Pregenerated sensors for PALS1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021112Ensembl transcript IDs: ENSMUST00000082024.7, ENSMUST00000219197.2, ENSMUST00000219667.2
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GATCTCCAGAACTTCGTCTCCTTCGTGCAGGAGGCCACTCTTCTCTaGGGCGCCTCCTTTCACTATCCGGCTTATGATGACAGAATCCAT | + |
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Preference number: 5 (lower is better) Translates to: DLQNFVSFVQEATLL*GASFHYPAYDDRIH Trigger: ATGGATTCTGTCATCATAAGCCGGATAGTGAAAGGAGGCGCCGCAGAGAAGAGTGGCCTCCTGCACGAAGGAGACGAAGTTCTGGAGATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS TCA 90 bp | CGAAGTAGTGTCCGTTGTTCTGCTCCATCTCTCTCGTCTTCTCAATaGTCTCCCTTAATTCTTCAGGCTTTGGGTTCTTGCCTTCCTTGG | + |
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Preference number: 5 (lower is better) Translates to: RSSVRCSAPSLSSSQ*SPLILQALGSCLPW Trigger: CCAAGGAAGGCAAGAACCCAAAGCCTGAAGAATTAAGGGAGATCATTGAGAAGACGAGAGAGATGGAGCAGAACAACGGACACTACTTCG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS GCA 90 bp | TTCACCATGTTCAATGAACTTGCCAGCTGCTATGTCTGCTTCAAATaGTTGCCGAGAAACAAAGTGGTAATCTCTCCCAGCTACTTCATG | + |
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Preference number: 5 (lower is better) Translates to: FTMFNELASCYVCFK*LPRNKVVISPSYFM Trigger: CATGAAGTAGCTGGGAGAGATTACCACTTTGTTTCTCGGCAAGCATTTGAAGCAGACATAGCAGCTGGCAAGTTCATTGAACATGGTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS CCA 90 bp | AAGCGGTCTTTTTCCTTATTCATTAGTCTCTGGCGCAGTTCATTCTaGCCACAGTTCTGTGGACCGATCAAGATGATAGGTCTTTTCCTA | + |
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Preference number: 5 (lower is better) Translates to: KRSFSLFISLWRSSF*PQFCGPIKMIGLFL Trigger: TAGGAAAAGACCTATCATCTTGATCGGTCCACAGAACTGTGGCCAGAATGAACTGCGCCAGAGACTAATGAATAAGGAAAAAGACCGCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS GCA 90 bp | TTTCTCAAATTCACCATGTTCAATGAACTTGCCAGCTGCTATGTCTaGTTCAAATGCTTGCCGAGAAACAAAGTGGTAATCTCTCCCAGC | + |
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Preference number: 5 (lower is better) Translates to: FLKFTMFNELASCYV*FKCLPRNKVVISPS Trigger: GCTGGGAGAGATTACCACTTTGTTTCTCGGCAAGCATTTGAAGCAGACATAGCAGCTGGCAAGTTCATTGAACATGGTGAATTTGAGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS TCA 90 bp | ATATGTGGAGCATTCAACAAGGCAGTTAGTTCTTGTCCTTCCTTCTaGTGGACTGGCTTTAAGACAGTTTGTACCTCTTGTACAAGGTCT | + |
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Preference number: 5 (lower is better) Translates to: ICGAFNKAVSSCPSF*WTGFKTVCTSCTRS Trigger: AGACCTTGTACAAGAGGTACAAACTGTCTTAAAGCCAGTCCATCAGAAGGAAGGACAAGAACTAACTGCCTTGTTGAATGCTCCACATAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000082024.7 ENSMUST00000219197.2 |
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| CDS TCA 90 bp | TTCACATGGATTACAGTTTCTTTGGCAGGAGGGGGCTTGATCTGTTaGCTAGGAATCAGAACAAATGTCAAAGTACCATGCATATCAGAC | + |
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Preference number: 5 (lower is better) Translates to: FTWITVSLAGGGLIC*LGIRTNVKVPCISD Trigger: GTCTGATATGCATGGTACTTTGACATTTGTTCTGATTCCTAGTCAACAGATCAAGCCCCCTCCTGCCAAAGAAACTGTAATCCATGTGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS TCA 90 bp | CTGTTTTGTACAAGCTGTAAAAGCAGTGAGATATCCTCCTGGCTCTaGGAATCAACCAAAGTGTGTTGGATGTGTTTAAGTGAAGAGAAC | + |
