Pregenerated sensors for PAFAH1B3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000005447Ensembl transcript IDs: ENSMUST00000005583.12, ENSMUST00000108410.8, ENSMUST00000148150.8, ENSMUST00000155118.2
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AACCGATGGTGCAGAGACATCCAGCGCCCGTCACCCTGCACGTCTTaGACAGGCGTGGGCTTGCTGGCCGGGTTCTCCCCTTCCCCACTC | + |
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Preference number: 5 (lower is better) Translates to: NRWCRDIQRPSPCTS*TGVGLLAGFSPSPL Trigger: GAGTGGGGAAGGGGAGAACCCGGCCAGCAAGCCCACGCCTGTGCAAGACGTGCAGGGTGACGGGCGCTGGATGTCTCTGCACCATCGGTT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000005583.12 ENSMUST00000148150.8 ENSMUST00000155118.2 |
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| CDS GCA 90 bp | TCCGCTACAAACCGATGGTGCAGAGACATCCAGCGCCCGTCACCCTaGACGTCTTGCACAGGCGTGGGCTTGCTGGCCGGGTTCTCCCCT | + |
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Preference number: 5 (lower is better) Translates to: SATNRWCRDIQRPSP*TSCTGVGLLAGFSP Trigger: AGGGGAGAACCCGGCCAGCAAGCCCACGCCTGTGCAAGACGTGCAGGGTGACGGGCGCTGGATGTCTCTGCACCATCGGTTTGTAGCGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000005583.12 ENSMUST00000148150.8 ENSMUST00000155118.2 |
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| CDS CCA 90 bp | TGCTGCCCGAACCAGCTCGTTTACCTGTCGGTTTTTCTCTCGAAGTaGGTTGGGGTGCTGGCCTCTCGGAAGCAGGCCCAGCACAACCAC | + |
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Preference number: 5 (lower is better) Translates to: CCPNQLVYLSVFLSK*VGVLASRKQAQHNH Trigger: GTGGTTGTGCTGGGCCTGCTTCCGAGAGGCCAGCACCCCAACCCACTTCGAGAGAAAAACCGACAGGTAAACGAGCTGGTTCGGGCAGCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000005583.12 ENSMUST00000108410.8 |
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| CDS GCA 90 bp | CACTCTTCCAAGGCTCTCACCAGCACAACCACCCGTGCCTGGGGCTaGAGCTTGTTCACCAGTTGTACGATGGCTTTGATGCCACCTGTC | + |
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Preference number: 5 (lower is better) Translates to: HSSKALTSTTTRAWG*SLFTSCTMALMPPV Trigger: GACAGGTGGCATCAAAGCCATCGTACAACTGGTGAACAAGCTGCAGCCCCAGGCACGGGTGGTTGTGCTGGTGAGAGCCTTGGAAGAGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155118.2 |
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| CDS GCA 90 bp | GGCCGGATGTGCTCCAGCTCCCCGTTCTCAAGCCGCCAGAGTACATaGTGTGTGCTGTCACCACCAATGCCAAAGTTAAGTGCATGCAGA | + |
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Preference number: 5 (lower is better) Translates to: GRMCSSSPFSSRQST*CVLSPPMPKLSACR Trigger: TCTGCATGCACTTAACTTTGGCATTGGTGGTGACAGCACACAGCATGTACTCTGGCGGCTTGAGAACGGGGAGCTGGAGCACATCCGGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000005583.12 ENSMUST00000108410.8 ENSMUST00000148150.8 ENSMUST00000155118.2 |
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| CDS CCA 90 bp | CTTTGCCACTCTTCCAAGGCTCTCACCAGCACAACCACCCGTGCCTaGGGCTGCAGCTTGTTCACCAGTTGTACGATGGCTTTGATGCCA | + |
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Preference number: 5 (lower is better) Translates to: LCHSSKALTSTTTRA*GCSLFTSCTMALMP Trigger: TGGCATCAAAGCCATCGTACAACTGGTGAACAAGCTGCAGCCCCAGGCACGGGTGGTTGTGCTGGTGAGAGCCTTGGAAGAGTGGCAAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155118.2 |
