Pregenerated sensors for PAICS (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029247Ensembl transcript IDs: ENSMUST00000031160.16, ENSMUST00000117536.8, ENSMUST00000120912.8, ENSMUST00000153648.2
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CAATACACAGCTCAGGGTGGCCCTGAACTTAAGAGGTCCTGCTGCTaGCTCAGCCTCTGGAGTGCTAAGGTTACAGGGACATATCACTTT | + |
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Preference number: 1 (lower is better) Translates to: QYTAQGGPELKRSCC*LSLWSAKVTGTYHF Trigger: AAAGTGATATGTCCCTGTAACCTTAGCACTCCAGAGGCTGAGGCAGCAGCAGGACCTCTTAAGTTCAGGGCCACCCTGAGCTGTGTATTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| 3UTR CCA 90 bp | GAGATGCTGGGAAGCAAATTCAGGTCGTCTGCAAGAGAGCCACACTaGTTCTTCATAGTGGTTCAGACAGCAGACACATTGTTCCAGTTC | + |
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Preference number: 1 (lower is better) Translates to: EMLGSKFRSSAREPH*FFIVVQTADTLFQF Trigger: GAACTGGAACAATGTGTCTGCTGTCTGAACCACTATGAAGAACCAGTGTGGCTCTCTTGCAGACGACCTGAATTTGCTTCCCAGCATCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| 3UTR-3UTR GCA 90 bp | CAGACACATTGTTCCAGTTCCATAGTTACATATTTACCCAACAGTGACTATACAAAGAGGTCCTGCTGCTaGCTCAGCCTCTGGAGTGCT | + |
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Preference number: 2 (lower is better) Translates to: QTHCSSSIVTYLPNSDYTKRSCC*LSLWSA Trigger: AGCACTCCAGAGGCTGAGGCAGCAGCAGGACCTCTT...TGTATAGTCACTGTTGGGTAAATATGTAACTATGGAACTGGAACAATGTGTCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| 3UTR-3UTR GCA 90 bp | ACAGAGCGTGAGAATAAATTTAGTAGTGTCATGCCAATTTTACTAGCTAGAAAGGAACTTAAGAGGTCCTaGTGCTGCCTCAGCCTCTGG | + |
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Preference number: 2 (lower is better) Translates to: TERENKFSSVMPILLARKELKRS*CCLSLW Trigger: CCAGAGGCTGAGGCAGCAGCAGGACCTCTTAAGTTC...CTTTCTAGCTAGTAAAATTGGCATGACACTACTAAATTTATTCTCACGCTCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| 3UTR-3UTR TCA 90 bp | ACAGAGCGTGAGAATAAATTTAGTAGTGTCATGCCAATTTTACTAGCTAGAAAGCCCTCCACGGCAAGTTaGGTCTCAATACACAGCTCA | + |
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Preference number: 2 (lower is better) Translates to: TERENKFSSVMPILLARKPSTAS*VSIHSS Trigger: TGAGCTGTGTATTGAGACTCAACTTGCCGTGGAGGG...CTTTCTAGCTAGTAAAATTGGCATGACACTACTAAATTTATTCTCACGCTCTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| 3UTR GCA 72 bp | GCTCAGGGTGGCCCTGAACTTAAGAGGTCCTGCTGCTaGCTCAGCCTCTGGAGTGCTAAGGTTACAGGGACA | + |
|
Preference number: 3 (lower is better) Translates to: AQGGPELKRSCC*LSLWSAKVTGT Trigger: TGTCCCTGTAACCTTAGCACTCCAGAGGCTGAGGCAGCAGCAGGACCTCTTAAGTTCAGGGCCACCCTGAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| 3UTR GCA 72 bp | ACAGCTCAGGGTGGCCCTGAACTTAAGAGGTCCTGCTaGTGCCTCAGCCTCTGGAGTGCTAAGGTTACAGGG | + |
