Pregenerated sensors for PAPOLB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074817Ensembl transcript IDs: ENSMUST00000099400.3
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCCCACAGAAACCAAATACTTAGTAACTATGGTTTTGATGTCAAATaGATGCCCTCGAAGATTACATTCCATCTTAGAGGGTGTAGACGC | + |
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Preference number: 1 (lower is better) Translates to: SHRNQILSNYGFDVK*MPSKITFHLRGCRR Trigger: GCGTCTACACCCTCTAAGATGGAATGTAATCTTCGAGGGCATTCATTTGACATCAAAACCATAGTTACTAAGTATTTGGTTTCTGTGGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| 3UTR GCA 90 bp | ACAGAAACCAAATACTTAGTAACTATGGTTTTGATGTCAAATGAATaGCCTCGAAGATTACATTCCATCTTAGAGGGTGTAGACGCCTCC | + |
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Preference number: 1 (lower is better) Translates to: TETKYLVTMVLMSNE*PRRLHSILEGVDAS Trigger: GGAGGCGTCTACACCCTCTAAGATGGAATGTAATCTTCGAGGGCATTCATTTGACATCAAAACCATAGTTACTAAGTATTTGGTTTCTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| 3UTR CCA 90 bp | TGCCCTCGAAGATTACATTCCATCTTAGAGGGTGTAGACGCCTCCTaGGAACTGAGATACATATTTCATACTTTCTCAAGTATATTACTA | + |
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Preference number: 1 (lower is better) Translates to: CPRRLHSILEGVDAS*ELRYIFHTFSSILL Trigger: TAGTAATATACTTGAGAAAGTATGAAATATGTATCTCAGTTCCCAGGAGGCGTCTACACCCTCTAAGATGGAATGTAATCTTCGAGGGCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| 3UTR CAA 90 bp | AGACTAAATTTGTGCCTGGCTGTCTCCAGCAGACACCATGGCTGTTaGGAATGCAGGAGCCATGCACTTTCTTATGCTGGTGGAAGGGCA | + |
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Preference number: 2 (lower is better) Translates to: RLNLCLAVSSRHHGC*ECRSHALSYAGGRA Trigger: TGCCCTTCCACCAGCATAAGAAAGTGCATGGCTCCTGCATTCCAAACAGCCATGGTGTCTGCTGGAGACAGCCAGGCACAAATTTAGTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| 3UTR-3UTR CCA 90 bp | AGACAGACCTGGATGCTTGGAAGAGTTGTTAAGTTTGCTGTATCTGGATTAAGAAAGCTGCTGTCTGAGTaGTGTCTAAGCGGGACTCAT | + |
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Preference number: 2 (lower is better) Translates to: RQTWMLGRVVKFAVSGLRKLLSE*CLSGTH Trigger: ATGAGTCCCGCTTAGACACCACTCAGACAGCAGCTT...TCTTAATCCAGATACAGCAAACTTAACAACTCTTCCAAGCATCCAGGTCTGTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| 3UTR-3UTR TCA 90 bp | AGACAGACCTGGATGCTTGGAAGAGTTGTTAAGTTTGCTGTATCTGGATTAAGAAGTCAAGGACAGAAATaGATACAGCTAGAGGGGATT | + |
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Preference number: 2 (lower is better) Translates to: RQTWMLGRVVKFAVSGLRSQGQK*IQLEGI Trigger: AATCCCCTCTAGCTGTATTCATTTCTGTCCTTGACT...TCTTAATCCAGATACAGCAAACTTAACAACTCTTCCAAGCATCCAGGTCTGTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| 3UTR-3UTR GCA 90 bp | GAGAGACAGACCTGGATGCTTGGAAGAGTTGTTAAGTTTGCTGTATCTGGATTAGCGACAAGTTCAATTTaGAAGAATTTGTGTAAGGGC | + |
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Preference number: 2 (lower is better) Translates to: ERQTWMLGRVVKFAVSGLATSSI*KNLCKG Trigger: GCCCTTACACAAATTCTTGCAAATTGAACTTGTCGC...TAATCCAGATACAGCAAACTTAACAACTCTTCCAAGCATCCAGGTCTGTCTCTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| 3UTR-3UTR CCA 90 bp | TTCTTGATCTTCTCCCACAGAAACCAAATACTTAGTAACTATGGTTTTGATGTCCGGGACTCATCTATCTaGTTCTTCCCTTCTGTTGGG | + |
