Pregenerated sensors for PAK1IP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038683Ensembl transcript IDs: ENSMUST00000046951.10
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | GAATTCCGTCAAAAGGACATTCAGATAGGGAGGAGAAATCTGGGATTTGCCACGTGTGCGAGTGGTGAGTaGAATCAGCCACAGGAGTCC | + |
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Preference number: 4 (lower is better) Translates to: EFRQKDIQIGRRNLGFATCASGE*NQPQES Trigger: GGACTCCTGTGGCTGATTTCACTCACCACTCGCACA...CGTGGCAAATCCCAGATTTCTCCTCCCTATCTGAATGTCCTTTTGACGGAATTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR GCA 90 bp | AACAAAGCACCACCTAAAGAGCGGTTCTTTTTCTTAAGCTGCACATTTTCTACGAGGGCAGGGCTCTGCTaGTGGAGGAAGGCTCGCCAT | + |
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Preference number: 4 (lower is better) Translates to: NKAPPKERFFFLSCTFSTRAGLC*WRKARH Trigger: ATGGCGAGCCTTCCTCCAGCAGCAGAGCCCTGCCCT...CGTAGAAAATGTGCAGCTTAAGAAAAAGAACCGCTCTTTAGGTGGTGCTTTGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR TCA 90 bp | TACGGAAGGAGATATTTTCTTCTCACAGGGACATGGAGAATTCCGTCAAAAGGAGCAGTGTGCGAGTGGTaGGTGAAATCAGCCACAGGA | + |
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Preference number: 4 (lower is better) Translates to: YGRRYFLLTGTWRIPSKGAVCEW*VKSATG Trigger: TCCTGTGGCTGATTTCACTCACCACTCGCACACTGC...TCCTTTTGACGGAATTCTCCATGTCCCTGTGAGAAGAAAATATCTCCTTCCGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR GCA 90 bp | GGACATGGAGAATTCCGTCAAAAGGACATTCAGATAGGGAGGAGAAATCTGGGATCTTCACATCCCAGATaGAGATGTGGCCGTCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: GHGEFRQKDIQIGRRNLGSSHPR*RCGRLL Trigger: CAGAAGACGGCCACATCTGCATCTGGGATGTGAAGA...TCCCAGATTTCTCCTCCCTATCTGAATGTCCTTTTGACGGAATTCTCCATGTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR CCA 90 bp | AAAGCACCACCTAAAGAGCGGTTCTTTTTCTTAAGCTGCACATTTTCTACGGAACTACATAGCGACTGTTaGAGGCCAGCACCGACAGGG | + |
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Preference number: 4 (lower is better) Translates to: KAPPKERFFFLSCTFSTELHSDC*RPAPTG Trigger: CCCTGTCGGTGCTGGCCTCCAACAGTCGCTATGTAG...TTCCGTAGAAAATGTGCAGCTTAAGAAAAAGAACCGCTCTTTAGGTGGTGCTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR TCA 90 bp | GGGACATGGAGAATTCCGTCAAAAGGACATTCAGATAGGGAGGAGAAATCTGGGTGCAAGGACAGAGTCTaGGAGAAAGGTAACAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: GTWRIPSKGHSDREEKSGCKDRV*EKGNRR Trigger: TCTTCTGTTACCTTTCTCTCAGACTCTGTCCTTGCA...CCCAGATTTCTCCTCCCTATCTGAATGTCCTTTTGACGGAATTCTCCATGTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR GCA 90 bp | GAATTCCGTCAAAAGGACATTCAGATAGGGAGGAGAAATCTGGGATTTGCCACGGCCCCACTGATTAAGTaGTGGTTGCCATGGAATTTC | + |
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Preference number: 4 (lower is better) Translates to: EFRQKDIQIGRRNLGFATAPLIK*WLPWNF Trigger: GAAATTCCATGGCAACCAGCACTTAATCAGTGGGGC...CGTGGCAAATCCCAGATTTCTCCTCCCTATCTGAATGTCCTTTTGACGGAATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR CCA 90 bp | GGAGATATTTTCTTCTCACAGGGACATGGAGAATTCCGTCAAAAGGACATTCAGGTACTTCCCTCCACTTaGGGACCACTCCACTATGTG | + |
