Pregenerated sensors for PAGR1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030680Ensembl transcript IDs: ENSMUST00000162069.3, ENSMUST00000200948.2, ENSMUST00000206416.2
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACAGAACACACAGGCACTCTCCTGAGAGGCACTGCGCTGGGAGCCTaGGGCCTTCCCCATTACAAGTTCCCCAGAGCCTGGGTTGGGAAA | + |
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Preference number: 1 (lower is better) Translates to: TEHTGTLLRGTALGA*GLPHYKFPRAWVGK Trigger: TTTCCCAACCCAGGCTCTGGGGAACTTGTAATGGGGAAGGCCTCAGGCTCCCAGCGCAGTGCCTCTCAGGAGAGTGCCTGTGTGTTCTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200948.2 |
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| 3UTR CCA 90 bp | CGCTTCATGTCTGAGAGGACCTTATCCAGACGCGCCTCCCGTTTCTaGCTCCGGGCTGAGCTTCCTGGTGTCCGTCTCCTGTCAATCAGT | + |
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Preference number: 1 (lower is better) Translates to: RFMSERTLSRRASRF*LRAELPGVRLLSIS Trigger: ACTGATTGACAGGAGACGGACACCAGGAAGCTCAGCCCGGAGCCAGAAACGGGAGGCGCGTCTGGATAAGGTCCTCTCAGACATGAAGCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206416.2 |
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| 3UTR-3UTR TCA 90 bp | ATCGGGCATCTTTTATTAGATTTAGCACATCCAGCTCAAAACTGCGAACAGACAACTGCGCTGGGAGCCTaGGGCCTTCCCCATTACAAG | + |
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Preference number: 2 (lower is better) Translates to: IGHLLLDLAHPAQNCEQTTALGA*GLPHYK Trigger: CTTGTAATGGGGAAGGCCTCAGGCTCCCAGCGCAGT...TGTCTGTTCGCAGTTTTGAGCTGGATGTGCTAAATCTAATAAAAGATGCCCGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000200948.2 |
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| 3UTR-3UTR GCA 90 bp | TTAGATTTAGCACATCCAGCTCAAAACTGCGAACAGACACTAAACAGAACACACCAGCACAAAACAGTCTaGACCTGTAGGCAGGAGCAG | + |
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Preference number: 2 (lower is better) Translates to: LDLAHPAQNCEQTLNRTHQHKTV*TCRQEQ Trigger: CTGCTCCTGCCTACAGGTGCAGACTGTTTTGTGCTG...GTGTGTTCTGTTTAGTGTCTGTTCGCAGTTTTGAGCTGGATGTGCTAAATCTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200948.2 |
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| 3UTR TCA 72 bp | ACAGGCACTCTCCTGAGAGGCACTGCGCTGGGAGCCTaGGGCCTTCCCCATTACAAGTTCCCCAGAGCCTGG | + |
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Preference number: 3 (lower is better) Translates to: TGTLLRGTALGA*GLPHYKFPRAW Trigger: CCAGGCTCTGGGGAACTTGTAATGGGGAAGGCCTCAGGCTCCCAGCGCAGTGCCTCTCAGGAGAGTGCCTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200948.2 |
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| 3UTR CCA 72 bp | TCTGAGAGGACCTTATCCAGACGCGCCTCCCGTTTCTaGCTCCGGGCTGAGCTTCCTGGTGTCCGTCTCCTG | + |
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Preference number: 3 (lower is better) Translates to: SERTLSRRASRF*LRAELPGVRLL Trigger: CAGGAGACGGACACCAGGAAGCTCAGCCCGGAGCCAGAAACGGGAGGCGCGTCTGGATAAGGTCCTCTCAGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206416.2 |
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| 3UTR GCA 72 bp | CTAAACAGAACACACAGGCACTCTCCTGAGAGGCACTaGGCTGGGAGCCTGAGGCCTTCCCCATTACAAGTT | + |
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Preference number: 3 (lower is better) Translates to: LNRTHRHSPERH*AGSLRPSPLQV Trigger: AACTTGTAATGGGGAAGGCCTCAGGCTCCCAGCGCAGTGCCTCTCAGGAGAGTGCCTGTGTGTTCTGTTTAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200948.2 |
