Pregenerated sensors for PAIP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025451Ensembl transcript IDs: ENSMUST00000026520.14
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TCCTCAATGAAGAATCTTGGTTCCTTAGCTGGTGTTCTAAGCCCCACCCACCCCTCCGTCCTGCACCTTTaGAGTAGCAATTGGCGGAAG | + |
|
Preference number: 4 (lower is better) Translates to: SSMKNLGSLAGVLSPTHPSVLHL*SSNWRK Trigger: CTTCCGCCAATTGCTACTTCAAAGGTGCAGGACGGA...GGGGTGGGTGGGGCTTAGAACACCAGCTAAGGAACCAAGATTCTTCATTGAGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026520.14 |
||
| CDS-3UTR TCA 90 bp | TCCTCAATGAAGAATCTTGGTTCCTTAGCTGGTGTTCTAAGCCCCACCCACCCCATCCTGAACGTATTCTaGGAGAGTCGGGTAATCCTC | + |
|
Preference number: 4 (lower is better) Translates to: SSMKNLGSLAGVLSPTHPILNVF*ESRVIL Trigger: GAGGATTACCCGACTCTCTCAGAATACGTTCAGGAT...GGGGTGGGTGGGGCTTAGAACACCAGCTAAGGAACCAAGATTCTTCATTGAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026520.14 |
||
| CDS-3UTR GCA 90 bp | TCCTCAATGAAGAATCTTGGTTCCTTAGCTGGTGTTCTAAGCCCCACCCACCCCTCTGTTTTACATCTCTaGTGCAGTTTGCATCTAGGA | + |
|
Preference number: 4 (lower is better) Translates to: SSMKNLGSLAGVLSPTHPSVLHL*CSLHLG Trigger: TCCTAGATGCAAACTGCAGCAGAGATGTAAAACAGA...GGGGTGGGTGGGGCTTAGAACACCAGCTAAGGAACCAAGATTCTTCATTGAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000026520.14 |
||
| CDS-3UTR CAA 90 bp | TCCTCAATGAAGAATCTTGGTTCCTTAGCTGGTGTTCTAAGCCCCACCCACCCCTCTCTGGGGCTTCGTTaGTTCTGGAGCCCGATCGAA | + |
|
Preference number: 5 (lower is better) Translates to: SSMKNLGSLAGVLSPTHPSLGLR*FWSPIE Trigger: TTCGATCGGGCTCCAGAACAAACGAAGCCCCAGAGA...GGGGTGGGTGGGGCTTAGAACACCAGCTAAGGAACCAAGATTCTTCATTGAGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000026520.14 |
||
| CDS-3UTR CAA 90 bp | TCCTCAATGAAGAATCTTGGTTCCTTAGCTGGTGTTCTAAGCCCCACCCACCCCGATAGACGTGGCCTGTaGGTAGATAAGTTCCACAAG | + |
|
Preference number: 5 (lower is better) Translates to: SSMKNLGSLAGVLSPTHPDRRGL*VDKFHK Trigger: CTTGTGGAACTTATCTACCAACAGGCCACGTCTATC...GGGGTGGGTGGGGCTTAGAACACCAGCTAAGGAACCAAGATTCTTCATTGAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026520.14 |
||
| CDS-3UTR CAA 90 bp | TCCTCAATGAAGAATCTTGGTTCCTTAGCTGGTGTTCTAAGCCCCACCCACCCCCTCTTGATACTTTTCTaGGTAATCTGGGTCCGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: SSMKNLGSLAGVLSPTHPLLILF*VIWVRC Trigger: GCAGCGGACCCAGATTACCAAGAAAAGTATCAAGAG...GGGGTGGGTGGGGCTTAGAACACCAGCTAAGGAACCAAGATTCTTCATTGAGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000026520.14 |
||