Pregenerated sensors for PALMD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033377Ensembl transcript IDs: ENSMUST00000040097.14, ENSMUST00000119557.8, ENSMUST00000143611.2
Found 111 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTTCGGATCAGCGTTAATAAAAGCTATCCAGTGTGTATTAGTTTATaGGGTGGTCACAAACACCGGAAGTCAGAGCGTTCATTAGCACGG | + |
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Preference number: 1 (lower is better) Translates to: LRISVNKSYPVCISL*GGHKHRKSERSLAR Trigger: CCGTGCTAATGAACGCTCTGACTTCCGGTGTTTGTGACCACCTCATAAACTAATACACACTGGATAGCTTTTATTAACGCTGATCCGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| 3UTR TCA 90 bp | AGCAAAACAAGATTGGGCTTATGGCTCGATGAGGGAGAAAGATCTTaGATTGCAGAGGTCCTAACCCACTTCTATAAAACTACCAGGTTC | + |
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Preference number: 1 (lower is better) Translates to: SKTRLGLWLDEGERS*IAEVLTHFYKTTRF Trigger: GAACCTGGTAGTTTTATAGAAGTGGGTTAGGACCTCTGCAATTCAAGATCTTTCTCCCTCATCGAGCCATAAGCCCAATCTTGTTTTGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| 3UTR-3UTR GCA 90 bp | AAACAAGATTGGGCTTATGGCTCGATGAGGGAGAAAGATCTTGAATTGCAGAGGGAATACATATGGCATTaGTCCCTCCCAGAAGACACA | + |
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Preference number: 2 (lower is better) Translates to: KQDWAYGSMREKDLELQREYIWH*SLPEDT Trigger: TGTGTCTTCTGGGAGGGAGCAATGCCATATGTATTC...CCTCTGCAATTCAAGATCTTTCTCCCTCATCGAGCCATAAGCCCAATCTTGTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| 3UTR-3UTR CAA 90 bp | AAACAAGATTGGGCTTATGGCTCGATGAGGGAGAAAGATCTTGAATTGCAGAGGGTGATAACAAGGAATTaGAAATCGAGGAGCTGTCAG | + |
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Preference number: 3 (lower is better) Translates to: KQDWAYGSMREKDLELQRVITRN*KSRSCQ Trigger: CTGACAGCTCCTCGATTTCAAATTCCTTGTTATCAC...CCTCTGCAATTCAAGATCTTTCTCCCTCATCGAGCCATAAGCCCAATCTTGTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| 3UTR TCA 72 bp | AGATTGGGCTTATGGCTCGATGAGGGAGAAAGATCTTaGATTGCAGAGGTCCTAACCCACTTCTATAAAACT | + |
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Preference number: 3 (lower is better) Translates to: RLGLWLDEGERS*IAEVLTHFYKT Trigger: AGTTTTATAGAAGTGGGTTAGGACCTCTGCAATTCAAGATCTTTCTCCCTCATCGAGCCATAAGCCCAATCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| 3UTR TCA 72 bp | AGCGTTAATAAAAGCTATCCAGTGTGTATTAGTTTATaGGGTGGTCACAAACACCGGAAGTCAGAGCGTTCA | + |
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Preference number: 3 (lower is better) Translates to: SVNKSYPVCISL*GGHKHRKSERS Trigger: TGAACGCTCTGACTTCCGGTGTTTGTGACCACCTCATAAACTAATACACACTGGATAGCTTTTATTAACGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| 3UTR GCA 72 bp | AAGACACATACATCTCCAGTAGCTAGAGGCAGCCAATaGAATATTAAAACAAAGCAAGACGGAGTTTCCACT | + |
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Preference number: 3 (lower is better) Translates to: KTHTSPVARGSQ*NIKTKQDGVST Trigger: AGTGGAAACTCCGTCTTGCTTTGTTTTAATATTGCATTGGCTGCCTCTAGCTACTGGAGATGTATGTGTCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| 3UTR GCA 72 bp | ACAGAGAGGCACAGGAAAGTAGTTGTCATTGGATTCTaGTGTGAAAAGTATGTTTCTGATGATCAGCACATT | + |
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Preference number: 3 (lower is better) Translates to: TERHRKVVVIGF*CEKYVSDDQHI Trigger: AATGTGCTGATCATCAGAAACATACTTTTCACAGCAGAATCCAATGACAACTACTTTCCTGTGCCTCTCTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| 3UTR CCA 72 bp | CACTTCTATAAAACTACCAGGTTCAACTTGCTCAGATaGCTGGTACTTAATAGCTATTGCTTTTTAATGATC | + |
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Preference number: 3 (lower is better) Translates to: HFYKTTRFNLLR*LVLNSYCFLMI Trigger: GATCATTAAAAAGCAATAGCTATTAAGTACCAGCCATCTGAGCAAGTTGAACCTGGTAGTTTTATAGAAGTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| 3UTR TCA 72 bp | TTCATTTTTCTATCAGTGATAATAGGTCTCGATATCTaGGTGATAACAAGGAATTTGAAATCGAGGAGCTGT | + |
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Preference number: 3 (lower is better) Translates to: FIFLSVIIGLDI*VITRNLKSRSC Trigger: ACAGCTCCTCGATTTCAAATTCCTTGTTATCACTCAGATATCGAGACCTATTATCACTGATAGAAAAATGAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR CCA 90 bp | CCAGTAGCTAGAGGCAGCCAATGCAATATTAAAACAAAGCAAGACGGAGTTTCCCCCGTCTCCAGCTACTaGGACATCCAGGGGAGAGTG | + |
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Preference number: 4 (lower is better) Translates to: PVARGSQCNIKTKQDGVSPVSSY*DIQGRV Trigger: CACTCTCCCCTGGATGTCCCAGTAGCTGGAGACGGG...GGAAACTCCGTCTTGCTTTGTTTTAATATTGCATTGGCTGCCTCTAGCTACTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR CCA 90 bp | AAACAAGATTGGGCTTATGGCTCGATGAGGGAGAAAGATCTTGAATTGCAGAGGCAGGGCTTGCTCTGCTaGGGCTCAGTTCCATCCTTG | + |
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Preference number: 4 (lower is better) Translates to: KQDWAYGSMREKDLELQRQGLLC*GSVPSL Trigger: CAAGGATGGAACTGAGCCCCAGCAGAGCAAGCCCTG...CCTCTGCAATTCAAGATCTTTCTCCCTCATCGAGCCATAAGCCCAATCTTGTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR CCA 90 bp | CAACCCCAATGTGAATACATATGGCATTGCTCCCTCCCAGAAGACACATACATCTACGGGATGGTAGGATaGCCTCTCGGTTTGTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: QPQCEYIWHCSLPEDTYIYGMVG*PLGLSF Trigger: GAAGGACAAACCGAGAGGCCATCCTACCATCCCGTA...GATGTATGTGTCTTCTGGGAGGGAGCAATGCCATATGTATTCACATTGGGGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR TCA 90 bp | CAACCCCAATGTGAATACATATGGCATTGCTCCCTCCCAGAAGACACATACATCTGCCTCTTCGTTGGCTaGGATTTGCAGTTCAGCCTT | + |