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Preference number: 3 (lower is better) Translates to: TAQGGPELKRSC*CLSLWSAKVTG Trigger: CCCTGTAACCTTAGCACTCCAGAGGCTGAGGCAGCAGCAGGACCTCTTAAGTTCAGGGCCACCCTGAGCTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| 3UTR CCA 72 bp | CCTGAACTTAAGAGGTCCTGCTGCTGCCTCAGCCTCTaGAGTGCTAAGGTTACAGGGACATATCACTTTGTA | + |
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Preference number: 3 (lower is better) Translates to: PELKRSCCCLSL*SAKVTGTYHFV Trigger: TACAAAGTGATATGTCCCTGTAACCTTAGCACTCCAGAGGCTGAGGCAGCAGCAGGACCTCTTAAGTTCAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| 3UTR GCA 72 bp | GTCTACAGAGATGCTGGGAAGCAAATTCAGGTCGTCTaGAAGAGAGCCACACTGGTTCTTCATAGTGGTTCA | + |
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Preference number: 3 (lower is better) Translates to: VYRDAGKQIQVV*KRATLVLHSGS Trigger: TGAACCACTATGAAGAACCAGTGTGGCTCTCTTGCAGACGACCTGAATTTGCTTCCCAGCATCTCTGTAGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR GCA 90 bp | GCTCAGGGTGGCCCTGAACTTAAGAGGTCCTGCTGCTGCCTCAGCCTCTGGAGTTGGAGATGGCGGCTTTaGCTTCCAGGTGGTTCTTCC | + |
|
Preference number: 4 (lower is better) Translates to: AQGGPELKRSCCCLSLWSWRWRL*LPGGSS Trigger: GGAAGAACCACCTGGAAGGCAAAGCCGCCATCTCCA...ACTCCAGAGGCTGAGGCAGCAGCAGGACCTCTTAAGTTCAGGGCCACCCTGAGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR CCA 90 bp | AACTTAAGAGGTCCTGCTGCTGCCTCAGCCTCTGGAGTGCTAAGGTTACAGGGACTGAGCGCCCCAGTCTaGTGTGATCGGGGGACAGCT | + |
|
Preference number: 4 (lower is better) Translates to: NLRGPAAASASGVLRLQGLSAPV*CDRGTA Trigger: AGCTGTCCCCCGATCACACCAGACTGGGGCGCTCAG...TCCCTGTAACCTTAGCACTCCAGAGGCTGAGGCAGCAGCAGGACCTCTTAAGTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR TCA 90 bp | GCTCAGGGTGGCCCTGAACTTAAGAGGTCCTGCTGCTGCCTCAGCCTCTGGAGTACTGACTGTCTGACTTaGGAAGCAACTCCACTCGGT | + |
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Preference number: 4 (lower is better) Translates to: AQGGPELKRSCCCLSLWSTDCLT*EATPLG Trigger: ACCGAGTGGAGTTGCTTCTCAAGTCAGACAGTCAGT...ACTCCAGAGGCTGAGGCAGCAGCAGGACCTCTTAAGTTCAGGGCCACCCTGAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR GCA 90 bp | CTTAAGAGGTCCTGCTGCTGCCTCAGCCTCTGGAGTGCTAAGGTTACAGGGACATGGAGATGGCGGCTTTaGCTTCCAGGTGGTTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: LKRSCCCLSLWSAKVTGTWRWRL*LPGGSS Trigger: GGAAGAACCACCTGGAAGGCAAAGCCGCCATCTCCA...TGTCCCTGTAACCTTAGCACTCCAGAGGCTGAGGCAGCAGCAGGACCTCTTAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR CCA 90 bp | TGCCTCAGCCTCTGGAGTGCTAAGGTTACAGGGACATATCACTTTGTAGAGCTACTGAGCGCCCCAGTCTaGTGTGATCGGGGGACAGCT | + |
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Preference number: 4 (lower is better) Translates to: CLSLWSAKVTGTYHFVELLSAPV*CDRGTA Trigger: AGCTGTCCCCCGATCACACCAGACTGGGGCGCTCAG...TAGCTCTACAAAGTGATATGTCCCTGTAACCTTAGCACTCCAGAGGCTGAGGCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR GCA 90 bp | CTTAAGAGGTCCTGCTGCTGCCTCAGCCTCTGGAGTGCTAAGGTTACAGGGACAGAGGAAAGACCCAGTTaGTATTCTTCGGCACACCCA | + |
|
