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Pregenerated sensors for PAM16 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000014301

Ensembl transcript IDs: ENSMUST00000014445.7, ENSMUST00000156889.8

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CAATGGCTGGGGTGTGGAGAGCCCAGCAGTCACGTTTTGGGCTTCTaGCCTTTCTCTCTGTCTTCCTGGGCTTGTATTCGGAGTTCCTCA +
Preference number: 1 (lower is better)
Translates to: QWLGCGEPSSHVLGF*PFSLSSWACIRSSS
Trigger: TGAGGAACTCCGAATACAAGCCCAGGAAGACAGAGAGAAAGGGCAGAAGCCCAAAACGTGACTGCTGGGCTCTCCACACCCCAGCCATTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156889.8
3UTR TCA 72 bp ACACGCAAAAGACATTTATTACTAGGCTATAAATTATaGGGCAATGGCTGGGGTGTGGAGAGCCCAGCAGTC +
Preference number: 3 (lower is better)
Translates to: TRKRHLLLGYKL*GNGWGVESPAV
Trigger: GACTGCTGGGCTCTCCACACCCCAGCCATTGCCTCATAATTTATAGCCTAGTAATAAATGTCTTTTGCGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156889.8
CDS-3UTR GCA 90 bp ATTATGAGGCAATGGCTGGGGTGTGGAGAGCCCAGCAGTCACGTTTTGGGCTTCTCCTCGGGGCTCAGCTaGAAACTCCTGCCTCAGGGC +
Preference number: 4 (lower is better)
Translates to: IMRQWLGCGEPSSHVLGFSSGLS*KLLPQG
Trigger: GCCCTGAGGCAGGAGTTTGCAGCTGAGCCCCGAGGA...GAAGCCCAAAACGTGACTGCTGGGCTCTCCACACCCCAGCCATTGCCTCATAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000156889.8
CDS-3UTR GCA 90 bp CTTCCTGGGCTTGTATTCGGAGTTCCTCATCTAGACGTTCCTTTGCACGGACAAGCTCTGCCCACCACCTaGACACCCATCACAATGATC +
Preference number: 4 (lower is better)
Translates to: LPGLVFGVPHLDVPLHGQALPTT*TPITMI
Trigger: GATCATTGTGATGGGTGTGCAGGTGGTGGGCAGAGC...TTGTCCGTGCAAAGGAACGTCTAGATGAGGAACTCCGAATACAAGCCCAGGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156889.8
CDS-3UTR GCA 90 bp TGTATTCGGAGTTCCTCATCTAGACGTTCCTTTGCACGGACAACCTTTGACTGCTCAGCTGCAAACTCCTaGCTCAGGGCCCTGGCAAAG +
Preference number: 4 (lower is better)
Translates to: CIRSSSSRRSFARTTFDCSAANS*LRALAK
Trigger: CTTTGCCAGGGCCCTGAGGCAGGAGTTTGCAGCTGA...GCAGTCAAAGGTTGTCCGTGCAAAGGAACGTCTAGATGAGGAACTCCGAATACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156889.8
CDS-3UTR TCA 90 bp GTATTCGGAGTTCCTCATCTAGACGTTCCTTTGCACGGACAACCTTTGACTGCAGCACACCCATCACAATaGTCTGGGCCAGGTACTTGG +
Preference number: 4 (lower is better)
Translates to: VFGVPHLDVPLHGQPLTAAHPSQ*SGPGTW
Trigger: CCAAGTACCTGGCCCAGATCATTGTGATGGGTGTGC...TGCAGTCAAAGGTTGTCCGTGCAAAGGAACGTCTAGATGAGGAACTCCGAATAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156889.8
3UTR CAA 72 bp GGGCTTGTATTCGGAGTTCCTCATCTAGACGTTCCTTaGCACGGACAACCTTTGACTGCAGGTAGAAAGAGC +
Preference number: 4 (lower is better)
Translates to: GLVFGVPHLDVP*HGQPLTAGRKS
Trigger: GCTCTTTCTACCTGCAGTCAAAGGTTGTCCGTGCAAAGGAACGTCTAGATGAGGAACTCCGAATACAAGCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156889.8
CDS CCA 90 bp GCTGCAGACTGGTGCCCAGCACGCCCTCGAGCGTCAGCGGCTGCCTaGCTGGCTGCAAACTCCTGCCTCAGGGCCCTGGCAAAGGCTCTG +
Preference number: 5 (lower is better)
