (lower is better)
Translates to: VALFSVNICSLSALPLYRSGHSG*QCLAGH
Trigger: ATGCCCAGCCAAGCACTGCAAGCCTGAGTGGCCAGA...CCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp GGAACGGAACACTTTCTGAAGAGCAGATCAAGAGATGGGCTCAAAGAGTCTGTGTCTGGCCACTCAGGCTaGCAGTGCTTGGCTGGGCAT +
Preference number: 5 (lower is better)
Translates to: GTEHFLKSRSRDGLKESVSGHSG*QCLAGH
Trigger: ATGCCCAGCCAAGCACTGCAAGCCTGAGTGGCCAGA...CACAGACTCTTTGAGCCCATCTCTTGATCTGCTCTTCAGAAAGTGTTCCGTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp CTTACTGCCCCAGCTTTTCTTAACCATTGCTTGGCTTGCTGTAGCCTCTGTCACCCCTCAAAGCGGAGGTaGTGTGTGCTCCCATCTGGA +
Preference number: 5 (lower is better)
Translates to: LTAPAFLNHCLACCSLCHPSKRR*CVLPSG
Trigger: TCCAGATGGGAGCACACACAACCTCCGCTTTGAGGG...GTGACAGAGGCTACAGCAAGCCAAGCAATGGTTAAGAAAAGCTGGGGCAGTAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 90 bp GTGCACTGGTCCAGTCACTGCCGTGGCATAATCAACAAGGCCTCTTaGCTGCTTTTCTCTCAGCTCCTGATGTTTTGCTCCAATCCTCTC +
Preference number: 5 (lower is better)
Translates to: VHWSSHCRGIINKAS*LLFSQLLMFCSNPL
Trigger: GAGAGGATTGGAGCAAAACATCAGGAGCTGAGAGAAAAGCAGGCAAGAGGCCTTGTTGATTATGCCACGGCAGTGACTGGACCAGTGCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
CDS CCA 90 bp CTGCCGATCCGCAGGGTTTCCACCGGGGCTCTCAGTCTTTTGGAGTaGCTCTTGTTCGTCAAACACAGCAATCAGCTTATCTTTGTCTTC +
Preference number: 5 (lower is better)
Translates to: LPIRRVSTGALSLLE*LLFVKHSNQLIFVF
Trigger: GAAGACAAAGATAAGCTGATTGCTGTGTTTGACGAACAAGAGCCACTCCAAAAGACTGAGAGCCCCGGTGGAAACCCTGCGGATCGGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 90 bp CCATTTCGTCATCGTCCATATCGTGCACTGGTCCAGTCACTGCCGTaGCATAATCAACAAGGCCTCTTGCCTGCTTTTCTCTCAGCTCCT +
Preference number: 5 (lower is better)
Translates to: PFRHRPYRALVQSLP*HNQQGLLPAFLSAP
Trigger: AGGAGCTGAGAGAAAAGCAGGCAAGAGGCCTTGTTGATTATGCCACGGCAGTGACTGGACCAGTGCACGATATGGACGATGACGAAATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
CDS CCA 90 bp TCTGGCATAATTGGGGTCCATTTCGTCATCGTCCATATCGTGCACTaGTCCAGTCACTGCCGTGGCATAATCAACAAGGCCTCTTGCCTG +
Preference number: 5 (lower is better)
Translates to: SGIIGVHFVIVHIVH*SSHCRGIINKASCL
Trigger: CAGGCAAGAGGCCTTGTTGATTATGCCACGGCAGTGACTGGACCAGTGCACGATATGGACGATGACGAAATGGACCCCAATTATGCCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
CDS CCA 90 bp TGTGTGCTCCCATCTGGACCCTTTCCAGACACCCAGCGGAGGTCATaGTCAGATGGCCGTGCTCTTGTGTTTTCATCTTCATACAAAAGG +
Preference number: 5 (lower is better)
Translates to: CVLPSGPFPDTQRRS*SDGRALVFSSSYKR
Trigger: CCTTTTGTATGAAGATGAAAACACAAGAGCACGGCCATCTGACCATGACCTCCGCTGGGTGTCTGGAAAGGGTCCAGATGGGAGCACACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp CATGTACGCGGTTGCTTTGTTCTCAGTGAATATCTGCAGCCTCTCTGCTCTGCCGTTTTCTTCCTAGTCTaGGAACCCGGGGACTCTTGC +
Preference number: 5 (lower is better)
Translates to: HVRGCFVLSEYLQPLCSAVFFLV*EPGDSC
Trigger: GCAAGAGTCCCCGGGTTCCAAGACTAGGAAGAAAAC...GGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAACCGCGTACATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp ATTGCATTAAACTTGGACTTTCTGTTCACATGGACCCAGGAAGCACTGGGACGTCGGAGACGGCCATCCTaGAAAGCAGCACCTCCATGG +
Preference number: 5 (lower is better)
Translates to: IALNLDFLFTWTQEALGRRRRPS*KAAPPW
Trigger: CCATGGAGGTGCTGCTTTCAAGGATGGCCGTCTCCG...ACGTCCCAGTGCTTCCTGGGTCCATGTGAACAGAAAGTCCAAGTTTAATGCAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp CATGTACGCGGTTGCTTTGTTCTCAGTGAATATCTGCAGCCTCTCTGCTCTGCCCTGGCGGAAGACATCTaGGGCCTGAGCAAAAGTTTT +
Preference number: 5 (lower is better)
Translates to: HVRGCFVLSEYLQPLCSALAEDI*GLSKSF
Trigger: AAAACTTTTGCTCAGGCCCAAGATGTCTTCCGCCAG...GGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAACCGCGTACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp GGACCAGGAGGGGGAAAGCAAGGACCATGGGACAATCAACCTTCTTCATCTGTTCACTGGGAGATTTCATaGCCTGGCGGAAGACATCTT +
Preference number: 5 (lower is better)
Translates to: GPGGGKQGPWDNQPSSSVHWEIS*PGGRHL
Trigger: AAGATGTCTTCCGCCAGGCAATGAAATCTCCCAGTG...AACAGATGAAGAAGGTTGATTGTCCCATGGTCCTTGCTTTCCCCCTCCTGGTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp CTTGTGCACGTGTTCTTGTCTTGGTCACACAGGAAGCTTCAGATGCTGTGCTGTGGTGCTCAGAGCTTCTaGACAGTTCTCAAAGCCTGG +
Preference number: 5 (lower is better)
Translates to: LVHVFLSWSHRKLQMLCCGAQSF*TVLKAW
Trigger: CCAGGCTTTGAGAACTGTCAAGAAGCTCTGAGCACC...ACAGCACAGCATCTGAAGCTTCCTGTGTGACCAAGACAAGAACACGTGCACAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp ATTGCATTAAACTTGGACTTTCTGTTCACATGGACCCAGGAAGCACTGGGACGTGTTACGATAGGGGTATaGGTCAGGGCTGCTCCCTCG +
Preference number: 5 (lower is better)
Translates to: IALNLDFLFTWTQEALGRVTIGV*VRAAPS
Trigger: CGAGGGAGCAGCCCTGACCAATACCCCTATCGTAAC...ACGTCCCAGTGCTTCCTGGGTCCATGTGAACAGAAAGTCCAAGTTTAATGCAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS TCA 90 bp CTTTTTCAGACCCAAAGTTGGACCAAAATCTTTGCCTGGAGAGTCTaGTCTGCGATCCGCCAGCGACTGAACTTTGCCTTCATCTGGCAC +
Preference number: 5 (lower is better)
Translates to: LFQTQSWTKIFAWRV*SAIRQRLNFAFIWH
Trigger: GTGCCAGATGAAGGCAAAGTTCAGTCGCTGGCGGATCGCAGATCAGACTCTCCAGGCAAAGATTTTGGTCCAACTTTGGGTCTGAAAAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 90 bp CCAAGGAACTGGACTTTTTCAGACCCAAAGTTGGACCAAAATCTTTaGCTGGAGAGTCTGATCTGCGATCCGCCAGCGACTGAACTTTGC +
Preference number: 5 (lower is better)
Translates to: PRNWTFSDPKLDQNL*LESLICDPPATELC
Trigger: GCAAAGTTCAGTCGCTGGCGGATCGCAGATCAGACTCTCCAGGCAAAGATTTTGGTCCAACTTTGGGTCTGAAAAAGTCCAGTTCCTTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 90 bp TTGCTGATGCACATGGTTCCCGAAAGTGGTTCACTCTGGCATAATTaGGGTCCATTTCGTCATCGTCCATATCGTGCACTGGTCCAGTCA +
Preference number: 5 (lower is better)
Translates to: LLMHMVPESGSLWHN*GPFRHRPYRALVQS
Trigger: TGACTGGACCAGTGCACGATATGGACGATGACGAAATGGACCCCAATTATGCCAGAGTGAACCACTTTCGGGAACCATGTGCATCAGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
CDS CCA 90 bp TGGTTGGACTTTCCCAGAAGAGTTTCCCCGTTAACAGCAATCAGTTaGTCATTCATTCGGAGACGGCCATCCTTGAAAGCAGCACCTCCA +
Preference number: 5 (lower is better)
Translates to: WLDFPRRVSPLTAIS*SFIRRRPSLKAAPP
Trigger: TGGAGGTGCTGCTTTCAAGGATGGCCGTCTCCGAATGAATGACCAACTGATTGCTGTTAACGGGGAAACTCTTCTGGGAAAGTCCAACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp GGACCAGGAGGGGGAAAGCAAGGACCATGGGACAATCAACCTTCTTCATCTGTTAATAGTCCCTCCTGCTaGCACCTGCTGTTTTCTTCA +
Preference number: 5 (lower is better)
Translates to: GPGGGKQGPWDNQPSSSVNSPSC*HLLFSS
