Pregenerated sensors for PAFAH1B2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000003131Ensembl transcript IDs: ENSMUST00000172450.3
Found 87 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAGGTTCAGTCAGCCTGCTGCAGTGGTCCCGGAGAGGAAGCTCACTaGCAAGCCCCCACTCATTGTTCCCACACAAGCTGCTCAGAGTCA | + |
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Preference number: 1 (lower is better) Translates to: EVQSACCSGPGEEAH*QAPTHCSHTSCSES Trigger: TGACTCTGAGCAGCTTGTGTGGGAACAATGAGTGGGGGCTTGCCAGTGAGCTTCCTCTCCGGGACCACTGCAGCAGGCTGACTGAACCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR CCA 90 bp | CATAGTCACAAGCTCCCTTGGGGAGGTTCAGTCAGCCTGCTGCAGTaGTCCCGGAGAGGAAGCTCACTGGCAAGCCCCCACTCATTGTTC | + |
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Preference number: 1 (lower is better) Translates to: HSHKLPWGGSVSLLQ*SRRGSSLASPHSLF Trigger: GAACAATGAGTGGGGGCTTGCCAGTGAGCTTCCTCTCCGGGACCACTGCAGCAGGCTGACTGAACCTCCCCAAGGGAGCTTGTGACTATG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR TCA 90 bp | AGTTCATCCTTGGTCAAGAGAAACTACAAGGGCATGCTACGGGAGTaGCCGAATGGATTCACTTGGACCATACTCCCACTCTCCGAGGAA | + |
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Preference number: 1 (lower is better) Translates to: SSSLVKRNYKGMLRE*PNGFTWTILPLSEE Trigger: TTCCTCGGAGAGTGGGAGTATGGTCCAAGTGAATCCATTCGGTCACTCCCGTAGCATGCCCTTGTAGTTTCTCTTGACCAAGGATGAACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR GCA 90 bp | CTCACAGGACTAGTTCATCCTTGGTCAAGAGAAACTACAAGGGCATaGTACGGGAGTGACCGAATGGATTCACTTGGACCATACTCCCAC | + |
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Preference number: 1 (lower is better) Translates to: LTGLVHPWSRETTRA*YGSDRMDSLGPYSH Trigger: GTGGGAGTATGGTCCAAGTGAATCCATTCGGTCACTCCCGTAGCATGCCCTTGTAGTTTCTCTTGACCAAGGATGAACTAGTCCTGTGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR CCA 90 bp | CTTGGTCAAGAGAAACTACAAGGGCATGCTACGGGAGTGACCGAATaGATTCACTTGGACCATACTCCCACTCTCCGAGGAACACACAAA | + |
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Preference number: 1 (lower is better) Translates to: LGQEKLQGHATGVTE*IHLDHTPTLRGTHK Trigger: TTTGTGTGTTCCTCGGAGAGTGGGAGTATGGTCCAAGTGAATCCATTCGGTCACTCCCGTAGCATGCCCTTGTAGTTTCTCTTGACCAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR GCA 90 bp | ATGAGGAACCTTAAAAGATCAATGAGCTACCTCCATGGTAATACATaGATGCCTTTACTGTCAGTCTTCAGGAGTCCAGAGGCAGGCAGA | + |
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Preference number: 1 (lower is better) Translates to: MRNLKRSMSYLHGNT*MPLLSVFRSPEAGR Trigger: TCTGCCTGCCTCTGGACTCCTGAAGACTGACAGTAAAGGCATGCATGTATTACCATGGAGGTAGCTCATTGATCTTTTAAGGTTCCTCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR TCA 90 bp | CTTATAACTTTACTCACCCGTCCTAGTGTCCTACCCTGTGAGAAGTaGTGGAGTCAATTTGGTACATTCAGTTCCAGAGGACATAAGACG | + |
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Preference number: 1 (lower is better) Translates to: LITLLTRPSVLPCEK*WSQFGTFSSRGHKT Trigger: CGTCTTATGTCCTCTGGAACTGAATGTACCAAATTGACTCCATCACTTCTCACAGGGTAGGACACTAGGACGGGTGAGTAAAGTTATAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR CCA 90 bp | ATGTCATTGGAAGCAGACAAACTGCCTACTTTAAAGCTTTCTTTCTaGCTAGGTGTGGTGGTAAACACTGTACCCTCAGCACTTGGGAAA | + |