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Preference number: 2 (lower is better) Translates to: FLIFSHRNQILSNYGFDVRDSSI*FFPSVG Trigger: CCCAACAGAAGGGAAGAACCAGATAGATGAGTCCCG...GACATCAAAACCATAGTTACTAAGTATTTGGTTTCTGTGGGAGAAGATCAAGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| 3UTR GCA 72 bp | CAGCAGACACCATGGCTGTTTGGAATGCAGGAGCCATaGACTTTCTTATGCTGGTGGAAGGGCAGGGTGAAC | + |
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Preference number: 3 (lower is better) Translates to: QQTPWLFGMQEP*TFLCWWKGRVN Trigger: GTTCACCCTGCCCTTCCACCAGCATAAGAAAGTGCATGGCTCCTGCATTCCAAACAGCCATGGTGTCTGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| 3UTR GCA 72 bp | TGGCTGTTTGGAATGCAGGAGCCATGCACTTTCTTATaGTGGTGGAAGGGCAGGGTGAACATGCACAGAGCA | + |
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Preference number: 3 (lower is better) Translates to: WLFGMQEPCTFL*WWKGRVNMHRA Trigger: TGCTCTGTGCATGTTCACCCTGCCCTTCCACCAGCATAAGAAAGTGCATGGCTCCTGCATTCCAAACAGCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| 3UTR-3UTR CAA 90 bp | GAGAGACAGACCTGGATGCTTGGAAGAGTTGTTAAGTTTGCTGTATCTGGATTAGACTCTGCTCCTTTATaGAGAAACAGCTCTAATTTA | + |
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Preference number: 3 (lower is better) Translates to: ERQTWMLGRVVKFAVSGLDSAPL*RNSSNL Trigger: TAAATTAGAGCTGTTTCTCAATAAAGGAGCAGAGTC...TAATCCAGATACAGCAAACTTAACAACTCTTCCAAGCATCCAGGTCTGTCTCTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| 3UTR CCA 72 bp | AGATTACATTCCATCTTAGAGGGTGTAGACGCCTCCTaGGAACTGAGATACATATTTCATACTTTCTCAAGT | + |
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Preference number: 3 (lower is better) Translates to: RLHSILEGVDAS*ELRYIFHTFSS Trigger: ACTTGAGAAAGTATGAAATATGTATCTCAGTTCCCAGGAGGCGTCTACACCCTCTAAGATGGAATGTAATCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| 3UTR TCA 72 bp | TGTATCTGGATTAAGAAGACTAAAGCTATCATTCAGTaGCATCCTTTGGCCTTTATAGTTACTACATCCGGG | + |
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Preference number: 3 (lower is better) Translates to: CIWIKKTKAIIQ*HPLAFIVTTSG Trigger: CCCGGATGTAGTAACTATAAAGGCCAAAGGATGTCACTGAATGATAGCTTTAGTCTTCTTAATCCAGATACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| 3UTR-3UTR CAA 90 bp | GGATCAAACATAAATCCAATTCTAATGTCAGTCAAGGACAGAAATGAATACAGCGGTTCTTCCCTTCTGTaGGGTTTCTTGTTTCTTTCT | + |
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Preference number: 3 (lower is better) Translates to: GSNINPILMSVKDRNEYSGSSLL*GFLFLS Trigger: AGAAAGAAACAAGAAACCCAACAGAAGGGAAGAACC...GCTGTATTCATTTCTGTCCTTGACTGACATTAGAATTGGATTTATGTTTGATCC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| 3UTR-3UTR CAA 90 bp | CCCACAGAAACCAAATACTTAGTAACTATGGTTTTGATGTCAAATGAATGCCCTAAGGGTTCTGATAGTTaGTATTGCAAATTTCCCAAC | + |
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Preference number: 3 (lower is better) Translates to: PTETKYLVTMVLMSNECPKGSDS*YCKFPN Trigger: GTTGGGAAATTTGCAATACAAACTATCAGAACCCTT...AGGGCATTCATTTGACATCAAAACCATAGTTACTAAGTATTTGGTTTCTGTGGG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| 3UTR TCA 72 bp | AACCAAATACTTAGTAACTATGGTTTTGATGTCAAATaGATGCCCTCGAAGATTACATTCCATCTTAGAGGG | + |