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| CDS TCA 90 bp | CCCGTGCCTGGGGCTGCAGCTTGTTCACCAGTTGTACGATGGCTTTaGTGCCACCTGTCACTTGTTCTGCTGTGTGGCTATGGTTGTTGG | + |
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Preference number: 5 (lower is better) Translates to: PVPGAAACSPVVRWL*CHLSLVLLCGYGCW Trigger: CCAACAACCATAGCCACACAGCAGAACAAGTGACAGGTGGCATCAAAGCCATCGTACAACTGGTGAACAAGCTGCAGCCCCAGGCACGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000005583.12 ENSMUST00000108410.8 ENSMUST00000148150.8 ENSMUST00000155118.2 |
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| CDS CCA 90 bp | ACGATGGCTTTGATGCCACCTGTCACTTGTTCTGCTGTGTGGCTATaGTTGTTGGTGCCCACCCAGACCACCACAATCTTGGGCCGGATG | + |
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Preference number: 5 (lower is better) Translates to: TMALMPPVTCSAVWL*LLVPTQTTTILGRM Trigger: CATCCGGCCCAAGATTGTGGTGGTCTGGGTGGGCACCAACAACCATAGCCACACAGCAGAACAAGTGACAGGTGGCATCAAAGCCATCGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005583.12 ENSMUST00000108410.8 ENSMUST00000148150.8 ENSMUST00000155118.2 |
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| CDS CCA 90 bp | AGTTGTACGATGGCTTTGATGCCACCTGTCACTTGTTCTGCTGTGTaGCTATGGTTGTTGGTGCCCACCCAGACCACCACAATCTTGGGC | + |
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Preference number: 5 (lower is better) Translates to: SCTMALMPPVTCSAV*LWLLVPTQTTTILG Trigger: GCCCAAGATTGTGGTGGTCTGGGTGGGCACCAACAACCATAGCCACACAGCAGAACAAGTGACAGGTGGCATCAAAGCCATCGTACAACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005583.12 ENSMUST00000108410.8 ENSMUST00000148150.8 ENSMUST00000155118.2 |
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| CDS GCA 90 bp | GTTCACCAGTTGTACGATGGCTTTGATGCCACCTGTCACTTGTTCTaGTGTGTGGCTATGGTTGTTGGTGCCCACCCAGACCACCACAAT | + |
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Preference number: 5 (lower is better) Translates to: VHQLYDGFDATCHLF*CVAMVVGAHPDHHN Trigger: ATTGTGGTGGTCTGGGTGGGCACCAACAACCATAGCCACACAGCAGAACAAGTGACAGGTGGCATCAAAGCCATCGTACAACTGGTGAAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005583.12 ENSMUST00000108410.8 ENSMUST00000148150.8 ENSMUST00000155118.2 |
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| CDS GCA 90 bp | AGTACATGCTGTGTGCTGTCACCACCAATGCCAAAGTTAAGTGCATaGAGAGGTGAGAAGAGCTCCCGCCAGATCTCACATTGGTGCATT | + |
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Preference number: 5 (lower is better) Translates to: STCCVLSPPMPKLSA*RGEKSSRQISHWCI Trigger: AATGCACCAATGTGAGATCTGGCGGGAGCTCTTCTCACCTCTGCATGCACTTAACTTTGGCATTGGTGGTGACAGCACACAGCATGTACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005583.12 ENSMUST00000148150.8 ENSMUST00000155118.2 |
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| CDS GCA 90 bp | GGCGGCTCAGGTGTAGGTAATCATACATGTCATGGTGACTTATGGTaGCATCAGAATGCACAAACCCAGGGTCTGCATCTAAGAAGTGGG | + |
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Preference number: 5 (lower is better) Translates to: GGSGVGNHTCHGDLW*HQNAQTQGLHLRSG Trigger: CCCACTTCTTAGATGCAGACCCTGGGTTTGTGCATTCTGATGGCACCATAAGTCACCATGACATGTATGATTACCTACACCTGAGCCGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005583.12 ENSMUST00000108410.8 |