Trigger: TGAAGAAAACAGCAGGTGCAAGCAGGAGGGACTATT...AACAGATGAAGAAGGTTGATTGTCCCATGGTCCTTGCTTTCCCCCTCCTGGTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp AAGGAGCTATCTCCAAGCAAGCATGCCAGGGACCAGGAGGGGGAAAGCAAGGACTTGTTGCCAAAAATGTaGAGTGGTCCAATGACTGAT +
Preference number: 5 (lower is better)
Translates to: KELSPSKHARDQEGESKDLLPKM*SGPMTD
Trigger: ATCAGTCATTGGACCACTCAACATTTTTGGCAACAA...GTCCTTGCTTTCCCCCTCCTGGTCCCTGGCATGCTTGCTTGGAGATAGCTCCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp GGACCAGGAGGGGGAAAGCAAGGACCATGGGACAATCAACCTTCTTCATCTGTTTCAGCTCCTGATGTTTaGCTCCAATCCTCTCTCTCT +
Preference number: 5 (lower is better)
Translates to: GPGGGKQGPWDNQPSSSVSAPDV*LQSSLS
Trigger: AGAGAGAGAGGATTGGAGCAAAACATCAGGAGCTGA...AACAGATGAAGAAGGTTGATTGTCCCATGGTCCTTGCTTTCCCCCTCCTGGTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000075374.10
CDS TCA 90 bp CACAGCTCTCGTCATATCACTCAGCTCATCCTTCGGTCTGTGCAGTaGAAGCAGCCCTGCCTGTTCACCATTCATAGCTTCTTTGTTTTC +
Preference number: 5 (lower is better)
Translates to: HSSRHITQLILRSVQ*KQPCLFTIHSFFVF
Trigger: GAAAACAAAGAAGCTATGAATGGTGAACAGGCAGGGCTGCTTTCACTGCACAGACCGAAGGATGAGCTGAGTGATATGACGAGAGCTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS TCA 90 bp AAGTGGTCCAGCTCGAAGGGGAGATGGAGATCTAAAGACATTTGCTaGTGCACATGGTTCCCGAAAGTGGTTCACTCTGGCATAATTGGG +
Preference number: 5 (lower is better)
Translates to: KWSSSKGRWRSKDIC*CTWFPKVVHSGIIG
Trigger: CCCAATTATGCCAGAGTGAACCACTTTCGGGAACCATGTGCATCAGCAAATGTCTTTAGATCTCCATCTCCCCTTCGAGCTGGACCACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
CDS CCA 90 bp CATATTGTTCACGGTTTTGAGGCAGAAGCACATGGAGAATCACACTaGGAGATTTCATTGCCTGGCGGAAGACATCTTGGGCCTGAGCAA +
Preference number: 5 (lower is better)
Translates to: HIVHGFEAEAHGESH*EISLPGGRHLGPEQ
Trigger: TTGCTCAGGCCCAAGATGTCTTCCGCCAGGCAATGAAATCTCCCAGTGTGATTCTCCATGTGCTTCTGCCTCAAAACCGTGAACAATATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 90 bp GGGCTGCCTGACTGGTGTCACCGTTCTGAAGTTGACATGTTGATCTaGAAAATATCCTGTGGAATCCACTCCAGAGCTGTGACTGAAATC +
Preference number: 5 (lower is better)
Translates to: GLPDWCHRSEVDMLI*KISCGIHSRAVTEI
Trigger: GATTTCAGTCACAGCTCTGGAGTGGATTCCACAGGATATTTTCCAGATCAACATGTCAACTTCAGAACGGTGACACCAGTCAGGCAGCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp GGACCAGGAGGGGGAAAGCAAGGACCATGGGACAATCAACCTTCTTCATCTGTTGTTAACAGCAATCAGTaGGTCATTCATTCGGAGACG +
Preference number: 5 (lower is better)
Translates to: GPGGGKQGPWDNQPSSSVVNSNQ*VIHSET
Trigger: CGTCTCCGAATGAATGACCAACTGATTGCTGTTAAC...AACAGATGAAGAAGGTTGATTGTCCCATGGTCCTTGCTTTCCCCCTCCTGGTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp CCTTTCTCTGTTATAGAGCTCCCAGCTACAGAGAGATACCCTAGTGAGTTTTCCGGTGCTCAGAGCTTCTaGACAGTTCTCAAAGCCTGG +
Preference number: 5 (lower is better)
Translates to: PFSVIELPATERYPSEFSGAQSF*TVLKAW
Trigger: CCAGGCTTTGAGAACTGTCAAGAAGCTCTGAGCACC...GGAAAACTCACTAGGGTATCTCTCTGTAGCTGGGAGCTCTATAACAGAGAAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp CTTACTGCCCCAGCTTTTCTTAACCATTGCTTGGCTTGCTGTAGCCTCTGTCACGTTGGACCAAAATCTTaGCCTGGAGAGTCTGATCTG +
Preference number: 5 (lower is better)
Translates to: LTAPAFLNHCLACCSLCHVGPKS*PGESDL
Trigger: CAGATCAGACTCTCCAGGCAAAGATTTTGGTCCAAC...GTGACAGAGGCTACAGCAAGCCAAGCAATGGTTAAGAAAAGCTGGGGCAGTAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp GATTGTGTTGACTGTGTACAACACAAAGCCAAGGTCTGGAGAAGCTTTTCTGTAGTTACGATAGGGGTATaGGTCAGGGCTGCTCCCTCG +
Preference number: 5 (lower is better)
Translates to: DCVDCVQHKAKVWRSFSVVTIGV*VRAAPS
Trigger: CGAGGGAGCAGCCCTGACCAATACCCCTATCGTAAC...TACAGAAAAGCTTCTCCAGACCTTGGCTTTGTGTTGTACACAGTCAACACAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 90 bp GTCTCTCCCTGCTTGGTGCTCCTTAACATGGCCACGAGTTCTTCTTaGGTTCTTCCTGTAACATCTCTGCCATTTACCTCCAAAATTCTG +
Preference number: 5 (lower is better)
Translates to: VSPCLVLLNMATSSS*VLPVTSLPFTSKIL
Trigger: CAGAATTTTGGAGGTAAATGGCAGAGATGTTACAGGAAGAACCCAAGAAGAACTCGTGGCCATGTTAAGGAGCACCAAGCAGGGAGAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp AATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGTCTCACACCTCAAAGTATCACTGGGAGATTTCATaGCCTGGCGGAAGACATCTT +
Preference number: 5 (lower is better)
Translates to: NICSLSALPLYRSHTSKYHWEIS*PGGRHL
Trigger: AAGATGTCTTCCGCCAGGCAATGAAATCTCCCAGTG...ATACTTTGAGGTGTGAGACCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp CTTGTGCACGTGTTCTTGTCTTGGTCACACAGGAAGCTTCAGATGCTGTGCTGTCTCGAAGCCCCATCATaGTTGCCAAAAATGTTGAGT +
Preference number: 5 (lower is better)
Translates to: LVHVFLSWSHRKLQMLCCLEAPS*LPKMLS
Trigger: ACTCAACATTTTTGGCAACAATGATGGGGCTTCGAG...ACAGCACAGCATCTGAAGCTTCCTGTGTGACCAAGACAAGAACACGTGCACAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp GTTGCTTTGTTCTCAGTGAATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGGTTGGACCAAAATCTTaGCCTGGAGAGTCTGATCTG +
Preference number: 5 (lower is better)
Translates to: VALFSVNICSLSALPLYRVGPKS*PGESDL
Trigger: CAGATCAGACTCTCCAGGCAAAGATTTTGGTCCAAC...CCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 90 bp ATCAACAAGGCCTCTTGCCTGCTTTTCTCTCAGCTCCTGATGTTTTaGTCCAATCCTCTCTCTCTCTTCTTTCATTCTTTCCAGCTCCTC +
Preference number: 5 (lower is better)
Translates to: INKASCLLFSQLLMF*SNPLSLFFHSFQLL
Trigger: GAGGAGCTGGAAAGAATGAAAGAAGAGAGAGAGAGGATTGGAGCAAAACATCAGGAGCTGAGAGAAAAGCAGGCAAGAGGCCTTGTTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
CDS-3UTR CAA 90 bp GGAACGGAACACTTTCTGAAGAGCAGATCAAGAGATGGGCTCAAAGAGTCTGTGCTTTTGGAGTGGCTCTaGTTCGTCAAACACAGCAAT +
Preference number: 5 (lower is better)
Translates to: GTEHFLKSRSRDGLKESVLLEWL*FVKHSN
Trigger: ATTGCTGTGTTTGACGAACAAGAGCCACTCCAAAAG...CACAGACTCTTTGAGCCCATCTCTTGATCTGCTCTTCAGAAAGTGTTCCGTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp GGAACGGAACACTTTCTGAAGAGCAGATCAAGAGATGGGCTCAAAGAGTCTGTGCCATTCATAGCTTCTTaGTTTTCCACGTTCTGGGTG +
Preference number: 5 (lower is better)
Translates to: GTEHFLKSRSRDGLKESVPFIAS*FSTFWV
Trigger: CACCCAGAACGTGGAAAACAAAGAAGCTATGAATGG...CACAGACTCTTTGAGCCCATCTCTTGATCTGCTCTTCAGAAAGTGTTCCGTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp AATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGTCTCACACCTCAAAGTATAATAGTCCCTCCTGCTaGCACCTGCTGTTTTCTTCA +
Preference number: 5 (lower is better)
Translates to: NICSLSALPLYRSHTSKYNSPSC*HLLFSS
Trigger: TGAAGAAAACAGCAGGTGCAAGCAGGAGGGACTATT...ATACTTTGAGGTGTGAGACCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp CCTAGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGCTGGCGGAAGACATCTaGGGCCTGAGCAAAAGTTTT +