Preference number: 4 (lower is better) Translates to: LKRSCCCLSLWSAKVTGTEERPS*YSSAHP Trigger: TGGGTGTGCCGAAGAATAGCAACTGGGTCTTTCCTC...TGTCCCTGTAACCTTAGCACTCCAGAGGCTGAGGCAGCAGCAGGACCTCTTAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR CCA 90 bp | CTTAAGAGGTCCTGCTGCTGCCTCAGCCTCTGGAGTGCTAAGGTTACAGGGACAAACAGCCAATACCACTaGGCAGTCGAAGAGATGACC | + |
|
Preference number: 4 (lower is better) Translates to: LKRSCCCLSLWSAKVTGTNSQYH*AVEEMT Trigger: GGTCATCTCTTCGACTGCCCAGTGGTATTGGCTGTT...TGTCCCTGTAACCTTAGCACTCCAGAGGCTGAGGCAGCAGCAGGACCTCTTAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR TCA 90 bp | AACTTAAGAGGTCCTGCTGCTGCCTCAGCCTCTGGAGTGCTAAGGTTACAGGGAGAAATATGCAGCTGGTaGTCTTGTTGGAGATGGCGG | + |
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Preference number: 4 (lower is better) Translates to: NLRGPAAASASGVLRLQGEICSW*SCWRWR Trigger: CCGCCATCTCCAACAAGATCACCAGCTGCATATTTC...TCCCTGTAACCTTAGCACTCCAGAGGCTGAGGCAGCAGCAGGACCTCTTAAGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR TCA 90 bp | AACTTAAGAGGTCCTGCTGCTGCCTCAGCCTCTGGAGTGCTAAGGTTACAGGGAACTGACTGTCTGACTTaGGAAGCAACTCCACTCGGT | + |
|
Preference number: 4 (lower is better) Translates to: NLRGPAAASASGVLRLQGTDCLT*EATPLG Trigger: ACCGAGTGGAGTTGCTTCTCAAGTCAGACAGTCAGT...TCCCTGTAACCTTAGCACTCCAGAGGCTGAGGCAGCAGCAGGACCTCTTAAGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR GCA 90 bp | AACTTAAGAGGTCCTGCTGCTGCCTCAGCCTCTGGAGTGCTAAGGTTACAGGGAGAGGAAAGACCCAGTTaGTATTCTTCGGCACACCCA | + |
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Preference number: 4 (lower is better) Translates to: NLRGPAAASASGVLRLQGEERPS*YSSAHP Trigger: TGGGTGTGCCGAAGAATAGCAACTGGGTCTTTCCTC...TCCCTGTAACCTTAGCACTCCAGAGGCTGAGGCAGCAGCAGGACCTCTTAAGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR CCA 90 bp | AACTTAAGAGGTCCTGCTGCTGCCTCAGCCTCTGGAGTGCTAAGGTTACAGGGAAACAGCCAATACCACTaGGCAGTCGAAGAGATGACC | + |
|
Preference number: 4 (lower is better) Translates to: NLRGPAAASASGVLRLQGNSQYH*AVEEMT Trigger: GGTCATCTCTTCGACTGCCCAGTGGTATTGGCTGTT...TCCCTGTAACCTTAGCACTCCAGAGGCTGAGGCAGCAGCAGGACCTCTTAAGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR TCA 90 bp | TGCCTCAGCCTCTGGAGTGCTAAGGTTACAGGGACATATCACTTTGTAGAGCTACACACTGGGGTGCAATaGAAGCAGTCTCCCCGCATT | + |
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Preference number: 4 (lower is better) Translates to: CLSLWSAKVTGTYHFVELHTGVQ*KQSPRI Trigger: AATGCGGGGAGACTGCTTTCATTGCACCCCAGTGTG...TAGCTCTACAAAGTGATATGTCCCTGTAACCTTAGCACTCCAGAGGCTGAGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR GCA 90 bp | TGCCTCAGCCTCTGGAGTGCTAAGGTTACAGGGACATATCACTTTGTAGAGCTATGGAGATGGCGGCTTTaGCTTCCAGGTGGTTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: CLSLWSAKVTGTYHFVELWRWRL*LPGGSS Trigger: GGAAGAACCACCTGGAAGGCAAAGCCGCCATCTCCA...TAGCTCTACAAAGTGATATGTCCCTGTAACCTTAGCACTCCAGAGGCTGAGGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR GCA 90 bp | GCTCAGGGTGGCCCTGAACTTAAGAGGTCCTGCTGCTGCCTCAGCCTCTGGAGTATCCCCTTCATATTCTaGTTTAATCCTCAAAGTCTC | + |
