Pregenerated sensors for PALS2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038388Ensembl transcript IDs: ENSMUST00000036225.15, ENSMUST00000036236.15, ENSMUST00000166318.8, ENSMUST00000167628.2, ENSMUST00000171601.8, ENSMUST00000204545.3
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AGGAATATTCATTTCTGGGCTGGAAGGAGGCGAATCATAACACTTTaGTGCCACAATATCATGGGCCTCCAGGAGCGACTGGAAGTGAGG | + |
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Preference number: 5 (lower is better) Translates to: RNIHFWAGRRRIITL*CHNIMGLQERLEVR Trigger: CCTCACTTCCAGTCGCTCCTGGAGGCCCATGATATTGTGGCATCAAAGTGTTATGATTCGCCTCCTTCCAGCCCAGAAATGAATATTCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000036225.15 ENSMUST00000036236.15 ENSMUST00000166318.8 ENSMUST00000167628.2 ENSMUST00000204545.3 |
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| CDS CCA 90 bp | TTCAGTGCTTGTGGGTTGACGTCCAAAATGCAAGTCCGCCCAGTCTaGACAACCTCGAGAATAGAGTCGATCTTGGTTCCATACAGGTTT | + |
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Preference number: 5 (lower is better) Translates to: FSACGLTSKMQVRPV*TTSRIESILVPYRF Trigger: AAACCTGTATGGAACCAAGATCGACTCTATTCTCGAGGTTGTCCAGACTGGGCGGACTTGCATTTTGGACGTCAACCCACAAGCACTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000036225.15 ENSMUST00000036236.15 ENSMUST00000166318.8 ENSMUST00000204545.3 |
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| CDS TCA 90 bp | TGTGAATACCGAGAATACGGATGGCATCTACTGGCAATTGATTATTaGGAGAAGGAATATTCATTTCTGGGCTGGAAGGAGGCGAATCAT | + |
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Preference number: 5 (lower is better) Translates to: CEYREYGWHLLAIDY*EKEYSFLGWKEANH Trigger: ATGATTCGCCTCCTTCCAGCCCAGAAATGAATATTCCTTCTCTCAATAATCAATTGCCAGTAGATGCCATCCGTATTCTCGGTATTCACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000036225.15 ENSMUST00000036236.15 ENSMUST00000166318.8 ENSMUST00000167628.2 ENSMUST00000204545.3 |
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| CDS TCA 90 bp | AAATTTATATGCTTGTCCATCCTTTTCGTCTTCTCTTGGCTTCCGTaGAGTAAATGGCACCGTTGTTCCAAATCTAGCAGGATTCAGTAC | + |
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Preference number: 5 (lower is better) Translates to: KFICLSILFVFSWLP*SKWHRCSKSSRIQY Trigger: GTACTGAATCCTGCTAGATTTGGAACAACGGTGCCATTTACTTCACGGAAGCCAAGAGAAGACGAAAAGGATGGACAAGCATATAAATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000036225.15 ENSMUST00000036236.15 ENSMUST00000166318.8 ENSMUST00000204545.3 |
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| CDS TCA 90 bp | CAGTTTGTAGTTTCTCAAAGGCTTTGTCTAGATTGTCATTTACGATaGTCAAATCAAAGTAGTGGTTGTATGCTCTCTGAATTCGGGCAC | + |
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Preference number: 5 (lower is better) Translates to: QFVVSQRLCLDCHLR*SNQSSGCMLSEFGH Trigger: GTGCCCGAATTCAGAGAGCATACAACCACTACTTTGATTTGATCATCGTAAATGACAATCTAGACAAAGCCTTTGAGAAACTACAAACTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000036225.15 ENSMUST00000036236.15 ENSMUST00000166318.8 ENSMUST00000204545.3 |
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| CDS TCA 72 bp | GCCACAATATCATGGGCCTCCAGGAGCGACTGGAAGTaGGGCTCCTTGAGTATCCCAACTAGCTCTGCCACA | + |
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Preference number: 6 (lower is better) Translates to: ATISWASRSDWK*GSLSIPTSSAT Trigger: TGTGGCAGAGCTAGTTGGGATACTCAAGGAGCCTCACTTCCAGTCGCTCCTGGAGGCCCATGATATTGTGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000036225.15 ENSMUST00000036236.15 ENSMUST00000166318.8 ENSMUST00000167628.2 ENSMUST00000204545.3 |
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| CDS TCA 72 bp | CATGGGCCTCCAGGAGCGACTGGAAGTGAGGCTCCTTaGGTATCCCAACTAGCTCTGCCACATTTTCATCCA | + |