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| CDS CCA 90 bp | CCAGGCGGCTCAGGTGTAGGTAATCATACATGTCATGGTGACTTATaGTGCCATCAGAATGCACAAACCCAGGGTCTGCATCTAAGAAGT | + |
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Preference number: 5 (lower is better) Translates to: PGGSGVGNHTCHGDL*CHQNAQTQGLHLRS Trigger: ACTTCTTAGATGCAGACCCTGGGTTTGTGCATTCTGATGGCACCATAAGTCACCATGACATGTATGATTACCTACACCTGAGCCGCCTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005583.12 ENSMUST00000108410.8 |
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| CDS CCA 72 bp | TCCAGCGCCCGTCACCCTGCACGTCTTGCACAGGCGTaGGCTTGCTGGCCGGGTTCTCCCCTTCCCCACTCA | + |
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Preference number: 6 (lower is better) Translates to: SSARHPARLAQA*ACWPGSPLPHS Trigger: TGAGTGGGGAAGGGGAGAACCCGGCCAGCAAGCCCACGCCTGTGCAAGACGTGCAGGGTGACGGGCGCTGGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000005583.12 ENSMUST00000148150.8 ENSMUST00000155118.2 |
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| CDS CAA 72 bp | GTGCAGAGACATCCAGCGCCCGTCACCCTGCACGTCTaGCACAGGCGTGGGCTTGCTGGCCGGGTTCTCCCC | + |
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Preference number: 6 (lower is better) Translates to: VQRHPAPVTLHV*HRRGLAGRVLP Trigger: GGGGAGAACCCGGCCAGCAAGCCCACGCCTGTGCAAGACGTGCAGGGTGACGGGCGCTGGATGTCTCTGCAC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005583.12 ENSMUST00000148150.8 ENSMUST00000155118.2 |
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| CDS GCA 72 bp | AACCGATGGTGCAGAGACATCCAGCGCCCGTCACCCTaGACGTCTTGCACAGGCGTGGGCTTGCTGGCCGGG | + |
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Preference number: 6 (lower is better) Translates to: NRWCRDIQRPSP*TSCTGVGLLAG Trigger: CCCGGCCAGCAAGCCCACGCCTGTGCAAGACGTGCAGGGTGACGGGCGCTGGATGTCTCTGCACCATCGGTT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005583.12 ENSMUST00000148150.8 ENSMUST00000155118.2 |
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| CDS CAA 90 bp | AAACCGATGGTGCAGAGACATCCAGCGCCCGTCACCCTGCACGTCTaGCACAGGCGTGGGCTTGCTGGCCGGGTTCTCCCCTTCCCCACT | + |
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Preference number: 6 (lower is better) Translates to: KPMVQRHPAPVTLHV*HRRGLAGRVLPFPT Trigger: AGTGGGGAAGGGGAGAACCCGGCCAGCAAGCCCACGCCTGTGCAAGACGTGCAGGGTGACGGGCGCTGGATGTCTCTGCACCATCGGTTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000005583.12 ENSMUST00000148150.8 ENSMUST00000155118.2 |
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| CDS CCA 72 bp | CCTCTCGGAAGCAGGCCCAGCACAACCACCCGTGCCTaGGGCTGCAGCTTGTTCACCAGTTGTACGATGGCT | + |
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Preference number: 6 (lower is better) Translates to: PLGSRPSTTTRA*GCSLFTSCTMA Trigger: AGCCATCGTACAACTGGTGAACAAGCTGCAGCCCCAGGCACGGGTGGTTGTGCTGGGCCTGCTTCCGAGAGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005583.12 ENSMUST00000108410.8 ENSMUST00000148150.8 |
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| CDS GCA 72 bp | GGAAGCAGGCCCAGCACAACCACCCGTGCCTGGGGCTaGAGCTTGTTCACCAGTTGTACGATGGCTTTGATG | + |
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Preference number: 6 (lower is better) Translates to: GSRPSTTTRAWG*SLFTSCTMALM Trigger: CATCAAAGCCATCGTACAACTGGTGAACAAGCTGCAGCCCCAGGCACGGGTGGTTGTGCTGGGCCTGCTTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000005583.12 ENSMUST00000108410.8 ENSMUST00000148150.8 |