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| 3UTR-3UTR CAA 90 bp | ATCGGGCATCTTTTATTAGATTTAGCACATCCAGCTCAAAACTGCGAACAGACATCCCCAGAGCCTGGGTaGGGAAAGGCTGGCCATGCC | + |
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Preference number: 3 (lower is better) Translates to: IGHLLLDLAHPAQNCEQTSPEPG*GKAGHA Trigger: GGCATGGCCAGCCTTTCCCAACCCAGGCTCTGGGGA...TGTCTGTTCGCAGTTTTGAGCTGGATGTGCTAAATCTAATAAAAGATGCCCGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000200948.2 |
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| CDS-3UTR GCA 90 bp | GACGCGCCTCCCGTTTCTGGCTCCGGGCTGAGCTTCCTGGTGTCCGTCTCCTGTGAGGCGCTGCTGTGCTaGCTGCAATGGTTCCATGGC | + |
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Preference number: 4 (lower is better) Translates to: DAPPVSGSGLSFLVSVSCEALLC*LQWFHG Trigger: GCCATGGAACCATTGCAGGCAGCACAGCAGCGCCTC...ACAGGAGACGGACACCAGGAAGCTCAGCCCGGAGCCAGAAACGGGAGGCGCGTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206416.2 |
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| CDS-3UTR GCA 90 bp | GACGCGCCTCCCGTTTCTGGCTCCGGGCTGAGCTTCCTGGTGTCCGTCTCCTGTCCACCTCCTCATCGCTaGAGGGCACGCACCAGTCTT | + |
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Preference number: 4 (lower is better) Translates to: DAPPVSGSGLSFLVSVSCPPPHR*RARTSL Trigger: AAGACTGGTGCGTGCCCTGCAGCGATGAGGAGGTGG...ACAGGAGACGGACACCAGGAAGCTCAGCCCGGAGCCAGAAACGGGAGGCGCGTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206416.2 |
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| CDS-3UTR CCA 90 bp | CGCTGGGAGCCTGAGGCCTTCCCCATTACAAGTTCCCCAGAGCCTGGGTTGGGACTGGATCTCGGAGGGTaGGGGCATCCAGGACTGCCC | + |
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Preference number: 4 (lower is better) Translates to: RWEPEAFPITSSPEPGLGLDLGG*GHPGLP Trigger: GGGCAGTCCTGGATGCCCCCACCCTCCGAGATCCAG...TCCCAACCCAGGCTCTGGGGAACTTGTAATGGGGAAGGCCTCAGGCTCCCAGCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000200948.2 |
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| CDS-3UTR TCA 90 bp | GGGTTGGGAAAGGCTGGCCATGCCCAGCACAAAACAGTCTGCACCTGTAGGCAGCGCCCGGCCTCCTCCTaGCTGCCTTTCCCCTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: GLGKAGHAQHKTVCTCRQRPASS*LPFPSS Trigger: GGAAGAGGGGAAAGGCAGTCAGGAGGAGGCCGGGCG...CTGCCTACAGGTGCAGACTGTTTTGTGCTGGGCATGGCCAGCCTTTCCCAACCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200948.2 |
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| CDS-3UTR TCA 90 bp | TCTGGCTCCGGGCTGAGCTTCCTGGTGTCCGTCTCCTGTCAATCAGTGAGTCCTCGCCCGGCCTCCTCCTaGCTGCCTTTCCCCTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: SGSGLSFLVSVSCQSVSPRPASS*LPFPSS Trigger: GGAAGAGGGGAAAGGCAGTCAGGAGGAGGCCGGGCG...AGGACTCACTGATTGACAGGAGACGGACACCAGGAAGCTCAGCCCGGAGCCAGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206416.2 |
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| CDS-3UTR GCA 90 bp | GGGTTGGGAAAGGCTGGCCATGCCCAGCACAAAACAGTCTGCACCTGTAGGCAGGGGGGCATCCAGGACTaGCCATTGGCCGGCAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: GLGKAGHAQHKTVCTCRQGGIQD*PLAGSS Trigger: GGAGCTGCCGGCCAATGGGCAGTCCTGGATGCCCCC...CTGCCTACAGGTGCAGACTGTTTTGTGCTGGGCATGGCCAGCCTTTCCCAACCC 63% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000200948.2 |
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| CDS-3UTR CCA 90 bp | CGCTGGGAGCCTGAGGCCTTCCCCATTACAAGTTCCCCAGAGCCTGGGTTGGGATCCAGGACTGCCCATTaGCCGGCAGCTCCACCTCCT | + |