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Preference number: 3 (lower is better) Translates to: NQILSNYGFDVK*MPSKITFHLRG Trigger: CCCTCTAAGATGGAATGTAATCTTCGAGGGCATTCATTTGACATCAAAACCATAGTTACTAAGTATTTGGTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR TCA 90 bp | GAGAGACAGACCTGGATGCTTGGAAGAGTTGTTAAGTTTGCTGTATCTGGATTATGGGGGCGGCCAGGCTaGTGGGGGACGATATGCCGA | + |
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Preference number: 4 (lower is better) Translates to: ERQTWMLGRVVKFAVSGLWGRPG*WGTICR Trigger: TCGGCATATCGTCCCCCATCAGCCTGGCCGCCCCCA...TAATCCAGATACAGCAAACTTAACAACTCTTCCAAGCATCCAGGTCTGTCTCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| 3UTR CAA 72 bp | TTGTGCCTGGCTGTCTCCAGCAGACACCATGGCTGTTaGGAATGCAGGAGCCATGCACTTTCTTATGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: LCLAVSSRHHGC*ECRSHALSYAG Trigger: ACCAGCATAAGAAAGTGCATGGCTCCTGCATTCCAAACAGCCATGGTGTCTGCTGGAGACAGCCAGGCACAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR TCA 90 bp | GCGGGACTCATCTATCTGGTTCTTCCCTTCTGTTGGGTTTCTTGTTTCTTTCTTGGACTGTTTCTGCCCTaGGGGTTTCCAGTCAGTGGA | + |
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Preference number: 4 (lower is better) Translates to: AGLIYLVLPFCWVSCFFLGLFLP*GFPVSG Trigger: TCCACTGACTGGAAACCCTCAGGGCAGAAACAGTCC...AAGAAAGAAACAAGAAACCCAACAGAAGGGAAGAACCAGATAGATGAGTCCCGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR CCA 90 bp | GCGGGACTCATCTATCTGGTTCTTCCCTTCTGTTGGGTTTCTTGTTTCTTTCTTGTCAGCAGTTTCTTTTaGTGCTGGAAACGACTGAGG | + |
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Preference number: 4 (lower is better) Translates to: AGLIYLVLPFCWVSCFFLVSSFF*CWKRLR Trigger: CCTCAGTCGTTTCCAGCACCAAAAGAAACTGCTGAC...AAGAAAGAAACAAGAAACCCAACAGAAGGGAAGAACCAGATAGATGAGTCCCGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR GCA 90 bp | GCGGGACTCATCTATCTGGTTCTTCCCTTCTGTTGGGTTTCTTGTTTCTTTCTTAGCAGTTTCTTTTGGTaGTGGAAACGACTGAGGATT | + |
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Preference number: 4 (lower is better) Translates to: AGLIYLVLPFCWVSCFFLSSFFW*WKRLRI Trigger: AATCCTCAGTCGTTTCCAGCACCAAAAGAAACTGCT...AAGAAAGAAACAAGAAACCCAACAGAAGGGAAGAACCAGATAGATGAGTCCCGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR GCA 90 bp | CCCACAGAAACCAAATACTTAGTAACTATGGTTTTGATGTCAAATGAATGCCCTGAGCAGGACTGTTTCTaGCCTGAGGGTTTCCAGTCA | + |
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Preference number: 4 (lower is better) Translates to: PTETKYLVTMVLMSNECPEQDCF*PEGFQS Trigger: TGACTGGAAACCCTCAGGGCAGAAACAGTCCTGCTC...AGGGCATTCATTTGACATCAAAACCATAGTTACTAAGTATTTGGTTTCTGTGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR GCA 90 bp | CTCAATAAAAGGAATAGGATCTCTAGGAAAAACAGGGATACCGGGCTTATCTGTTATGTTGGTCACAGATaGTGCCATAACAGCCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: LNKRNRISRKNRDTGLICYVGHR*CHNSQS Trigger: GCTCTGGCTGTTATGGCAGCATCTGTGACCAACATA...ACAGATAAGCCCGGTATCCCTGTTTTTCCTAGAGATCCTATTCCTTTTATTGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR CCA 90 bp | GAGAGACAGACCTGGATGCTTGGAAGAGTTGTTAAGTTTGCTGTATCTGGATTAATGTTGTTTCTCTGTTaGCGCACTTGCCAGAAGTAC | + |