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Preference number: 4 (lower is better) Translates to: GDIFFSQGHGEFRQKDIQVLPST*GPLHYV Trigger: CACATAGTGGAGTGGTCCCCAAGTGGAGGGAAGTAC...CTGAATGTCCTTTTGACGGAATTCTCCATGTCCCTGTGAGAAGAAAATATCTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR CCA 90 bp | CACATTTTCTACGGAAGGAGATATTTTCTTCTCACAGGGACATGGAGAATTCCGTCGATTGTCTTAGGTTaGTCAGGGCAGGGCTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: HIFYGRRYFLLTGTWRIPSIVLG*SGQGSA Trigger: AGCAGAGCCCTGCCCTGACCAACCTAAGACAATCGA...CGGAATTCTCCATGTCCCTGTGAGAAGAAAATATCTCCTTCCGTAGAAAATGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR CCA 90 bp | GGGACATGGAGAATTCCGTCAAAAGGACATTCAGATAGGGAGGAGAAATCTGGGCCATTTTCCTCTTCTTaGCTGTCACTGGGCTATTTC | + |
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Preference number: 4 (lower is better) Translates to: GTWRIPSKGHSDREEKSGPFSSS*LSLGYF Trigger: GAAATAGCCCAGTGACAGCCAAGAAGAGGAAAATGG...CCCAGATTTCTCCTCCCTATCTGAATGTCCTTTTGACGGAATTCTCCATGTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR TCA 90 bp | ATTTTCTACGGAAGGAGATATTTTCTTCTCACAGGGACATGGAGAATTCCGTCACGTCTTCTGCCCCACTaGTTAAGTGCTGGTTGCCAT | + |
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Preference number: 4 (lower is better) Translates to: IFYGRRYFLLTGTWRIPSRLLPH*LSAGCH Trigger: ATGGCAACCAGCACTTAATCAGTGGGGCAGAAGACG...TGACGGAATTCTCCATGTCCCTGTGAGAAGAAAATATCTCCTTCCGTAGAAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR TCA 90 bp | ACGGAAGGAGATATTTTCTTCTCACAGGGACATGGAGAATTCCGTCAAAAGGACTCTGATGTTTCTTCCTaGACTGTGTCACCAGATTCC | + |
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Preference number: 4 (lower is better) Translates to: TEGDIFFSQGHGEFRQKDSDVSS*TVSPDS Trigger: GGAATCTGGTGACACAGTTCAGGAAGAAACATCAGA...GTCCTTTTGACGGAATTCTCCATGTCCCTGTGAGAAGAAAATATCTCCTTCCGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR TCA 90 bp | ACGGAAGGAGATATTTTCTTCTCACAGGGACATGGAGAATTCCGTCAAAAGGACCTCCGAGTTAGGTTCTaGTGTTTCTTCCTGAACTGT | + |
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Preference number: 4 (lower is better) Translates to: TEGDIFFSQGHGEFRQKDLRVRF*CFFLNC Trigger: ACAGTTCAGGAAGAAACATCAGAACCTAACTCGGAG...GTCCTTTTGACGGAATTCTCCATGTCCCTGTGAGAAGAAAATATCTCCTTCCGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR TCA 90 bp | GGGACATGGAGAATTCCGTCAAAAGGACATTCAGATAGGGAGGAGAAATCTGGGGACCACTCCACTATGTaGGCATTTTCCTTTATATTT | + |
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Preference number: 4 (lower is better) Translates to: GTWRIPSKGHSDREEKSGDHSTM*AFSFIF Trigger: AAATATAAAGGAAAATGCTCACATAGTGGAGTGGTC...CCCAGATTTCTCCTCCCTATCTGAATGTCCTTTTGACGGAATTCTCCATGTCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR TCA 90 bp | GGAGATATTTTCTTCTCACAGGGACATGGAGAATTCCGTCAAAAGGACATTCAGTGTTCTCATGAGCTCTaGATTCACAGAGGCACTCTA | + |
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Preference number: 4 (lower is better) Translates to: GDIFFSQGHGEFRQKDIQCSHEL*IHRGTL Trigger: TAGAGTGCCTCTGTGAATTCAGAGCTCATGAGAACA...CTGAATGTCCTTTTGACGGAATTCTCCATGTCCCTGTGAGAAGAAAATATCTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR TCA 90 bp | GGAGATATTTTCTTCTCACAGGGACATGGAGAATTCCGTCAAAAGGACATTCAGCATCATTTGATGCTGTaGCAAGAACGTGATGGTCTG | + |
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Preference number: 4 (lower is better) Translates to: GDIFFSQGHGEFRQKDIQHHLML*QERDGL Trigger: CAGACCATCACGTTCTTGTCACAGCATCAAATGATG...CTGAATGTCCTTTTGACGGAATTCTCCATGTCCCTGTGAGAAGAAAATATCTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR TCA 90 bp | CACATTTTCTACGGAAGGAGATATTTTCTTCTCACAGGGACATGGAGAATTCCGGATGAAGCCATCATTTaGTGCTGTGACAAGAACGTG | + |