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Preference number: 4 (lower is better) Translates to: QPQCEYIWHCSLPEDTYICLFVG*DLQFSL Trigger: AAGGCTGAACTGCAAATCTCAGCCAACGAAGAGGCA...GATGTATGTGTCTTCTGGGAGGGAGCAATGCCATATGTATTCACATTGGGGTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR TCA 90 bp | CCAGTAGCTAGAGGCAGCCAATGCAATATTAAAACAAAGCAAGACGGAGTTTCCTTGGTCCAGGGCTTATaGCTCTTTCTCTCTGTGGGG | + |
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Preference number: 4 (lower is better) Translates to: PVARGSQCNIKTKQDGVSLVQGL*LFLSVG Trigger: CCCCACAGAGAGAAAGAGTCATAAGCCCTGGACCAA...GGAAACTCCGTCTTGCTTTGTTTTAATATTGCATTGGCTGCCTCTAGCTACTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR TCA 90 bp | AAACAAGATTGGGCTTATGGCTCGATGAGGGAGAAAGATCTTGAATTGCAGAGGGTTGCTTCTCCTCTCTaGGAGCCCGTCGGTCATATT | + |
|
Preference number: 4 (lower is better) Translates to: KQDWAYGSMREKDLELQRVASPL*EPVGHI Trigger: AATATGACCGACGGGCTCTCAGAGAGGAGAAGCAAC...CCTCTGCAATTCAAGATCTTTCTCCCTCATCGAGCCATAAGCCCAATCTTGTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR GCA 90 bp | CCAGTAGCTAGAGGCAGCCAATGCAATATTAAAACAAAGCAAGACGGAGTTTCCCGTGTTCTTTTCCACTaGCGATTCCATCCAGGAGCC | + |
|
Preference number: 4 (lower is better) Translates to: PVARGSQCNIKTKQDGVSRVLFH*RFHPGA Trigger: GGCTCCTGGATGGAATCGGCAGTGGAAAAGAACACG...GGAAACTCCGTCTTGCTTTGTTTTAATATTGCATTGGCTGCCTCTAGCTACTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR GCA 90 bp | ATCCAGTGTGTATTAGTTTATGAGGTGGTCACAAACACCGGAAGTCAGAGCGTTAGCCTGAGGATGCTTTaGTCTAGAACCTGGGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: IQCVLVYEVVTNTGSQSVSLRML*SRTWVW Trigger: CCAGACCCAGGTTCTAGAGCAAAGCATCCTCAGGCT...AACGCTCTGACTTCCGGTGTTTGTGACCACCTCATAAACTAATACACACTGGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR GCA 90 bp | CAACCCCAATGTGAATACATATGGCATTGCTCCCTCCCAGAAGACACATACATCGTTCGTTTTGCCTGTTaGTGGATTCTTCCCAAGGGC | + |
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Preference number: 4 (lower is better) Translates to: QPQCEYIWHCSLPEDTYIVRFAC*WILPKG Trigger: GCCCTTGGGAAGAATCCAGCAACAGGCAAAACGAAC...GATGTATGTGTCTTCTGGGAGGGAGCAATGCCATATGTATTCACATTGGGGTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR CCA 90 bp | AAACAAGATTGGGCTTATGGCTCGATGAGGGAGAAAGATCTTGAATTGCAGAGGTTGTCAGTGATGGCCTaGAGTCTTCCCTTCACCAGC | + |
|
Preference number: 4 (lower is better) Translates to: KQDWAYGSMREKDLELQRLSVMA*SLPFTS Trigger: GCTGGTGAAGGGAAGACTCCAGGCCATCACTGACAA...CCTCTGCAATTCAAGATCTTTCTCCCTCATCGAGCCATAAGCCCAATCTTGTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR CCA 90 bp | ATCCAGTGTGTATTAGTTTATGAGGTGGTCACAAACACCGGAAGTCAGAGCGTTCTTTGCTCTAGAACCTaGGTCTGGTGCTGGTCTTGC | + |
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Preference number: 4 (lower is better) Translates to: IQCVLVYEVVTNTGSQSVLCSRT*VWCWSC Trigger: GCAAGACCAGCACCAGACCCAGGTTCTAGAGCAAAG...AACGCTCTGACTTCCGGTGTTTGTGACCACCTCATAAACTAATACACACTGGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR CCA 90 bp | CAACCCCAATGTGAATACATATGGCATTGCTCCCTCCCAGAAGACACATACATCCGTTTTGCCTGTTGCTaGATTCTTCCCAAGGGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: QPQCEYIWHCSLPEDTYIRFACC*ILPKGL Trigger: CAAGCCCTTGGGAAGAATCCAGCAACAGGCAAAACG...GATGTATGTGTCTTCTGGGAGGGAGCAATGCCATATGTATTCACATTGGGGTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR CCA 90 bp | CCAGTAGCTAGAGGCAGCCAATGCAATATTAAAACAAAGCAAGACGGAGTTTCCGAAGTGGGGTTGGTTTaGGTGGCTGGTAAACCTGAC | + |
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Preference number: 4 (lower is better) Translates to: PVARGSQCNIKTKQDGVSEVGLV*VAGKPD Trigger: GTCAGGTTTACCAGCCACCCAAACCAACCCCACTTC...GGAAACTCCGTCTTGCTTTGTTTTAATATTGCATTGGCTGCCTCTAGCTACTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR CCA 90 bp | CAACCCCAATGTGAATACATATGGCATTGCTCCCTCCCAGAAGACACATACATCCTCTTTTGTTGGGTGTaGACCATCTCTTCCACTTGC | + |
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Preference number: 4 (lower is better) Translates to: QPQCEYIWHCSLPEDTYILFCWV*TISSTC Trigger: GCAAGTGGAAGAGATGGTCCACACCCAACAAAAGAG...GATGTATGTGTCTTCTGGGAGGGAGCAATGCCATATGTATTCACATTGGGGTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR CCA 90 bp | ATCCAGTGTGTATTAGTTTATGAGGTGGTCACAAACACCGGAAGTCAGAGCGTTTCTTCTGTCTCCTCCTaGCAAGTGGGTGAAGAACAC | + |
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Preference number: 4 (lower is better) Translates to: IQCVLVYEVVTNTGSQSVSSVSS*QVGEEH Trigger: GTGTTCTTCACCCACTTGCCAGGAGGAGACAGAAGA...AACGCTCTGACTTCCGGTGTTTGTGACCACCTCATAAACTAATACACACTGGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR GCA 90 bp | ATCCAGTGTGTATTAGTTTATGAGGTGGTCACAAACACCGGAAGTCAGAGCGTTCCGTCGGTCATATTGTaGGCAGATTCATTTGCATGG | + |
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Preference number: 4 (lower is better) Translates to: IQCVLVYEVVTNTGSQSVPSVIL*ADSFAW Trigger: CCATGCAAATGAATCTGCGCACAATATGACCGACGG...AACGCTCTGACTTCCGGTGTTTGTGACCACCTCATAAACTAATACACACTGGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR GCA 90 bp | CCAGTAGCTAGAGGCAGCCAATGCAATATTAAAACAAAGCAAGACGGAGTTTCCTTCTTCCCAAGGGCTTaGCATCCTCTTTTGTTGGGT | + |
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Preference number: 4 (lower is better) Translates to: PVARGSQCNIKTKQDGVSFFPRA*HPLLLG Trigger: ACCCAACAAAAGAGGATGGCAAGCCCTTGGGAAGAA...GGAAACTCCGTCTTGCTTTGTTTTAATATTGCATTGGCTGCCTCTAGCTACTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR TCA 90 bp | ATCCAGTGTGTATTAGTTTATGAGGTGGTCACAAACACCGGAAGTCAGAGCGTTTGGTGCTGGTCTTGCTaGTTTTGCTTCTTCATCTCT | + |
