Pregenerated sensors for PAM16 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000014301Ensembl transcript IDs: ENSMUST00000014445.7, ENSMUST00000156889.8
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR GCA 90 bp | CAATGGCTGGGGTGTGGAGAGCCCAGCAGTCACGTTTTGGGCTTCTaGCCTTTCTCTCTGTCTTCCTGGGCTTGTATTCGGAGTTCCTCA | + |
Preference number: 1 (lower is better) Translates to: QWLGCGEPSSHVLGF*PFSLSSWACIRSSS Trigger: TGAGGAACTCCGAATACAAGCCCAGGAAGACAGAGAGAAAGGGCAGAAGCCCAAAACGTGACTGCTGGGCTCTCCACACCCCAGCCATTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156889.8 |
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3UTR TCA 72 bp | ACACGCAAAAGACATTTATTACTAGGCTATAAATTATaGGGCAATGGCTGGGGTGTGGAGAGCCCAGCAGTC | + |
Preference number: 3 (lower is better) Translates to: TRKRHLLLGYKL*GNGWGVESPAV Trigger: GACTGCTGGGCTCTCCACACCCCAGCCATTGCCTCATAATTTATAGCCTAGTAATAAATGTCTTTTGCGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156889.8 |
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CDS-3UTR GCA 90 bp | ATTATGAGGCAATGGCTGGGGTGTGGAGAGCCCAGCAGTCACGTTTTGGGCTTCTCCTCGGGGCTCAGCTaGAAACTCCTGCCTCAGGGC | + |
Preference number: 4 (lower is better) Translates to: IMRQWLGCGEPSSHVLGFSSGLS*KLLPQG Trigger: GCCCTGAGGCAGGAGTTTGCAGCTGAGCCCCGAGGA...GAAGCCCAAAACGTGACTGCTGGGCTCTCCACACCCCAGCCATTGCCTCATAAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000156889.8 |
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CDS-3UTR GCA 90 bp | CTTCCTGGGCTTGTATTCGGAGTTCCTCATCTAGACGTTCCTTTGCACGGACAAGCTCTGCCCACCACCTaGACACCCATCACAATGATC | + |
Preference number: 4 (lower is better) Translates to: LPGLVFGVPHLDVPLHGQALPTT*TPITMI Trigger: GATCATTGTGATGGGTGTGCAGGTGGTGGGCAGAGC...TTGTCCGTGCAAAGGAACGTCTAGATGAGGAACTCCGAATACAAGCCCAGGAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156889.8 |
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CDS-3UTR GCA 90 bp | TGTATTCGGAGTTCCTCATCTAGACGTTCCTTTGCACGGACAACCTTTGACTGCTCAGCTGCAAACTCCTaGCTCAGGGCCCTGGCAAAG | + |
Preference number: 4 (lower is better) Translates to: CIRSSSSRRSFARTTFDCSAANS*LRALAK Trigger: CTTTGCCAGGGCCCTGAGGCAGGAGTTTGCAGCTGA...GCAGTCAAAGGTTGTCCGTGCAAAGGAACGTCTAGATGAGGAACTCCGAATACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156889.8 |
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CDS-3UTR TCA 90 bp | GTATTCGGAGTTCCTCATCTAGACGTTCCTTTGCACGGACAACCTTTGACTGCAGCACACCCATCACAATaGTCTGGGCCAGGTACTTGG | + |
Preference number: 4 (lower is better) Translates to: VFGVPHLDVPLHGQPLTAAHPSQ*SGPGTW Trigger: CCAAGTACCTGGCCCAGATCATTGTGATGGGTGTGC...TGCAGTCAAAGGTTGTCCGTGCAAAGGAACGTCTAGATGAGGAACTCCGAATAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156889.8 |
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3UTR CAA 72 bp | GGGCTTGTATTCGGAGTTCCTCATCTAGACGTTCCTTaGCACGGACAACCTTTGACTGCAGGTAGAAAGAGC | + |
Preference number: 4 (lower is better) Translates to: GLVFGVPHLDVP*HGQPLTAGRKS Trigger: GCTCTTTCTACCTGCAGTCAAAGGTTGTCCGTGCAAAGGAACGTCTAGATGAGGAACTCCGAATACAAGCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156889.8 |
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CDS CCA 90 bp | GCTGCAGACTGGTGCCCAGCACGCCCTCGAGCGTCAGCGGCTGCCTaGCTGGCTGCAAACTCCTGCCTCAGGGCCCTGGCAAAGGCTCTG | + |