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Preference number: 5 (lower is better) Translates to: LFCTSCKSSEISSWL*ESTKVCWMCLSEEN Trigger: GTTCTCTTCACTTAAACACATCCAACACACTTTGGTTGATTCTCAGAGCCAGGAGGATATCTCACTGCTTTTACAGCTTGTACAAAACAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000082024.7 ENSMUST00000219197.2 |
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| CDS TCA 90 bp | TCAAGGACTGTGTGCGAAGACTTAAGAGACATATCTTGCCAGAGTTaGTTACTTGTCGTACAGAGTCTATGCTGGTTCCATACAGATTTT | + |
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Preference number: 5 (lower is better) Translates to: SRTVCEDLRDISCQS*LLVVQSLCWFHTDF Trigger: AAAATCTGTATGGAACCAGCATAGACTCTGTACGACAAGTAATCAACTCTGGCAAGATATGTCTCTTAAGTCTTCGCACACAGTCCTTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS TCA 90 bp | TTTGTTAATGAGCCTAAGCAATTCCTGATAGGCTTTATCAAGATCTaGATTCACAATTGCAGTGTCGAAGTAGTGTCCGTTGTTCTGCTC | + |
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Preference number: 5 (lower is better) Translates to: FVNEPKQFLIGFIKI*IHNCSVEVVSVVLL Trigger: GAGCAGAACAACGGACACTACTTCGACACTGCAATTGTGAATTCAGATCTTGATAAAGCCTATCAGGAATTGCTTAGGCTCATTAACAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS TCA 90 bp | TTGCTCATGTGTACTGTGACAGCATTGTGTATCTTGAATGCATTCTaGAAATCTCTGTTTTGTACAAGCTGTAAAAGCAGTGAGATATCC | + |
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Preference number: 5 (lower is better) Translates to: LLMCTVTALCILNAF*KSLFCTSCKSSEIS Trigger: GGATATCTCACTGCTTTTACAGCTTGTACAAAACAGAGATTTTCAGAATGCATTCAAGATACACAATGCTGTCACAGTACACATGAGCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000082024.7 ENSMUST00000219197.2 |
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| CDS TCA 90 bp | TCCGTGTCAAATATAGGGTTATCTATTCCAGTCTTTGGAGGAATTTaGGCTAGTTTCTTAAGTCTCATGGAAGAATTTAGGTCAAGTTCT | + |
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Preference number: 5 (lower is better) Translates to: SVSNIGLSIPVFGGI*ASFLSLMEEFRSSS Trigger: AGAACTTGACCTAAATTCTTCCATGAGACTTAAGAAACTAGCTCAAATTCCTCCAAAGACTGGAATAGATAACCCTATATTTGACACGGA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000082024.7 ENSMUST00000219197.2 ENSMUST00000219667.2 |
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| CDS GCA 72 bp | TCAATGCCGTTGATCTCCAGAACTTCGTCTCCTTCGTaGAGGAGGCCACTCTTCTCTGCGGCGCCTCCTTTC | + |
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Preference number: 6 (lower is better) Translates to: SMPLISRTSSPS*RRPLFSAAPPF Trigger: GAAAGGAGGCGCCGCAGAGAAGAGTGGCCTCCTGCACGAAGGAGACGAAGTTCTGGAGATCAACGGCATTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS GCA 72 bp | AACTTCGTCTCCTTCGTGCAGGAGGCCACTCTTCTCTaGGGCGCCTCCTTTCACTATCCGGCTTATGATGAC | + |
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Preference number: 6 (lower is better) Translates to: NFVSFVQEATLL*GASFHYPAYDD Trigger: GTCATCATAAGCCGGATAGTGAAAGGAGGCGCCGCAGAGAAGAGTGGCCTCCTGCACGAAGGAGACGAAGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS CCA 72 bp | GCTCTAACTGTGCACTTCTTCGCACTGGCATCATTCTaGTGCCCAAATCTCCAGGGCAGTCAACAGCCATCT | + |
