Pregenerated sensors for PAGR1B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000092534Ensembl transcript IDs: ENSMUST00000172958.7
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTGGGCGTCCCGGGACACAGGGTTGGCCACTATGCAGTAGTGGCGTaGTGGGACCGTCACCATGCGAACTGGGGCAAACAGTACCCTCTC | + |
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Preference number: 1 (lower is better) Translates to: LGVPGHRVGHYAVVA*WDRHHANWGKQYPL Trigger: GAGAGGGTACTGTTTGCCCCAGTTCGCATGGTGACGGTCCCACCACGCCACTACTGCATAGTGGCCAACCCTGTGTCCCGGGACGCCCAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| 3UTR CCA 90 bp | TCCCCTGGGTACAGAGGGAAGGGGTCCTGGGCTAGTCGGATCTCCTaGTCAGCGTGCCGGAGCCGGACTTGTCCTGTGACGTCAAACAAC | + |
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Preference number: 1 (lower is better) Translates to: SPGYRGKGSWASRIS*SACRSRTCPVTSNN Trigger: GTTGTTTGACGTCACAGGACAAGTCCGGCTCCGGCACGCTGACCAGGAGATCCGACTAGCCCAGGACCCCTTCCCTCTGTACCCAGGGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| 3UTR GCA 90 bp | ACAACACAGAACTCTGGGCGTCCCGGGACACAGGGTTGGCCACTATaGAGTAGTGGCGTGGTGGGACCGTCACCATGCGAACTGGGGCAA | + |
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Preference number: 1 (lower is better) Translates to: TTQNSGRPGTQGWPL*SSGVVGPSPCELGQ Trigger: TTGCCCCAGTTCGCATGGTGACGGTCCCACCACGCCACTACTGCATAGTGGCCAACCCTGTGTCCCGGGACGCCCAGAGTTCTGTGTTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| 3UTR CCA 90 bp | GGCGTCCCGGGACACAGGGTTGGCCACTATGCAGTAGTGGCGTGGTaGGACCGTCACCATGCGAACTGGGGCAAACAGTACCCTCTCATT | + |
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Preference number: 1 (lower is better) Translates to: GVPGHRVGHYAVVAW*DRHHANWGKQYPLI Trigger: AATGAGAGGGTACTGTTTGCCCCAGTTCGCATGGTGACGGTCCCACCACGCCACTACTGCATAGTGGCCAACCCTGTGTCCCGGGACGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| 3UTR GCA 90 bp | CAGGGTTGGCCACTATGCAGTAGTGGCGTGGTGGGACCGTCACCATaGGAACTGGGGCAAACAGTACCCTCTCATTGTCCTGCCGGATGT | + |
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Preference number: 1 (lower is better) Translates to: QGWPLCSSGVVGPSP*ELGQTVPSHCPAGC Trigger: ACATCCGGCAGGACAATGAGAGGGTACTGTTTGCCCCAGTTCGCATGGTGACGGTCCCACCACGCCACTACTGCATAGTGGCCAACCCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| 3UTR CCA 90 bp | TGGGGCAAACAGTACCCTCTCATTGTCCTGCCGGATGTAGGTCTTTaGTCCAACCTCTACACGGGACACATTACTGTTCTGGTCCAGCAC | + |
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Preference number: 1 (lower is better) Translates to: WGKQYPLIVLPDVGL*SNLYTGHITVLVQH Trigger: GTGCTGGACCAGAACAGTAATGTGTCCCGTGTAGAGGTTGGACCAAAGACCTACATCCGGCAGGACAATGAGAGGGTACTGTTTGCCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| 3UTR-3UTR TCA 90 bp | ACTTGTCCTGTGACGTCAAACAACACAGAACTCTGGGCGTCCCGGGACACAGGGCTTCAGTTGCCATGGTaGATCCCAAGCCCCGGCCTA | + |
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Preference number: 2 (lower is better) Translates to: TCPVTSNNTELWASRDTGLQLPW*IPSPGL Trigger: TAGGCCGGGGCTTGGGATTCACCATGGCAACTGAAG...CCCTGTGTCCCGGGACGCCCAGAGTTCTGTGTTGTTTGACGTCACAGGACAAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| 3UTR-3UTR GCA 90 bp | ACAACACAGAACTCTGGGCGTCCCGGGACACAGGGTTGGCCACTATGCAGTAGTGTGGGACCGTCACCATaGGAACTGGGGCAAACAGTA | + |