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Preference number: 6 (lower is better) Translates to: HGPPGATGSEAP*VSQLALPHFHP Trigger: TGGATGAAAATGTGGCAGAGCTAGTTGGGATACTCAAGGAGCCTCACTTCCAGTCGCTCCTGGAGGCCCATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000036225.15 ENSMUST00000036236.15 ENSMUST00000166318.8 ENSMUST00000167628.2 ENSMUST00000204545.3 |
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| CDS TCA 72 bp | TTTTCTTCAAGTCAGAGTCCGTCAAAAGCTTGGTGGTaGTTCCCGCATCCACCACAGCCTTGTGCATGGCAC | + |
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Preference number: 6 (lower is better) Translates to: FSSSQSPSKAWW*FPHPPQPCAWH Trigger: GTGCCATGCACAAGGCTGTGGTGGATGCGGGAATCACCACCAAGCTTTTGACGGACTCTGACTTGAAGAAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000036225.15 ENSMUST00000036236.15 ENSMUST00000166318.8 ENSMUST00000204545.3 |
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| CDS CCA 72 bp | TGTGGGTTGACGTCCAAAATGCAAGTCCGCCCAGTCTaGACAACCTCGAGAATAGAGTCGATCTTGGTTCCA | + |
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Preference number: 6 (lower is better) Translates to: CGLTSKMQVRPV*TTSRIESILVP Trigger: TGGAACCAAGATCGACTCTATTCTCGAGGTTGTCCAGACTGGGCGGACTTGCATTTTGGACGTCAACCCACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000036225.15 ENSMUST00000036236.15 ENSMUST00000166318.8 ENSMUST00000204545.3 |
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| CDS CAA 72 bp | TCATTTCTGGGCTGGAAGGAGGCGAATCATAACACTTaGATGCCACAATATCATGGGCCTCCAGGAGCGACT | + |
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Preference number: 6 (lower is better) Translates to: SFLGWKEANHNT*MPQYHGPPGAT Trigger: AGTCGCTCCTGGAGGCCCATGATATTGTGGCATCAAAGTGTTATGATTCGCCTCCTTCCAGCCCAGAAATGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000036225.15 ENSMUST00000036236.15 ENSMUST00000166318.8 ENSMUST00000167628.2 ENSMUST00000204545.3 |
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| CDS CAA 90 bp | AAGGAATATTCATTTCTGGGCTGGAAGGAGGCGAATCATAACACTTaGATGCCACAATATCATGGGCCTCCAGGAGCGACTGGAAGTGAG | + |
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Preference number: 6 (lower is better) Translates to: KEYSFLGWKEANHNT*MPQYHGPPGATGSE Trigger: CTCACTTCCAGTCGCTCCTGGAGGCCCATGATATTGTGGCATCAAAGTGTTATGATTCGCCTCCTTCCAGCCCAGAAATGAATATTCCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000036225.15 ENSMUST00000036236.15 ENSMUST00000166318.8 ENSMUST00000167628.2 ENSMUST00000204545.3 |
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| CDS TCA 72 bp | ATTCAGAAGTCCTTAACACTTTCAGTGCTTGTGGGTTaGCGTCCAAAATGCAAGTCCGCCCAGTCTGGACAA | + |
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Preference number: 6 (lower is better) Translates to: IQKSLTLSVLVG*RPKCKSAQSGQ Trigger: TTGTCCAGACTGGGCGGACTTGCATTTTGGACGTCAACCCACAAGCACTGAAAGTGTTAAGGACTTCTGAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000036225.15 ENSMUST00000036236.15 ENSMUST00000166318.8 ENSMUST00000204545.3 |
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| CDS CAA 72 bp | GACTTCCTTAATGATATCTCCCACGTGAAGCAGACCTaGTCGATCTATCATTCCTCCATGAAGGATTCGGGC | + |
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Preference number: 6 (lower is better) Translates to: DFLNDISHVKQT*SIYHSSMKDSG Trigger: GCCCGAATCCTTCATGGAGGAATGATAGATCGACAAGGTCTGCTTCACGTGGGAGATATCATTAAGGAAGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000036225.15 ENSMUST00000036236.15 ENSMUST00000166318.8 ENSMUST00000167628.2 ENSMUST00000204545.3 |
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| CDS CAA 72 bp | AATTCAGAAGTCCTTAACACTTTCAGTGCTTGTGGGTaGACGTCCAAAATGCAAGTCCGCCCAGTCTGGACA | + |
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Preference number: 6 (lower is better) Translates to: NSEVLNTFSACG*TSKMQVRPVWT Trigger: TGTCCAGACTGGGCGGACTTGCATTTTGGACGTCAACCCACAAGCACTGAAAGTGTTAAGGACTTCTGAATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000036225.15 ENSMUST00000036236.15 ENSMUST00000166318.8 ENSMUST00000204545.3 |