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Preference number: 4 (lower is better) Translates to: ERQTWMLGRVVKFAVSGLMLFLC*RTCQKY Trigger: GTACTTCTGGCAAGTGCGCCAACAGAGAAACAACAT...TAATCCAGATACAGCAAACTTAACAACTCTTCCAAGCATCCAGGTCTGTCTCTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR CCA 90 bp | GAGAGACAGACCTGGATGCTTGGAAGAGTTGTTAAGTTTGCTGTATCTGGATTAGGATGCTATTGCATTTaGGTAAAGCTGGCAAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: ERQTWMLGRVVKFAVSGLGCYCI*VKLASS Trigger: AGAACTTGCCAGCTTTACCCAAATGCAATAGCATCC...TAATCCAGATACAGCAAACTTAACAACTCTTCCAAGCATCCAGGTCTGTCTCTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR CCA 90 bp | CCCACAGAAACCAAATACTTAGTAACTATGGTTTTGATGTCAAATGAATGCCCTAGGGTTTCCAGTCAGTaGACCTGTCTTCATAGTGCC | + |
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Preference number: 4 (lower is better) Translates to: PTETKYLVTMVLMSNECPRVSSQ*TCLHSA Trigger: GGCACTATGAAGACAGGTCCACTGACTGGAAACCCT...AGGGCATTCATTTGACATCAAAACCATAGTTACTAAGTATTTGGTTTCTGTGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR GCA 90 bp | AGACAGACCTGGATGCTTGGAAGAGTTGTTAAGTTTGCTGTATCTGGATTAAGATCTATGGGATTCACATaGTGCAAGGAAACATCAGGA | + |
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Preference number: 4 (lower is better) Translates to: RQTWMLGRVVKFAVSGLRSMGFT*CKETSG Trigger: TCCTGATGTTTCCTTGCAGCATGTGAATCCCATAGA...TCTTAATCCAGATACAGCAAACTTAACAACTCTTCCAAGCATCCAGGTCTGTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR CCA 90 bp | GGATCAAACATAAATCCAATTCTAATGTCAGTCAAGGACAGAAATGAATACAGCTCGATCCACGTGTCTTaGTGCAACGCACAAAGCATC | + |
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Preference number: 4 (lower is better) Translates to: GSNINPILMSVKDRNEYSSIHVS*CNAQSI Trigger: GATGCTTTGTGCGTTGCACCAAGACACGTGGATCGA...GCTGTATTCATTTCTGTCCTTGACTGACATTAGAATTGGATTTATGTTTGATCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR CCA 90 bp | GAGAGACAGACCTGGATGCTTGGAAGAGTTGTTAAGTTTGCTGTATCTGGATTAATTTTCGCACAAGAGTaGATGCTATTGCATTTGGGT | + |
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Preference number: 4 (lower is better) Translates to: ERQTWMLGRVVKFAVSGLIFAQE*MLLHLG Trigger: ACCCAAATGCAATAGCATCCACTCTTGTGCGAAAAT...TAATCCAGATACAGCAAACTTAACAACTCTTCCAAGCATCCAGGTCTGTCTCTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR CCA 90 bp | AGACAGACCTGGATGCTTGGAAGAGTTGTTAAGTTTGCTGTATCTGGATTAAGAGAAGGTCTAGATGGATaGTTTACCAGATGTGTCGAA | + |
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Preference number: 4 (lower is better) Translates to: RQTWMLGRVVKFAVSGLREGLDG*FTRCVE Trigger: TTCGACACATCTGGTAAACCATCCATCTAGACCTTC...TCTTAATCCAGATACAGCAAACTTAACAACTCTTCCAAGCATCCAGGTCTGTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR TCA 90 bp | CTCAATAAAAGGAATAGGATCTCTAGGAAAAACAGGGATACCGGGCTTATCTGTTGTCATAGAAGGAGGTaGAAAAGTCATTTCGATCCA | + |
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Preference number: 4 (lower is better) Translates to: LNKRNRISRKNRDTGLICCHRRR*KSHFDP Trigger: TGGATCGAAATGACTTTTTCACCTCCTTCTATGACA...ACAGATAAGCCCGGTATCCCTGTTTTTCCTAGAGATCCTATTCCTTTTATTGAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR GCA 90 bp | GAGAGACAGACCTGGATGCTTGGAAGAGTTGTTAAGTTTGCTGTATCTGGATTAAAGTTTGGACCATTCTaGCTTATTCAGCAGAATTTC | + |