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Preference number: 2 (lower is better) Translates to: TTQNSGRPGTQGWPLCSSVGPSP*ELGQTV Trigger: TACTGTTTGCCCCAGTTCGCATGGTGACGGTCCCAC...ACTACTGCATAGTGGCCAACCCTGTGTCCCGGGACGCCCAGAGTTCTGTGTTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| 3UTR-3UTR CCA 90 bp | GCGTGGTGGGACCGTCACCATGCGAACTGGGGCAAACAGTACCCTCTCATTGTCATGGATGTAGTGGTATaGGGGGATGCGGATGATGGC | + |
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Preference number: 2 (lower is better) Translates to: AWWDRHHANWGKQYPLIVMDVVV*GDADDG Trigger: GCCATCATCCGCATCCCCCCATACCACTACATCCAT...GACAATGAGAGGGTACTGTTTGCCCCAGTTCGCATGGTGACGGTCCCACCACGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| 3UTR-3UTR CCA 90 bp | ACAACACAGAACTCTGGGCGTCCCGGGACACAGGGTTGGCCACTATGCAGTAGTCCGGATGTAGGTCTTTaGTCCAACCTCTACACGGGA | + |
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Preference number: 2 (lower is better) Translates to: TTQNSGRPGTQGWPLCSSPDVGL*SNLYTG Trigger: TCCCGTGTAGAGGTTGGACCAAAGACCTACATCCGG...ACTACTGCATAGTGGCCAACCCTGTGTCCCGGGACGCCCAGAGTTCTGTGTTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| 3UTR CAA 90 bp | CTGGGGCAAACAGTACCCTCTCATTGTCCTGCCGGATGTAGGTCTTaGGTCCAACCTCTACACGGGACACATTACTGTTCTGGTCCAGCA | + |
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Preference number: 2 (lower is better) Translates to: LGQTVPSHCPAGCRS*VQPLHGTHYCSGPA Trigger: TGCTGGACCAGAACAGTAATGTGTCCCGTGTAGAGGTTGGACCAAAGACCTACATCCGGCAGGACAATGAGAGGGTACTGTTTGCCCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| 3UTR-3UTR GCA 90 bp | TGTAGGTCTTTGGTCCAACCTCTACACGGGACACATTACTGTTCTGGTCCAGCAGATGGCCTCTTCAGTTaGCATGGTGAATCCCAAGCC | + |
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Preference number: 2 (lower is better) Translates to: CRSLVQPLHGTHYCSGPADGLFS*HGESQA Trigger: GGCTTGGGATTCACCATGGCAACTGAAGAGGCCATC...TGCTGGACCAGAACAGTAATGTGTCCCGTGTAGAGGTTGGACCAAAGACCTACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| 3UTR CCA 72 bp | TACAGAGGGAAGGGGTCCTGGGCTAGTCGGATCTCCTaGTCAGCGTGCCGGAGCCGGACTTGTCCTGTGACG | + |
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Preference number: 3 (lower is better) Translates to: YRGKGSWASRIS*SACRSRTCPVT Trigger: CGTCACAGGACAAGTCCGGCTCCGGCACGCTGACCAGGAGATCCGACTAGCCCAGGACCCCTTCCCTCTGTA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| 3UTR GCA 72 bp | AACTCTGGGCGTCCCGGGACACAGGGTTGGCCACTATaGAGTAGTGGCGTGGTGGGACCGTCACCATGCGAA | + |
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Preference number: 3 (lower is better) Translates to: NSGRPGTQGWPL*SSGVVGPSPCE Trigger: TTCGCATGGTGACGGTCCCACCACGCCACTACTGCATAGTGGCCAACCCTGTGTCCCGGGACGCCCAGAGTT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| 3UTR CCA 72 bp | CCGGGACACAGGGTTGGCCACTATGCAGTAGTGGCGTaGTGGGACCGTCACCATGCGAACTGGGGCAAACAG | + |
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Preference number: 3 (lower is better) Translates to: PGHRVGHYAVVA*WDRHHANWGKQ Trigger: CTGTTTGCCCCAGTTCGCATGGTGACGGTCCCACCACGCCACTACTGCATAGTGGCCAACCCTGTGTCCCGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| 3UTR GCA 72 bp | AAGGGGTCCTGGGCTAGTCGGATCTCCTGGTCAGCGTaGCGGAGCCGGACTTGTCCTGTGACGTCAAACAAC | + |
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Preference number: 3 (lower is better) Translates to: KGSWASRISWSA*RSRTCPVTSNN Trigger: GTTGTTTGACGTCACAGGACAAGTCCGGCTCCGGCACGCTGACCAGGAGATCCGACTAGCCCAGGACCCCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| 3UTR CCA 72 bp | ACAACACAGAACTCTGGGCGTCCCGGGACACAGGGTTaGCCACTATGCAGTAGTGGCGTGGTGGGACCGTCA | + |