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Preference number: 4 (lower is better) Translates to: IQCVLVYEVVTNTGSQSVWCWSC*FCFFIS Trigger: AGAGATGAAGAAGCAAAATCAGCAAGACCAGCACCA...AACGCTCTGACTTCCGGTGTTTGTGACCACCTCATAAACTAATACACACTGGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR TCA 90 bp | CCAGTAGCTAGAGGCAGCCAATGCAATATTAAAACAAAGCAAGACGGAGTTTCCTCTCTTTCTCAAGCCTaGGGATGCTTTGCTCTAGAA | + |
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Preference number: 4 (lower is better) Translates to: PVARGSQCNIKTKQDGVSSLSQA*GCFALE Trigger: TTCTAGAGCAAAGCATCCTCAGGCTTGAGAAAGAGA...GGAAACTCCGTCTTGCTTTGTTTTAATATTGCATTGGCTGCCTCTAGCTACTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR GCA 90 bp | AAACAAGATTGGGCTTATGGCTCGATGAGGGAGAAAGATCTTGAATTGCAGAGGACTTCGTGTTCGTTTTaGCTGTTGCTGGATTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: KQDWAYGSMREKDLELQRTSCSF*LLLDSS Trigger: GGAAGAATCCAGCAACAGGCAAAACGAACACGAAGT...CCTCTGCAATTCAAGATCTTTCTCCCTCATCGAGCCATAAGCCCAATCTTGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR CCA 90 bp | CCAGTAGCTAGAGGCAGCCAATGCAATATTAAAACAAAGCAAGACGGAGTTTCCGAATTGCCTCTTCGTTaGCTGAGATTTGCAGTTCAG | + |
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Preference number: 4 (lower is better) Translates to: PVARGSQCNIKTKQDGVSELPLR*LRFAVQ Trigger: CTGAACTGCAAATCTCAGCCAACGAAGAGGCAATTC...GGAAACTCCGTCTTGCTTTGTTTTAATATTGCATTGGCTGCCTCTAGCTACTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR CCA 90 bp | CCAGTAGCTAGAGGCAGCCAATGCAATATTAAAACAAAGCAAGACGGAGTTTCCGCTCAGTTCCATCCTTaGAGAAACTTCGTGTTCGTT | + |
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Preference number: 4 (lower is better) Translates to: PVARGSQCNIKTKQDGVSAQFHP*RNFVFV Trigger: AACGAACACGAAGTTTCTCCAAGGATGGAACTGAGC...GGAAACTCCGTCTTGCTTTGTTTTAATATTGCATTGGCTGCCTCTAGCTACTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR TCA 90 bp | ATCCAGTGTGTATTAGTTTATGAGGTGGTCACAAACACCGGAAGTCAGAGCGTTGAACGATGTTATATCTaGCATCTTCTGTCTCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: IQCVLVYEVVTNTGSQSVERCYI*HLLSPP Trigger: AGGAGGAGACAGAAGATGTCAGATATAACATCGTTC...AACGCTCTGACTTCCGGTGTTTGTGACCACCTCATAAACTAATACACACTGGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR TCA 90 bp | ATCCAGTGTGTATTAGTTTATGAGGTGGTCACAAACACCGGAAGTCAGAGCGTTTCAGAAGGCAGGGAATaGACGATGTTATATCTGACA | + |
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Preference number: 4 (lower is better) Translates to: IQCVLVYEVVTNTGSQSVSEGRE*TMLYLT Trigger: TGTCAGATATAACATCGTTCATTCCCTGCCTTCTGA...AACGCTCTGACTTCCGGTGTTTGTGACCACCTCATAAACTAATACACACTGGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR TCA 90 bp | CCAGTAGCTAGAGGCAGCCAATGCAATATTAAAACAAAGCAAGACGGAGTTTCCCCTGCTGATACCCCATaGAAATCATTGTTACAGGTT | + |
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Preference number: 4 (lower is better) Translates to: PVARGSQCNIKTKQDGVSPADTP*KSLLQV Trigger: AACCTGTAACAATGATTTTCATGGGGTATCAGCAGG...GGAAACTCCGTCTTGCTTTGTTTTAATATTGCATTGGCTGCCTCTAGCTACTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR GCA 90 bp | ATCCAGTGTGTATTAGTTTATGAGGTGGTCACAAACACCGGAAGTCAGAGCGTTTCGTTGGCTGAGATTTaGAGTTCAGCCTTTTCAAGA | + |
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Preference number: 4 (lower is better) Translates to: IQCVLVYEVVTNTGSQSVSLAEI*SSAFSR Trigger: TCTTGAAAAGGCTGAACTGCAAATCTCAGCCAACGA...AACGCTCTGACTTCCGGTGTTTGTGACCACCTCATAAACTAATACACACTGGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR GCA 90 bp | AAACAAGATTGGGCTTATGGCTCGATGAGGGAGAAAGATCTTGAATTGCAGAGGTTCCTCATTATCATCTaGCTGCTGATACCCCATGAA | + |
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Preference number: 4 (lower is better) Translates to: KQDWAYGSMREKDLELQRFLIII*LLIPHE Trigger: TTCATGGGGTATCAGCAGGCAGATGATAATGAGGAA...CCTCTGCAATTCAAGATCTTTCTCCCTCATCGAGCCATAAGCCCAATCTTGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR CCA 90 bp | CCAGTAGCTAGAGGCAGCCAATGCAATATTAAAACAAAGCAAGACGGAGTTTCCAGGTATGTAGGAACTTaGAAGGTCAGGGATATTAGC | + |
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Preference number: 4 (lower is better) Translates to: PVARGSQCNIKTKQDGVSRYVGT*KVRDIS Trigger: GCTAATATCCCTGACCTTCCAAGTTCCTACATACCT...GGAAACTCCGTCTTGCTTTGTTTTAATATTGCATTGGCTGCCTCTAGCTACTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR CCA 90 bp | CAACCCCAATGTGAATACATATGGCATTGCTCCCTCCCAGAAGACACATACATCCCTTTCTTGAAAATTTaGTCCAGGGCTTATGACTCT | + |
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Preference number: 4 (lower is better) Translates to: QPQCEYIWHCSLPEDTYIPFLKI*SRAYDS Trigger: AGAGTCATAAGCCCTGGACCAAATTTTCAAGAAAGG...GATGTATGTGTCTTCTGGGAGGGAGCAATGCCATATGTATTCACATTGGGGTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR TCA 90 bp | CCAGTAGCTAGAGGCAGCCAATGCAATATTAAAACAAAGCAAGACGGAGTTTCCTTTCAGACGCTTCTGTaGGATTTCTTCCTGTATCTT | + |
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Preference number: 4 (lower is better) Translates to: PVARGSQCNIKTKQDGVSFQTLL*DFFLYL Trigger: AAGATACAGGAAGAAATCTCACAGAAGCGTCTGAAA...GGAAACTCCGTCTTGCTTTGTTTTAATATTGCATTGGCTGCCTCTAGCTACTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR CCA 90 bp | AAACAAGATTGGGCTTATGGCTCGATGAGGGAGAAAGATCTTGAATTGCAGAGGGTTTTGTTCGTCATCTaGTCCTTCGTTTCTTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: KQDWAYGSMREKDLELQRVLFVI*SFVSFL Trigger: AAGGAAAGAAACGAAGGACCAGATGACGAACAAAAC...CCTCTGCAATTCAAGATCTTTCTCCCTCATCGAGCCATAAGCCCAATCTTGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR TCA 90 bp | AAACAAGATTGGGCTTATGGCTCGATGAGGGAGAAAGATCTTGAATTGCAGAGGGAGATGGAATTTTTGTaGGGAGATTTATGGTTTGTG | + |