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Preference number: 4 (lower is better) Translates to: AQGGPELKRSCCCLSLWSIPFIF*FNPQSL Trigger: GAGACTTTGAGGATTAAAGCAGAATATGAAGGGGAT...ACTCCAGAGGCTGAGGCAGCAGCAGGACCTCTTAAGTTCAGGGCCACCCTGAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR CCA 90 bp | AACTTAAGAGGTCCTGCTGCTGCCTCAGCCTCTGGAGTGCTAAGGTTACAGGGATGCTCGCTCGAAGTTTaGCCCACACCAAATGATTGT | + |
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Preference number: 4 (lower is better) Translates to: NLRGPAAASASGVLRLQGCSLEV*PTPNDC Trigger: ACAATCATTTGGTGTGGGCCAAACTTCGAGCGAGCA...TCCCTGTAACCTTAGCACTCCAGAGGCTGAGGCAGCAGCAGGACCTCTTAAGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR TCA 90 bp | CTTAAGAGGTCCTGCTGCTGCCTCAGCCTCTGGAGTGCTAAGGTTACAGGGACAACAAATTGCATTGTCTaGCCTTCTTATCAGCCTGCT | + |
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Preference number: 4 (lower is better) Translates to: LKRSCCCLSLWSAKVTGTTNCIV*PSYQPA Trigger: AGCAGGCTGATAAGAAGGTCAGACAATGCAATTTGT...TGTCCCTGTAACCTTAGCACTCCAGAGGCTGAGGCAGCAGCAGGACCTCTTAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR GCA 90 bp | TGCCTCAGCCTCTGGAGTGCTAAGGTTACAGGGACATATCACTTTGTAGAGCTAACTGCAGGAGGACTCTaGCTGGGGTGTCTAACAACT | + |
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Preference number: 4 (lower is better) Translates to: CLSLWSAKVTGTYHFVELTAGGL*LGCLTT Trigger: AGTTGTTAGACACCCCAGGCAGAGTCCTCCTGCAGT...TAGCTCTACAAAGTGATATGTCCCTGTAACCTTAGCACTCCAGAGGCTGAGGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR TCA 90 bp | TGCCTCAGCCTCTGGAGTGCTAAGGTTACAGGGACATATCACTTTGTAGAGCTAGAAATATGCAGCTGGTaGTCTTGTTGGAGATGGCGG | + |
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Preference number: 4 (lower is better) Translates to: CLSLWSAKVTGTYHFVELEICSW*SCWRWR Trigger: CCGCCATCTCCAACAAGATCACCAGCTGCATATTTC...TAGCTCTACAAAGTGATATGTCCCTGTAACCTTAGCACTCCAGAGGCTGAGGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR TCA 90 bp | TGCCTCAGCCTCTGGAGTGCTAAGGTTACAGGGACATATCACTTTGTAGAGCTACCCCGCATTTCTTGGTaGAAGCAGTTTTTATACCAG | + |
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Preference number: 4 (lower is better) Translates to: CLSLWSAKVTGTYHFVELPRISW*KQFLYQ Trigger: CTGGTATAAAAACTGCTTTCACCAAGAAATGCGGGG...TAGCTCTACAAAGTGATATGTCCCTGTAACCTTAGCACTCCAGAGGCTGAGGCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR CCA 90 bp | ACAGAGCGTGAGAATAAATTTAGTAGTGTCATGCCAATTTTACTAGCTAGAAAGCTGAGCGCCCCAGTCTaGTGTGATCGGGGGACAGCT | + |
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Preference number: 4 (lower is better) Translates to: TERENKFSSVMPILLARKLSAPV*CDRGTA Trigger: AGCTGTCCCCCGATCACACCAGACTGGGGCGCTCAG...CTTTCTAGCTAGTAAAATTGGCATGACACTACTAAATTTATTCTCACGCTCTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR TCA 90 bp | ACAGAGCGTGAGAATAAATTTAGTAGTGTCATGCCAATTTTACTAGCTAGAAAGCACACTGGGGTGCAATaGAAGCAGTCTCCCCGCATT | + |