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Preference number: 4 (lower is better) Translates to: RWEPEAFPITSSPEPGLGSRTAH*PAAPPP Trigger: AGGAGGTGGAGCTGCCGGCCAATGGGCAGTCCTGGA...TCCCAACCCAGGCTCTGGGGAACTTGTAATGGGGAAGGCCTCAGGCTCCCAGCG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200948.2 |
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| CDS-3UTR CCA 90 bp | GCTTCATGTCTGAGAGGACCTTATCCAGACGCGCCTCCCGTTTCTGGCTCCGGGCTGGATCTCGGAGGGTaGGGGCATCCAGGACTGCCC | + |
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Preference number: 4 (lower is better) Translates to: ASCLRGPYPDAPPVSGSGLDLGG*GHPGLP Trigger: GGGCAGTCCTGGATGCCCCCACCCTCCGAGATCCAG...CCCGGAGCCAGAAACGGGAGGCGCGTCTGGATAAGGTCCTCTCAGACATGAAGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206416.2 |
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| CDS-3UTR CCA 90 bp | TCTGGCTCCGGGCTGAGCTTCCTGGTGTCCGTCTCCTGTCAATCAGTGAGTCCTTCCAGGACTGCCCATTaGCCGGCAGCTCCACCTCCT | + |
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Preference number: 4 (lower is better) Translates to: SGSGLSFLVSVSCQSVSPSRTAH*PAAPPP Trigger: AGGAGGTGGAGCTGCCGGCCAATGGGCAGTCCTGGA...AGGACTCACTGATTGACAGGAGACGGACACCAGGAAGCTCAGCCCGGAGCCAGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206416.2 |
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| CDS-3UTR GCA 90 bp | TTCCCCATTACAAGTTCCCCAGAGCCTGGGTTGGGAAAGGCTGGCCATGCCCAGGAGGCGCTGCTGTGCTaGCTGCAATGGTTCCATGGC | + |
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Preference number: 4 (lower is better) Translates to: FPITSSPEPGLGKAGHAQEALLC*LQWFHG Trigger: GCCATGGAACCATTGCAGGCAGCACAGCAGCGCCTC...CTGGGCATGGCCAGCCTTTCCCAACCCAGGCTCTGGGGAACTTGTAATGGGGAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200948.2 |
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| CDS-3UTR TCA 90 bp | AGAACACACAGGCACTCTCCTGAGAGGCACTGCGCTGGGAGCCTGAGGCCTTCCGGTAGGATCTCTGCTTaGAGCTCCAGAGTACCTTGG | + |
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Preference number: 4 (lower is better) Translates to: RTHRHSPERHCAGSLRPSGRISA*SSRVPW Trigger: CCAAGGTACTCTGGAGCTTCAAGCAGAGATCCTACC...GGAAGGCCTCAGGCTCCCAGCGCAGTGCCTCTCAGGAGAGTGCCTGTGTGTTCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200948.2 |
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| CDS-3UTR GCA 90 bp | TTACAAGTTCCCCAGAGCCTGGGTTGGGAAAGGCTGGCCATGCCCAGCACAAAACCACCTCCTCATCGCTaGAGGGCACGCACCAGTCTT | + |
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Preference number: 4 (lower is better) Translates to: LQVPQSLGWERLAMPSTKPPPHR*RARTSL Trigger: AAGACTGGTGCGTGCCCTGCAGCGATGAGGAGGTGG...TTTTGTGCTGGGCATGGCCAGCCTTTCCCAACCCAGGCTCTGGGGAACTTGTAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200948.2 |
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| CDS CCA 90 bp | AGAGCCGCTGGATCTCGGAGGGTGGGGGCATCCAGGACTGCCCATTaGCCGGCAGCTCCACCTCCTCATCGCTGCAGGGCACGCACCAGT | + |
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Preference number: 5 (lower is better) Translates to: RAAGSRRVGASRTAH*PAAPPPHRCRARTS Trigger: ACTGGTGCGTGCCCTGCAGCGATGAGGAGGTGGAGCTGCCGGCCAATGGGCAGTCCTGGATGCCCCCACCCTCCGAGATCCAGCGGCTCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000200948.2 ENSMUST00000206416.2 |