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Preference number: 4 (lower is better) Translates to: KQDWAYGSMREKDLELQREMEFL*GDLWFV Trigger: CACAAACCATAAATCTCCTCACAAAAATTCCATCTC...CCTCTGCAATTCAAGATCTTTCTCCCTCATCGAGCCATAAGCCCAATCTTGTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR CCA 90 bp | AAACAAGATTGGGCTTATGGCTCGATGAGGGAGAAAGATCTTGAATTGCAGAGGGCTCTTTCAGAGAGATaGAATTTTTGTGAGGAGATT | + |
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Preference number: 4 (lower is better) Translates to: KQDWAYGSMREKDLELQRALSER*NFCEEI Trigger: AATCTCCTCACAAAAATTCCATCTCTCTGAAAGAGC...CCTCTGCAATTCAAGATCTTTCTCCCTCATCGAGCCATAAGCCCAATCTTGTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS-3UTR CCA 90 bp | CCAGTAGCTAGAGGCAGCCAATGCAATATTAAAACAAAGCAAGACGGAGTTTCCTTATTATGTCTTCTGTaGTCTTCTCGATCGACTTTA | + |
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Preference number: 4 (lower is better) Translates to: PVARGSQCNIKTKQDGVSLLCLL*SSRSTL Trigger: TAAAGTCGATCGAGAAGACCACAGAAGACATAATAA...GGAAACTCCGTCTTGCTTTGTTTTAATATTGCATTGGCTGCCTCTAGCTACTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| 3UTR CAA 72 bp | GTCCTAACCCACTTCTATAAAACTACCAGGTTCAACTaGCTCAGATGGCTGGTACTTAATAGCTATTGCTTT | + |
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Preference number: 4 (lower is better) Translates to: VLTHFYKTTRFN*LRWLVLNSYCF Trigger: AAAGCAATAGCTATTAAGTACCAGCCATCTGAGCAAGTTGAACCTGGTAGTTTTATAGAAGTGGGTTAGGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
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| CDS GCA 90 bp | GGATCCTCAGTCCCGTCTCCAGCTACTGGGACATCCAGGGGAGAGTaGCGGGCAGGGCTGCCTAAGCGTTCCTCTTGCTCTTTCAGAGAG | + |
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Preference number: 5 (lower is better) Translates to: GSSVPSPATGTSRGE*RAGLPKRSSCSFRE Trigger: CTCTCTGAAAGAGCAAGAGGAACGCTTAGGCAGCCCTGCCCGGCACTCTCCCCTGGATGTCCCAGTAGCTGGAGACGGGACTGAGGATCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
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| CDS CCA 90 bp | CTTGCTGAACCATTGATCGGGGCTGAGGTGTTGGCCGAGTGGGACTaGTGTGAGTGGGACCGTTGCTTCTCCTCTCTGAGAGCCCGTCGG | + |
|
Preference number: 5 (lower is better) Translates to: LAEPLIGAEVLAEWD*CEWDRCFSSLRARR Trigger: CCGACGGGCTCTCAGAGAGGAGAAGCAACGGTCCCACTCACACCAGTCCCACTCGGCCAACACCTCAGCCCCGATCAATGGTTCAGCAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
||
| CDS CCA 90 bp | CCATTGATCGGGGCTGAGGTGTTGGCCGAGTGGGACTGGTGTGAGTaGGACCGTTGCTTCTCCTCTCTGAGAGCCCGTCGGTCATATTGT | + |
|
Preference number: 5 (lower is better) Translates to: PLIGAEVLAEWDWCE*DRCFSSLRARRSYC Trigger: ACAATATGACCGACGGGCTCTCAGAGAGGAGAAGCAACGGTCCCACTCACACCAGTCCCACTCGGCCAACACCTCAGCCCCGATCAATGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
||
| CDS TCA 90 bp | CCTCTTTTGTTGGGTGTGGACCATCTCTTCCACTTGCTGAACCATTaGTCGGGGCTGAGGTGTTGGCCGAGTGGGACTGGTGTGAGTGGG | + |
|
Preference number: 5 (lower is better) Translates to: PLLLGVDHLFHLLNH*SGLRCWPSGTGVSG Trigger: CCCACTCACACCAGTCCCACTCGGCCAACACCTCAGCCCCGATCAATGGTTCAGCAAGTGGAAGAGATGGTCCACACCCAACAAAAGAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
||
| CDS GCA 90 bp | CGTCTCCAGCTACTGGGACATCCAGGGGAGAGTGCCGGGCAGGGCTaGCTAAGCGTTCCTCTTGCTCTTTCAGAGAGATGGAATTTTTGT | + |
|
Preference number: 5 (lower is better) Translates to: RLQLLGHPGESAGQG*LSVPLALSERWNFC Trigger: ACAAAAATTCCATCTCTCTGAAAGAGCAAGAGGAACGCTTAGGCAGCCCTGCCCGGCACTCTCCCCTGGATGTCCCAGTAGCTGGAGACG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
||
| CDS CCA 90 bp | CGGCCTAACTTCCGCTCTCTTTCTAGGAAGTGGGGTTGGTTTGGGTaGCTGGTAAACCTGACTGTAGGGAGCTACGGGATGGTAGGATGG | + |
|
Preference number: 5 (lower is better) Translates to: RPNFRSLSRKWGWFG*LVNLTVGSYGMVGW Trigger: CCATCCTACCATCCCGTAGCTCCCTACAGTCAGGTTTACCAGCCACCCAAACCAACCCCACTTCCTAGAAAGAGAGCGGAAGTTAGGCCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
||
| CDS CCA 90 bp | TGTGGGGTCACAGGCCTGCAAAACGGATTGGCGTACACTGGCTCATaGTACTCTGTGGGCGATTTAGAGTTCCTCTCTGAGGCTTGTCTT | + |
|
Preference number: 5 (lower is better) Translates to: CGVTGLQNGLAYTGS*YSVGDLEFLSEACL Trigger: AAGACAAGCCTCAGAGAGGAACTCTAAATCGCCCACAGAGTACCATGAGCCAGTGTACGCCAATCCGTTTTGCAGGCCTGTGACCCCACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
||
| CDS-3UTR CAA 90 bp | CAACCCCAATGTGAATACATATGGCATTGCTCCCTCCCAGAAGACACATACATCATCGGGGCTGAGGTGTaGGCCGAGTGGGACTGGTGT | + |
|
Preference number: 5 (lower is better) Translates to: QPQCEYIWHCSLPEDTYIIGAEV*AEWDWC Trigger: ACACCAGTCCCACTCGGCCAACACCTCAGCCCCGAT...GATGTATGTGTCTTCTGGGAGGGAGCAATGCCATATGTATTCACATTGGGGTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
||
| CDS CCA 90 bp | GTTTTCATACGGCCTAACTTCCGCTCTCTTTCTAGGAAGTGGGGTTaGTTTGGGTGGCTGGTAAACCTGACTGTAGGGAGCTACGGGATG | + |
|
Preference number: 5 (lower is better) Translates to: VFIRPNFRSLSRKWG*FGWLVNLTVGSYGM Trigger: CATCCCGTAGCTCCCTACAGTCAGGTTTACCAGCCACCCAAACCAACCCCACTTCCTAGAAAGAGAGCGGAAGTTAGGCCGTATGAAAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
||
| CDS-3UTR CAA 90 bp | AAACAAGATTGGGCTTATGGCTCGATGAGGGAGAAAGATCTTGAATTGCAGAGGCCGATTTCCCAGGGCTaGCTCTGCTGGGGCTCAGTT | + |
|
Preference number: 5 (lower is better) Translates to: KQDWAYGSMREKDLELQRPISQG*LCWGSV Trigger: AACTGAGCCCCAGCAGAGCAAGCCCTGGGAAATCGG...CCTCTGCAATTCAAGATCTTTCTCCCTCATCGAGCCATAAGCCCAATCTTGTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