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Preference number: 6 (lower is better) Translates to: ALTVHFFALASF*CPNLQGSQQPS Trigger: AGATGGCTGTTGACTGCCCTGGAGATTTGGGCACCAGAATGATGCCAGTGCGAAGAAGTGCACAGTTAGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000082024.7 ENSMUST00000219197.2 |
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| CDS CAA 72 bp | ACCTCATTGACATCCTTGCCCCGGATTTCAATGCCGTaGATCTCCAGAACTTCGTCTCCTTCGTGCAGGAGG | + |
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Preference number: 6 (lower is better) Translates to: TSLTSLPRISMP*ISRTSSPSCRR Trigger: CCTCCTGCACGAAGGAGACGAAGTTCTGGAGATCAACGGCATTGAAATCCGGGGCAAGGATGTCAATGAGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS CAA 90 bp | AAGTCAAAAACCTCATTGACATCCTTGCCCCGGATTTCAATGCCGTaGATCTCCAGAACTTCGTCTCCTTCGTGCAGGAGGCCACTCTTC | + |
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Preference number: 6 (lower is better) Translates to: KSKTSLTSLPRISMP*ISRTSSPSCRRPLF Trigger: GAAGAGTGGCCTCCTGCACGAAGGAGACGAAGTTCTGGAGATCAACGGCATTGAAATCCGGGGCAAGGATGTCAATGAGGTTTTTGACTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS GCA 72 bp | ACTCTCTCATCTGTAATGGGCTCTAGCTGCATTTCCTaGTCAGCAACCTTATCATGGGCCAGTAAAAGTGCC | + |
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Preference number: 6 (lower is better) Translates to: TLSSVMGSSCIS*SATLSWASKSA Trigger: GGCACTTTTACTGGCCCATGATAAGGTTGCTGAGCAGGAAATGCAGCTAGAGCCCATTACAGATGAGAGAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000082024.7 ENSMUST00000219197.2 |
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| CDS CAA 72 bp | TGTACATTGGCGATAAGAGGAAACGGAGGGCTGGCCTaGCTCATGTGTACTGTGACAGCATTGTGTATCTTG | + |
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Preference number: 6 (lower is better) Translates to: CTLAIRGNGGLA*LMCTVTALCIL Trigger: CAAGATACACAATGCTGTCACAGTACACATGAGCAAGGCCAGCCCTCCGTTTCCTCTTATCGCCAATGTACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000082024.7 ENSMUST00000219197.2 |
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| CDS CAA 72 bp | AAGACAGTTTGTACCTCTTGTACAAGGTCTTGTACATaGGCGATAAGAGGAAACGGAGGGCTGGCCTTGCTC | + |
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Preference number: 6 (lower is better) Translates to: KTVCTSCTRSCT*AIRGNGGLALL Trigger: GAGCAAGGCCAGCCCTCCGTTTCCTCTTATCGCCAATGTACAAGACCTTGTACAAGAGGTACAAACTGTCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000082024.7 ENSMUST00000219197.2 |
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| CDS CAA 90 bp | ACAAGGTCTTGTACATTGGCGATAAGAGGAAACGGAGGGCTGGCCTaGCTCATGTGTACTGTGACAGCATTGTGTATCTTGAATGCATTC | + |
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Preference number: 6 (lower is better) Translates to: TRSCTLAIRGNGGLA*LMCTVTALCILNAF Trigger: GAATGCATTCAAGATACACAATGCTGTCACAGTACACATGAGCAAGGCCAGCCCTCCGTTTCCTCTTATCGCCAATGTACAAGACCTTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000082024.7 ENSMUST00000219197.2 |
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| CDS CAA 90 bp | ACTGGCTTTAAGACAGTTTGTACCTCTTGTACAAGGTCTTGTACATaGGCGATAAGAGGAAACGGAGGGCTGGCCTTGCTCATGTGTACT | + |