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| CDS CCA 90 bp | GCCTTGGGTAGCCAGCAGTTCATAGAGCCGCTGGATCTCGGAGGGTaGGGGCATCCAGGACTGCCCATTGGCCGGCAGCTCCACCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: ALGSQQFIEPLDLGG*GHPGLPIGRQLHLL Trigger: GAGGAGGTGGAGCTGCCGGCCAATGGGCAGTCCTGGATGCCCCCACCCTCCGAGATCCAGCGGCTCTATGAACTGCTGGCTACCCAAGGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206416.2 |
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| CDS CCA 90 bp | ACCTTGGGTAGCCAGCAGTTCATAGAGCCGCTGGATCTCGGAGGGTaGGGGCATCCAGGACTGCCCATTGGCCGGCAGCTCCACCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: TLGSQQFIEPLDLGG*GHPGLPIGRQLHLL Trigger: GAGGAGGTGGAGCTGCCGGCCAATGGGCAGTCCTGGATGCCCCCACCCTCCGAGATCCAGCGGCTCTATGAACTGCTGGCTACCCAAGGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200948.2 |
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| CDS-3UTR CAA 90 bp | GAGAGGACCTTATCCAGACGCGCCTCCCGTTTCTGGCTCCGGGCTGAGCTTCCTCTCCACCGCCAGAGCTaGGAGGCCGGAAGTCACTTC | + |
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Preference number: 5 (lower is better) Translates to: ERTLSRRASRFWLRAELPLHRQS*EAGSHF Trigger: GAAGTGACTTCCGGCCTCCAAGCTCTGGCGGTGGAG...AGGAAGCTCAGCCCGGAGCCAGAAACGGGAGGCGCGTCTGGATAAGGTCCTCTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206416.2 |
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| CDS-3UTR CAA 90 bp | ATGTCTGAGAGGACCTTATCCAGACGCGCCTCCCGTTTCTGGCTCCGGGCTGAGATCCAGGACTGCCCATaGGCCGGCAGCTCCACCTCC | + |
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Preference number: 5 (lower is better) Translates to: MSERTLSRRASRFWLRAEIQDCP*AGSSTS Trigger: GGAGGTGGAGCTGCCGGCCAATGGGCAGTCCTGGAT...CTCAGCCCGGAGCCAGAAACGGGAGGCGCGTCTGGATAAGGTCCTCTCAGACAT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206416.2 |
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| CDS CCA 90 bp | CTAGCCGAGACAGAGGGACCTCCAGTGTCCTCCACCGCCAGAGCTTaGAGGCCGGAAGTCACTTCCCCTTCTTCAGACAGAGGCGCTGCT | + |
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Preference number: 5 (lower is better) Translates to: LAETEGPPVSSTARA*RPEVTSPSSDRGAA Trigger: AGCAGCGCCTCTGTCTGAAGAAGGGGAAGTGACTTCCGGCCTCCAAGCTCTGGCGGTGGAGGACACTGGAGGTCCCTCTGTCTCGGCTAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000200948.2 ENSMUST00000206416.2 |
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| CDS-3UTR CAA 90 bp | GGCCTTCCCCATTACAAGTTCCCCAGAGCCTGGGTTGGGAAAGGCTGGCCATGCCTCCACCGCCAGAGCTaGGAGGCCGGAAGTCACTTC | + |
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Preference number: 5 (lower is better) Translates to: GLPHYKFPRAWVGKGWPCLHRQS*EAGSHF Trigger: GAAGTGACTTCCGGCCTCCAAGCTCTGGCGGTGGAG...GCATGGCCAGCCTTTCCCAACCCAGGCTCTGGGGAACTTGTAATGGGGAAGGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200948.2 |
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| CDS-3UTR CAA 90 bp | TTCCCCATTACAAGTTCCCCAGAGCCTGGGTTGGGAAAGGCTGGCCATGCCCAGATCCAGGACTGCCCATaGGCCGGCAGCTCCACCTCC | + |
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Preference number: 5 (lower is better) Translates to: FPITSSPEPGLGKAGHAQIQDCP*AGSSTS Trigger: GGAGGTGGAGCTGCCGGCCAATGGGCAGTCCTGGAT...CTGGGCATGGCCAGCCTTTCCCAACCCAGGCTCTGGGGAACTTGTAATGGGGAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200948.2 |
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| CDS-3UTR CAA 90 bp | GTTCCCCAGAGCCTGGGTTGGGAAAGGCTGGCCATGCCCAGCACAAAACAGTCTAAGCTCCAGAGTACCTaGGGTAGCCAGCAGTTCATA | + |