||
| CDS GCA 90 bp | AACTTCGTGTTCGTTTTGCCTGTTGCTGGATTCTTCCCAAGGGCTTaGCATCCTCTTTTGTTGGGTGTGGACCATCTCTTCCACTTGCTG | + |
|
Preference number: 5 (lower is better) Translates to: NFVFVLPVAGFFPRA*HPLLLGVDHLFHLL Trigger: CAGCAAGTGGAAGAGATGGTCCACACCCAACAAAAGAGGATGGCAAGCCCTTGGGAAGAATCCAGCAACAGGCAAAACGAACACGAAGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
||
| CDS CCA 90 bp | GTTTGTGTTTTCATACGGCCTAACTTCCGCTCTCTTTCTAGGAAGTaGGGTTGGTTTGGGTGGCTGGTAAACCTGACTGTAGGGAGCTAC | + |
|
Preference number: 5 (lower is better) Translates to: VCVFIRPNFRSLSRK*GWFGWLVNLTVGSY Trigger: GTAGCTCCCTACAGTCAGGTTTACCAGCCACCCAAACCAACCCCACTTCCTAGAAAGAGAGCGGAAGTTAGGCCGTATGAAAACACAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
||
| CDS TCA 90 bp | CTGTGTCATCCACATCAGAAGGCAGGGAATGAACGATGTTATATCTaGCATCTTCTGTCTCCTCCTGGCAAGTGGGTGAAGAACACTGGG | + |
|
Preference number: 5 (lower is better) Translates to: LCHPHQKAGNERCYI*HLLSPPGKWVKNTG Trigger: CCCAGTGTTCTTCACCCACTTGCCAGGAGGAGACAGAAGATGTCAGATATAACATCGTTCATTCCCTGCCTTCTGATGTGGATGACACAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
||
| CDS CCA 90 bp | GCCGGGCAGGGCTGCCTAAGCGTTCCTCTTGCTCTTTCAGAGAGATaGAATTTTTGTGAGGAGATTTATGGTTTGTGTTTTCATACGGCC | + |
|
Preference number: 5 (lower is better) Translates to: AGQGCLSVPLALSER*NFCEEIYGLCFHTA Trigger: GGCCGTATGAAAACACAAACCATAAATCTCCTCACAAAAATTCCATCTCTCTGAAAGAGCAAGAGGAACGCTTAGGCAGCCCTGCCCGGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
||
| CDS TCA 90 bp | CTGAGGATGCTTTGCTCTAGAACCTGGGTCTGGTGCTGGTCTTGCTaGTTTTGCTTCTTCATCTCTTCGTGTTCTTTTCCACTGCCGATT | + |
|
Preference number: 5 (lower is better) Translates to: LRMLCSRTWVWCWSC*FCFFISSCSFPLPI Trigger: AATCGGCAGTGGAAAAGAACACGAAGAGATGAAGAAGCAAAATCAGCAAGACCAGCACCAGACCCAGGTTCTAGAGCAAAGCATCCTCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 ENSMUST00000143611.2 |
||
| CDS-3UTR CAA 90 bp | CCAGTAGCTAGAGGCAGCCAATGCAATATTAAAACAAAGCAAGACGGAGTTTCCTGTGCGCAGATTCATTaGCATGGTTGCCCAGTCCGT | + |
|
Preference number: 5 (lower is better) Translates to: PVARGSQCNIKTKQDGVSCAQIH*HGCPVR Trigger: ACGGACTGGGCAACCATGCAAATGAATCTGCGCACA...GGAAACTCCGTCTTGCTTTGTTTTAATATTGCATTGGCTGCCTCTAGCTACTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
||
| CDS-3UTR CAA 90 bp | CCAGTAGCTAGAGGCAGCCAATGCAATATTAAAACAAAGCAAGACGGAGTTTCCGCTTGCCATCCTCTTTaGTTGGGTGTGGACCATCTC | + |
|
Preference number: 5 (lower is better) Translates to: PVARGSQCNIKTKQDGVSACHPL*LGVDHL Trigger: GAGATGGTCCACACCCAACAAAAGAGGATGGCAAGC...GGAAACTCCGTCTTGCTTTGTTTTAATATTGCATTGGCTGCCTCTAGCTACTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
||
| CDS-3UTR CAA 90 bp | CAACCCCAATGTGAATACATATGGCATTGCTCCCTCCCAGAAGACACATACATCTGTTCGTTTTGCCTGTaGCTGGATTCTTCCCAAGGG | + |
|
Preference number: 5 (lower is better) Translates to: QPQCEYIWHCSLPEDTYICSFCL*LDSSQG Trigger: CCCTTGGGAAGAATCCAGCAACAGGCAAAACGAACA...GATGTATGTGTCTTCTGGGAGGGAGCAATGCCATATGTATTCACATTGGGGTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
||
| CDS-3UTR CAA 90 bp | CCAGTAGCTAGAGGCAGCCAATGCAATATTAAAACAAAGCAAGACGGAGTTTCCATTCTTCCCAAGGGCTaGCCATCCTCTTTTGTTGGG | + |
|
Preference number: 5 (lower is better) Translates to: PVARGSQCNIKTKQDGVSILPKG*PSSFVG Trigger: CCCAACAAAAGAGGATGGCAAGCCCTTGGGAAGAAT...GGAAACTCCGTCTTGCTTTGTTTTAATATTGCATTGGCTGCCTCTAGCTACTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
||
| CDS-3UTR CAA 90 bp | CCAGTAGCTAGAGGCAGCCAATGCAATATTAAAACAAAGCAAGACGGAGTTTCCGGCTCAGTTCCATCCTaGGAGAAACTTCGTGTTCGT | + |
|
Preference number: 5 (lower is better) Translates to: PVARGSQCNIKTKQDGVSGSVPS*EKLRVR Trigger: ACGAACACGAAGTTTCTCCAAGGATGGAACTGAGCC...GGAAACTCCGTCTTGCTTTGTTTTAATATTGCATTGGCTGCCTCTAGCTACTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
||
| CDS-3UTR CAA 90 bp | CAACCCCAATGTGAATACATATGGCATTGCTCCCTCCCAGAAGACACATACATCCTGGTCTTGCTGATTTaGCTTCTTCATCTCTTCGTG | + |
|
Preference number: 5 (lower is better) Translates to: QPQCEYIWHCSLPEDTYILVLLI*LLHLFV Trigger: CACGAAGAGATGAAGAAGCAAAATCAGCAAGACCAG...GATGTATGTGTCTTCTGGGAGGGAGCAATGCCATATGTATTCACATTGGGGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
||
| CDS-3UTR CAA 90 bp | CCAGTAGCTAGAGGCAGCCAATGCAATATTAAAACAAAGCAAGACGGAGTTTCCGGTCTGGTGCTGGTCTaGCTGATTTTGCTTCTTCAT | + |
|
Preference number: 5 (lower is better) Translates to: PVARGSQCNIKTKQDGVSGLVLV*LILLLH Trigger: ATGAAGAAGCAAAATCAGCAAGACCAGCACCAGACC...GGAAACTCCGTCTTGCTTTGTTTTAATATTGCATTGGCTGCCTCTAGCTACTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
||
| CDS-3UTR CAA 90 bp | CAACCCCAATGTGAATACATATGGCATTGCTCCCTCCCAGAAGACACATACATCTTAGCTTCTTCAGAATaGCCTCTTCGTTGGCTGAGA | + |
|
Preference number: 5 (lower is better) Translates to: QPQCEYIWHCSLPEDTYILASSE*PLRWLR Trigger: TCTCAGCCAACGAAGAGGCAATTCTGAAGAAGCTAA...GATGTATGTGTCTTCTGGGAGGGAGCAATGCCATATGTATTCACATTGGGGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
||
| CDS TCA 90 bp | ATCATTGTTACAGGTTCTGTGTCATCCACATCAGAAGGCAGGGAATaGACGATGTTATATCTGACATCTTCTGTCTCCTCCTGGCAAGTG | + |
|
Preference number: 5 (lower is better) Translates to: IIVTGSVSSTSEGRE*TMLYLTSSVSSWQV Trigger: CACTTGCCAGGAGGAGACAGAAGATGTCAGATATAACATCGTTCATTCCCTGCCTTCTGATGTGGATGACACAGAACCTGTAACAATGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
||
| CDS GCA 90 bp | CTGAGAGCCCGTCGGTCATATTGTGCGCAGATTCATTTGCATGGTTaGCCAGTCCGTTCGTTTTCATCATTATCCTTTCTTGAAAATTTG | + |
|