Preference number: 5 (lower is better)
Translates to: PSEFSQGCKYTGSYSLLLLAEDI*GLSKSF
Trigger: AAAACTTTTGCTCAGGCCCAAGATGTCTTCCGCCAG...CAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACTAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp GTTGCTTTGTTCTCAGTGAATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGATATTGTTCACGGTTTaGAGGCAGAAGCACATGGAG +
Preference number: 5 (lower is better)
Translates to: VALFSVNICSLSALPLYRILFTV*RQKHME
Trigger: CTCCATGTGCTTCTGCCTCAAAACCGTGAACAATAT...CCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp GATTGTGTTGACTGTGTACAACACAAAGCCAAGGTCTGGAGAAGCTTTTCTGTAGTTTTCTTCCTAGTCTaGGAACCCGGGGACTCTTGC +
Preference number: 5 (lower is better)
Translates to: DCVDCVQHKAKVWRSFSVVFFLV*EPGDSC
Trigger: GCAAGAGTCCCCGGGTTCCAAGACTAGGAAGAAAAC...TACAGAAAAGCTTCTCCAGACCTTGGCTTTGTGTTGTACACAGTCAACACAATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp GTTGCTTTGTTCTCAGTGAATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGACAAGGTCCATGCTCTaGGAGGCTTTAAGGTTAATC +
Preference number: 5 (lower is better)
Translates to: VALFSVNICSLSALPLYRTRSML*EALRLI
Trigger: GATTAACCTTAAAGCCTCCAAGAGCATGGACCTTGT...CCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATTCACTGAGAACAAAGCAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp GGAACGGAACACTTTCTGAAGAGCAGATCAAGAGATGGGCTCAAAGAGTCTGTGACAAGGTCCATGCTCTaGGAGGCTTTAAGGTTAATC +
Preference number: 5 (lower is better)
Translates to: GTEHFLKSRSRDGLKESVTRSML*EALRLI
Trigger: GATTAACCTTAAAGCCTCCAAGAGCATGGACCTTGT...CACAGACTCTTTGAGCCCATCTCTTGATCTGCTCTTCAGAAAGTGTTCCGTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 90 bp AGGTGCCAAACGGATATAATATACTACTATCATTTCGCCTGGAGGTaGTCAGAGCTTCTTGACAGTTCTCAAAGCCTGGTCTGGAAAGTG +
Preference number: 5 (lower is better)
Translates to: RCQTDIIYYYHFAWR*SELLDSSQSLVWKV
Trigger: CACTTTCCAGACCAGGCTTTGAGAACTGTCAAGAAGCTCTGAGCACCTCCAGGCGAAATGATAGTAGTATATTATATCCGTTTGGCACCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 90 bp GACTATAGGTGCCAAACGGATATAATATACTACTATCATTTCGCCTaGAGGTGCTCAGAGCTTCTTGACAGTTCTCAAAGCCTGGTCTGG +
Preference number: 5 (lower is better)
Translates to: DYRCQTDIIYYYHFA*RCSELLDSSQSLVW
Trigger: CCAGACCAGGCTTTGAGAACTGTCAAGAAGCTCTGAGCACCTCCAGGCGAAATGATAGTAGTATATTATATCCGTTTGGCACCTATAGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 90 bp CATGCTCTTGGAGGCTTTAAGGTTAATCAATTCGGGCTGCCTGACTaGTGTCACCGTTCTGAAGTTGACATGTTGATCTGGAAAATATCC +
Preference number: 5 (lower is better)
Translates to: HALGGFKVNQFGLPD*CHRSEVDMLIWKIS
Trigger: GGATATTTTCCAGATCAACATGTCAACTTCAGAACGGTGACACCAGTCAGGCAGCCCGAATTGATTAACCTTAAAGCCTCCAAGAGCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp AGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGGGGCTTTTGGAGTGGCTCTaGTTCGTCAAACACAGCAAT +
Preference number: 5 (lower is better)
Translates to: SEFSQGCKYTGSYSLLLGLLEWL*FVKHSN
Trigger: ATTGCTGTGTTTGACGAACAAGAGCCACTCCAAAAG...CCCCAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp CAGCTTCTTACGTCAGAATGCTTTTCCTTTAAATCAGGTGGAGACCTTAGCTGTTTTAAATGCAGCCAGTaGGGCAGCCACTTCTGTCTC +
Preference number: 5 (lower is better)
Translates to: QLLTSECFSFKSGGDLSCFKCSQ*GSHFCL
Trigger: GAGACAGAAGTGGCTGCCCAACTGGCTGCATTTAAA...ACAGCTAAGGTCTCCACCTGATTTAAAGGAAAAGCATTCTGACGTAAGAAGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp CAGCTCTCTGATCTTCCTGAAGTTGCAGGAGGATTTCCTTCACAAGGTAGGTTTCCATTCATAGCTTCTTaGTTTTCCACGTTCTGGGTG +
Preference number: 5 (lower is better)
Translates to: QLSDLPEVAGGFPSQGRFPFIAS*FSTFWV
Trigger: CACCCAGAACGTGGAAAACAAAGAAGCTATGAATGG...AAACCTACCTTGTGAAGGAAATCCTCCTGCAACTTCAGGAAGATCAGAGAGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp AATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGTCTCACACCTCAAAGTATCTCGAAGCCCCATCATaGTTGCCAAAAATGTTGAGT +
Preference number: 5 (lower is better)
Translates to: NICSLSALPLYRSHTSKYLEAPS*LPKMLS
Trigger: ACTCAACATTTTTGGCAACAATGATGGGGCTTCGAG...ATACTTTGAGGTGTGAGACCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp AATATCTGCAGCCTCTCTGCTCTGCCACTCTATAGGTCTCACACCTCAAAGTATGTTAACAGCAATCAGTaGGTCATTCATTCGGAGACG +
Preference number: 5 (lower is better)
Translates to: NICSLSALPLYRSHTSKYVNSNQ*VIHSET
Trigger: CGTCTCCGAATGAATGACCAACTGATTGCTGTTAAC...ATACTTTGAGGTGTGAGACCTATAGAGTGGCAGAGCAGAGAGGCTGCAGATATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp CAGCTCTCTGATCTTCCTGAAGTTGCAGGAGGATTTCCTTCACAAGGTAGGTTTCAGATGGCCGTGCTCTaGTGTTTTCATCTTCATACA +
Preference number: 5 (lower is better)
Translates to: QLSDLPEVAGGFPSQGRFQMAVL*CFHLHT
Trigger: TGTATGAAGATGAAAACACAAGAGCACGGCCATCTG...AAACCTACCTTGTGAAGGAAATCCTCCTGCAACTTCAGGAAGATCAGAGAGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp GGAGGGGGAAAGCAAGGACCATGGGACAATCAACCTTCTTCATCTGTTCACTGTCCATGGATGATGGATTaGATAAAAATCCCCAAGTCA +
Preference number: 5 (lower is better)
Translates to: GGGKQGPWDNQPSSSVHCPWMMD*IKIPKS
Trigger: TGACTTGGGGATTTTTATCAAATCCATCATCCATGG...ACAGTGAACAGATGAAGAAGGTTGATTGTCCCATGGTCCTTGCTTTCCCCCTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp GGAACGGAACACTTTCTGAAGAGCAGATCAAGAGATGGGCTCAAAGAGTCTGTGGCAATCAGCTTATCTTaGTCTTCAACAACATCTGCT +
Preference number: 5 (lower is better)
Translates to: GTEHFLKSRSRDGLKESVAISLS*SSTTSA
Trigger: AGCAGATGTTGTTGAAGACAAAGATAAGCTGATTGC...CACAGACTCTTTGAGCCCATCTCTTGATCTGCTCTTCAGAAAGTGTTCCGTTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp CTTACTGCCCCAGCTTTTCTTAACCATTGCTTGGCTTGCTGTAGCCTCTGTCACAGGAGTTCCACATTGTaGATTTTTACAATGCACTCA +
Preference number: 5 (lower is better)
Translates to: LTAPAFLNHCLACCSLCHRSSTL*IFTMHS
Trigger: TGAGTGCATTGTAAAAATCAACAATGTGGAACTCCT...GTGACAGAGGCTACAGCAAGCCAAGCAATGGTTAAGAAAAGCTGGGGCAGTAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp CCTAGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGATATTGTTCACGGTTTaGAGGCAGAAGCACATGGAG +
Preference number: 5 (lower is better)
Translates to: PSEFSQGCKYTGSYSLLLILFTV*RQKHME
Trigger: CTCCATGTGCTTCTGCCTCAAAACCGTGAACAATAT...CAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACTAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp CAGCTTCTTACGTCAGAATGCTTTTCCTTTAAATCAGGTGGAGACCTTAGCTGTAATCAACAAGGCCTCTaGCCTGCTTTTCTCTCAGCT +
Preference number: 5 (lower is better)
Translates to: QLLTSECFSFKSGGDLSCNQQGL*PAFLSA