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Preference number: 4 (lower is better) Translates to: ERQTWMLGRVVKFAVSGLKFGPF*LIQQNF Trigger: GAAATTCTGCTGAATAAGGCAGAATGGTCCAAACTT...TAATCCAGATACAGCAAACTTAACAACTCTTCCAAGCATCCAGGTCTGTCTCTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR CCA 90 bp | CCCACAGAAACCAAATACTTAGTAACTATGGTTTTGATGTCAAATGAATGCCCTACTAGGATTCACTCTTaGGTCCCATACAGGCAAGTT | + |
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Preference number: 4 (lower is better) Translates to: PTETKYLVTMVLMSNECPTRIHS*VPYRQV Trigger: AACTTGCCTGTATGGGACCCAAGAGTGAATCCTAGT...AGGGCATTCATTTGACATCAAAACCATAGTTACTAAGTATTTGGTTTCTGTGGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR TCA 90 bp | GGATCAAACATAAATCCAATTCTAATGTCAGTCAAGGACAGAAATGAATACAGCACTCAGTGCAATTCCTaGGCTTTCTATGGGATTCAC | + |
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Preference number: 4 (lower is better) Translates to: GSNINPILMSVKDRNEYSTQCNS*AFYGIH Trigger: GTGAATCCCATAGAAAGCTCAGGAATTGCACTGAGT...GCTGTATTCATTTCTGTCCTTGACTGACATTAGAATTGGATTTATGTTTGATCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR GCA 90 bp | CCCACAGAAACCAAATACTTAGTAACTATGGTTTTGATGTCAAATGAATGCCCTAAGAGTGGATGCTATTaGATTTGGGTAAAGCTGGCA | + |
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Preference number: 4 (lower is better) Translates to: PTETKYLVTMVLMSNECPKSGCY*IWVKLA Trigger: TGCCAGCTTTACCCAAATGCAATAGCATCCACTCTT...AGGGCATTCATTTGACATCAAAACCATAGTTACTAAGTATTTGGTTTCTGTGGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR GCA 90 bp | GGATCAAACATAAATCCAATTCTAATGTCAGTCAAGGACAGAAATGAATACAGCAGGGAATCTGAGGGATaGTTTCACTCAGTGCAATTC | + |
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Preference number: 4 (lower is better) Translates to: GSNINPILMSVKDRNEYSRESEG*FHSVQF Trigger: GAATTGCACTGAGTGAAAGCATCCCTCAGATTCCCT...GCTGTATTCATTTCTGTCCTTGACTGACATTAGAATTGGATTTATGTTTGATCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR CCA 90 bp | TTCTTGATCTTCTCCCACAGAAACCAAATACTTAGTAACTATGGTTTTGATGTCAGTTTCTTTTGGTGCTaGAAACGACTGAGGATTCAC | + |
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Preference number: 4 (lower is better) Translates to: FLIFSHRNQILSNYGFDVSFFWC*KRLRIH Trigger: GTGAATCCTCAGTCGTTTCCAGCACCAAAAGAAACT...GACATCAAAACCATAGTTACTAAGTATTTGGTTTCTGTGGGAGAAGATCAAGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR GCA 90 bp | GGATCAAACATAAATCCAATTCTAATGTCAGTCAAGGACAGAAATGAATACAGCTCCTTCCTTCTTAGATaGATTGCAGCAATCTTCATA | + |
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Preference number: 4 (lower is better) Translates to: GSNINPILMSVKDRNEYSSFLLR*IAAIFI Trigger: TATGAAGATTGCTGCAATGCATCTAAGAAGGAAGGA...GCTGTATTCATTTCTGTCCTTGACTGACATTAGAATTGGATTTATGTTTGATCC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR CCA 90 bp | GGATCAAACATAAATCCAATTCTAATGTCAGTCAAGGACAGAAATGAATACAGCGAGCTTCAAAAAGTTTaGACCATTCTGCCTTATTCA | + |
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Preference number: 4 (lower is better) Translates to: GSNINPILMSVKDRNEYSELQKV*TILPYS Trigger: TGAATAAGGCAGAATGGTCCAAACTTTTTGAAGCTC...GCTGTATTCATTTCTGTCCTTGACTGACATTAGAATTGGATTTATGTTTGATCC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR CAA 90 bp | GGATCAAACATAAATCCAATTCTAATGTCAGTCAAGGACAGAAATGAATACAGCCGGGGCGGGAGCCGGTaGTTGTGCTCCTTGGGTGGT | + |