Preference number: 5 (lower is better) Translates to: LRARRSYCAQIHLHG*PVRSFSSLSFLENL Trigger: CAAATTTTCAAGAAAGGATAATGATGAAAACGAACGGACTGGGCAACCATGCAAATGAATCTGCGCACAATATGACCGACGGGCTCTCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
||
| CDS-3UTR CAA 90 bp | CCAGTAGCTAGAGGCAGCCAATGCAATATTAAAACAAAGCAAGACGGAGTTTCCTCCTGTATCTTTCTTTaGTCAGTGATGGCCTGGAGT | + |
|
Preference number: 5 (lower is better) Translates to: PVARGSQCNIKTKQDGVSSCIFL*SVMAWS Trigger: ACTCCAGGCCATCACTGACAAAAGAAAGATACAGGA...GGAAACTCCGTCTTGCTTTGTTTTAATATTGCATTGGCTGCCTCTAGCTACTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
||
| CDS-3UTR CAA 90 bp | AAACAAGATTGGGCTTATGGCTCGATGAGGGAGAAAGATCTTGAATTGCAGAGGAGAATTGCCTCTTCGTaGGCTGAGATTTGCAGTTCA | + |
|
Preference number: 5 (lower is better) Translates to: KQDWAYGSMREKDLELQRRIASS*AEICSS Trigger: TGAACTGCAAATCTCAGCCAACGAAGAGGCAATTCT...CCTCTGCAATTCAAGATCTTTCTCCCTCATCGAGCCATAAGCCCAATCTTGTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
||
| CDS-3UTR CAA 90 bp | ATCCAGTGTGTATTAGTTTATGAGGTGGTCACAAACACCGGAAGTCAGAGCGTTCAGCAGCGGCATGCCTaGTCATTTTTATTACCTGTT | + |
|
Preference number: 5 (lower is better) Translates to: IQCVLVYEVVTNTGSQSVQQRHA*SFLLPV Trigger: AACAGGTAATAAAAATGACAAGGCATGCCGCTGCTG...AACGCTCTGACTTCCGGTGTTTGTGACCACCTCATAAACTAATACACACTGGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
||
| CDS TCA 90 bp | GGTGCCATTGTAGGTTGTGTTCTGATTGGAGCTAACAGCATAGACTaGTTTCTGCCGGTCCTCATACACTTTTATCCCTGTGCTTTTAAA | + |
|
Preference number: 5 (lower is better) Translates to: GAIVGCVLIGANSID*FLPVLIHFYPCAFK Trigger: TTTAAAAGCACAGGGATAAAAGTGTATGAGGACCGGCAGAAATCAGTCTATGCTGTTAGCTCCAATCAGAACACAACCTACAATGGCACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
||
| CDS GCA 90 bp | ATCGACTTTAGCTTCTTCAGAATTGCCTCTTCGTTGGCTGAGATTTaGAGTTCAGCCTTTTCAAGATCTTGGATCTCTTTCTCAAGCCTG | + |
|
Preference number: 5 (lower is better) Translates to: IDFSFFRIASSLAEI*SSAFSRSWISFSSL Trigger: CAGGCTTGAGAAAGAGATCCAAGATCTTGAAAAGGCTGAACTGCAAATCTCAGCCAACGAAGAGGCAATTCTGAAGAAGCTAAAGTCGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 ENSMUST00000143611.2 |
||
| CDS CCA 90 bp | TGGTCTTCTCGATCGACTTTAGCTTCTTCAGAATTGCCTCTTCGTTaGCTGAGATTTGCAGTTCAGCCTTTTCAAGATCTTGGATCTCTT | + |
|
Preference number: 5 (lower is better) Translates to: WSSRSTLASSELPLR*LRFAVQPFQDLGSL Trigger: AAGAGATCCAAGATCTTGAAAAGGCTGAACTGCAAATCTCAGCCAACGAAGAGGCAATTCTGAAGAAGCTAAAGTCGATCGAGAAGACCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 ENSMUST00000143611.2 |
||
| CDS-3UTR CAA 90 bp | ATCCAGTGTGTATTAGTTTATGAGGTGGTCACAAACACCGGAAGTCAGAGCGTTAGCCTTTTCAAGATCTaGGATCTCTTTCTCAAGCCT | + |
|
Preference number: 5 (lower is better) Translates to: IQCVLVYEVVTNTGSQSVSLFKI*DLFLKP Trigger: AGGCTTGAGAAAGAGATCCAAGATCTTGAAAAGGCT...AACGCTCTGACTTCCGGTGTTTGTGACCACCTCATAAACTAATACACACTGGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
||
| CDS-3UTR CAA 90 bp | CAACCCCAATGTGAATACATATGGCATTGCTCCCTCCCAGAAGACACATACATCCATCATTATCCTTTCTaGAAAATTTGGTCCAGGGCT | + |
|
Preference number: 5 (lower is better) Translates to: QPQCEYIWHCSLPEDTYIHHYPF*KIWSRA Trigger: AGCCCTGGACCAAATTTTCAAGAAAGGATAATGATG...GATGTATGTGTCTTCTGGGAGGGAGCAATGCCATATGTATTCACATTGGGGTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119557.8 |
||
| CDS CCA 72 bp | GCTGAACCATTGATCGGGGCTGAGGTGTTGGCCGAGTaGGACTGGTGTGAGTGGGACCGTTGCTTCTCCTCT | + |
|
Preference number: 6 (lower is better) Translates to: AEPLIGAEVLAE*DWCEWDRCFSS Trigger: AGAGGAGAAGCAACGGTCCCACTCACACCAGTCCCACTCGGCCAACACCTCAGCCCCGATCAATGGTTCAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
||
| CDS CAA 72 bp | CTTCCACTTGCTGAACCATTGATCGGGGCTGAGGTGTaGGCCGAGTGGGACTGGTGTGAGTGGGACCGTTGC | + |
|
Preference number: 6 (lower is better) Translates to: LPLAEPLIGAEV*AEWDWCEWDRC Trigger: GCAACGGTCCCACTCACACCAGTCCCACTCGGCCAACACCTCAGCCCCGATCAATGGTTCAGCAAGTGGAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
||
| CDS CAA 90 bp | GGACCATCTCTTCCACTTGCTGAACCATTGATCGGGGCTGAGGTGTaGGCCGAGTGGGACTGGTGTGAGTGGGACCGTTGCTTCTCCTCT | + |
|
Preference number: 6 (lower is better) Translates to: GPSLPLAEPLIGAEV*AEWDWCEWDRCFSS Trigger: AGAGGAGAAGCAACGGTCCCACTCACACCAGTCCCACTCGGCCAACACCTCAGCCCCGATCAATGGTTCAGCAAGTGGAAGAGATGGTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
||
| CDS CAA 72 bp | GTTGGGTGTGGACCATCTCTTCCACTTGCTGAACCATaGATCGGGGCTGAGGTGTTGGCCGAGTGGGACTGG | + |
|
Preference number: 6 (lower is better) Translates to: VGCGPSLPLAEP*IGAEVLAEWDW Trigger: CCAGTCCCACTCGGCCAACACCTCAGCCCCGATCAATGGTTCAGCAAGTGGAAGAGATGGTCCACACCCAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
||
| CDS TCA 72 bp | TTGGGTGTGGACCATCTCTTCCACTTGCTGAACCATTaGTCGGGGCTGAGGTGTTGGCCGAGTGGGACTGGT | + |
|
Preference number: 6 (lower is better) Translates to: LGVDHLFHLLNH*SGLRCWPSGTG Trigger: ACCAGTCCCACTCGGCCAACACCTCAGCCCCGATCAATGGTTCAGCAAGTGGAAGAGATGGTCCACACCCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
||
| CDS CAA 90 bp | TCCTCTTTTGTTGGGTGTGGACCATCTCTTCCACTTGCTGAACCATaGATCGGGGCTGAGGTGTTGGCCGAGTGGGACTGGTGTGAGTGG | + |
|
Preference number: 6 (lower is better) Translates to: SSFVGCGPSLPLAEP*IGAEVLAEWDWCEW Trigger: CCACTCACACCAGTCCCACTCGGCCAACACCTCAGCCCCGATCAATGGTTCAGCAAGTGGAAGAGATGGTCCACACCCAACAAAAGAGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
||
| CDS TCA 72 bp | GGGACTGGTGTGAGTGGGACCGTTGCTTCTCCTCTCTaGGAGCCCGTCGGTCATATTGTGCGCAGATTCATT | + |
|
Preference number: 6 (lower is better) Translates to: GTGVSGTVASPL*EPVGHIVRRFI Trigger: AATGAATCTGCGCACAATATGACCGACGGGCTCTCAGAGAGGAGAAGCAACGGTCCCACTCACACCAGTCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