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Preference number: 4 (lower is better) Translates to: HIFYGRRYFLLTGTWRIPDEAII*CCDKNV Trigger: CACGTTCTTGTCACAGCATCAAATGATGGCTTCATC...CGGAATTCTCCATGTCCCTGTGAGAAGAAAATATCTCCTTCCGTAGAAAATGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR GCA 90 bp | GGAGATATTTTCTTCTCACAGGGACATGGAGAATTCCGTCAAAAGGACATTCAGCTTTTCCGACATGGTTaGCATTTTCCTCTTCTTGGC | + |
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Preference number: 4 (lower is better) Translates to: GDIFFSQGHGEFRQKDIQLFRHG*HFPLLG Trigger: GCCAAGAAGAGGAAAATGGCAACCATGTCGGAAAAG...CTGAATGTCCTTTTGACGGAATTCTCCATGTCCCTGTGAGAAGAAAATATCTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR CCA 90 bp | TCTACGGAAGGAGATATTTTCTTCTCACAGGGACATGGAGAATTCCGTCAAAAGAACTTGCCAGACGGGTaGATAGAAAGGAAAGTGACA | + |
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Preference number: 4 (lower is better) Translates to: STEGDIFFSQGHGEFRQKNLPDG*IERKVT Trigger: TGTCACTTTCCTTTCTATCCACCCGTCTGGCAAGTT...CTTTTGACGGAATTCTCCATGTCCCTGTGAGAAGAAAATATCTCCTTCCGTAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR GCA 90 bp | AGATATTTTCTTCTCACAGGGACATGGAGAATTCCGTCAAAAGGACATTCAGATTCGTCTCATCTTTGCTaGCAGAGACTACATAGCGAC | + |
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Preference number: 4 (lower is better) Translates to: RYFLLTGTWRIPSKGHSDSSHLC*QRLHSD Trigger: GTCGCTATGTAGTCTCTGGCAGCAAAGATGAGACGA...ATCTGAATGTCCTTTTGACGGAATTCTCCATGTCCCTGTGAGAAGAAAATATCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR GCA 90 bp | GGGACATGGAGAATTCCGTCAAAAGGACATTCAGATAGGGAGGAGAAATCTGGGACATCCACTTTATTCTaGACAACAACTATGTACTTC | + |
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Preference number: 4 (lower is better) Translates to: GTWRIPSKGHSDREEKSGTSTLF*TTTMYF Trigger: GAAGTACATAGTTGTTGTGCAGAATAAAGTGGATGT...CCCAGATTTCTCCTCCCTATCTGAATGTCCTTTTGACGGAATTCTCCATGTCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR CCA 90 bp | GCTGCACATTTTCTACGGAAGGAGATATTTTCTTCTCACAGGGACATGGAGAATAAGTGCTGGTTGCCATaGAATTTCAGGCAAGTTACT | + |
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Preference number: 4 (lower is better) Translates to: AAHFLRKEIFSSHRDMENKCWLP*NFRQVT Trigger: AGTAACTTGCCTGAAATTCCATGGCAACCAGCACTT...ATTCTCCATGTCCCTGTGAGAAGAAAATATCTCCTTCCGTAGAAAATGTGCAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR CCA 90 bp | AACAAAGCACCACCTAAAGAGCGGTTCTTTTTCTTAAGCTGCACATTTTCTACGCCACTGATTAAGTGCTaGTTGCCATGGAATTTCAGG | + |
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Preference number: 4 (lower is better) Translates to: NKAPPKERFFFLSCTFSTPLIKC*LPWNFR Trigger: CCTGAAATTCCATGGCAACCAGCACTTAATCAGTGG...CGTAGAAAATGTGCAGCTTAAGAAAAAGAACCGCTCTTTAGGTGGTGCTTTGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR CCA 90 bp | CATTTTCTACGGAAGGAGATATTTTCTTCTCACAGGGACATGGAGAATTCCGTCAAGAACGTGATGGTCTaGGACTTCAAAACTGACCAT | + |
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Preference number: 4 (lower is better) Translates to: HFLRKEIFSSHRDMENSVKNVMV*DFKTDH Trigger: ATGGTCAGTTTTGAAGTCCCAGACCATCACGTTCTT...GACGGAATTCTCCATGTCCCTGTGAGAAGAAAATATCTCCTTCCGTAGAAAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR CCA 90 bp | TACGGAAGGAGATATTTTCTTCTCACAGGGACATGGAGAATTCCGTCAAAAGGACTCACACAGCAAAGATaGAGGAACTTTCTTATCCTG | + |