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Preference number: 5 (lower is better) Translates to: GSNINPILMSVKDRNEYSRGGSR*LCSLGG Trigger: ACCACCCAAGGAGCACAACAACCGGCTCCCGCCCCG...GCTGTATTCATTTCTGTCCTTGACTGACATTAGAATTGGATTTATGTTTGATCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS TCA 90 bp | CTGAGGGTTTCCAGTCAGTGGACCTGTCTTCATAGTGCCAGTAGGTaGAGGAGCAGTCATGCTGTTTTCACTGTCTATAGACAAGAGAAG | + |
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Preference number: 5 (lower is better) Translates to: LRVSSQWTCLHSASR*RSSHAVFTVYRQEK Trigger: CTTCTCTTGTCTATAGACAGTGAAAACAGCATGACTGCTCCTTCACCTACTGGCACTATGAAGACAGGTCCACTGACTGGAAACCCTCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS TCA 90 bp | ATTGTAGGCTTAGGTGGTGGTGAAATGGTAGGTTGTGAGGGAATCTaGGGGATGCTTTCACTCAGTGCAATTCCTGAGCTTTCTATGGGA | + |
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Preference number: 5 (lower is better) Translates to: IVGLGGGEMVGCEGI*GMLSLSAIPELSMG Trigger: TCCCATAGAAAGCTCAGGAATTGCACTGAGTGAAAGCATCCCTCAGATTCCCTCACAACCTACCATTTCACCACCACCTAAGCCTACAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR CAA 90 bp | GCGGGACTCATCTATCTGGTTCTTCCCTTCTGTTGGGTTTCTTGTTTCTTTCTTCAAGAGTGGATGCTATaGCATTTGGGTAAAGCTGGC | + |
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Preference number: 5 (lower is better) Translates to: AGLIYLVLPFCWVSCFFLQEWML*HLGKAG Trigger: GCCAGCTTTACCCAAATGCAATAGCATCCACTCTTG...AAGAAAGAAACAAGAAACCCAACAGAAGGGAAGAACCAGATAGATGAGTCCCGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS CCA 90 bp | GAATCTGAGGGATGCTTTCACTCAGTGCAATTCCTGAGCTTTCTATaGGATTCACATGCTGCAAGGAAACATCAGGAAACTGTATGTTGG | + |
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Preference number: 5 (lower is better) Translates to: ESEGCFHSVQFLSFL*DSHAARKHQETVCW Trigger: CCAACATACAGTTTCCTGATGTTTCCTTGCAGCATGTGAATCCCATAGAAAGCTCAGGAATTGCACTGAGTGAAAGCATCCCTCAGATTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS GCA 90 bp | ATGCTTTCACTCAGTGCAATTCCTGAGCTTTCTATGGGATTCACATaGTGCAAGGAAACATCAGGAAACTGTATGTTGGTCACAGATGCT | + |
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Preference number: 5 (lower is better) Translates to: MLSLSAIPELSMGFT*CKETSGNCMLVTDA Trigger: AGCATCTGTGACCAACATACAGTTTCCTGATGTTTCCTTGCAGCATGTGAATCCCATAGAAAGCTCAGGAATTGCACTGAGTGAAAGCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR CAA 90 bp | GCGGGACTCATCTATCTGGTTCTTCCCTTCTGTTGGGTTTCTTGTTTCTTTCTTTTAACAACACTGGATTaGGCCATTCCCACTCAGAAA | + |
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Preference number: 5 (lower is better) Translates to: AGLIYLVLPFCWVSCFFLLTTLD*AIPTQK Trigger: TTTCTGAGTGGGAATGGCCAAATCCAGTGTTGTTAA...AAGAAAGAAACAAGAAACCCAACAGAAGGGAAGAACCAGATAGATGAGTCCCGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR CAA 90 bp | GAGAGACAGACCTGGATGCTTGGAAGAGTTGTTAAGTTTGCTGTATCTGGATTAGATTGGGTATGTTCGTaGCTGTATTTCCTGAAGGTC | + |
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Preference number: 5 (lower is better) Translates to: ERQTWMLGRVVKFAVSGLDWVCS*LYFLKV Trigger: GACCTTCAGGAAATACAGCAACGAACATACCCAATC...TAATCCAGATACAGCAAACTTAACAACTCTTCCAAGCATCCAGGTCTGTCTCTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR CAA 90 bp | GCGGGACTCATCTATCTGGTTCTTCCCTTCTGTTGGGTTTCTTGTTTCTTTCTTACTCCTAGTATAGGATaGGGTATGTTCGTTGCTGTA | + |