||
| CDS CAA 72 bp | CTTTCTCTCTGTGGGGTCACAGGCCTGCAAAACGGATaGGCGTACACTGGCTCATGGTACTCTGTGGGCGAT | + |
|
Preference number: 6 (lower is better) Translates to: LSLCGVTGLQNG*AYTGSWYSVGD Trigger: ATCGCCCACAGAGTACCATGAGCCAGTGTACGCCAATCCGTTTTGCAGGCCTGTGACCCCACAGAGAGAAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
||
| CDS CCA 72 bp | TGGGGTCACAGGCCTGCAAAACGGATTGGCGTACACTaGCTCATGGTACTCTGTGGGCGATTTAGAGTTCCT | + |
|
Preference number: 6 (lower is better) Translates to: WGHRPAKRIGVH*LMVLCGRFRVP Trigger: AGGAACTCTAAATCGCCCACAGAGTACCATGAGCCAGTGTACGCCAATCCGTTTTGCAGGCCTGTGACCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
||
| CDS CCA 72 bp | TTTCTCTCTGTGGGGTCACAGGCCTGCAAAACGGATTaGCGTACACTGGCTCATGGTACTCTGTGGGCGATT | + |
|
Preference number: 6 (lower is better) Translates to: FLSVGSQACKTD*RTLAHGTLWAI Trigger: AATCGCCCACAGAGTACCATGAGCCAGTGTACGCCAATCCGTTTTGCAGGCCTGTGACCCCACAGAGAGAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
||
| CDS CAA 72 bp | GTAGGGAGCTACGGGATGGTAGGATGGCCTCTCGGTTaGTCCTTCATTATCCTCCGCCTCGTCATCAATCAC | + |
|
Preference number: 6 (lower is better) Translates to: VGSYGMVGWPLG*SFIILRLVINH Trigger: GTGATTGATGACGAGGCGGAGGATAATGAAGGACAAACCGAGAGGCCATCCTACCATCCCGTAGCTCCCTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
||
| CDS CAA 90 bp | AACCTGACTGTAGGGAGCTACGGGATGGTAGGATGGCCTCTCGGTTaGTCCTTCATTATCCTCCGCCTCGTCATCAATCACAACGAGCTC | + |
|
Preference number: 6 (lower is better) Translates to: NLTVGSYGMVGWPLG*SFIILRLVINHNEL Trigger: GAGCTCGTTGTGATTGATGACGAGGCGGAGGATAATGAAGGACAAACCGAGAGGCCATCCTACCATCCCGTAGCTCCCTACAGTCAGGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
||
| CDS CCA 72 bp | ACAGGCCTGCAAAACGGATTGGCGTACACTGGCTCATaGTACTCTGTGGGCGATTTAGAGTTCCTCTCTGAG | + |
|
Preference number: 6 (lower is better) Translates to: TGLQNGLAYTGS*YSVGDLEFLSE Trigger: CTCAGAGAGGAACTCTAAATCGCCCACAGAGTACCATGAGCCAGTGTACGCCAATCCGTTTTGCAGGCCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
||
| CDS CAA 90 bp | CTTATGACTCTTTCTCTCTGTGGGGTCACAGGCCTGCAAAACGGATaGGCGTACACTGGCTCATGGTACTCTGTGGGCGATTTAGAGTTC | + |
|
Preference number: 6 (lower is better) Translates to: LMTLSLCGVTGLQNG*AYTGSWYSVGDLEF Trigger: GAACTCTAAATCGCCCACAGAGTACCATGAGCCAGTGTACGCCAATCCGTTTTGCAGGCCTGTGACCCCACAGAGAGAAAGAGTCATAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
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| CDS GCA 72 bp | CTCAGTTCCATCCTTGGAGAAACTTCGTGTTCGTTTTaGCTGTTGCTGGATTCTTCCCAAGGGCTTGCCATC | + |
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Preference number: 6 (lower is better) Translates to: LSSILGETSCSF*LLLDSSQGLAI Trigger: GATGGCAAGCCCTTGGGAAGAATCCAGCAACAGGCAAAACGAACACGAAGTTTCTCCAAGGATGGAACTGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
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| CDS CAA 72 bp | GTTCGTTTTGCCTGTTGCTGGATTCTTCCCAAGGGCTaGCCATCCTCTTTTGTTGGGTGTGGACCATCTCTT | + |
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Preference number: 6 (lower is better) Translates to: VRFACCWILPKG*PSSFVGCGPSL Trigger: AAGAGATGGTCCACACCCAACAAAAGAGGATGGCAAGCCCTTGGGAAGAATCCAGCAACAGGCAAAACGAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
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| CDS CAA 72 bp | GCTCAGTTCCATCCTTGGAGAAACTTCGTGTTCGTTTaGCCTGTTGCTGGATTCTTCCCAAGGGCTTGCCAT | + |
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Preference number: 6 (lower is better) Translates to: AQFHPWRNFVFV*PVAGFFPRACH Trigger: ATGGCAAGCCCTTGGGAAGAATCCAGCAACAGGCAAAACGAACACGAAGTTTCTCCAAGGATGGAACTGAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
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| CDS CAA 90 bp | AAACTTCGTGTTCGTTTTGCCTGTTGCTGGATTCTTCCCAAGGGCTaGCCATCCTCTTTTGTTGGGTGTGGACCATCTCTTCCACTTGCT | + |
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Preference number: 6 (lower is better) Translates to: KLRVRFACCWILPKG*PSSFVGCGPSLPLA Trigger: AGCAAGTGGAAGAGATGGTCCACACCCAACAAAAGAGGATGGCAAGCCCTTGGGAAGAATCCAGCAACAGGCAAAACGAACACGAAGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
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| CDS GCA 72 bp | CCATCCTTGGAGAAACTTCGTGTTCGTTTTGCCTGTTaGTGGATTCTTCCCAAGGGCTTGCCATCCTCTTTT | + |
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Preference number: 6 (lower is better) Translates to: PSLEKLRVRFAC*WILPKGLPSSF Trigger: AAAAGAGGATGGCAAGCCCTTGGGAAGAATCCAGCAACAGGCAAAACGAACACGAAGTTTCTCCAAGGATGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
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| CDS CAA 72 bp | CTGAGAGCCCGTCGGTCATATTGTGCGCAGATTCATTaGCATGGTTGCCCAGTCCGTTCGTTTTCATCATTA | + |
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Preference number: 6 (lower is better) Translates to: LRARRSYCAQIH*HGCPVRSFSSL Trigger: TAATGATGAAAACGAACGGACTGGGCAACCATGCAAATGAATCTGCGCACAATATGACCGACGGGCTCTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
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| CDS CAA 72 bp | TCCATCCTTGGAGAAACTTCGTGTTCGTTTTGCCTGTaGCTGGATTCTTCCCAAGGGCTTGCCATCCTCTTT | + |
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Preference number: 6 (lower is better) Translates to: SILGETSCSFCL*LDSSQGLAILF Trigger: AAAGAGGATGGCAAGCCCTTGGGAAGAATCCAGCAACAGGCAAAACGAACACGAAGTTTCTCCAAGGATGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