Preference number: 5 (lower is better) Translates to: AADWCPARPRASAAA*LAANSCLRALAKAL Trigger: CAGAGCCTTTGCCAGGGCCCTGAGGCAGGAGTTTGCAGCCAGCCAGGCAGCCGCTGACGCTCGAGGGCGTGCTGGGCACCAGTCTGCAGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000014445.7 |
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CDS CCA 90 bp | GCTTCCTGGAGGCTGAGGCCAGAGAGATTGGATGCAGCTGCAGACTaGTGCCCAGCACGCCCTCGAGCGTCAGCGGCTGCCTGGCTGGCT | + |
Preference number: 5 (lower is better) Translates to: ASWRLRPERLDAAAD*CPARPRASAAAWLA Trigger: AGCCAGCCAGGCAGCCGCTGACGCTCGAGGGCGTGCTGGGCACCAGTCTGCAGCTGCATCCAATCTCTCTGGCCTCAGCCTCCAGGAAGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000014445.7 |
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CDS CCA 90 bp | TCCTCGGGGCTCAGCTTGGAGACGTTGAGAATCTGCTGGGCTTCCTaGAGGCTGAGGCCAGAGAGATTGGATGCAGCTGCAGACTGGTGC | + |
Preference number: 5 (lower is better) Translates to: SSGLSLETLRICWAS*RLRPERLDAAADWC Trigger: GCACCAGTCTGCAGCTGCATCCAATCTCTCTGGCCTCAGCCTCCAGGAAGCCCAGCAGATTCTCAACGTCTCCAAGCTGAGCCCCGAGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000014445.7 |
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CDS CCA 90 bp | TTCTGGACCTCCTCGGGGCTCAGCTTGGAGACGTTGAGAATCTGCTaGGCTTCCTGGAGGCTGAGGCCAGAGAGATTGGATGCAGCTGCA | + |
Preference number: 5 (lower is better) Translates to: FWTSSGLSLETLRIC*ASWRLRPERLDAAA Trigger: TGCAGCTGCATCCAATCTCTCTGGCCTCAGCCTCCAGGAAGCCCAGCAGATTCTCAACGTCTCCAAGCTGAGCCCCGAGGAGGTCCAGAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000014445.7 |
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CDS CCA 72 bp | TGGTGCCCAGCACGCCCTCGAGCGTCAGCGGCTGCCTaGCTGGCTGCAAACTCCTGCCTCAGGGCCCTGGCA | + |
Preference number: 6 (lower is better) Translates to: WCPARPRASAAA*LAANSCLRALA Trigger: TGCCAGGGCCCTGAGGCAGGAGTTTGCAGCCAGCCAGGCAGCCGCTGACGCTCGAGGGCGTGCTGGGCACCA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000014445.7 |
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CDS GCA 72 bp | AGACTGGTGCCCAGCACGCCCTCGAGCGTCAGCGGCTaGCTGGCTGGCTGCAAACTCCTGCCTCAGGGCCCT | + |
Preference number: 6 (lower is better) Translates to: RLVPSTPSSVSG*LAGCKLLPQGP Trigger: AGGGCCCTGAGGCAGGAGTTTGCAGCCAGCCAGGCAGCCGCTGACGCTCGAGGGCGTGCTGGGCACCAGTCT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000014445.7 |
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CDS GCA 72 bp | CTGAGGCCAGAGAGATTGGATGCAGCTGCAGACTGGTaGCCAGCACGCCCTCGAGCGTCAGCGGCTGCCTGG | + |
Preference number: 6 (lower is better) Translates to: LRPERLDAAADW*PARPRASAAAW Trigger: CCAGGCAGCCGCTGACGCTCGAGGGCGTGCTGGGCACCAGTCTGCAGCTGCATCCAATCTCTCTGGCCTCAG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000014445.7 |
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CDS CCA 72 bp | AGGCTGAGGCCAGAGAGATTGGATGCAGCTGCAGACTaGTGCCCAGCACGCCCTCGAGCGTCAGCGGCTGCC | + |
Preference number: 6 (lower is better) Translates to: RLRPERLDAAAD*CPARPRASAAA Trigger: GGCAGCCGCTGACGCTCGAGGGCGTGCTGGGCACCAGTCTGCAGCTGCATCCAATCTCTCTGGCCTCAGCCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000014445.7 |
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CDS CCA 72 bp | TCCTCGGGGCTCAGCTTGGAGACGTTGAGAATCTGCTaGGCTTCCTGGAGGCTGAGGCCAGAGAGATTGGAT | + |
Preference number: 6 (lower is better) Translates to: SSGLSLETLRIC*ASWRLRPERLD Trigger: ATCCAATCTCTCTGGCCTCAGCCTCCAGGAAGCCCAGCAGATTCTCAACGTCTCCAAGCTGAGCCCCGAGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000014445.7 |