Translates to: AADWCPARPRASAAA*LAANSCLRALAKAL
Trigger: CAGAGCCTTTGCCAGGGCCCTGAGGCAGGAGTTTGCAGCCAGCCAGGCAGCCGCTGACGCTCGAGGGCGTGCTGGGCACCAGTCTGCAGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000014445.7
CDS CCA 90 bp GCTTCCTGGAGGCTGAGGCCAGAGAGATTGGATGCAGCTGCAGACTaGTGCCCAGCACGCCCTCGAGCGTCAGCGGCTGCCTGGCTGGCT +
Preference number: 5 (lower is better)
Translates to: ASWRLRPERLDAAAD*CPARPRASAAAWLA
Trigger: AGCCAGCCAGGCAGCCGCTGACGCTCGAGGGCGTGCTGGGCACCAGTCTGCAGCTGCATCCAATCTCTCTGGCCTCAGCCTCCAGGAAGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000014445.7
CDS CCA 90 bp TCCTCGGGGCTCAGCTTGGAGACGTTGAGAATCTGCTGGGCTTCCTaGAGGCTGAGGCCAGAGAGATTGGATGCAGCTGCAGACTGGTGC +
Preference number: 5 (lower is better)
Translates to: SSGLSLETLRICWAS*RLRPERLDAAADWC
Trigger: GCACCAGTCTGCAGCTGCATCCAATCTCTCTGGCCTCAGCCTCCAGGAAGCCCAGCAGATTCTCAACGTCTCCAAGCTGAGCCCCGAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000014445.7
CDS CCA 90 bp TTCTGGACCTCCTCGGGGCTCAGCTTGGAGACGTTGAGAATCTGCTaGGCTTCCTGGAGGCTGAGGCCAGAGAGATTGGATGCAGCTGCA +
Preference number: 5 (lower is better)
Translates to: FWTSSGLSLETLRIC*ASWRLRPERLDAAA
Trigger: TGCAGCTGCATCCAATCTCTCTGGCCTCAGCCTCCAGGAAGCCCAGCAGATTCTCAACGTCTCCAAGCTGAGCCCCGAGGAGGTCCAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000014445.7
CDS CCA 72 bp TGGTGCCCAGCACGCCCTCGAGCGTCAGCGGCTGCCTaGCTGGCTGCAAACTCCTGCCTCAGGGCCCTGGCA +
Preference number: 6 (lower is better)
Translates to: WCPARPRASAAA*LAANSCLRALA
Trigger: TGCCAGGGCCCTGAGGCAGGAGTTTGCAGCCAGCCAGGCAGCCGCTGACGCTCGAGGGCGTGCTGGGCACCA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000014445.7
CDS GCA 72 bp AGACTGGTGCCCAGCACGCCCTCGAGCGTCAGCGGCTaGCTGGCTGGCTGCAAACTCCTGCCTCAGGGCCCT +
Preference number: 6 (lower is better)
Translates to: RLVPSTPSSVSG*LAGCKLLPQGP
Trigger: AGGGCCCTGAGGCAGGAGTTTGCAGCCAGCCAGGCAGCCGCTGACGCTCGAGGGCGTGCTGGGCACCAGTCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000014445.7
CDS GCA 72 bp CTGAGGCCAGAGAGATTGGATGCAGCTGCAGACTGGTaGCCAGCACGCCCTCGAGCGTCAGCGGCTGCCTGG +
Preference number: 6 (lower is better)
Translates to: LRPERLDAAADW*PARPRASAAAW
Trigger: CCAGGCAGCCGCTGACGCTCGAGGGCGTGCTGGGCACCAGTCTGCAGCTGCATCCAATCTCTCTGGCCTCAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000014445.7
CDS CCA 72 bp AGGCTGAGGCCAGAGAGATTGGATGCAGCTGCAGACTaGTGCCCAGCACGCCCTCGAGCGTCAGCGGCTGCC +
Preference number: 6 (lower is better)
Translates to: RLRPERLDAAAD*CPARPRASAAA
Trigger: GGCAGCCGCTGACGCTCGAGGGCGTGCTGGGCACCAGTCTGCAGCTGCATCCAATCTCTCTGGCCTCAGCCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000014445.7
CDS CCA 72 bp TCCTCGGGGCTCAGCTTGGAGACGTTGAGAATCTGCTaGGCTTCCTGGAGGCTGAGGCCAGAGAGATTGGAT +
Preference number: 6 (lower is better)
Translates to: SSGLSLETLRIC*ASWRLRPERLD
Trigger: ATCCAATCTCTCTGGCCTCAGCCTCCAGGAAGCCCAGCAGATTCTCAACGTCTCCAAGCTGAGCCCCGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000014445.7