Trigger: AGCTGAGAGAAAAGCAGGCAAGAGGCCTTGTTGATT...ACAGCTAAGGTCTCCACCTGATTTAAAGGAAAAGCATTCTGACGTAAGAAGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075374.10
CDS-3UTR CAA 90 bp CCTAGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGCAGATGGCCGTGCTCTaGTGTTTTCATCTTCATACA +
Preference number: 5 (lower is better)
Translates to: PSEFSQGCKYTGSYSLLLQMAVL*CFHLHT
Trigger: TGTATGAAGATGAAAACACAAGAGCACGGCCATCTG...CAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACTAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS TCA 90 bp TCCAGGAGTTCCACATTGTTGATTTTTACAATGCACTCATTCTCCTaGAATAGTCCCTCCTGCTTGCACCTGCTGTTTTCTTCAATGCCT +
Preference number: 5 (lower is better)
Translates to: SRSSTLLIFTMHSFS*NSPSCLHLLFSSMP
Trigger: AGGCATTGAAGAAAACAGCAGGTGCAAGCAGGAGGGACTATTTCAGGAGAATGAGTGCATTGTAAAAATCAACAATGTGGAACTCCTGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS TCA 90 bp TATAATATACTACTATCATTTCGCCTGGAGGTGCTCAGAGCTTCTTaGCAGTTCTCAAAGCCTGGTCTGGAAAGTGCTCCACATTCTGAA +
Preference number: 5 (lower is better)
Translates to: YNILLSFRLEVLRAS*QFSKPGLESAPHSE
Trigger: TTCAGAATGTGGAGCACTTTCCAGACCAGGCTTTGAGAACTGTCAAGAAGCTCTGAGCACCTCCAGGCGAAATGATAGTAGTATATTATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp CCTTTCTCTGTTATAGAGCTCCCAGCTACAGAGAGATACCCTAGTGAGTTTTCCGCAATCAGCTTATCTTaGTCTTCAACAACATCTGCT +
Preference number: 5 (lower is better)
Translates to: PFSVIELPATERYPSEFSAISLS*SSTTSA
Trigger: AGCAGATGTTGTTGAAGACAAAGATAAGCTGATTGC...GGAAAACTCACTAGGGTATCTCTCTGTAGCTGGGAGCTCTATAACAGAGAAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp ATTGCATTAAACTTGGACTTTCTGTTCACATGGACCCAGGAAGCACTGGGACGTTCCAGGAGTTCCACATaGTTGATTTTTACAATGCAC +
Preference number: 5 (lower is better)
Translates to: IALNLDFLFTWTQEALGRSRSST*LIFTMH
Trigger: GTGCATTGTAAAAATCAACAATGTGGAACTCCTGGA...ACGTCCCAGTGCTTCCTGGGTCCATGTGAACAGAAAGTCCAAGTTTAATGCAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp ATTGCATTAAACTTGGACTTTCTGTTCACATGGACCCAGGAAGCACTGGGACGTGTCTTTCCTTTTATCTaGTGGACTATAGGTGCCAAA +
Preference number: 5 (lower is better)
Translates to: IALNLDFLFTWTQEALGRVFPFI*WTIGAK
Trigger: TTTGGCACCTATAGTCCACAAGATAAAAGGAAAGAC...ACGTCCCAGTGCTTCCTGGGTCCATGTGAACAGAAAGTCCAAGTTTAATGCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp CCTAGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGTTTTCAGACCCAAAGTaGGACCAAAATCTTTGCCTG +
Preference number: 5 (lower is better)
Translates to: PSEFSQGCKYTGSYSLLLFSDPK*DQNLCL
Trigger: CAGGCAAAGATTTTGGTCCAACTTTGGGTCTGAAAA...CAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACTAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS TCA 90 bp ATGTTGAGTGGTCCAATGACTGATTTTTCATATTGTTCACGGTTTTaGGGCAGAAGCACATGGAGAATCACACTGGGAGATTTCATTGCC +
Preference number: 5 (lower is better)
Translates to: MLSGPMTDFSYCSRF*GRSTWRITLGDFIA
Trigger: GGCAATGAAATCTCCCAGTGTGATTCTCCATGTGCTTCTGCCTCAAAACCGTGAACAATATGAAAAATCAGTCATTGGACCACTCAACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp CCTAGTGAGTTTTCCCAAGGCTGTAAATATACTGGTAGCTATTCCCTTCTCCTGGTCTTTCCTTTTATCTaGTGGACTATAGGTGCCAAA +
Preference number: 5 (lower is better)
Translates to: PSEFSQGCKYTGSYSLLLVFPFI*WTIGAK
Trigger: TTTGGCACCTATAGTCCACAAGATAAAAGGAAAGAC...CAGGAGAAGGGAATAGCTACCAGTATATTTACAGCCTTGGGAAAACTCACTAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp GATTGTGTTGACTGTGTACAACACAAAGCCAAGGTCTGGAGAAGCTTTTCTGTATTTTCAGACCCAAAGTaGGACCAAAATCTTTGCCTG +
Preference number: 5 (lower is better)
Translates to: DCVDCVQHKAKVWRSFSVFSDPK*DQNLCL
Trigger: CAGGCAAAGATTTTGGTCCAACTTTGGGTCTGAAAA...TACAGAAAAGCTTCTCCAGACCTTGGCTTTGTGTTGTACACAGTCAACACAATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp TCCAAGGCTCCGCTTCTCTACAATGCTATTGAATTCATCAGCCTTTTGCTCCATCCATGGATGATGGATTaGATAAAAATCCCCAAGTCA +
Preference number: 5 (lower is better)
Translates to: SKAPLLYNAIEFISLLLHPWMMD*IKIPKS
Trigger: TGACTTGGGGATTTTTATCAAATCCATCATCCATGG...ATGGAGCAAAAGGCTGATGAATTCAATAGCATTGTAGAGAAGCGGAGCCTTGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp TCCAAGGCTCCGCTTCTCTACAATGCTATTGAATTCATCAGCCTTTTGCTCCATAGGAGTTCCACATTGTaGATTTTTACAATGCACTCA +
Preference number: 5 (lower is better)
Translates to: SKAPLLYNAIEFISLLLHRSSTL*IFTMHS
Trigger: TGAGTGCATTGTAAAAATCAACAATGTGGAACTCCT...ATGGAGCAAAAGGCTGATGAATTCAATAGCATTGTAGAGAAGCGGAGCCTTGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp CAGCTTCTTACGTCAGAATGCTTTTCCTTTAAATCAGGTGGAGACCTTAGCTGTTCCAGGAGTTCCACATaGTTGATTTTTACAATGCAC +
Preference number: 5 (lower is better)
Translates to: QLLTSECFSFKSGGDLSCSRSST*LIFTMH
Trigger: GTGCATTGTAAAAATCAACAATGTGGAACTCCTGGA...ACAGCTAAGGTCTCCACCTGATTTAAAGGAAAAGCATTCTGACGTAAGAAGCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS-3UTR CAA 90 bp ACAGATGACTTGGTAATCATAAAAGAACAGGAAAGACGAGAGAAAGCGAGGGTATTGTTGCCAAAAATGTaGAGTGGTCCAATGACTGAT +
Preference number: 5 (lower is better)
Translates to: TDDLVIIKEQERREKARVLLPKM*SGPMTD
Trigger: ATCAGTCATTGGACCACTCAACATTTTTGGCAACAA...TACCCTCGCTTTCTCTCGTCTTTCCTGTTCTTTTATGATTACCAAGTCATCTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 72 bp TCCTGGTCCCGGGTCTTCAGGTACCGCTGCAGCGCCTaGTGGGTGAGCTCGCGGACCCGGAGCTGGCCGTCC +
Preference number: 6 (lower is better)
Translates to: SWSRVFRYRCSA*WVSSRTRSWPS
Trigger: GGACGGCCAGCTCCGGGTCCGCGAGCTCACCCAGCAGGCGCTGCAGCGGTACCTGAAGACCCGGGACCAGGA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 72 bp GGTATTGGTCAGGGCTGCTCCCTCGGGGCCCTGCTCTaGCCATCTCCTGGTAGACCGGTACTCGCTGGTGCT +
Preference number: 6 (lower is better)
Translates to: GIGQGCSLGALL*PSPGRPVLAGA
Trigger: AGCACCAGCGAGTACCGGTCTACCAGGAGATGGGCAGAGCAGGGCCCCGAGGGAGCAGCCCTGACCAATACC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 72 bp CGTACGATTTGTCGATGGCTGCTCGGAAGCTCTCGTTaGAGCCTCGGCCCCGCACCATGTGTGGTCTGGGCC +
Preference number: 6 (lower is better)
Translates to: RTICRWLLGSSR*SLGPAPCVVWA
Trigger: GGCCCAGACCACACATGGTGCGGGGCCGAGGCTGCAACGAGAGCTTCCGAGCAGCCATCGACAAATCGTACG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 72 bp ATAGGGGTATTGGTCAGGGCTGCTCCCTCGGGGCCCTaGTCTGCCCATCTCCTGGTAGACCGGTACTCGCTG +
Preference number: 6 (lower is better)
Translates to: IGVLVRAAPSGP*SAHLLVDRYSL
Trigger: CAGCGAGTACCGGTCTACCAGGAGATGGGCAGAGCAGGGCCCCGAGGGAGCAGCCCTGACCAATACCCCTAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 72 bp CGGCCATCCAGCTCTCGGGGCAGGAAGCTCCCTTCCTaGCGGGCAATGACCAATGACACTGTCTCTCCCTGC +