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| CDS CAA 90 bp | CTCGGAAGCAGGCCCAGCACAACCACCCGTGCCTGGGGCTGCAGCTaGTTCACCAGTTGTACGATGGCTTTGATGCCACCTGTCACTTGT | + |
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Preference number: 6 (lower is better) Translates to: LGSRPSTTTRAWGCS*FTSCTMALMPPVTC Trigger: ACAAGTGACAGGTGGCATCAAAGCCATCGTACAACTGGTGAACAAGCTGCAGCCCCAGGCACGGGTGGTTGTGCTGGGCCTGCTTCCGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000005583.12 ENSMUST00000108410.8 ENSMUST00000148150.8 |
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| CDS CCA 72 bp | GCTCGTTTACCTGTCGGTTTTTCTCTCGAAGTGGGTTaGGGTGCTGGCCTCTCGGAAGCAGGCCCAGCACAA | + |
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Preference number: 6 (lower is better) Translates to: ARLPVGFSLEVG*GAGLSEAGPAQ Trigger: TTGTGCTGGGCCTGCTTCCGAGAGGCCAGCACCCCAACCCACTTCGAGAGAAAAACCGACAGGTAAACGAGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005583.12 ENSMUST00000108410.8 |
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| CDS CCA 72 bp | AACCAGCTCGTTTACCTGTCGGTTTTTCTCTCGAAGTaGGTTGGGGTGCTGGCCTCTCGGAAGCAGGCCCAG | + |
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Preference number: 6 (lower is better) Translates to: NQLVYLSVFLSK*VGVLASRKQAQ Trigger: CTGGGCCTGCTTCCGAGAGGCCAGCACCCCAACCCACTTCGAGAGAAAAACCGACAGGTAAACGAGCTGGTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000005583.12 ENSMUST00000108410.8 |
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| CDS CCA 72 bp | TCTTCCAAGGCTCTCACCAGCACAACCACCCGTGCCTaGGGCTGCAGCTTGTTCACCAGTTGTACGATGGCT | + |
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Preference number: 6 (lower is better) Translates to: SSKALTSTTTRA*GCSLFTSCTMA Trigger: AGCCATCGTACAACTGGTGAACAAGCTGCAGCCCCAGGCACGGGTGGTTGTGCTGGTGAGAGCCTTGGAAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155118.2 |
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| CDS CAA 72 bp | CCACCTGTCACTTGTTCTGCTGTGTGGCTATGGTTGTaGGTGCCCACCCAGACCACCACAATCTTGGGCCGG | + |
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Preference number: 6 (lower is better) Translates to: PPVTCSAVWLWL*VPTQTTTILGR Trigger: CCGGCCCAAGATTGTGGTGGTCTGGGTGGGCACCAACAACCATAGCCACACAGCAGAACAAGTGACAGGTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005583.12 ENSMUST00000108410.8 ENSMUST00000148150.8 ENSMUST00000155118.2 |
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| CDS CAA 72 bp | CTCACCAGCACAACCACCCGTGCCTGGGGCTGCAGCTaGTTCACCAGTTGTACGATGGCTTTGATGCCACCT | + |
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Preference number: 6 (lower is better) Translates to: LTSTTTRAWGCS*FTSCTMALMPP Trigger: AGGTGGCATCAAAGCCATCGTACAACTGGTGAACAAGCTGCAGCCCCAGGCACGGGTGGTTGTGCTGGTGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155118.2 |
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| CDS CAA 90 bp | GCTTTGATGCCACCTGTCACTTGTTCTGCTGTGTGGCTATGGTTGTaGGTGCCCACCCAGACCACCACAATCTTGGGCCGGATGTGCTCC | + |