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| CDS CAA 90 bp | TTCTCCTCTCTGAGAGCCCGTCGGTCATATTGTGCGCAGATTCATTaGCATGGTTGCCCAGTCCGTTCGTTTTCATCATTATCCTTTCTT | + |
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Preference number: 6 (lower is better) Translates to: FSSLRARRSYCAQIH*HGCPVRSFSSLSFL Trigger: AAGAAAGGATAATGATGAAAACGAACGGACTGGGCAACCATGCAAATGAATCTGCGCACAATATGACCGACGGGCTCTCAGAGAGGAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
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| CDS CAA 72 bp | CTGTGGTCTTCTCGATCGACTTTAGCTTCTTCAGAATaGCCTCTTCGTTGGCTGAGATTTGCAGTTCAGCCT | + |
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Preference number: 6 (lower is better) Translates to: LWSSRSTLASSE*PLRWLRFAVQP Trigger: AGGCTGAACTGCAAATCTCAGCCAACGAAGAGGCAATTCTGAAGAAGCTAAAGTCGATCGAGAAGACCACAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 ENSMUST00000143611.2 |
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| CDS TCA 72 bp | CTTTGCTCTAGAACCTGGGTCTGGTGCTGGTCTTGCTaGTTTTGCTTCTTCATCTCTTCGTGTTCTTTTCCA | + |
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Preference number: 6 (lower is better) Translates to: LCSRTWVWCWSC*FCFFISSCSFP Trigger: TGGAAAAGAACACGAAGAGATGAAGAAGCAAAATCAGCAAGACCAGCACCAGACCCAGGTTCTAGAGCAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 ENSMUST00000143611.2 |
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| CDS TCA 72 bp | CCCTGTGCTTTTAAAGTCATCAGATGGCAGCGGTATTaGAGACAGAACTACGCTCTCTCCAGTCTTCAAATC | + |
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Preference number: 6 (lower is better) Translates to: PCAFKVIRWQRY*RQNYALSSLQI Trigger: GATTTGAAGACTGGAGAGAGCGTAGTTCTGTCTTCAATACCGCTGCCATCTGATGACTTTAAAAGCACAGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
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| CDS TCA 72 bp | ACAGGTTCTGTGTCATCCACATCAGAAGGCAGGGAATaGACGATGTTATATCTGACATCTTCTGTCTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: TGSVSSTSEGRE*TMLYLTSSVSS Trigger: GGAGGAGACAGAAGATGTCAGATATAACATCGTTCATTCCCTGCCTTCTGATGTGGATGACACAGAACCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
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| CDS CAA 72 bp | CCGTCGGTCATATTGTGCGCAGATTCATTTGCATGGTaGCCCAGTCCGTTCGTTTTCATCATTATCCTTTCT | + |
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Preference number: 6 (lower is better) Translates to: PSVILCADSFAW*PSPFVFIIILS Trigger: AGAAAGGATAATGATGAAAACGAACGGACTGGGCAACCATGCAAATGAATCTGCGCACAATATGACCGACGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
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| CDS CAA 90 bp | GTGGTCTTCTCGATCGACTTTAGCTTCTTCAGAATTGCCTCTTCGTaGGCTGAGATTTGCAGTTCAGCCTTTTCAAGATCTTGGATCTCT | + |
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Preference number: 6 (lower is better) Translates to: VVFSIDFSFFRIASS*AEICSSAFSRSWIS Trigger: AGAGATCCAAGATCTTGAAAAGGCTGAACTGCAAATCTCAGCCAACGAAGAGGCAATTCTGAAGAAGCTAAAGTCGATCGAGAAGACCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 ENSMUST00000143611.2 |
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| CDS GCA 72 bp | CGTCGGTCATATTGTGCGCAGATTCATTTGCATGGTTaGCCAGTCCGTTCGTTTTCATCATTATCCTTTCTT | + |
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Preference number: 6 (lower is better) Translates to: RRSYCAQIHLHG*PVRSFSSLSFL Trigger: AAGAAAGGATAATGATGAAAACGAACGGACTGGGCAACCATGCAAATGAATCTGCGCACAATATGACCGACG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 |
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| CDS CCA 72 bp | CGATCGACTTTAGCTTCTTCAGAATTGCCTCTTCGTTaGCTGAGATTTGCAGTTCAGCCTTTTCAAGATCTT | + |
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Preference number: 6 (lower is better) Translates to: RSTLASSELPLR*LRFAVQPFQDL Trigger: AAGATCTTGAAAAGGCTGAACTGCAAATCTCAGCCAACGAAGAGGCAATTCTGAAGAAGCTAAAGTCGATCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 ENSMUST00000143611.2 |
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| CDS CAA 72 bp | TCGATCGACTTTAGCTTCTTCAGAATTGCCTCTTCGTaGGCTGAGATTTGCAGTTCAGCCTTTTCAAGATCT | + |
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Preference number: 6 (lower is better) Translates to: SIDFSFFRIASS*AEICSSAFSRS Trigger: AGATCTTGAAAAGGCTGAACTGCAAATCTCAGCCAACGAAGAGGCAATTCTGAAGAAGCTAAAGTCGATCGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 ENSMUST00000143611.2 |
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| CDS CAA 90 bp | TTATGTCTTCTGTGGTCTTCTCGATCGACTTTAGCTTCTTCAGAATaGCCTCTTCGTTGGCTGAGATTTGCAGTTCAGCCTTTTCAAGAT | + |
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Preference number: 6 (lower is better) Translates to: LCLLWSSRSTLASSE*PLRWLRFAVQPFQD Trigger: ATCTTGAAAAGGCTGAACTGCAAATCTCAGCCAACGAAGAGGCAATTCTGAAGAAGCTAAAGTCGATCGAGAAGACCACAGAAGACATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 ENSMUST00000143611.2 |
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| CDS CCA 72 bp | CCTTTTCCACCTTCACGGATCTTATTATGTCTTCTGTaGTCTTCTCGATCGACTTTAGCTTCTTCAGAATTG | + |
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Preference number: 6 (lower is better) Translates to: PFPPSRILLCLL*SSRSTLASSEL Trigger: CAATTCTGAAGAAGCTAAAGTCGATCGAGAAGACCACAGAAGACATAATAAGATCCGTGAAGGTGGAAAAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040097.14 ENSMUST00000119557.8 ENSMUST00000143611.2 |
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