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Preference number: 6 (lower is better) Translates to: TGFKTVCTSCTRSCT*AIRGNGGLALLMCT Trigger: AGTACACATGAGCAAGGCCAGCCCTCCGTTTCCTCTTATCGCCAATGTACAAGACCTTGTACAAGAGGTACAAACTGTCTTAAAGCCAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000082024.7 ENSMUST00000219197.2 |
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| CDS CAA 90 bp | CGGAGGGTCTTCAAGGACTGTGTGCGAAGACTTAAGAGACATATCTaGCCAGAGTTGATTACTTGTCGTACAGAGTCTATGCTGGTTCCA | + |
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Preference number: 6 (lower is better) Translates to: RRVFKDCVRRLKRHI*PELITCRTESMLVP Trigger: TGGAACCAGCATAGACTCTGTACGACAAGTAATCAACTCTGGCAAGATATGTCTCTTAAGTCTTCGCACACAGTCCTTGAAGACCCTCCG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS TCA 72 bp | GTCCGTTGTTCTGCTCCATCTCTCTCGTCTTCTCAATaGTCTCCCTTAATTCTTCAGGCTTTGGGTTCTTGC | + |
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Preference number: 6 (lower is better) Translates to: VRCSAPSLSSSQ*SPLILQALGSC Trigger: GCAAGAACCCAAAGCCTGAAGAATTAAGGGAGATCATTGAGAAGACGAGAGAGATGGAGCAGAACAACGGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS CAA 72 bp | TCAATGATCTCCCTTAATTCTTCAGGCTTTGGGTTCTaGCCTTCCTTGGCTAACAACGCCCGAAGTCTCTCT | + |
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Preference number: 6 (lower is better) Translates to: SMISLNSSGFGF*PSLANNARSLS Trigger: AGAGAGACTTCGGGCGTTGTTAGCCAAGGAAGGCAAGAACCCAAAGCCTGAAGAATTAAGGGAGATCATTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS CAA 90 bp | GTACCATGCATATCAGACAACAAGTCAAAAACCTCATTGACATCCTaGCCCCGGATTTCAATGCCGTTGATCTCCAGAACTTCGTCTCCT | + |
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Preference number: 6 (lower is better) Translates to: VPCISDNKSKTSLTS*PRISMPLISRTSSP Trigger: AGGAGACGAAGTTCTGGAGATCAACGGCATTGAAATCCGGGGCAAGGATGTCAATGAGGTTTTTGACTTGTTGTCTGATATGCATGGTAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS CAA 90 bp | ACCATGTTCAATGAACTTGCCAGCTGCTATGTCTGCTTCAAATGCTaGCCGAGAAACAAAGTGGTAATCTCTCCCAGCTACTTCATGGTC | + |
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Preference number: 6 (lower is better) Translates to: TMFNELASCYVCFKC*PRNKVVISPSYFMV Trigger: GACCATGAAGTAGCTGGGAGAGATTACCACTTTGTTTCTCGGCAAGCATTTGAAGCAGACATAGCAGCTGGCAAGTTCATTGAACATGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS GCA 72 bp | TTTGCTTCATGGCTTCCCTTTGCTGCTGAAAGCTTTTaGCTGGAACAAGTCCAGCTAGAGGCTGATTATCTT | + |
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Preference number: 6 (lower is better) Translates to: FASWLPFAAESF*LEQVQLEADYL Trigger: AAGATAATCAGCCTCTAGCTGGACTTGTTCCAGGCAAAAGCTTTCAGCAGCAAAGGGAAGCCATGAAGCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS GCA 72 bp | TTCAATGAACTTGCCAGCTGCTATGTCTGCTTCAAATaGTTGCCGAGAAACAAAGTGGTAATCTCTCCCAGC | + |
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Preference number: 6 (lower is better) Translates to: FNELASCYVCFK*LPRNKVVISPS Trigger: GCTGGGAGAGATTACCACTTTGTTTCTCGGCAAGCATTTGAAGCAGACATAGCAGCTGGCAAGTTCATTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS CAA 72 bp | AATGAACTTGCCAGCTGCTATGTCTGCTTCAAATGCTaGCCGAGAAACAAAGTGGTAATCTCTCCCAGCTAC | + |