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Preference number: 5 (lower is better) Translates to: AGLIYLVLPFCWVSCFFLTPSIG*GMFVAV Trigger: TACAGCAACGAACATACCCAATCCTATACTAGGAGT...AAGAAAGAAACAAGAAACCCAACAGAAGGGAAGAACCAGATAGATGAGTCCCGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR CAA 90 bp | CCCACAGAAACCAAATACTTAGTAACTATGGTTTTGATGTCAAATGAATGCCCTTTCGATCCACGTGTCTaGGTGCAACGCACAAAGCAT | + |
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Preference number: 5 (lower is better) Translates to: PTETKYLVTMVLMSNECPFDPRV*VQRTKH Trigger: ATGCTTTGTGCGTTGCACCAAGACACGTGGATCGAA...AGGGCATTCATTTGACATCAAAACCATAGTTACTAAGTATTTGGTTTCTGTGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR CAA 90 bp | GCGGGACTCATCTATCTGGTTCTTCCCTTCTGTTGGGTTTCTTGTTTCTTTCTTGTACGAAATTCTTCCTaGTCAGCAGTTTCTTTTGGT | + |
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Preference number: 5 (lower is better) Translates to: AGLIYLVLPFCWVSCFFLVRNSS*SAVSFG Trigger: ACCAAAAGAAACTGCTGACAAGGAAGAATTTCGTAC...AAGAAAGAAACAAGAAACCCAACAGAAGGGAAGAACCAGATAGATGAGTCCCGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR CAA 90 bp | CTCAATAAAAGGAATAGGATCTCTAGGAAAAACAGGGATACCGGGCTTATCTGTTCAGGAAACTGTATGTaGGTCACAGATGCTGCCATA | + |
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Preference number: 5 (lower is better) Translates to: LNKRNRISRKNRDTGLICSGNCM*VTDAAI Trigger: TATGGCAGCATCTGTGACCAACATACAGTTTCCTGA...ACAGATAAGCCCGGTATCCCTGTTTTTCCTAGAGATCCTATTCCTTTTATTGAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR CAA 90 bp | GAGAGACAGACCTGGATGCTTGGAAGAGTTGTTAAGTTTGCTGTATCTGGATTAATTCTCAATTACAGCTaGTGGAAGATTCCTGCTTTC | + |
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Preference number: 5 (lower is better) Translates to: ERQTWMLGRVVKFAVSGLILNYS*WKIPAF Trigger: GAAAGCAGGAATCTTCCACAAGCTGTAATTGAGAAT...TAATCCAGATACAGCAAACTTAACAACTCTTCCAAGCATCCAGGTCTGTCTCTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR CAA 90 bp | GGATCAAACATAAATCCAATTCTAATGTCAGTCAAGGACAGAAATGAATACAGCCCATCAAAACACAGTTaGATAACCGGCACAAAGGCC | + |
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Preference number: 5 (lower is better) Translates to: GSNINPILMSVKDRNEYSPSKHS*ITGTKA Trigger: GGCCTTTGTGCCGGTTATCAAACTGTGTTTTGATGG...GCTGTATTCATTTCTGTCCTTGACTGACATTAGAATTGGATTTATGTTTGATCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR CAA 90 bp | CCCACAGAAACCAAATACTTAGTAACTATGGTTTTGATGTCAAATGAATGCCCTTGGATGCTATTGCATTaGGGTAAAGCTGGCAAGTTC | + |
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Preference number: 5 (lower is better) Translates to: PTETKYLVTMVLMSNECPWMLLH*GKAGKF Trigger: GAACTTGCCAGCTTTACCCAAATGCAATAGCATCCA...AGGGCATTCATTTGACATCAAAACCATAGTTACTAAGTATTTGGTTTCTGTGGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR CAA 90 bp | AGACAGACCTGGATGCTTGGAAGAGTTGTTAAGTTTGCTGTATCTGGATTAAGATGTGATAGCAAGTCCTaGTTTAAACTCCTCAATCAT | + |