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Preference number: 3 (lower is better) Translates to: TTQNSGRPGTQG*PLCSSGVVGPS Trigger: TGACGGTCCCACCACGCCACTACTGCATAGTGGCCAACCCTGTGTCCCGGGACGCCCAGAGTTCTGTGTTGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| 3UTR-3UTR CAA 90 bp | CACAGGGTTGGCCACTATGCAGTAGTGGCGTGGTGGGACCGTCACCATGCGAACGCCGGATGTAGGTCTTaGGTCCAACCTCTACACGGG | + |
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Preference number: 3 (lower is better) Translates to: HRVGHYAVVAWWDRHHANAGCRS*VQPLHG Trigger: CCCGTGTAGAGGTTGGACCAAAGACCTACATCCGGC...GTTCGCATGGTGACGGTCCCACCACGCCACTACTGCATAGTGGCCAACCCTGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| 3UTR CCA 72 bp | GCAGTAGTGGCGTGGTGGGACCGTCACCATGCGAACTaGGGCAAACAGTACCCTCTCATTGTCCTGCCGGAT | + |
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Preference number: 3 (lower is better) Translates to: AVVAWWDRHHAN*GKQYPLIVLPD Trigger: ATCCGGCAGGACAATGAGAGGGTACTGTTTGCCCCAGTTCGCATGGTGACGGTCCCACCACGCCACTACTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| 3UTR CCA 72 bp | GGACACAGGGTTGGCCACTATGCAGTAGTGGCGTGGTaGGACCGTCACCATGCGAACTGGGGCAAACAGTAC | + |
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Preference number: 3 (lower is better) Translates to: GHRVGHYAVVAW*DRHHANWGKQY Trigger: GTACTGTTTGCCCCAGTTCGCATGGTGACGGTCCCACCACGCCACTACTGCATAGTGGCCAACCCTGTGTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| 3UTR CCA 72 bp | CGGACTTGTCCTGTGACGTCAAACAACACAGAACTCTaGGCGTCCCGGGACACAGGGTTGGCCACTATGCAG | + |
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Preference number: 3 (lower is better) Translates to: RTCPVTSNNTEL*ASRDTGLATMQ Trigger: CTGCATAGTGGCCAACCCTGTGTCCCGGGACGCCCAGAGTTCTGTGTTGTTTGACGTCACAGGACAAGTCCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| 3UTR GCA 72 bp | CCACTATGCAGTAGTGGCGTGGTGGGACCGTCACCATaGGAACTGGGGCAAACAGTACCCTCTCATTGTCCT | + |
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Preference number: 3 (lower is better) Translates to: PLCSSGVVGPSP*ELGQTVPSHCP Trigger: AGGACAATGAGAGGGTACTGTTTGCCCCAGTTCGCATGGTGACGGTCCCACCACGCCACTACTGCATAGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| 3UTR CCA 72 bp | CAGTACCCTCTCATTGTCCTGCCGGATGTAGGTCTTTaGTCCAACCTCTACACGGGACACATTACTGTTCTG | + |
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Preference number: 3 (lower is better) Translates to: QYPLIVLPDVGL*SNLYTGHITVL Trigger: CAGAACAGTAATGTGTCCCGTGTAGAGGTTGGACCAAAGACCTACATCCGGCAGGACAATGAGAGGGTACTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| CDS-3UTR CCA 90 bp | CACAGGGTTGGCCACTATGCAGTAGTGGCGTGGTGGGACCGTCACCATGCGAACCGCGCCTCCCGTTTCTaGCTCCGGGCTGAGCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: HRVGHYAVVAWWDRHHANRASRF*LRAELP Trigger: AGGAAGCTCAGCCCGGAGCCAGAAACGGGAGGCGCG...GTTCGCATGGTGACGGTCCCACCACGCCACTACTGCATAGTGGCCAACCCTGTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| CDS-3UTR CCA 90 bp | ACACAGGGTTGGCCACTATGCAGTAGTGGCGTGGTGGGACCGTCACCATGCGAAGGAGTGGAGGGCTGGTaGGGCTGGGGCCCTCTGAGT | + |