Preference number: 6 (lower is better)
Translates to: RPSSSRGRKLPS*RAMTNDTVSPC
Trigger: GCAGGGAGAGACAGTGTCATTGGTCATTGCCCGCCAGGAAGGGAGCTTCCTGCCCCGAGAGCTGGATGGCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046673.11
CDS CAA 90 bp TCAGACAGACCATCCGCGTCTGCCTCTTCTGGCCCATCGTACGATTaGTCGATGGCTGCTCGGAAGCTCTCGTTGCAGCCTCGGCCCCGC +
Preference number: 6 (lower is better)
Translates to: SDRPSASASSGPSYD*SMAARKLSLQPRPR
Trigger: GCGGGGCCGAGGCTGCAACGAGAGCTTCCGAGCAGCCATCGACAAATCGTACGATGGGCCAGAAGAGGCAGACGCGGATGGTCTGTCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS TCA 72 bp GCTCTCGGGGCAGGAAGCTCCCTTCCTGGCGGGCAATaGCCAATGACACTGTCTCTCCCTGCTTGGTGCTCC +
Preference number: 6 (lower is better)
Translates to: ALGAGSSLPGGQ*PMTLSLPAWCS
Trigger: GGAGCACCAAGCAGGGAGAGACAGTGTCATTGGTCATTGCCCGCCAGGAAGGGAGCTTCCTGCCCCGAGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 72 bp TGGGCAGCCACTTCTGTCTCGAAAGCATCTGGGCTCTaGCGATCCGCAGGGTTTCCACCGGGGCTCTCAGTC +
Preference number: 6 (lower is better)
Translates to: WAATSVSKASGL*RSAGFPPGLSV
Trigger: GACTGAGAGCCCCGGTGGAAACCCTGCGGATCGGCAGAGCCCAGATGCTTTCGAGACAGAAGTGGCTGCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 72 bp TGGGATCCTGGTTACGATAGGGGTATTGGTCAGGGCTaGTCCCTCGGGGCCCTGCTCTGCCCATCTCCTGGT +
Preference number: 6 (lower is better)
Translates to: WDPGYDRGIGQG*SLGALLCPSPG
Trigger: ACCAGGAGATGGGCAGAGCAGGGCCCCGAGGGAGCAGCCCTGACCAATACCCCTATCGTAACCAGGATCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 72 bp AGCCAGTTGGGCAGCCACTTCTGTCTCGAAAGCATCTaGGCTCTGCCGATCCGCAGGGTTTCCACCGGGGCT +
Preference number: 6 (lower is better)
Translates to: SQLGSHFCLESI*ALPIRRVSTGA
Trigger: AGCCCCGGTGGAAACCCTGCGGATCGGCAGAGCCCAGATGCTTTCGAGACAGAAGTGGCTGCCCAACTGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CAA 90 bp CTGGGTAAGGATGCGTACTGCCGCTCCATCCCCTCAAAGCGGAGGTaGTGTGTGCTCCCATCTGGACCCTTTCCAGACACCCAGCGGAGG +
Preference number: 6 (lower is better)
Translates to: LGKDAYCRSIPSKRR*CVLPSGPFPDTQRR
Trigger: CCTCCGCTGGGTGTCTGGAAAGGGTCCAGATGGGAGCACACACAACCTCCGCTTTGAGGGGATGGAGCGGCAGTACGCATCCTTACCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 72 bp TGCAGTGCTTGGCTGGGCATCAGCATGGGGCCCTGGTaGTGGGTCACTGCTTCTCCTAACCAGCAGTGGAGT +
Preference number: 6 (lower is better)
Translates to: CSAWLGISMGPW*WVTASPNQQWS
Trigger: ACTCCACTGCTGGTTAGGAGAAGCAGTGACCCAGCACCAGGGCCCCATGCTGATGCCCAGCCAAGCACTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 72 bp ACTGCCGCTCCATCCCCTCAAAGCGGAGGTTGTGTGTaGTCCCATCTGGACCCTTTCCAGACACCCAGCGGA +
Preference number: 6 (lower is better)
Translates to: TAAPSPQSGGCV*SHLDPFQTPSG
Trigger: TCCGCTGGGTGTCTGGAAAGGGTCCAGATGGGAGCACACACAACCTCCGCTTTGAGGGGATGGAGCGGCAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 72 bp GGATCTGCTGAGCCTCCCCTGGGTAAGGATGCGTACTaGCGCTCCATCCCCTCAAAGCGGAGGTTGTGTGTG +
Preference number: 6 (lower is better)
Translates to: GSAEPPLGKDAY*RSIPSKRRLCV
Trigger: CACACACAACCTCCGCTTTGAGGGGATGGAGCGGCAGTACGCATCCTTACCCAGGGGAGGCTCAGCAGATCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 72 bp GCCCCATTCCAGAGCAGGATGTGGTGGCGGGGACGGTaGTACTTCATTCTCAGCCCACCCATCACTGGGAAG +
Preference number: 6 (lower is better)
Translates to: APFQSRMWWRGR*YFILSPPITGK
Trigger: CTTCCCAGTGATGGGTGGGCTGAGAATGAAGTACCACCGTCCCCGCCACCACATCCTGCTCTGGAATGGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 72 bp CAGCCTCGGCCCCGCACCATGTGTGGTCTGGGCCTGTaGAAGGGCAGATCATTCTTCCTGACTTCAGCCACA +
Preference number: 6 (lower is better)
Translates to: QPRPRTMCGLGL*KGRSFFLTSAT
Trigger: TGTGGCTGAAGTCAGGAAGAATGATCTGCCCTTCCACAGGCCCAGACCACACATGGTGCGGGGCCGAGGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 72 bp GAAGCTCTCGTTGCAGCCTCGGCCCCGCACCATGTGTaGTCTGGGCCTGTGGAAGGGCAGATCATTCTTCCT +
Preference number: 6 (lower is better)
Translates to: EALVAASAPHHV*SGPVEGQIILP
Trigger: AGGAAGAATGATCTGCCCTTCCACAGGCCCAGACCACACATGGTGCGGGGCCGAGGCTGCAACGAGAGCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 72 bp CTGTCAGGTAGTCCACGGGATCTGCTGAGCCTCCCCTaGGTAAGGATGCGTACTGCCGCTCCATCCCCTCAA +
Preference number: 6 (lower is better)
Translates to: LSGSPRDLLSLP*VRMRTAAPSPQ
Trigger: TTGAGGGGATGGAGCGGCAGTACGCATCCTTACCCAGGGGAGGCTCAGCAGATCCCGTGGACTACCTGACAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CAA 72 bp ATTCTTCTGCCTGGGATCCTGGTTACGATAGGGGTATaGGTCAGGGCTGCTCCCTCGGGGCCCTGCTCTGCC +
Preference number: 6 (lower is better)
Translates to: ILLPGILVTIGV*VRAAPSGPCSA
Trigger: GGCAGAGCAGGGCCCCGAGGGAGCAGCCCTGACCAATACCCCTATCGTAACCAGGATCCCAGGCAGAAGAAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CAA 90 bp AGTCATGGGATTCTTCTGCCTGGGATCCTGGTTACGATAGGGGTATaGGTCAGGGCTGCTCCCTCGGGGCCCTGCTCTGCCCATCTCCTG +
Preference number: 6 (lower is better)
Translates to: SHGILLPGILVTIGV*VRAAPSGPCSAHLL
Trigger: CAGGAGATGGGCAGAGCAGGGCCCCGAGGGAGCAGCCCTGACCAATACCCCTATCGTAACCAGGATCCCAGGCAGAAGAATCCCATGACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 72 bp CAACAGGTTTCAAACTCTGGCCACTCAGGCTTGCAGTaGTTGGCTGGGCATCAGCATGGGGCCCTGGTGCTG +
Preference number: 6 (lower is better)
Translates to: QQVSNSGHSGLQ*LAGHQHGALVL
Trigger: CAGCACCAGGGCCCCATGCTGATGCCCAGCCAAGCACTGCAAGCCTGAGTGGCCAGAGTTTGAAACCTGTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 72 bp CATCCCCTCAAAGCGGAGGTTGTGTGTGCTCCCATCTaGACCCTTTCCAGACACCCAGCGGAGGTCATGGTC +
Preference number: 6 (lower is better)
Translates to: HPLKAEVVCAPI*TLSRHPAEVMV
Trigger: GACCATGACCTCCGCTGGGTGTCTGGAAAGGGTCCAGATGGGAGCACACACAACCTCCGCTTTGAGGGGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 72 bp TCTCCTTTCAGCTCTCGGGGCAGGAAGCTCCCTTCCTaGCGGGCAATGACCAATGACACTGTCTCTCCCTGC +
Preference number: 6 (lower is better)
Translates to: SPFSSRGRKLPS*RAMTNDTVSPC
Trigger: GCAGGGAGAGACAGTGTCATTGGTCATTGCCCGCCAGGAAGGGAGCTTCCTGCCCCGAGAGCTGAAAGGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CAA 72 bp GATGCGTACTGCCGCTCCATCCCCTCAAAGCGGAGGTaGTGTGTGCTCCCATCTGGACCCTTTCCAGACACC +
Preference number: 6 (lower is better)
Translates to: DAYCRSIPSKRR*CVLPSGPFPDT
Trigger: GGTGTCTGGAAAGGGTCCAGATGGGAGCACACACAACCTCCGCTTTGAGGGGATGGAGCGGCAGTACGCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CAA 90 bp CCAGAACAACAGGTTTCAAACTCTGGCCACTCAGGCTTGCAGTGCTaGGCTGGGCATCAGCATGGGGCCCTGGTGCTGGGTCACTGCTTC +
Preference number: 6 (lower is better)