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Preference number: 5 (lower is better) Translates to: RQTWMLGRVVKFAVSGLRCDSKS*FKLLNH Trigger: ATGATTGAGGAGTTTAAACAAGGACTTGCTATCACA...TCTTAATCCAGATACAGCAAACTTAACAACTCTTCCAAGCATCCAGGTCTGTCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS-3UTR CAA 90 bp | GGATCAAACATAAATCCAATTCTAATGTCAGTCAAGGACAGAAATGAATACAGCAATGTTGTTTCTCTGTaGGCGCACTTGCCAGAAGTA | + |
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Preference number: 5 (lower is better) Translates to: GSNINPILMSVKDRNEYSNVVSL*AHLPEV Trigger: TACTTCTGGCAAGTGCGCCAACAGAGAAACAACATT...GCTGTATTCATTTCTGTCCTTGACTGACATTAGAATTGGATTTATGTTTGATCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS TCA 72 bp | TCCAGTCAGTGGACCTGTCTTCATAGTGCCAGTAGGTaGAGGAGCAGTCATGCTGTTTTCACTGTCTATAGA | + |
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Preference number: 6 (lower is better) Translates to: SSQWTCLHSASR*RSSHAVFTVYR Trigger: TCTATAGACAGTGAAAACAGCATGACTGCTCCTTCACCTACTGGCACTATGAAGACAGGTCCACTGACTGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS TCA 72 bp | GGGAATCTGAGGGATGCTTTCACTCAGTGCAATTCCTaGGCTTTCTATGGGATTCACATGCTGCAAGGAAAC | + |
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Preference number: 6 (lower is better) Translates to: GNLRDAFTQCNS*AFYGIHMLQGN Trigger: GTTTCCTTGCAGCATGTGAATCCCATAGAAAGCTCAGGAATTGCACTGAGTGAAAGCATCCCTCAGATTCCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS TCA 72 bp | TTAGGTGGTGGTGAAATGGTAGGTTGTGAGGGAATCTaGGGGATGCTTTCACTCAGTGCAATTCCTGAGCTT | + |
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Preference number: 6 (lower is better) Translates to: LGGGEMVGCEGI*GMLSLSAIPEL Trigger: AAGCTCAGGAATTGCACTGAGTGAAAGCATCCCTCAGATTCCCTCACAACCTACCATTTCACCACCACCTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS GCA 72 bp | CTCAGTGCAATTCCTGAGCTTTCTATGGGATTCACATaGTGCAAGGAAACATCAGGAAACTGTATGTTGGTC | + |
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Preference number: 6 (lower is better) Translates to: LSAIPELSMGFT*CKETSGNCMLV Trigger: GACCAACATACAGTTTCCTGATGTTTCCTTGCAGCATGTGAATCCCATAGAAAGCTCAGGAATTGCACTGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS CCA 72 bp | GGATGCTTTCACTCAGTGCAATTCCTGAGCTTTCTATaGGATTCACATGCTGCAAGGAAACATCAGGAAACT | + |
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Preference number: 6 (lower is better) Translates to: GCFHSVQFLSFL*DSHAARKHQET Trigger: AGTTTCCTGATGTTTCCTTGCAGCATGTGAATCCCATAGAAAGCTCAGGAATTGCACTGAGTGAAAGCATCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS TCA 72 bp | CTTCCTCTTGTAGTTTCAATTTGTCATAGAAGGAGGTaGAAAAGTCATTTCGATCCACGTGTCTTGGTGCAA | + |
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Preference number: 6 (lower is better) Translates to: LPLVVSICHRRR*KSHFDPRVLVQ Trigger: TTGCACCAAGACACGTGGATCGAAATGACTTTTTCACCTCCTTCTATGACAAATTGAAACTACAAGAGGAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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| CDS TCA 72 bp | TCTCAATTACAGCTTGTGGAAGATTCCTGCTTTCACTaGTTTCTCGGATCCATTCCTTCACCAGATTATTTA | + |
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Preference number: 6 (lower is better) Translates to: SQLQLVEDSCFH*FLGSIPSPDYL Trigger: TAAATAATCTGGTGAAGGAATGGATCCGAGAAATCAGTGAAAGCAGGAATCTTCCACAAGCTGTAATTGAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099400.3 |
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