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Preference number: 4 (lower is better) Translates to: YGRRYFLLTGTWRIPSKGLTQQR*RNFLIL Trigger: CAGGATAAGAAAGTTCCTCCATCTTTGCTGTGTGAG...TCCTTTTGACGGAATTCTCCATGTCCCTGTGAGAAGAAAATATCTCCTTCCGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR CCA 90 bp | AGATATTTTCTTCTCACAGGGACATGGAGAATTCCGTCAAAAGGACATTCAGATGCTATTTCCTTTTGTTaGCTGCTTGCTGTCACCACT | + |
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Preference number: 4 (lower is better) Translates to: RYFLLTGTWRIPSKGHSDAISFC*LLAVTT Trigger: AGTGGTGACAGCAAGCAGCCAACAAAAGGAAATAGC...ATCTGAATGTCCTTTTGACGGAATTCTCCATGTCCCTGTGAGAAGAAAATATCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR GCA 90 bp | CTGCACATTTTCTACGGAAGGAGATATTTTCTTCTCACAGGGACATGGAGAATTTTAATGTTTTATCGGTaGCAACAGACAGAGCCAACT | + |
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Preference number: 4 (lower is better) Translates to: LHIFYGRRYFLLTGTWRILMFYR*QQTEPT Trigger: AGTTGGCTCTGTCTGTTGGCACCGATAAAACATTAA...AATTCTCCATGTCCCTGTGAGAAGAAAATATCTCCTTCCGTAGAAAATGTGCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS TCA 90 bp | TCCATGTCTCCTGATGGCCACTCTTCGCGGGCCCGCGCTGTACCGTaGACCCAAACAGGACCTGCTCGTAGCTGCCGGCGACCAGCTCCA | + |
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Preference number: 5 (lower is better) Translates to: SMSPDGHSSRARAVP*TQTGPARSCRRPAP Trigger: TGGAGCTGGTCGCCGGCAGCTACGAGCAGGTCCTGTTTGGGTTCACGGTACAGCGCGGGCCCGCGAAGAGTGGCCATCAGGAGACATGGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS TCA 90 bp | ATCTCTTCACATCCCAGATGCAGATGTGGCCGTCTTCTGCCCCACTaGTTAAGTGCTGGTTGCCATGGAATTTCAGGCAAGTTACTGTGC | + |
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Preference number: 5 (lower is better) Translates to: ISSHPRCRCGRLLPH*LSAGCHGISGKLLC Trigger: GCACAGTAACTTGCCTGAAATTCCATGGCAACCAGCACTTAATCAGTGGGGCAGAAGACGGCCACATCTGCATCTGGGATGTGAAGAGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS GCA 90 bp | CCACCTTCCTTTTCATGTCATAAATGTGAATCGTCTCATCTTTGCTaGCAGAGACTACATAGCGACTGTTGGAGGCCAGCACCGACAGGG | + |
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Preference number: 5 (lower is better) Translates to: PPSFSCHKCESSHLC*QRLHSDCWRPAPTG Trigger: CCCTGTCGGTGCTGGCCTCCAACAGTCGCTATGTAGTCTCTGGCAGCAAAGATGAGACGATTCACATTTATGACATGAAAAGGAAGGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS GCA 90 bp | GCTCCACCTTCCTTTTCATGTCATAAATGTGAATCGTCTCATCTTTaGTGCCAGAGACTACATAGCGACTGTTGGAGGCCAGCACCGACA | + |
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Preference number: 5 (lower is better) Translates to: APPSFSCHKCESSHL*CQRLHSDCWRPAPT Trigger: TGTCGGTGCTGGCCTCCAACAGTCGCTATGTAGTCTCTGGCAGCAAAGATGAGACGATTCACATTTATGACATGAAAAGGAAGGTGGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS CCA 90 bp | TGCCATTTTCCTCTTCTTGGCTGTCACTGGGCTATTTCCTTTTGTTaGCTGCTTGCTGTCACCACTTACATCAGATTTCTCCGAGTTAGG | + |
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Preference number: 5 (lower is better) Translates to: CHFPLLGCHWAISFC*LLAVTTYIRFLRVR Trigger: CCTAACTCGGAGAAATCTGATGTAAGTGGTGACAGCAAGCAGCCAACAAAAGGAAATAGCCCAGTGACAGCCAAGAAGAGGAAAATGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR CAA 90 bp | AAAGCACCACCTAAAGAGCGGTTCTTTTTCTTAAGCTGCACATTTTCTACGGAATTCGATTGTCTTAGGTaGGTCAGGGCAGGGCTCTGC | + |