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Preference number: 4 (lower is better) Translates to: TERENKFSSVMPILLARKHTGVQ*KQSPRI Trigger: AATGCGGGGAGACTGCTTTCATTGCACCCCAGTGTG...CTTTCTAGCTAGTAAAATTGGCATGACACTACTAAATTTATTCTCACGCTCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR GCA 90 bp | CAGACACATTGTTCCAGTTCCATAGTTACATATTTACCCAACAGTGACTATACAACTGCAGGAGGACTCTaGCTGGGGTGTCTAACAACT | + |
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Preference number: 4 (lower is better) Translates to: QTHCSSSIVTYLPNSDYTTAGGL*LGCLTT Trigger: AGTTGTTAGACACCCCAGGCAGAGTCCTCCTGCAGT...TGTATAGTCACTGTTGGGTAAATATGTAACTATGGAACTGGAACAATGTGTCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR TCA 90 bp | CAGACACATTGTTCCAGTTCCATAGTTACATATTTACCCAACAGTGACTATACAGAAATATGCAGCTGGTaGTCTTGTTGGAGATGGCGG | + |
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Preference number: 4 (lower is better) Translates to: QTHCSSSIVTYLPNSDYTEICSW*SCWRWR Trigger: CCGCCATCTCCAACAAGATCACCAGCTGCATATTTC...TGTATAGTCACTGTTGGGTAAATATGTAACTATGGAACTGGAACAATGTGTCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR CCA 90 bp | CAGACACATTGTTCCAGTTCCATAGTTACATATTTACCCAACAGTGACTATACATGCTCGCTCGAAGTTTaGCCCACACCAAATGATTGT | + |
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Preference number: 4 (lower is better) Translates to: QTHCSSSIVTYLPNSDYTCSLEV*PTPNDC Trigger: ACAATCATTTGGTGTGGGCCAAACTTCGAGCGAGCA...TGTATAGTCACTGTTGGGTAAATATGTAACTATGGAACTGGAACAATGTGTCTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR TCA 90 bp | GCTAAGGTTACAGGGACATATCACTTTGTAGAGCTAGAAATATTAGTAATATCCCCCCGCATTTCTTGGTaGAAGCAGTTTTTATACCAG | + |
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Preference number: 4 (lower is better) Translates to: AKVTGTYHFVELEILVISPRISW*KQFLYQ Trigger: CTGGTATAAAAACTGCTTTCACCAAGAAATGCGGGG...GGATATTACTAATATTTCTAGCTCTACAAAGTGATATGTCCCTGTAACCTTAGC 39% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR TCA 90 bp | GCTAAGGTTACAGGGACATATCACTTTGTAGAGCTAGAAATATTAGTAATATCCACAAATTGCATTGTCTaGCCTTCTTATCAGCCTGCT | + |
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Preference number: 4 (lower is better) Translates to: AKVTGTYHFVELEILVISTNCIV*PSYQPA Trigger: AGCAGGCTGATAAGAAGGTCAGACAATGCAATTTGT...GGATATTACTAATATTTCTAGCTCTACAAAGTGATATGTCCCTGTAACCTTAGC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR GCA 90 bp | CAGACACATTGTTCCAGTTCCATAGTTACATATTTACCCAACAGTGACTATACAATCCCCTTCATATTCTaGTTTAATCCTCAAAGTCTC | + |
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Preference number: 4 (lower is better) Translates to: QTHCSSSIVTYLPNSDYTIPFIF*FNPQSL Trigger: GAGACTTTGAGGATTAAAGCAGAATATGAAGGGGAT...TGTATAGTCACTGTTGGGTAAATATGTAACTATGGAACTGGAACAATGTGTCTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR GCA 90 bp | ACAGAGCGTGAGAATAAATTTAGTAGTGTCATGCCAATTTTACTAGCTAGAAAGATCCCCTTCATATTCTaGTTTAATCCTCAAAGTCTC | + |