Translates to: PEQQVSNSGHSGLQC*AGHQHGALVLGHCF
Trigger: GAAGCAGTGACCCAGCACCAGGGCCCCATGCTGATGCCCAGCCAAGCACTGCAAGCCTGAGTGGCCAGAGTTTGAAACCTGTTGTTCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 72 bp CTTTCCAGCTCCTCTTCCTCCGGGTGGCCGGACTTCTaGGCACCTTTCTGCTCAGCCTTTCCGACCTTATCA +
Preference number: 6 (lower is better)
Translates to: LSSSSSSGWPDF*APFCSAFPTLS
Trigger: TGATAAGGTCGGAAAGGCTGAGCAGAAAGGTGCGCAGAAGTCCGGCCACCCGGAGGAAGAGGAGCTGGAAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 72 bp GAAATCTTCAAGGCCCCATTCCAGAGCAGGATGTGGTaGCGGGGACGGTGGTACTTCATTCTCAGCCCACCC +
Preference number: 6 (lower is better)
Translates to: EIFKAPFQSRMW*RGRWYFILSPP
Trigger: GGGTGGGCTGAGAATGAAGTACCACCGTCCCCGCCACCACATCCTGCTCTGGAATGGGGCCTTGAAGATTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS TCA 72 bp CTGAGGGGCAGACTCACAATTCAGAGCTGTGTGGCCTaGGCGAGAGCTCTTATCAGACAGACCATCCGCGTC +
Preference number: 6 (lower is better)
Translates to: LRGRLTIQSCVA*ARALIRQTIRV
Trigger: GACGCGGATGGTCTGTCTGATAAGAGCTCTCGCTCAGGCCACACAGCTCTGAATTGTGAGTCTGCCCCTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 72 bp TACTGCCTTCAGACCTGGTTTCCCACGGGCAGGAGGTaGTGCCTTTGTTCTCGAAGCCCCATCATTGTTGCC +
Preference number: 6 (lower is better)
Translates to: YCLQTWFPTGRR*CLCSRSPIIVA
Trigger: GGCAACAATGATGGGGCTTCGAGAACAAAGGCAGCACCTCCTGCCCGTGGGAAACCAGGTCTGAAGGCAGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 72 bp TTTGCTGCGGGGAGGCTGGCTCTTCTCCTTCAGGGCTaGTCGCTCTTGTTAGATGTACTGCCTTCAGACCTG +
Preference number: 6 (lower is better)
Translates to: FAAGRLALLLQG*SLLLDVLPSDL
Trigger: CAGGTCTGAAGGCAGTACATCTAACAAGAGCGAGCAGCCCTGAAGGAGAAGAGCCAGCCTCCCCGCAGCAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 72 bp TGGAGACAGTGGACGCCCATCCCGAGGGTAAGCAAGTaGTCCAGCTCGAAGGGGAGATGGAGATCTAAAGAC +
Preference number: 6 (lower is better)
Translates to: WRQWTPIPRVSK*SSSKGRWRSKD
Trigger: GTCTTTAGATCTCCATCTCCCCTTCGAGCTGGACCACTTGCTTACCCTCGGGATGGGCGTCCACTGTCTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
CDS TCA 72 bp TTGCCTGGAGAGTCTGATCTGCGATCCGCCAGCGACTaGACTTTGCCTTCATCTGGCACAAGGTCCATGCTC +
Preference number: 6 (lower is better)
Translates to: LPGESDLRSASD*TLPSSGTRSML
Trigger: GAGCATGGACCTTGTGCCAGATGAAGGCAAAGTTCAGTCGCTGGCGGATCGCAGATCAGACTCTCCAGGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 72 bp TGCCTTCAGACCTGGTTTCCCACGGGCAGGAGGTGCTaGCTTTGTTCTCGAAGCCCCATCATTGTTGCCAAA +
Preference number: 6 (lower is better)
Translates to: CLQTWFPTGRRC*LCSRSPIIVAK
Trigger: TTTGGCAACAATGATGGGGCTTCGAGAACAAAGGCAGCACCTCCTGCCCGTGGGAAACCAGGTCTGAAGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 72 bp GTCTCTCAGGTCTCCTCAGAATCACCAACTGGATCATaGCCCGGATGTTTCCCTCCATGGACATGGATCGCC +
Preference number: 6 (lower is better)
Translates to: VSQVSSESPTGS*PGCFPPWTWIA
Trigger: GGCGATCCATGTCCATGGAGGGAAACATCCGGGGCATGATCCAGTTGGTGATTCTGAGGAGACCTGAGAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 72 bp CGATCCGCAGGGTTTCCACCGGGGCTCTCAGTCTTTTaGAGTGGCTCTTGTTCGTCAAACACAGCAATCAGC +
Preference number: 6 (lower is better)
Translates to: RSAGFPPGLSVF*SGSCSSNTAIS
Trigger: GCTGATTGCTGTGTTTGACGAACAAGAGCCACTCCAAAAGACTGAGAGCCCCGGTGGAAACCCTGCGGATCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 72 bp ACTGAAATCTTCAAGGCCCCATTCCAGAGCAGGATGTaGTGGCGGGGACGGTGGTACTTCATTCTCAGCCCA +
Preference number: 6 (lower is better)
Translates to: TEIFKAPFQSRM*WRGRWYFILSP
Trigger: TGGGCTGAGAATGAAGTACCACCGTCCCCGCCACCACATCCTGCTCTGGAATGGGGCCTTGAAGATTTCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 72 bp GCTCTTATCAGACAGACCATCCGCGTCTGCCTCTTCTaGCCCATCGTACGATTTGTCGATGGCTGCTCGGAA +
Preference number: 6 (lower is better)
Translates to: ALIRQTIRVCLF*PIVRFVDGCSE
Trigger: TTCCGAGCAGCCATCGACAAATCGTACGATGGGCCAGAAGAGGCAGACGCGGATGGTCTGTCTGATAAGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CAA 72 bp CCGATCCGCAGGGTTTCCACCGGGGCTCTCAGTCTTTaGGAGTGGCTCTTGTTCGTCAAACACAGCAATCAG +
Preference number: 6 (lower is better)
Translates to: PIRRVSTGALSL*EWLLFVKHSNQ
Trigger: CTGATTGCTGTGTTTGACGAACAAGAGCCACTCCAAAAGACTGAGAGCCCCGGTGGAAACCCTGCGGATCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CAA 90 bp AGGGGTTACTACGATTTCCCCACCGACAGGTTTAAATGCAGCCAGTaGGGCAGCCACTTCTGTCTCGAAAGCATCTGGGCTCTGCCGATC +
Preference number: 6 (lower is better)
Translates to: RGYYDFPTDRFKCSQ*GSHFCLESIWALPI
Trigger: GATCGGCAGAGCCCAGATGCTTTCGAGACAGAAGTGGCTGCCCAACTGGCTGCATTTAAACCTGTCGGTGGGGAAATCGTAGTAACCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CAA 90 bp CTCCCTTCCTGGCGGGCAATGACCAATGACACTGTCTCTCCCTGCTaGGTGCTCCTTAACATGGCCACGAGTTCTTCTTGGGTTCTTCCT +
Preference number: 6 (lower is better)
Translates to: LPSWRAMTNDTVSPC*VLLNMATSSSWVLP
Trigger: AGGAAGAACCCAAGAAGAACTCGTGGCCATGTTAAGGAGCACCAAGCAGGGAGAGACAGTGTCATTGGTCATTGCCCGCCAGGAAGGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 72 bp CCATCTGGACCCTTTCCAGACACCCAGCGGAGGTCATaGTCAGATGGCCGTGCTCTTGTGTTTTCATCTTCA +
Preference number: 6 (lower is better)
Translates to: PSGPFPDTQRRS*SDGRALVFSSS
Trigger: TGAAGATGAAAACACAAGAGCACGGCCATCTGACCATGACCTCCGCTGGGTGTCTGGAAAGGGTCCAGATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 72 bp TCCGAAGCTTCTGGATGCGGTCCGTGGTTCCAGCCATaGGTCGGCCACTCTCTCTCTCTTCTTTCATTCTTT +
Preference number: 6 (lower is better)
Translates to: SEASGCGPWFQP*VGHSLSLLSFF
Trigger: AAAGAATGAAAGAAGAGAGAGAGAGTGGCCGACCCATGGCTGGAACCACGGACCGCATCCAGAAGCTTCGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094906.4
CDS CAA 72 bp TGGCGGGCAATGACCAATGACACTGTCTCTCCCTGCTaGGTGCTCCTTAACATGGCCACGAGTTCTTCTTGG +
Preference number: 6 (lower is better)
Translates to: WRAMTNDTVSPC*VLLNMATSSSW
Trigger: CCAAGAAGAACTCGTGGCCATGTTAAGGAGCACCAAGCAGGGAGAGACAGTGTCATTGGTCATTGCCCGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CAA 90 bp TGGGCTCTGCCGATCCGCAGGGTTTCCACCGGGGCTCTCAGTCTTTaGGAGTGGCTCTTGTTCGTCAAACACAGCAATCAGCTTATCTTT +
Preference number: 6 (lower is better)
Translates to: WALPIRRVSTGALSL*EWLLFVKHSNQLIF
Trigger: AAAGATAAGCTGATTGCTGTGTTTGACGAACAAGAGCCACTCCAAAAGACTGAGAGCCCCGGTGGAAACCCTGCGGATCGGCAGAGCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS TCA 72 bp GTTCTCAAAGCCTGGTCTGGAAAGTGCTCCACATTCTaGAAGCTCCTCCAGTGGTCTCTCAGGTCTCCTCAG +
Preference number: 6 (lower is better)
Translates to: VLKAWSGKCSTF*KLLQWSLRSPQ