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Preference number: 5 (lower is better) Translates to: KAPPKERFFFLSCTFSTEFDCLR*VRAGLC Trigger: GCAGAGCCCTGCCCTGACCAACCTAAGACAATCGAA...TTCCGTAGAAAATGTGCAGCTTAAGAAAAAGAACCGCTCTTTAGGTGGTGCTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR CAA 90 bp | TGCACATTTTCTACGGAAGGAGATATTTTCTTCTCACAGGGACATGGAGAATTCAGCCTGGCACCAGTTTaGGCCTCACACAGCAAAGAT | + |
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Preference number: 5 (lower is better) Translates to: CTFSTEGDIFFSQGHGEFSLAPV*ASHSKD Trigger: ATCTTTGCTGTGTGAGGCCAAAACTGGTGCCAGGCT...GAATTCTCCATGTCCCTGTGAGAAGAAAATATCTCCTTCCGTAGAAAATGTGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR CAA 90 bp | AAAGCACCACCTAAAGAGCGGTTCTTTTTCTTAAGCTGCACATTTTCTACGGAAGGCTCGCCATTCCATTaGCTGCTCTGTCTAACCACA | + |
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Preference number: 5 (lower is better) Translates to: KAPPKERFFFLSCTFSTEGSPFH*LLCLTT Trigger: TGTGGTTAGACAGAGCAGCAAATGGAATGGCGAGCC...TTCCGTAGAAAATGTGCAGCTTAAGAAAAAGAACCGCTCTTTAGGTGGTGCTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR CAA 90 bp | TACGGAAGGAGATATTTTCTTCTCACAGGGACATGGAGAATTCCGTCAAAAGGACTGGGCTATTTCCTTTaGTTGGCTGCTTGCTGTCAC | + |
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Preference number: 5 (lower is better) Translates to: YGRRYFLLTGTWRIPSKGLGYFL*LAACCH Trigger: GTGACAGCAAGCAGCCAACAAAAGGAAATAGCCCAG...TCCTTTTGACGGAATTCTCCATGTCCCTGTGAGAAGAAAATATCTCCTTCCGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS GCA 90 bp | ATTTTCCTCTTCTTGGCTGTCACTGGGCTATTTCCTTTTGTTGGCTaGTTGCTGTCACCACTTACATCAGATTTCTCCGAGTTAGGTTCT | + |
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Preference number: 5 (lower is better) Translates to: IFLFLAVTGLFPFVG*LLSPLTSDFSELGS Trigger: AGAACCTAACTCGGAGAAATCTGATGTAAGTGGTGACAGCAAGCAGCCAACAAAAGGAAATAGCCCAGTGACAGCCAAGAAGAGGAAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR CAA 90 bp | GGAGATATTTTCTTCTCACAGGGACATGGAGAATTCCGTCAAAAGGACATTCAGGCCATTTTCCTCTTCTaGGCTGTCACTGGGCTATTT | + |
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Preference number: 5 (lower is better) Translates to: GDIFFSQGHGEFRQKDIQAIFLF*AVTGLF Trigger: AAATAGCCCAGTGACAGCCAAGAAGAGGAAAATGGC...CTGAATGTCCTTTTGACGGAATTCTCCATGTCCCTGTGAGAAGAAAATATCTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR CAA 90 bp | ACGGAAGGAGATATTTTCTTCTCACAGGGACATGGAGAATTCCGTCAAAAGGACTCTTTTCCGACATGGTaGCCATTTTCCTCTTCTTGG | + |
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Preference number: 5 (lower is better) Translates to: TEGDIFFSQGHGEFRQKDSFPTW*PFSSSW Trigger: CCAAGAAGAGGAAAATGGCAACCATGTCGGAAAAGA...GTCCTTTTGACGGAATTCTCCATGTCCCTGTGAGAAGAAAATATCTCCTTCCGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS TCA 90 bp | TTTCTTATCCTGTGGAAGCGTCCACATTTTGATGAAGCCATCATTTaGTGCTGTGACAAGAACGTGATGGTCTGGGACTTCAAAACTGAC | + |
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Preference number: 5 (lower is better) Translates to: FLILWKRPHFDEAII*CCDKNVMVWDFKTD Trigger: GTCAGTTTTGAAGTCCCAGACCATCACGTTCTTGTCACAGCATCAAATGATGGCTTCATCAAAATGTGGACGCTTCCACAGGATAAGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS TCA 90 bp | CTGCTTGCTGTCACCACTTACATCAGATTTCTCCGAGTTAGGTTCTaGTGTTTCTTCCTGAACTGTGTCACCAGATTCCTTTTCGATTGT | + |