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Preference number: 4 (lower is better) Translates to: TQGWPLCSSGVVGPSPCEGVEGW*GWGPLS Trigger: ACTCAGAGGGCCCCAGCCCCACCAGCCCTCCACTCC...TTCGCATGGTGACGGTCCCACCACGCCACTACTGCATAGTGGCCAACCCTGTGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| CDS-3UTR CCA 90 bp | ACTTGTCCTGTGACGTCAAACAACACAGAACTCTGGGCGTCCCGGGACACAGGGATCGGAGTGGAGGGCTaGTGGGGCTGGGGCCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: TCPVTSNNTELWASRDTGIGVEG*WGWGPL Trigger: CAGAGGGCCCCAGCCCCACCAGCCCTCCACTCCGAT...CCCTGTGTCCCGGGACGCCCAGAGTTCTGTGTTGTTTGACGTCACAGGACAAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| CDS-3UTR CCA 90 bp | CTATGCAGTAGTGGCGTGGTGGGACCGTCACCATGCGAACTGGGGCAAACAGTAGAGGGCTGGTGGGGCTaGGGCCCTCTGAGTCTAAGC | + |
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Preference number: 4 (lower is better) Translates to: LCSSGVVGPSPCELGQTVEGWWG*GPLSLS Trigger: GCTTAGACTCAGAGGGCCCCAGCCCCACCAGCCCTC...TACTGTTTGCCCCAGTTCGCATGGTGACGGTCCCACCACGCCACTACTGCATAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| CDS-3UTR GCA 90 bp | GGGCGTCCCGGGACACAGGGTTGGCCACTATGCAGTAGTGGCGTGGTGGGACCGAATTCTGTAGGCATGTaGGGCTTTTCCTCCTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: GRPGTQGWPLCSSGVVGPNSVGM*GFSSSS Trigger: AGAGGAGGAGGAAAAGCCGCACATGCCTACAGAATT...CGGTCCCACCACGCCACTACTGCATAGTGGCCAACCCTGTGTCCCGGGACGCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| CDS-3UTR TCA 90 bp | ACTTGTCCTGTGACGTCAAACAACACAGAACTCTGGGCGTCCCGGGACACAGGGTTTCTGGCTCCGGGCTaGGCTTCCTGGTGTCCGTCT | + |
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Preference number: 4 (lower is better) Translates to: TCPVTSNNTELWASRDTGFLAPG*ASWCPS Trigger: AGACGGACACCAGGAAGCTCAGCCCGGAGCCAGAAA...CCCTGTGTCCCGGGACGCCCAGAGTTCTGTGTTGTTTGACGTCACAGGACAAGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| CDS-3UTR CCA 90 bp | AGCCGGACTTGTCCTGTGACGTCAAACAACACAGAACTCTGGGCGTCCCGGGACCCTCCTCCTCTTCTTTaGCCTCTGGCTCCTCGTCTG | + |
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Preference number: 4 (lower is better) Translates to: SRTCPVTSNNTELWASRDPPPLL*PLAPRL Trigger: CAGACGAGGAGCCAGAGGCCAAAGAAGAGGAGGAGG...GTCCCGGGACGCCCAGAGTTCTGTGTTGTTTGACGTCACAGGACAAGTCCGGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| CDS-3UTR GCA 90 bp | AACTCTGGGCGTCCCGGGACACAGGGTTGGCCACTATGCAGTAGTGGCGTGGTGCCGGTCCGGAGGATTTaGTCCTCTAGTTTCTTATGG | + |
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Preference number: 4 (lower is better) Translates to: NSGRPGTQGWPLCSSGVVPVRRI*SSSFLW Trigger: CCATAAGAAACTAGAGGAGCAAATCCTCCGGACCGG...CACCACGCCACTACTGCATAGTGGCCAACCCTGTGTCCCGGGACGCCCAGAGTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| CDS-3UTR TCA 90 bp | CGTCACCATGCGAACTGGGGCAAACAGTACCCTCTCATTGTCCTGCCGGATGTACCTCTGAGTCTAAGCTaGAGAGGTCTCTCCCGGTCC | + |
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Preference number: 4 (lower is better) Translates to: RHHANWGKQYPLIVLPDVPLSLS*RGLSRS Trigger: GGACCGGGAGAGACCTCTTCAGCTTAGACTCAGAGG...TACATCCGGCAGGACAATGAGAGGGTACTGTTTGCCCCAGTTCGCATGGTGACG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| CDS-3UTR CCA 90 bp | GTGGGACCGTCACCATGCGAACTGGGGCAAACAGTACCCTCTCATTGTCCTGCCTCCTCTAGTTTCTTATaGCGCTTCATGTCTGAGAGG | + |