Trigger: CTGAGGAGACCTGAGAGACCACTGGAGGAGCTTTCAGAATGTGGAGCACTTTCCAGACCAGGCTTTGAGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 72 bp AGGGGTTACTACGATTTCCCCACCGACAGGTTTAAATaGAGCCAGTTGGGCAGCCACTTCTGTCTCGAAAGC +
Preference number: 6 (lower is better)
Translates to: RGYYDFPTDRFK*SQLGSHFCLES
Trigger: GCTTTCGAGACAGAAGTGGCTGCCCAACTGGCTGCATTTAAACCTGTCGGTGGGGAAATCGTAGTAACCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 72 bp TCTTCCTCCGGGTGGCCGGACTTCTGCGCACCTTTCTaGTCAGCCTTTCCGACCTTATCATCTTTCTTCTTT +
Preference number: 6 (lower is better)
Translates to: SSSGWPDFCAPF*SAFPTLSSFFF
Trigger: AAAGAAGAAAGATGATAAGGTCGGAAAGGCTGAGCAGAAAGGTGCGCAGAAGTCCGGCCACCCGGAGGAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 72 bp TTCGTCATCGTCCATATCGTGCACTGGTCCAGTCACTaGCGTGGCATAATCAACAAGGCCTCTTGCCTGCTT +
Preference number: 6 (lower is better)
Translates to: FVIVHIVHWSSH*RGIINKASCLL
Trigger: AAGCAGGCAAGAGGCCTTGTTGATTATGCCACGGCAGTGACTGGACCAGTGCACGATATGGACGATGACGAA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
CDS CCA 72 bp CATCGTCCATATCGTGCACTGGTCCAGTCACTGCCGTaGCATAATCAACAAGGCCTCTTGCCTGCTTTTCTC +
Preference number: 6 (lower is better)
Translates to: HRPYRALVQSLP*HNQQGLLPAFL
Trigger: GAGAAAAGCAGGCAAGAGGCCTTGTTGATTATGCCACGGCAGTGACTGGACCAGTGCACGATATGGACGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
CDS CCA 72 bp ATTGGGGTCCATTTCGTCATCGTCCATATCGTGCACTaGTCCAGTCACTGCCGTGGCATAATCAACAAGGCC +
Preference number: 6 (lower is better)
Translates to: IGVHFVIVHIVH*SSHCRGIINKA
Trigger: GGCCTTGTTGATTATGCCACGGCAGTGACTGGACCAGTGCACGATATGGACGATGACGAAATGGACCCCAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
CDS CAA 72 bp TCAGACCTGGTTTCCCACGGGCAGGAGGTGCTGCCTTaGTTCTCGAAGCCCCATCATTGTTGCCAAAAATGT +
Preference number: 6 (lower is better)
Translates to: SDLVSHGQEVLP*FSKPHHCCQKC
Trigger: ACATTTTTGGCAACAATGATGGGGCTTCGAGAACAAAGGCAGCACCTCCTGCCCGTGGGAAACCAGGTCTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CAA 90 bp CGTGCACTGGTCCAGTCACTGCCGTGGCATAATCAACAAGGCCTCTaGCCTGCTTTTCTCTCAGCTCCTGATGTTTTGCTCCAATCCTCT +
Preference number: 6 (lower is better)
Translates to: RALVQSLPWHNQQGL*PAFLSAPDVLLQSS
Trigger: AGAGGATTGGAGCAAAACATCAGGAGCTGAGAGAAAAGCAGGCAAGAGGCCTTGTTGATTATGCCACGGCAGTGACTGGACCAGTGCACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
CDS TCA 72 bp CGTCATATCACTCAGCTCATCCTTCGGTCTGTGCAGTaGAAGCAGCCCTGCCTGTTCACCATTCATAGCTTC +
Preference number: 6 (lower is better)
Translates to: RHITQLILRSVQ*KQPCLFTIHSF
Trigger: GAAGCTATGAATGGTGAACAGGCAGGGCTGCTTTCACTGCACAGACCGAAGGATGAGCTGAGTGATATGACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS TCA 72 bp ACCCAAAGTTGGACCAAAATCTTTGCCTGGAGAGTCTaGTCTGCGATCCGCCAGCGACTGAACTTTGCCTTC +
Preference number: 6 (lower is better)
Translates to: TQSWTKIFAWRV*SAIRQRLNFAF
Trigger: GAAGGCAAAGTTCAGTCGCTGGCGGATCGCAGATCAGACTCTCCAGGCAAAGATTTTGGTCCAACTTTGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 72 bp TCCAGACACCCAGCGGAGGTCATGGTCAGATGGCCGTaGTCTTGTGTTTTCATCTTCATACAAAAGGAACCC +
Preference number: 6 (lower is better)
Translates to: SRHPAEVMVRWP*SCVFIFIQKEP
Trigger: GGGTTCCTTTTGTATGAAGATGAAAACACAAGAGCACGGCCATCTGACCATGACCTCCGCTGGGTGTCTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 72 bp TTTCCCAGAAGAGTTTCCCCGTTAACAGCAATCAGTTaGTCATTCATTCGGAGACGGCCATCCAGCTCTCGG +
Preference number: 6 (lower is better)
Translates to: FPRRVSPLTAIS*SFIRRRPSSSR
Trigger: CCGAGAGCTGGATGGCCGTCTCCGAATGAATGACCAACTGATTGCTGTTAACGGGGAAACTCTTCTGGGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046673.11
CDS CAA 72 bp CACACTGGGAGATTTCATTGCCTGGCGGAAGACATCTaGGGCCTGAGCAAAAGTTTTGTCCAGGAGTTCCAC +
Preference number: 6 (lower is better)
Translates to: HTGRFHCLAEDI*GLSKSFVQEFH
Trigger: GTGGAACTCCTGGACAAAACTTTTGCTCAGGCCCAAGATGTCTTCCGCCAGGCAATGAAATCTCCCAGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CAA 72 bp GCAGAAGCACATGGAGAATCACACTGGGAGATTTCATaGCCTGGCGGAAGACATCTTGGGCCTGAGCAAAAG +
Preference number: 6 (lower is better)
Translates to: AEAHGESHWEIS*PGGRHLGPEQK
Trigger: CTTTTGCTCAGGCCCAAGATGTCTTCCGCCAGGCAATGAAATCTCCCAGTGTGATTCTCCATGTGCTTCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CAA 72 bp CTGGACTTTTTCAGACCCAAAGTTGGACCAAAATCTTaGCCTGGAGAGTCTGATCTGCGATCCGCCAGCGAC +
Preference number: 6 (lower is better)
Translates to: LDFFRPKVGPKS*PGESDLRSASD
Trigger: GTCGCTGGCGGATCGCAGATCAGACTCTCCAGGCAAAGATTTTGGTCCAACTTTGGGTCTGAAAAAGTCCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS TCA 72 bp CTACTATCATTTCGCCTGGAGGTGCTCAGAGCTTCTTaGCAGTTCTCAAAGCCTGGTCTGGAAAGTGCTCCA +
Preference number: 6 (lower is better)
Translates to: LLSFRLEVLRAS*QFSKPGLESAP
Trigger: TGGAGCACTTTCCAGACCAGGCTTTGAGAACTGTCAAGAAGCTCTGAGCACCTCCAGGCGAAATGATAGTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS TCA 72 bp AGCTCGAAGGGGAGATGGAGATCTAAAGACATTTGCTaGTGCACATGGTTCCCGAAAGTGGTTCACTCTGGC +
Preference number: 6 (lower is better)
Translates to: SSKGRWRSKDIC*CTWFPKVVHSG
Trigger: GCCAGAGTGAACCACTTTCGGGAACCATGTGCATCAGCAAATGTCTTTAGATCTCCATCTCCCCTTCGAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
CDS GCA 72 bp TGGACTTTTTCAGACCCAAAGTTGGACCAAAATCTTTaGCTGGAGAGTCTGATCTGCGATCCGCCAGCGACT +
Preference number: 6 (lower is better)
Translates to: WTFSDPKLDQNL*LESLICDPPAT
Trigger: AGTCGCTGGCGGATCGCAGATCAGACTCTCCAGGCAAAGATTTTGGTCCAACTTTGGGTCTGAAAAAGTCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 72 bp TGCTCAGAGCTTCTTGACAGTTCTCAAAGCCTGGTCTaGAAAGTGCTCCACATTCTGAAAGCTCCTCCAGTG +
Preference number: 6 (lower is better)
Translates to: CSELLDSSQSLV*KVLHILKAPPV
Trigger: CACTGGAGGAGCTTTCAGAATGTGGAGCACTTTCCAGACCAGGCTTTGAGAACTGTCAAGAAGCTCTGAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 72 bp CACATGGTTCCCGAAAGTGGTTCACTCTGGCATAATTaGGGTCCATTTCGTCATCGTCCATATCGTGCACTG +
Preference number: 6 (lower is better)
Translates to: HMVPESGSLWHN*GPFRHRPYRAL
Trigger: CAGTGCACGATATGGACGATGACGAAATGGACCCCAATTATGCCAGAGTGAACCACTTTCGGGAACCATGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
CDS CAA 72 bp ACTACTATCATTTCGCCTGGAGGTGCTCAGAGCTTCTaGACAGTTCTCAAAGCCTGGTCTGGAAAGTGCTCC +
Preference number: 6 (lower is better)
Translates to: TTIISPGGAQSF*TVLKAWSGKCS
Trigger: GGAGCACTTTCCAGACCAGGCTTTGAGAACTGTCAAGAAGCTCTGAGCACCTCCAGGCGAAATGATAGTAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CAA 90 bp ATCCGCAGGGTTTCCACCGGGGCTCTCAGTCTTTTGGAGTGGCTCTaGTTCGTCAAACACAGCAATCAGCTTATCTTTGTCTTCAACAAC +