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Preference number: 5 (lower is better) Translates to: LLAVTTYIRFLRVRF*CFFLNCVTRFLFDC Trigger: ACAATCGAAAAGGAATCTGGTGACACAGTTCAGGAAGAAACATCAGAACCTAACTCGGAGAAATCTGATGTAAGTGGTGACAGCAAGCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR CAA 90 bp | AACAAAGCACCACCTAAAGAGCGGTTCTTTTTCTTAAGCTGCACATTTTCTACGCCTTTTGTTGGCTGCTaGCTGTCACCACTTACATCA | + |
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Preference number: 5 (lower is better) Translates to: NKAPPKERFFFLSCTFSTPFVGC*LSPLTS Trigger: TGATGTAAGTGGTGACAGCAAGCAGCCAACAAAAGG...CGTAGAAAATGTGCAGCTTAAGAAAAAGAACCGCTCTTTAGGTGGTGCTTTGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS TCA 90 bp | CCACTTACATCAGATTTCTCCGAGTTAGGTTCTGATGTTTCTTCCTaGACTGTGTCACCAGATTCCTTTTCGATTGTCTTAGGTTGGTCA | + |
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Preference number: 5 (lower is better) Translates to: PLTSDFSELGSDVSS*TVSPDSFSIVLGWS Trigger: TGACCAACCTAAGACAATCGAAAAGGAATCTGGTGACACAGTTCAGGAAGAAACATCAGAACCTAACTCGGAGAAATCTGATGTAAGTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS-3UTR CAA 90 bp | ACATTTTCTACGGAAGGAGATATTTTCTTCTCACAGGGACATGGAGAATTCCGTCTGATTAAGTGCTGGTaGCCATGGAATTTCAGGCAA | + |
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Preference number: 5 (lower is better) Translates to: TFSTEGDIFFSQGHGEFRLIKCW*PWNFRQ Trigger: TTGCCTGAAATTCCATGGCAACCAGCACTTAATCAG...ACGGAATTCTCCATGTCCCTGTGAGAAGAAAATATCTCCTTCCGTAGAAAATGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS TCA 72 bp | CCTGATGGCCACTCTTCGCGGGCCCGCGCTGTACCGTaGACCCAAACAGGACCTGCTCGTAGCTGCCGGCGA | + |
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Preference number: 6 (lower is better) Translates to: PDGHSSRARAVP*TQTGPARSCRR Trigger: TCGCCGGCAGCTACGAGCAGGTCCTGTTTGGGTTCACGGTACAGCGCGGGCCCGCGAAGAGTGGCCATCAGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS CCA 72 bp | TCTCATCTTTGCTGCCAGAGACTACATAGCGACTGTTaGAGGCCAGCACCGACAGGGAGGCAGTGTGCGAGT | + |
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Preference number: 6 (lower is better) Translates to: SHLCCQRLHSDC*RPAPTGRQCAS Trigger: ACTCGCACACTGCCTCCCTGTCGGTGCTGGCCTCCAACAGTCGCTATGTAGTCTCTGGCAGCAAAGATGAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS GCA 72 bp | TTCGATTGTCTTAGGTTGGTCAGGGCAGGGCTCTGCTaGTGGAGGAAGGCTCGCCATTCCATTTGCTGCTCT | + |
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Preference number: 6 (lower is better) Translates to: FDCLRLVRAGLC*WRKARHSICCS Trigger: AGAGCAGCAAATGGAATGGCGAGCCTTCCTCCAGCAGCAGAGCCCTGCCCTGACCAACCTAAGACAATCGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS CCA 72 bp | ACTGTGTCACCAGATTCCTTTTCGATTGTCTTAGGTTaGTCAGGGCAGGGCTCTGCTGCTGGAGGAAGGCTC | + |
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Preference number: 6 (lower is better) Translates to: TVSPDSFSIVLG*SGQGSAAGGRL Trigger: GAGCCTTCCTCCAGCAGCAGAGCCCTGCCCTGACCAACCTAAGACAATCGAAAAGGAATCTGGTGACACAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS CAA 90 bp | TTCTTCCTGAACTGTGTCACCAGATTCCTTTTCGATTGTCTTAGGTaGGTCAGGGCAGGGCTCTGCTGCTGGAGGAAGGCTCGCCATTCC | + |
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Preference number: 6 (lower is better) Translates to: FFLNCVTRFLFDCLR*VRAGLCCWRKARHS Trigger: GGAATGGCGAGCCTTCCTCCAGCAGCAGAGCCCTGCCCTGACCAACCTAAGACAATCGAAAAGGAATCTGGTGACACAGTTCAGGAAGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS TCA 72 bp | CATCCCAGATGCAGATGTGGCCGTCTTCTGCCCCACTaGTTAAGTGCTGGTTGCCATGGAATTTCAGGCAAG | + |