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| CDS CAA 90 bp | ATGACCATTGACTTCCTTAATGATATCTCCCACGTGAAGCAGACCTaGTCGATCTATCATTCCTCCATGAAGGATTCGGGCGATTACCAG | + |
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Preference number: 6 (lower is better) Translates to: MTIDFLNDISHVKQT*SIYHSSMKDSGDYQ Trigger: CTGGTAATCGCCCGAATCCTTCATGGAGGAATGATAGATCGACAAGGTCTGCTTCACGTGGGAGATATCATTAAGGAAGTCAATGGTCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000036225.15 ENSMUST00000036236.15 ENSMUST00000166318.8 ENSMUST00000167628.2 ENSMUST00000204545.3 |
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| CDS TCA 72 bp | ACACCACACTTTCTCCAGGAGATAGGCCTTAGCAAGTaGCTTCACAATAGGATTCTCCATAATCCCCTTGAG | + |
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Preference number: 6 (lower is better) Translates to: TPHFLQEIGLSK*LHNRILHNPLE Trigger: CTCAAGGGGATTATGGAGAATCCTATTGTGAAGTCACTTGCTAAGGCCTATCTCCTGGAGAAAGTGTGGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171601.8 |
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| CDS CCA 72 bp | TTGGGACCCACTGTGGCTCCATCCTCAGTTTCTCAATaGCAGTTTGTAGTTTCTCAAAGGCTTTGTCTAGAT | + |
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Preference number: 6 (lower is better) Translates to: LGPTVAPSSVSQ*QFVVSQRLCLD Trigger: ATCTAGACAAAGCCTTTGAGAAACTACAAACTGCCATTGAGAAACTGAGGATGGAGCCACAGTGGGTCCCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000036225.15 ENSMUST00000036236.15 ENSMUST00000166318.8 ENSMUST00000204545.3 |
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| CDS CAA 72 bp | GCAAGTGACTTCACAATAGGATTCTCCATAATCCCCTaGAGGAAAATTAGGTCTATCTCCTCTGCTCCTGTA | + |
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Preference number: 6 (lower is better) Translates to: ASDFTIGFSIIP*RKIRSISSAPV Trigger: TACAGGAGCAGAGGAGATAGACCTAATTTTCCTCAAGGGGATTATGGAGAATCCTATTGTGAAGTCACTTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000036225.15 ENSMUST00000036236.15 ENSMUST00000166318.8 ENSMUST00000167628.2 ENSMUST00000171601.8 ENSMUST00000204545.3 |
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| CDS CAA 72 bp | GTGAATACCGAGAATACGGATGGCATCTACTGGCAATaGATTATTGAGAGAAGGAATATTCATTTCTGGGCT | + |
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Preference number: 6 (lower is better) Translates to: VNTENTDGIYWQ*IIERRNIHFWA Trigger: AGCCCAGAAATGAATATTCCTTCTCTCAATAATCAATTGCCAGTAGATGCCATCCGTATTCTCGGTATTCAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000036225.15 ENSMUST00000036236.15 ENSMUST00000166318.8 ENSMUST00000167628.2 ENSMUST00000204545.3 |
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| CDS GCA 72 bp | GTCATTTACGATGATCAAATCAAAGTAGTGGTTGTATaGTCTCTGAATTCGGGCACTTTCATCCACTGTTTT | + |
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Preference number: 6 (lower is better) Translates to: VIYDDQIKVVVV*SLNSGTFIHCF Trigger: AAAACAGTGGATGAAAGTGCCCGAATTCAGAGAGCATACAACCACTACTTTGATTTGATCATCGTAAATGAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000036225.15 ENSMUST00000036236.15 ENSMUST00000166318.8 ENSMUST00000204545.3 |
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| CDS CAA 72 bp | AGTTTCTCAATGGCAGTTTGTAGTTTCTCAAAGGCTTaGTCTAGATTGTCATTTACGATGATCAAATCAAAG | + |
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Preference number: 6 (lower is better) Translates to: SFSMAVCSFSKA*SRLSFTMIKSK Trigger: CTTTGATTTGATCATCGTAAATGACAATCTAGACAAAGCCTTTGAGAAACTACAAACTGCCATTGAGAAACT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000036225.15 ENSMUST00000036236.15 ENSMUST00000166318.8 ENSMUST00000204545.3 |
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