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Preference number: 6 (lower is better) Translates to: NELASCYVCFKC*PRNKVVISPSY Trigger: GTAGCTGGGAGAGATTACCACTTTGTTTCTCGGCAAGCATTTGAAGCAGACATAGCAGCTGGCAAGTTCATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS CCA 72 bp | TTTTCCTTATTCATTAGTCTCTGGCGCAGTTCATTCTaGCCACAGTTCTGTGGACCGATCAAGATGATAGGT | + |
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Preference number: 6 (lower is better) Translates to: FSLFISLWRSSF*PQFCGPIKMIG Trigger: ACCTATCATCTTGATCGGTCCACAGAACTGTGGCCAGAATGAACTGCGCCAGAGACTAATGAATAAGGAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS CAA 72 bp | GTACCATGCATATCAGACAACAAGTCAAAAACCTCATaGACATCCTTGCCCCGGATTTCAATGCCGTTGATC | + |
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Preference number: 6 (lower is better) Translates to: VPCISDNKSKTS*TSLPRISMPLI Trigger: GATCAACGGCATTGAAATCCGGGGCAAGGATGTCAATGAGGTTTTTGACTTGTTGTCTGATATGCATGGTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS TCA 72 bp | ATTACAGTTTCTTTGGCAGGAGGGGGCTTGATCTGTTaGCTAGGAATCAGAACAAATGTCAAAGTACCATGC | + |
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Preference number: 6 (lower is better) Translates to: ITVSLAGGGLIC*LGIRTNVKVPC Trigger: GCATGGTACTTTGACATTTGTTCTGATTCCTAGTCAACAGATCAAGCCCCCTCCTGCCAAAGAAACTGTAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS TCA 72 bp | GTGTGCGAAGACTTAAGAGACATATCTTGCCAGAGTTaGTTACTTGTCGTACAGAGTCTATGCTGGTTCCAT | + |
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Preference number: 6 (lower is better) Translates to: VCEDLRDISCQS*LLVVQSLCWFH Trigger: ATGGAACCAGCATAGACTCTGTACGACAAGTAATCAACTCTGGCAAGATATGTCTCTTAAGTCTTCGCACAC 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS GCA 72 bp | TTCACCATGTTCAATGAACTTGCCAGCTGCTATGTCTaGTTCAAATGCTTGCCGAGAAACAAAGTGGTAATC | + |
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Preference number: 6 (lower is better) Translates to: FTMFNELASCYV*FKCLPRNKVVI Trigger: GATTACCACTTTGTTTCTCGGCAAGCATTTGAAGCAGACATAGCAGCTGGCAAGTTCATTGAACATGGTGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS CAA 72 bp | ATATCAGACAACAAGTCAAAAACCTCATTGACATCCTaGCCCCGGATTTCAATGCCGTTGATCTCCAGAACT | + |
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Preference number: 6 (lower is better) Translates to: ISDNKSKTSLTS*PRISMPLISRT Trigger: AGTTCTGGAGATCAACGGCATTGAAATCCGGGGCAAGGATGTCAATGAGGTTTTTGACTTGTTGTCTGATAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS CAA 72 bp | TGTGTGCGAAGACTTAAGAGACATATCTTGCCAGAGTaGATTACTTGTCGTACAGAGTCTATGCTGGTTCCA | + |
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Preference number: 6 (lower is better) Translates to: CVRRLKRHILPE*ITCRTESMLVP Trigger: TGGAACCAGCATAGACTCTGTACGACAAGTAATCAACTCTGGCAAGATATGTCTCTTAAGTCTTCGCACACA 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS TCA 72 bp | ACAAGCTGTAAAAGCAGTGAGATATCCTCCTGGCTCTaGGAATCAACCAAAGTGTGTTGGATGTGTTTAAGT | + |
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Preference number: 6 (lower is better) Translates to: TSCKSSEISSWL*ESTKVCWMCLS Trigger: ACTTAAACACATCCAACACACTTTGGTTGATTCTCAGAGCCAGGAGGATATCTCACTGCTTTTACAGCTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000082024.7 ENSMUST00000219197.2 |