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Preference number: 6 (lower is better) Translates to: ALMPPVTCSAVWLWL*VPTQTTTILGRMCS Trigger: GGAGCACATCCGGCCCAAGATTGTGGTGGTCTGGGTGGGCACCAACAACCATAGCCACACAGCAGAACAAGTGACAGGTGGCATCAAAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005583.12 ENSMUST00000108410.8 ENSMUST00000148150.8 ENSMUST00000155118.2 |
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| CDS CAA 90 bp | TCCAAGGCTCTCACCAGCACAACCACCCGTGCCTGGGGCTGCAGCTaGTTCACCAGTTGTACGATGGCTTTGATGCCACCTGTCACTTGT | + |
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Preference number: 6 (lower is better) Translates to: SKALTSTTTRAWGCS*FTSCTMALMPPVTC Trigger: ACAAGTGACAGGTGGCATCAAAGCCATCGTACAACTGGTGAACAAGCTGCAGCCCCAGGCACGGGTGGTTGTGCTGGTGAGAGCCTTGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155118.2 |
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| CDS GCA 72 bp | AAGGCTCTCACCAGCACAACCACCCGTGCCTGGGGCTaGAGCTTGTTCACCAGTTGTACGATGGCTTTGATG | + |
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Preference number: 6 (lower is better) Translates to: KALTSTTTRAWG*SLFTSCTMALM Trigger: CATCAAAGCCATCGTACAACTGGTGAACAAGCTGCAGCCCCAGGCACGGGTGGTTGTGCTGGTGAGAGCCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155118.2 |
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| CDS CCA 72 bp | CACCTGTCACTTGTTCTGCTGTGTGGCTATGGTTGTTaGTGCCCACCCAGACCACCACAATCTTGGGCCGGA | + |
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Preference number: 6 (lower is better) Translates to: HLSLVLLCGYGC*CPPRPPQSWAG Trigger: TCCGGCCCAAGATTGTGGTGGTCTGGGTGGGCACCAACAACCATAGCCACACAGCAGAACAAGTGACAGGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005583.12 ENSMUST00000108410.8 ENSMUST00000148150.8 ENSMUST00000155118.2 |
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| CDS GCA 72 bp | CTGTCACTTGTTCTGCTGTGTGGCTATGGTTGTTGGTaGCCACCCAGACCACCACAATCTTGGGCCGGATGT | + |
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Preference number: 6 (lower is better) Translates to: LSLVLLCGYGCW*PPRPPQSWAGC Trigger: ACATCCGGCCCAAGATTGTGGTGGTCTGGGTGGGCACCAACAACCATAGCCACACAGCAGAACAAGTGACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005583.12 ENSMUST00000108410.8 ENSMUST00000148150.8 ENSMUST00000155118.2 |
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| CDS GCA 72 bp | TGCTCCAGCTCCCCGTTCTCAAGCCGCCAGAGTACATaGTGTGTGCTGTCACCACCAATGCCAAAGTTAAGT | + |
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Preference number: 6 (lower is better) Translates to: CSSSPFSSRQST*CVLSPPMPKLS Trigger: ACTTAACTTTGGCATTGGTGGTGACAGCACACAGCATGTACTCTGGCGGCTTGAGAACGGGGAGCTGGAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000005583.12 ENSMUST00000108410.8 ENSMUST00000148150.8 ENSMUST00000155118.2 |
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| CDS CCA 72 bp | ATGGCTTTGATGCCACCTGTCACTTGTTCTGCTGTGTaGCTATGGTTGTTGGTGCCCACCCAGACCACCACA | + |
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Preference number: 6 (lower is better) Translates to: MALMPPVTCSAV*LWLLVPTQTTT Trigger: TGTGGTGGTCTGGGTGGGCACCAACAACCATAGCCACACAGCAGAACAAGTGACAGGTGGCATCAAAGCCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005583.12 ENSMUST00000108410.8 ENSMUST00000148150.8 ENSMUST00000155118.2 |
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| CDS GCA 72 bp | TTGTACGATGGCTTTGATGCCACCTGTCACTTGTTCTaGTGTGTGGCTATGGTTGTTGGTGCCCACCCAGAC | + |