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Preference number: 6 (lower is better) Translates to: HPRCRCGRLLPH*LSAGCHGISGK Trigger: CTTGCCTGAAATTCCATGGCAACCAGCACTTAATCAGTGGGGCAGAAGACGGCCACATCTGCATCTGGGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS CCA 72 bp | CAGATGTGGCCGTCTTCTGCCCCACTGATTAAGTGCTaGTTGCCATGGAATTTCAGGCAAGTTACTGTGCCA | + |
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Preference number: 6 (lower is better) Translates to: QMWPSSAPLIKC*LPWNFRQVTVP Trigger: TGGCACAGTAACTTGCCTGAAATTCCATGGCAACCAGCACTTAATCAGTGGGGCAGAAGACGGCCACATCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS CCA 72 bp | CAGCCTGGCACCAGTTTTGGCCTCACACAGCAAAGATaGAGGAACTTTCTTATCCTGTGGAAGCGTCCACAT | + |
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Preference number: 6 (lower is better) Translates to: QPGTSFGLTQQR*RNFLILWKRPH Trigger: ATGTGGACGCTTCCACAGGATAAGAAAGTTCCTCCATCTTTGCTGTGTGAGGCCAAAACTGGTGCCAGGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS CAA 90 bp | GCTCTGTCTAACCACACAGTAAGACATGTCAGCCTGGCACCAGTTTaGGCCTCACACAGCAAAGATGGAGGAACTTTCTTATCCTGTGGA | + |
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Preference number: 6 (lower is better) Translates to: ALSNHTVRHVSLAPV*ASHSKDGGTFLSCG Trigger: TCCACAGGATAAGAAAGTTCCTCCATCTTTGCTGTGTGAGGCCAAAACTGGTGCCAGGCTGACATGTCTTACTGTGTGGTTAGACAGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS TCA 72 bp | GACGGGTGGATAGAAAGGAAAGTGACATGTCCCCTGTaGGCTTTAAAGGTCTTCAGGCACTTCCATCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: DGWIERKVTCPL*ALKVFRHFHLF Trigger: GAAGAGATGGAAGTGCCTGAAGACCTTTAAAGCTCACAGGGGACATGTCACTTTCCTTTCTATCCACCCGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS CAA 90 bp | TGGTTGCCATTTTCCTCTTCTTGGCTGTCACTGGGCTATTTCCTTTaGTTGGCTGCTTGCTGTCACCACTTACATCAGATTTCTCCGAGT | + |
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Preference number: 6 (lower is better) Translates to: WLPFSSSWLSLGYFL*LAACCHHLHQISPS Trigger: ACTCGGAGAAATCTGATGTAAGTGGTGACAGCAAGCAGCCAACAAAAGGAAATAGCCCAGTGACAGCCAAGAAGAGGAAAATGGCAACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS TCA 72 bp | CTGTGGAAGCGTCCACATTTTGATGAAGCCATCATTTaGTGCTGTGACAAGAACGTGATGGTCTGGGACTTC | + |
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Preference number: 6 (lower is better) Translates to: LWKRPHFDEAII*CCDKNVMVWDF Trigger: GAAGTCCCAGACCATCACGTTCTTGTCACAGCATCAAATGATGGCTTCATCAAAATGTGGACGCTTCCACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS CCA 72 bp | CCTCTTCTTGGCTGTCACTGGGCTATTTCCTTTTGTTaGCTGCTTGCTGTCACCACTTACATCAGATTTCTC | + |
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Preference number: 6 (lower is better) Translates to: PLLGCHWAISFC*LLAVTTYIRFL Trigger: GAGAAATCTGATGTAAGTGGTGACAGCAAGCAGCCAACAAAAGGAAATAGCCCAGTGACAGCCAAGAAGAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS CAA 72 bp | AACCACACAGTAAGACATGTCAGCCTGGCACCAGTTTaGGCCTCACACAGCAAAGATGGAGGAACTTTCTTA | + |
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Preference number: 6 (lower is better) Translates to: NHTVRHVSLAPV*ASHSKDGGTFL Trigger: TAAGAAAGTTCCTCCATCTTTGCTGTGTGAGGCCAAAACTGGTGCCAGGCTGACATGTCTTACTGTGTGGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS CAA 90 bp | TTCCTCTTCTTGGCTGTCACTGGGCTATTTCCTTTTGTTGGCTGCTaGCTGTCACCACTTACATCAGATTTCTCCGAGTTAGGTTCTGAT | + |