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Preference number: 4 (lower is better) Translates to: VGPSPCELGQTVPSHCPASSSFL*RFMSER Trigger: CCTCTCAGACATGAAGCGCCATAAGAAACTAGAGGA...GGCAGGACAATGAGAGGGTACTGTTTGCCCCAGTTCGCATGGTGACGGTCCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| CDS-3UTR CCA 90 bp | GACTTGTCCTGTGACGTCAAACAACACAGAACTCTGGGCGTCCCGGGACACAGGAGTACTTCCGCTGTCTaGGAAAGAGACTGTTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: DLSCDVKQHRTLGVPGHRSTSAV*ERDCFL Trigger: CAGGAAACAGTCTCTTTCCCAGACAGCGGAAGTACT...CCTGTGTCCCGGGACGCCCAGAGTTCTGTGTTGTTTGACGTCACAGGACAAGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| CDS-3UTR CCA 90 bp | CACAGGGTTGGCCACTATGCAGTAGTGGCGTGGTGGGACCGTCACCATGCGAACGTCCTTTGGTGTCATTaGCTCATCATCAAAGTCAAA | + |
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Preference number: 4 (lower is better) Translates to: HRVGHYAVVAWWDRHHANVLWCH*LIIKVK Trigger: TTTGACTTTGATGATGAGCCAATGACACCAAAGGAC...GTTCGCATGGTGACGGTCCCACCACGCCACTACTGCATAGTGGCCAACCCTGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| 3UTR CAA 72 bp | ACAGTACCCTCTCATTGTCCTGCCGGATGTAGGTCTTaGGTCCAACCTCTACACGGGACACATTACTGTTCT | + |
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Preference number: 4 (lower is better) Translates to: TVPSHCPAGCRS*VQPLHGTHYCS Trigger: AGAACAGTAATGTGTCCCGTGTAGAGGTTGGACCAAAGACCTACATCCGGCAGGACAATGAGAGGGTACTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| CDS-3UTR TCA 90 bp | CTCTACACGGGACACATTACTGTTCTGGTCCAGCACATGGATGTAGTGGTATGGTCTCCTGTCAATCAGTaGGTCCTTTGGTGTCATTGG | + |
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Preference number: 4 (lower is better) Translates to: LYTGHITVLVQHMDVVVWSPVNQ*VLWCHW Trigger: CCAATGACACCAAAGGACTCACTGATTGACAGGAGA...CCATACCACTACATCCATGTGCTGGACCAGAACAGTAATGTGTCCCGTGTAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| CDS TCA 90 bp | ATCGGAGTGGAGGGCTGGTGGGGCTGGGGCCCTCTGAGTCTAAGCTaGAGAGGTCTCTCCCGGTCCGGAGGATTTGCTCCTCTAGTTTCT | + |
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Preference number: 5 (lower is better) Translates to: IGVEGWWGWGPLSLS*RGLSRSGGFAPLVS Trigger: AGAAACTAGAGGAGCAAATCCTCCGGACCGGGAGAGACCTCTTCAGCTTAGACTCAGAGGGCCCCAGCCCCACCAGCCCTCCACTCCGAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| CDS-3UTR CAA 90 bp | AACTCTGGGCGTCCCGGGACACAGGGTTGGCCACTATGCAGTAGTGGCGTGGTGCAATCAGTGAGTCCTTaGGTGTCATTGGCTCATCAT | + |
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Preference number: 5 (lower is better) Translates to: NSGRPGTQGWPLCSSGVVQSVSP*VSLAHH Trigger: ATGATGAGCCAATGACACCAAAGGACTCACTGATTG...CACCACGCCACTACTGCATAGTGGCCAACCCTGTGTCCCGGGACGCCCAGAGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| CDS-3UTR CAA 90 bp | TGTAGGTCTTTGGTCCAACCTCTACACGGGACACATTACTGTTCTGGTCCAGCAAGTCCTTTGGTGTCATaGGCTCATCATCAAAGTCAA | + |
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Preference number: 5 (lower is better) Translates to: CRSLVQPLHGTHYCSGPASPLVS*AHHQSQ Trigger: TTGACTTTGATGATGAGCCAATGACACCAAAGGACT...TGCTGGACCAGAACAGTAATGTGTCCCGTGTAGAGGTTGGACCAAAGACCTACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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| CDS TCA 72 bp | GAGGGCTGGTGGGGCTGGGGCCCTCTGAGTCTAAGCTaGAGAGGTCTCTCCCGGTCCGGAGGATTTGCTCCT | + |
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Preference number: 6 (lower is better) Translates to: EGWWGWGPLSLS*RGLSRSGGFAP Trigger: AGGAGCAAATCCTCCGGACCGGGAGAGACCTCTTCAGCTTAGACTCAGAGGGCCCCAGCCCCACCAGCCCTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172958.7 |
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