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Preference number: 5 (lower is better) Translates to: VPQSLGWERLAMPSTKQSKLQST*GSQQFI Trigger: TATGAACTGCTGGCTACCCAAGGTACTCTGGAGCTT...AGACTGTTTTGTGCTGGGCATGGCCAGCCTTTCCCAACCCAGGCTCTGGGGAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200948.2 |
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| CDS GCA 90 bp | CCCTCTGAGTCTAAGCTGAAGAGGTCTCTCCCGGTCCGGAGGATTTaGTCCTCTAGTTTCTTATGGCGCTTCATGTCTGAGAGGACCTTA | + |
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Preference number: 5 (lower is better) Translates to: PSESKLKRSLPVRRI*SSSFLWRFMSERTL Trigger: TAAGGTCCTCTCAGACATGAAGCGCCATAAGAAACTAGAGGAGCAAATCCTCCGGACCGGGAGAGACCTCTTCAGCTTAGACTCAGAGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000162069.3 ENSMUST00000200948.2 |
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| CDS GCA 90 bp | TTTGGTGTCATTGGCTCATCATCAAAGTCAAATTCTGTAGGCATGTaGGGCTTTTCCTCCTCCTCTTCTTTGGCCTCTGGCTCCTCGTCT | + |
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Preference number: 5 (lower is better) Translates to: FGVIGSSSKSNSVGM*GFSSSSSLASGSSS Trigger: AGACGAGGAGCCAGAGGCCAAAGAAGAGGAGGAGGAAAAGCCGCACATGCCTACAGAATTTGACTTTGATGATGAGCCAATGACACCAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200948.2 |
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| CDS GCA 72 bp | AGCCGCTGGATCTCGGAGGGTGGGGGCATCCAGGACTaGCCATTGGCCGGCAGCTCCACCTCCTCATCGCTG | + |
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Preference number: 6 (lower is better) Translates to: SRWISEGGGIQD*PLAGSSTSSSL Trigger: CAGCGATGAGGAGGTGGAGCTGCCGGCCAATGGGCAGTCCTGGATGCCCCCACCCTCCGAGATCCAGCGGCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000200948.2 ENSMUST00000206416.2 |
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| CDS CCA 72 bp | GGATCTCGGAGGGTGGGGGCATCCAGGACTGCCCATTaGCCGGCAGCTCCACCTCCTCATCGCTGCAGGGCA | + |
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Preference number: 6 (lower is better) Translates to: GSRRVGASRTAH*PAAPPPHRCRA Trigger: TGCCCTGCAGCGATGAGGAGGTGGAGCTGCCGGCCAATGGGCAGTCCTGGATGCCCCCACCCTCCGAGATCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000200948.2 ENSMUST00000206416.2 |
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| CDS CAA 72 bp | TGGATCTCGGAGGGTGGGGGCATCCAGGACTGCCCATaGGCCGGCAGCTCCACCTCCTCATCGCTGCAGGGC | + |
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Preference number: 6 (lower is better) Translates to: WISEGGGIQDCP*AGSSTSSSLQG Trigger: GCCCTGCAGCGATGAGGAGGTGGAGCTGCCGGCCAATGGGCAGTCCTGGATGCCCCCACCCTCCGAGATCCA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000200948.2 ENSMUST00000206416.2 |
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| CDS CCA 72 bp | AGCCAGCAGTTCATAGAGCCGCTGGATCTCGGAGGGTaGGGGCATCCAGGACTGCCCATTGGCCGGCAGCTC | + |
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Preference number: 6 (lower is better) Translates to: SQQFIEPLDLGG*GHPGLPIGRQL Trigger: GAGCTGCCGGCCAATGGGCAGTCCTGGATGCCCCCACCCTCCGAGATCCAGCGGCTCTATGAACTGCTGGCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000200948.2 ENSMUST00000206416.2 |
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| CDS CAA 90 bp | ACTAGCCGAGACAGAGGGACCTCCAGTGTCCTCCACCGCCAGAGCTaGGAGGCCGGAAGTCACTTCCCCTTCTTCAGACAGAGGCGCTGC | + |
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Preference number: 6 (lower is better) Translates to: TSRDRGTSSVLHRQS*EAGSHFPFFRQRRC Trigger: GCAGCGCCTCTGTCTGAAGAAGGGGAAGTGACTTCCGGCCTCCAAGCTCTGGCGGTGGAGGACACTGGAGGTCCCTCTGTCTCGGCTAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000200948.2 ENSMUST00000206416.2 |