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Preference number: 6 (lower is better) Translates to: FLFLAVTGLFPFVGC*LSPLTSDFSELGSD Trigger: ATCAGAACCTAACTCGGAGAAATCTGATGTAAGTGGTGACAGCAAGCAGCCAACAAAAGGAAATAGCCCAGTGACAGCCAAGAAGAGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS CAA 72 bp | CTTAATGTTTTATCGGTGCCAACAGACAGAGCCAACTaGCCAGACGGGTGGATAGAAAGGAAAGTGACATGT | + |
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Preference number: 6 (lower is better) Translates to: LNVLSVPTDRAN*PDGWIERKVTC Trigger: ACATGTCACTTTCCTTTCTATCCACCCGTCTGGCAAGTTGGCTCTGTCTGTTGGCACCGATAAAACATTAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS GCA 72 bp | TTTTCATGTCATAAATGTGAATCGTCTCATCTTTGCTaGCAGAGACTACATAGCGACTGTTGGAGGCCAGCA | + |
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Preference number: 6 (lower is better) Translates to: FSCHKCESSHLC*QRLHSDCWRPA Trigger: TGCTGGCCTCCAACAGTCGCTATGTAGTCTCTGGCAGCAAAGATGAGACGATTCACATTTATGACATGAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS CAA 72 bp | GGAGGAACTTTCTTATCCTGTGGAAGCGTCCACATTTaGATGAAGCCATCATTTGATGCTGTGACAAGAACG | + |
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Preference number: 6 (lower is better) Translates to: GGTFLSCGSVHI*MKPSFDAVTRT Trigger: CGTTCTTGTCACAGCATCAAATGATGGCTTCATCAAAATGTGGACGCTTCCACAGGATAAGAAAGTTCCTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS CAA 72 bp | TTTTCCTCTTCTTGGCTGTCACTGGGCTATTTCCTTTaGTTGGCTGCTTGCTGTCACCACTTACATCAGATT | + |
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Preference number: 6 (lower is better) Translates to: FSSSWLSLGYFL*LAACCHHLHQI Trigger: AATCTGATGTAAGTGGTGACAGCAAGCAGCCAACAAAAGGAAATAGCCCAGTGACAGCCAAGAAGAGGAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS TCA 72 bp | GTCACCACTTACATCAGATTTCTCCGAGTTAGGTTCTaGTGTTTCTTCCTGAACTGTGTCACCAGATTCCTT | + |
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Preference number: 6 (lower is better) Translates to: VTTYIRFLRVRF*CFFLNCVTRFL Trigger: AAGGAATCTGGTGACACAGTTCAGGAAGAAACATCAGAACCTAACTCGGAGAAATCTGATGTAAGTGGTGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS CAA 72 bp | CTTTATTCTGCACAACAACTATGTACTTCCCTCCACTaGGGGACCACTCCACTATGTGAGCATTTTCCTTTA | + |
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Preference number: 6 (lower is better) Translates to: LYSAQQLCTSLH*GTTPLCEHFPL Trigger: TAAAGGAAAATGCTCACATAGTGGAGTGGTCCCCAAGTGGAGGGAAGTACATAGTTGTTGTGCAGAATAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS TCA 72 bp | TTGATGAAGCCATCATTTGATGCTGTGACAAGAACGTaGTGGTCTGGGACTTCAAAACTGACCATGTCTTTT | + |
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Preference number: 6 (lower is better) Translates to: LMKPSFDAVTRT*WSGTSKLTMSF Trigger: AAAAGACATGGTCAGTTTTGAAGTCCCAGACCATCACGTTCTTGTCACAGCATCAAATGATGGCTTCATCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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| CDS CCA 72 bp | TTTATTCTGCACAACAACTATGTACTTCCCTCCACTTaGGGACCACTCCACTATGTGAGCATTTTCCTTTAT | + |
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Preference number: 6 (lower is better) Translates to: FILHNNYVLPST*GPLHYVSIFLY Trigger: ATAAAGGAAAATGCTCACATAGTGGAGTGGTCCCCAAGTGGAGGGAAGTACATAGTTGTTGTGCAGAATAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046951.10 |
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