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Preference number: 6 (lower is better) Translates to: LYDGFDATCHLF*CVAMVVGAHPD Trigger: GTCTGGGTGGGCACCAACAACCATAGCCACACAGCAGAACAAGTGACAGGTGGCATCAAAGCCATCGTACAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000005583.12 ENSMUST00000108410.8 ENSMUST00000148150.8 ENSMUST00000155118.2 |
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| CDS CAA 72 bp | TGGGGCTGCAGCTTGTTCACCAGTTGTACGATGGCTTaGATGCCACCTGTCACTTGTTCTGCTGTGTGGCTA | + |
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Preference number: 6 (lower is better) Translates to: WGCSLFTSCTMA*MPPVTCSAVWL Trigger: TAGCCACACAGCAGAACAAGTGACAGGTGGCATCAAAGCCATCGTACAACTGGTGAACAAGCTGCAGCCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000005583.12 ENSMUST00000108410.8 ENSMUST00000148150.8 ENSMUST00000155118.2 |
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| CDS TCA 72 bp | AAGAGCTCCCGCCAGATCTCACATTGGTGCATTAGCTaGACCAAGGAGTCCCCGATAAAGACTACTTCGGGT | + |
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Preference number: 6 (lower is better) Translates to: KSSRQISHWCIS*TKESPIKTTSG Trigger: ACCCGAAGTAGTCTTTATCGGGGACTCCTTGGTTCAGCTAATGCACCAATGTGAGATCTGGCGGGAGCTCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000005583.12 ENSMUST00000148150.8 ENSMUST00000155118.2 |
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| CDS CAA 72 bp | GAGTCCCCGATAAAGACTACTTCGGGTTCCTTGTCTTaGCTGTCCGCTACAAACCGATGGTGCAGAGACATC | + |
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Preference number: 6 (lower is better) Translates to: ESPIKTTSGSLS*LSATNRWCRDI Trigger: GATGTCTCTGCACCATCGGTTTGTAGCGGACAGCAAAGACAAGGAACCCGAAGTAGTCTTTATCGGGGACTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000005583.12 ENSMUST00000148150.8 ENSMUST00000155118.2 |
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| CDS CAA 72 bp | ACCAAGGAGTCCCCGATAAAGACTACTTCGGGTTCCTaGTCTTTGCTGTCCGCTACAAACCGATGGTGCAGA | + |
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Preference number: 6 (lower is better) Translates to: TKESPIKTTSGS*SLLSATNRWCR Trigger: TCTGCACCATCGGTTTGTAGCGGACAGCAAAGACAAGGAACCCGAAGTAGTCTTTATCGGGGACTCCTTGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000005583.12 ENSMUST00000148150.8 ENSMUST00000155118.2 |
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| CDS GCA 72 bp | GGTGTAGGTAATCATACATGTCATGGTGACTTATGGTaGCATCAGAATGCACAAACCCAGGGTCTGCATCTA | + |
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Preference number: 6 (lower is better) Translates to: GVGNHTCHGDLW*HQNAQTQGLHL Trigger: TAGATGCAGACCCTGGGTTTGTGCATTCTGATGGCACCATAAGTCACCATGACATGTATGATTACCTACACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005583.12 ENSMUST00000108410.8 |
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| CDS CCA 72 bp | TCAGGTGTAGGTAATCATACATGTCATGGTGACTTATaGTGCCATCAGAATGCACAAACCCAGGGTCTGCAT | + |
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Preference number: 6 (lower is better) Translates to: SGVGNHTCHGDL*CHQNAQTQGLH Trigger: ATGCAGACCCTGGGTTTGTGCATTCTGATGGCACCATAAGTCACCATGACATGTATGATTACCTACACCTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005583.12 ENSMUST00000108410.8 |
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