Preference number: 6 (lower is better)
Translates to: IRRVSTGALSLLEWL*FVKHSNQLIFVFNN
Trigger: GTTGTTGAAGACAAAGATAAGCTGATTGCTGTGTTTGACGAACAAGAGCCACTCCAAAAGACTGAGAGCCCCGGTGGAAACCCTGCGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CAA 90 bp CAATTCGGGCTGCCTGACTGGTGTCACCGTTCTGAAGTTGACATGTaGATCTGGAAAATATCCTGTGGAATCCACTCCAGAGCTGTGACT +
Preference number: 6 (lower is better)
Translates to: QFGLPDWCHRSEVDM*IWKISCGIHSRAVT
Trigger: AGTCACAGCTCTGGAGTGGATTCCACAGGATATTTTCCAGATCAACATGTCAACTTCAGAACGGTGACACCAGTCAGGCAGCCCGAATTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS TCA 72 bp GAAAATATCCTGTGGAATCCACTCCAGAGCTGTGACTaGAATCTTCAAGGCCCCATTCCAGAGCAGGATGTG +
Preference number: 6 (lower is better)
Translates to: ENILWNPLQSCD*NLQGPIPEQDV
Trigger: CACATCCTGCTCTGGAATGGGGCCTTGAAGATTTCAGTCACAGCTCTGGAGTGGATTCCACAGGATATTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS TCA 72 bp TCTGGAAAATATCCTGTGGAATCCACTCCAGAGCTGTaGCTGAAATCTTCAAGGCCCCATTCCAGAGCAGGA +
Preference number: 6 (lower is better)
Translates to: SGKYPVESTPEL*LKSSRPHSRAG
Trigger: TCCTGCTCTGGAATGGGGCCTTGAAGATTTCAGTCACAGCTCTGGAGTGGATTCCACAGGATATTTTCCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CAA 90 bp CTGTGCAGTGAAAGCAGCCCTGCCTGTTCACCATTCATAGCTTCTTaGTTTTCCACGTTCTGGGTGGAATCCAGAACAACAGGTTTCAAA +
Preference number: 6 (lower is better)
Translates to: LCSESSPACSPFIAS*FSTFWVESRTTGFK
Trigger: TTTGAAACCTGTTGTTCTGGATTCCACCCAGAACGTGGAAAACAAAGAAGCTATGAATGGTGAACAGGCAGGGCTGCTTTCACTGCACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CAA 90 bp CGGAGACGGCCATCCTTGAAAGCAGCACCTCCATGGATGATGGATTaGATAAAAATCCCCAAGTCAGTTCCAGTTTCTCGAGACTTATTC +
Preference number: 6 (lower is better)
Translates to: RRRPSLKAAPPWMMD*IKIPKSVPVSRDLF
Trigger: GAATAAGTCTCGAGAAACTGGAACTGACTTGGGGATTTTTATCAAATCCATCATCCATGGAGGTGCTGCTTTCAAGGATGGCCGTCTCCG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS TCA 72 bp TGCCTGACTGGTGTCACCGTTCTGAAGTTGACATGTTaGTCTGGAAAATATCCTGTGGAATCCACTCCAGAG +
Preference number: 6 (lower is better)
Translates to: CLTGVTVLKLTC*SGKYPVESTPE
Trigger: CTCTGGAGTGGATTCCACAGGATATTTTCCAGATCAACATGTCAACTTCAGAACGGTGACACCAGTCAGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS GCA 72 bp ATGCTCTTGGAGGCTTTAAGGTTAATCAATTCGGGCTaGCTGACTGGTGTCACCGTTCTGAAGTTGACATGT +
Preference number: 6 (lower is better)
Translates to: MLLEALRLINSG*LTGVTVLKLTC
Trigger: ACATGTCAACTTCAGAACGGTGACACCAGTCAGGCAGCCCGAATTGATTAACCTTAAAGCCTCCAAGAGCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 72 bp GACTGGTGTCACCGTTCTGAAGTTGACATGTTGATCTaGAAAATATCCTGTGGAATCCACTCCAGAGCTGTG +
Preference number: 6 (lower is better)
Translates to: DWCHRSEVDMLI*KISCGIHSRAV
Trigger: CACAGCTCTGGAGTGGATTCCACAGGATATTTTCCAGATCAACATGTCAACTTCAGAACGGTGACACCAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 72 bp TTGCTGATGCACATGGTTCCCGAAAGTGGTTCACTCTaGCATAATTGGGGTCCATTTCGTCATCGTCCATAT +
Preference number: 6 (lower is better)
Translates to: LLMHMVPESGSL*HNWGPFRHRPY
Trigger: ATATGGACGATGACGAAATGGACCCCAATTATGCCAGAGTGAACCACTTTCGGGAACCATGTGCATCAGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
CDS CCA 72 bp TTTCCCAGAAGAGTTTCCCCGTTAACAGCAATCAGTTaGTCATTCATTCGGAGACGGCCATCCTTGAAAGCA +
Preference number: 6 (lower is better)
Translates to: FPRRVSPLTAIS*SFIRRRPSLKA
Trigger: TGCTTTCAAGGATGGCCGTCTCCGAATGAATGACCAACTGATTGCTGTTAACGGGGAAACTCTTCTGGGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CAA 72 bp GAAAGCAGCCCTGCCTGTTCACCATTCATAGCTTCTTaGTTTTCCACGTTCTGGGTGGAATCCAGAACAACA +
Preference number: 6 (lower is better)
Translates to: ESSPACSPFIAS*FSTFWVESRTT
Trigger: TGTTGTTCTGGATTCCACCCAGAACGTGGAAAACAAAGAAGCTATGAATGGTGAACAGGCAGGGCTGCTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CAA 72 bp CTGCCTGACTGGTGTCACCGTTCTGAAGTTGACATGTaGATCTGGAAAATATCCTGTGGAATCCACTCCAGA +
Preference number: 6 (lower is better)
Translates to: LPDWCHRSEVDM*IWKISCGIHSR
Trigger: TCTGGAGTGGATTCCACAGGATATTTTCCAGATCAACATGTCAACTTCAGAACGGTGACACCAGTCAGGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CAA 90 bp AATCAACAAGGCCTCTTGCCTGCTTTTCTCTCAGCTCCTGATGTTTaGCTCCAATCCTCTCTCTCTCTTCTTTCATTCTTTCCAGCTCCT +
Preference number: 6 (lower is better)
Translates to: NQQGLLPAFLSAPDV*LQSSLSLLSFFPAP
Trigger: AGGAGCTGGAAAGAATGAAAGAAGAGAGAGAGAGGATTGGAGCAAAACATCAGGAGCTGAGAGAAAAGCAGGCAAGAGGCCTTGTTGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
CDS CAA 72 bp GGAGGTGCTGCCTTTGTTCTCGAAGCCCCATCATTGTaGCCAAAAATGTTGAGTGGTCCAATGACTGATTTT +
Preference number: 6 (lower is better)
Translates to: GGAAFVLEAPSL*PKMLSGPMTDF
Trigger: AAAATCAGTCATTGGACCACTCAACATTTTTGGCAACAATGATGGGGCTTCGAGAACAAAGGCAGCACCTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CAA 72 bp GGCCTCTTGCCTGCTTTTCTCTCAGCTCCTGATGTTTaGCTCCAATCCTCTCTCTCTCTTCTTTCATTCTTT +
Preference number: 6 (lower is better)
Translates to: GLLPAFLSAPDV*LQSSLSLLSFF
Trigger: AAAGAATGAAAGAAGAGAGAGAGAGGATTGGAGCAAAACATCAGGAGCTGAGAGAAAAGCAGGCAAGAGGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
CDS GCA 72 bp ACGGATATAATATACTACTATCATTTCGCCTGGAGGTaGTCAGAGCTTCTTGACAGTTCTCAAAGCCTGGTC +
Preference number: 6 (lower is better)
Translates to: TDIIYYYHFAWR*SELLDSSQSLV
Trigger: GACCAGGCTTTGAGAACTGTCAAGAAGCTCTGAGCACCTCCAGGCGAAATGATAGTAGTATATTATATCCGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CAA 72 bp CCATCCTTGAAAGCAGCACCTCCATGGATGATGGATTaGATAAAAATCCCCAAGTCAGTTCCAGTTTCTCGA +
Preference number: 6 (lower is better)
Translates to: PSLKAAPPWMMD*IKIPKSVPVSR
Trigger: TCGAGAAACTGGAACTGACTTGGGGATTTTTATCAAATCCATCATCCATGGAGGTGCTGCTTTCAAGGATGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS CCA 72 bp TGCCAAACGGATATAATATACTACTATCATTTCGCCTaGAGGTGCTCAGAGCTTCTTGACAGTTCTCAAAGC +
Preference number: 6 (lower is better)
Translates to: CQTDIIYYYHFA*RCSELLDSSQS
Trigger: GCTTTGAGAACTGTCAAGAAGCTCTGAGCACCTCCAGGCGAAATGATAGTAGTATATTATATCCGTTTGGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4
CDS TCA 72 bp TCCACATTGTTGATTTTTACAATGCACTCATTCTCCTaGAATAGTCCCTCCTGCTTGCACCTGCTGTTTTCT +
Preference number: 6 (lower is better)
Translates to: STLLIFTMHSFS*NSPSCLHLLFS
Trigger: AGAAAACAGCAGGTGCAAGCAGGAGGGACTATTTCAGGAGAATGAGTGCATTGTAAAAATCAACAATGTGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046673.11
ENSMUST00000075374.10
ENSMUST00000094906.4