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| CDS TCA 72 bp | GAGCCTAAGCAATTCCTGATAGGCTTTATCAAGATCTaGATTCACAATTGCAGTGTCGAAGTAGTGTCCGTT | + |
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Preference number: 6 (lower is better) Translates to: EPKQFLIGFIKI*IHNCSVEVVSV Trigger: AACGGACACTACTTCGACACTGCAATTGTGAATTCAGATCTTGATAAAGCCTATCAGGAATTGCTTAGGCTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS GCA 72 bp | TTCTTAAGTCTCATGGAAGAATTTAGGTCAAGTTCTTaGTTTTTCCCTTCCTCTTCGCGCCTACGTCTCATA | + |
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Preference number: 6 (lower is better) Translates to: FLSLMEEFRSSS*FFPSSSRLRLI Trigger: TATGAGACGTAGGCGCGAAGAGGAAGGGAAAAAGCAAGAACTTGACCTAAATTCTTCCATGAGACTTAAGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000082024.7 ENSMUST00000219197.2 ENSMUST00000219667.2 |
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| CDS CAA 72 bp | TTCAAGGACTGTGTGCGAAGACTTAAGAGACATATCTaGCCAGAGTTGATTACTTGTCGTACAGAGTCTATG | + |
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Preference number: 6 (lower is better) Translates to: FKDCVRRLKRHI*PELITCRTESM Trigger: CATAGACTCTGTACGACAAGTAATCAACTCTGGCAAGATATGTCTCTTAAGTCTTCGCACACAGTCCTTGAA 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS CAA 72 bp | ATTCCTGATAGGCTTTATCAAGATCTGAATTCACAATaGCAGTGTCGAAGTAGTGTCCGTTGTTCTGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: IPDRLYQDLNSQ*QCRSSVRCSAP Trigger: TGGAGCAGAACAACGGACACTACTTCGACACTGCAATTGTGAATTCAGATCTTGATAAAGCCTATCAGGAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS CAA 90 bp | TTTCACATGGATTACAGTTTCTTTGGCAGGAGGGGGCTTGATCTGTaGACTAGGAATCAGAACAAATGTCAAAGTACCATGCATATCAGA | + |
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Preference number: 6 (lower is better) Translates to: FHMDYSFFGRRGLDL*TRNQNKCQSTMHIR Trigger: TCTGATATGCATGGTACTTTGACATTTGTTCTGATTCCTAGTCAACAGATCAAGCCCCCTCCTGCCAAAGAAACTGTAATCCATGTGAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS CAA 90 bp | TTCAAGGACTGTGTGCGAAGACTTAAGAGACATATCTTGCCAGAGTaGATTACTTGTCGTACAGAGTCTATGCTGGTTCCATACAGATTT | + |
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Preference number: 6 (lower is better) Translates to: FKDCVRRLKRHILPE*ITCRTESMLVPYRF Trigger: AAATCTGTATGGAACCAGCATAGACTCTGTACGACAAGTAATCAACTCTGGCAAGATATGTCTCTTAAGTCTTCGCACACAGTCCTTGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS GCA 72 bp | TTTCTCAAATTCACCATGTTCAATGAACTTGCCAGCTaGTATGTCTGCTTCAAATGCTTGCCGAGAAACAAA | + |
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Preference number: 6 (lower is better) Translates to: FLKFTMFNELAS*YVCFKCLPRNK Trigger: TTTGTTTCTCGGCAAGCATTTGAAGCAGACATAGCAGCTGGCAAGTTCATTGAACATGGTGAATTTGAGAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082024.7 |
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| CDS CCA 72 bp | TACGAACTGTGGCACCCTAAAAACACCCAATATCAATaGAATATCCCGAGCCTTTTCTATACGAACTATTTT | + |
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Preference number: 6 (lower is better) Translates to: YELWHPKNTQYQ*NIPSLFYTNYF Trigger: AAAATAGTTCGTATAGAAAAGGCTCGGGATATTCCATTGATATTGGGTGTTTTTAGGGTGCCACAGTTCGTA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000219197.2 |
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