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Preference number: 4 (lower is better) Translates to: TERENKFSSVMPILLARKIPFIF*FNPQSL Trigger: GAGACTTTGAGGATTAAAGCAGAATATGAAGGGGAT...CTTTCTAGCTAGTAAAATTGGCATGACACTACTAAATTTATTCTCACGCTCTGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR CAA 90 bp | CTTAAGAGGTCCTGCTGCTGCCTCAGCCTCTGGAGTGCTAAGGTTACAGGGACAACCCCAGGGTTCCTTTaGAGGAAAGACCCAGTTGCT | + |
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Preference number: 5 (lower is better) Translates to: LKRSCCCLSLWSAKVTGTTPGFL*RKDPVA Trigger: AGCAACTGGGTCTTTCCTCAAAAGGAACCCTGGGGT...TGTCCCTGTAACCTTAGCACTCCAGAGGCTGAGGCAGCAGCAGGACCTCTTAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR CAA 90 bp | GCTCAGGGTGGCCCTGAACTTAAGAGGTCCTGCTGCTGCCTCAGCCTCTGGAGTCACTGTGGATCATTATaGGCATCGTCCTTGAAGAAC | + |
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Preference number: 5 (lower is better) Translates to: AQGGPELKRSCCCLSLWSHCGSL*ASSLKN Trigger: GTTCTTCAAGGACGATGCCAATAATGATCCACAGTG...ACTCCAGAGGCTGAGGCAGCAGCAGGACCTCTTAAGTTCAGGGCCACCCTGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR CAA 90 bp | AACTTAAGAGGTCCTGCTGCTGCCTCAGCCTCTGGAGTGCTAAGGTTACAGGGAACCCCAGGGTTCCTTTaGAGGAAAGACCCAGTTGCT | + |
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Preference number: 5 (lower is better) Translates to: NLRGPAAASASGVLRLQGTPGFL*RKDPVA Trigger: AGCAACTGGGTCTTTCCTCAAAAGGAACCCTGGGGT...TCCCTGTAACCTTAGCACTCCAGAGGCTGAGGCAGCAGCAGGACCTCTTAAGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR CAA 90 bp | TGCCTCAGCCTCTGGAGTGCTAAGGTTACAGGGACATATCACTTTGTAGAGCTACACTGTGGATCATTATaGGCATCGTCCTTGAAGAAC | + |
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Preference number: 5 (lower is better) Translates to: CLSLWSAKVTGTYHFVELHCGSL*ASSLKN Trigger: GTTCTTCAAGGACGATGCCAATAATGATCCACAGTG...TAGCTCTACAAAGTGATATGTCCCTGTAACCTTAGCACTCCAGAGGCTGAGGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS-3UTR CAA 90 bp | GCTAAGGTTACAGGGACATATCACTTTGTAGAGCTAGAAATATTAGTAATATCCACCCCAGGGTTCCTTTaGAGGAAAGACCCAGTTGCT | + |
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Preference number: 5 (lower is better) Translates to: AKVTGTYHFVELEILVISTPGFL*RKDPVA Trigger: AGCAACTGGGTCTTTCCTCAAAAGGAACCCTGGGGT...GGATATTACTAATATTTCTAGCTCTACAAAGTGATATGTCCCTGTAACCTTAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031160.16 ENSMUST00000117536.8 ENSMUST00000120912.8 |
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| CDS CAA 72 bp | TTAGATGTAGTAACACATGAGATGTATACTGCATTCTaGATCGAAACAACTTCTCCCCTGGAAAATGACCCC | + |
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Preference number: 6 (lower is better) Translates to: LDVVTHEMYTAF*IETTSPLENDP Trigger: GGGGTCATTTTCCAGGGGAGAAGTTGTTTCGATCAAGAATGCAGTATACATCTCATGTGTTACTACATCTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153648.2 |
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