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| CDS GCA 72 bp | GCCGGAAGTCACTTCCCCTTCTTCAGACAGAGGCGCTaGTGTGCTGCCTGCAATGGTTCCATGGCCCAGGGC | + |
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Preference number: 6 (lower is better) Translates to: AGSHFPFFRQRR*CAACNGSMAQG Trigger: GCCCTGGGCCATGGAACCATTGCAGGCAGCACAGCAGCGCCTCTGTCTGAAGAAGGGGAAGTGACTTCCGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000200948.2 ENSMUST00000206416.2 |
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| CDS TCA 72 bp | TCTGGGGTAGGCGGCCGGCGGGGTAGGATCTCTGCTTaGAGCTCCAGAGTACCTTGGGTAGCCAGCAGTTCA | + |
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Preference number: 6 (lower is better) Translates to: SGVGGRRGRISA*SSRVPWVASSS Trigger: TGAACTGCTGGCTACCCAAGGTACTCTGGAGCTTCAAGCAGAGATCCTACCCCGCCGGCCGCCTACCCCAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200948.2 |
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| CDS CAA 72 bp | GACAGAGGGACCTCCAGTGTCCTCCACCGCCAGAGCTaGGAGGCCGGAAGTCACTTCCCCTTCTTCAGACAG | + |
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Preference number: 6 (lower is better) Translates to: DRGTSSVLHRQS*EAGSHFPFFRQ Trigger: CTGTCTGAAGAAGGGGAAGTGACTTCCGGCCTCCAAGCTCTGGCGGTGGAGGACACTGGAGGTCCCTCTGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000200948.2 ENSMUST00000206416.2 |
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| CDS GCA 72 bp | AAGTCACTTCCCCTTCTTCAGACAGAGGCGCTGCTGTaGTGCCTGCAATGGTTCCATGGCCCAGGGCAAGGG | + |
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Preference number: 6 (lower is better) Translates to: KSLPLLQTEALL*CLQWFHGPGQG Trigger: CCCTTGCCCTGGGCCATGGAACCATTGCAGGCAGCACAGCAGCGCCTCTGTCTGAAGAAGGGGAAGTGACTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000200948.2 ENSMUST00000206416.2 |
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| CDS CCA 72 bp | ACAGAGGGACCTCCAGTGTCCTCCACCGCCAGAGCTTaGAGGCCGGAAGTCACTTCCCCTTCTTCAGACAGA | + |
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Preference number: 6 (lower is better) Translates to: TEGPPVSSTARA*RPEVTSPSSDR Trigger: TCTGTCTGAAGAAGGGGAAGTGACTTCCGGCCTCCAAGCTCTGGCGGTGGAGGACACTGGAGGTCCCTCTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000200948.2 ENSMUST00000206416.2 |
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| CDS CAA 90 bp | AAGTCAAATTCTGTAGGCATGTGCGGCTTTTCCTCCTCCTCTTCTTaGGCCTCTGGCTCCTCGTCTGATCTCTCCTCTTCACTCTGGGCC | + |
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Preference number: 6 (lower is better) Translates to: KSNSVGMCGFSSSSS*ASGSSSDLSSSLWA Trigger: GGCCCAGAGTGAAGAGGAGAGATCAGACGAGGAGCCAGAGGCCAAAGAAGAGGAGGAGGAAAAGCCGCACATGCCTACAGAATTTGACTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200948.2 |
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| CDS GCA 72 bp | TCTAAGCTGAAGAGGTCTCTCCCGGTCCGGAGGATTTaGTCCTCTAGTTTCTTATGGCGCTTCATGTCTGAG | + |
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Preference number: 6 (lower is better) Translates to: SKLKRSLPVRRI*SSSFLWRFMSE Trigger: CTCAGACATGAAGCGCCATAAGAAACTAGAGGAGCAAATCCTCCGGACCGGGAGAGACCTCTTCAGCTTAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000162069.3 ENSMUST00000200948.2 |
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