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Preference number: 1 (lower is better) Translates to: MSLEADKLPTLKLSF*LGVVVNTVPSALGK Trigger: TTTCCCAAGTGCTGAGGGTACAGTGTTTACCACCACACCTAGCCAGAAAGAAAGCTTTAAAGTAGGCAGTTTGTCTGCTTCCAATGACAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR TCA 90 bp | CAGGGAGAGCTGGCTCAAAGCTGGGCGCAACTATATAAGTCAGGATaGCCTCGGAGAGAATGTAATATTCAATTTCTGAATCTCTTTTGT | + |
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Preference number: 1 (lower is better) Translates to: QGELAQSWAQLYKSG*PRRECNIQFLNLFC Trigger: ACAAAAGAGATTCAGAAATTGAATATTACATTCTCTCCGAGGTCATCCTGACTTATATAGTTGCGCCCAGCTTTGAGCCAGCTCTCCCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR TCA 90 bp | TCGCTCCAGATCATCTTTAGCTACACAAGGGATTCCAAGCCAGCCTaGGCTACATGCCAAAAATCACAAACAAATCATCTTGTTGGGTAT | + |
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Preference number: 1 (lower is better) Translates to: SLQIIFSYTRDSKPA*ATCQKSQTNHLVGY Trigger: ATACCCAACAAGATGATTTGTTTGTGATTTTTGGCATGTAGCTCAGGCTGGCTTGGAATCCCTTGTGTAGCTAAAGATGATCTGGAGCGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR CAA 90 bp | CTGCAGTGGTCCCGGAGAGGAAGCTCACTGGCAAGCCCCCACTCATaGTTCCCACACAAGCTGCTCAGAGTCAGGAGCTGGCTGTGCTCC | + |
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Preference number: 2 (lower is better) Translates to: LQWSRRGSSLASPHS*FPHKLLRVRSWLCS Trigger: GGAGCACAGCCAGCTCCTGACTCTGAGCAGCTTGTGTGGGAACAATGAGTGGGGGCTTGCCAGTGAGCTTCCTCTCCGGGACCACTGCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR-3UTR CCA 90 bp | TGCAGTGGTCCCGGAGAGGAAGCTCACTGGCAAGCCCCCACTCATTGTTCCCACCCGAATGGATTCACTTaGACCATACTCCCACTCTCC | + |
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Preference number: 2 (lower is better) Translates to: CSGPGEEAHWQAPTHCSHPNGFT*TILPLS Trigger: GGAGAGTGGGAGTATGGTCCAAGTGAATCCATTCGG...GTGGGAACAATGAGTGGGGGCTTGCCAGTGAGCTTCCTCTCCGGGACCACTGCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR-3UTR CCA 90 bp | AGGCAGAGGCAAGTGGTCCAAGTCTGTAATTCCAGCAGGAGGAGACCTCATCTAGTCAGCCTGCTGCAGTaGTCCCGGAGAGGAAGCTCA | + |
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Preference number: 2 (lower is better) Translates to: RQRQVVQVCNSSRRRPHLVSLLQ*SRRGSS Trigger: TGAGCTTCCTCTCCGGGACCACTGCAGCAGGCTGAC...TAGATGAGGTCTCCTCCTGCTGGAATTACAGACTTGGACCACTTGCCTCTGCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR-3UTR TCA 90 bp | TGCAGTGGTCCCGGAGAGGAAGCTCACTGGCAAGCCCCCACTCATTGTTCCCACATAGTACATCTATTGTaGGAGCAGCTTCCCTGTTTC | + |
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Preference number: 2 (lower is better) Translates to: CSGPGEEAHWQAPTHCSHIVHLL*EQLPCF Trigger: GAAACAGGGAAGCTGCTCTCACAATAGATGTACTAT...GTGGGAACAATGAGTGGGGGCTTGCCAGTGAGCTTCCTCTCCGGGACCACTGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR CAA 90 bp | GAGAAACTACAAGGGCATGCTACGGGAGTGACCGAATGGATTCACTaGGACCATACTCCCACTCTCCGAGGAACACACAAACACCTGGGT | + |
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Preference number: 2 (lower is better) Translates to: EKLQGHATGVTEWIH*DHTPTLRGTHKHLG Trigger: ACCCAGGTGTTTGTGTGTTCCTCGGAGAGTGGGAGTATGGTCCAAGTGAATCCATTCGGTCACTCCCGTAGCATGCCCTTGTAGTTTCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR-3UTR TCA 90 bp | TGCAGTGGTCCCGGAGAGGAAGCTCACTGGCAAGCCCCCACTCATTGTTCCCACTATTGTACTCTTGCTTaGTGTTGTCCTAGGGAAAAG | + |
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Preference number: 2 (lower is better) Translates to: CSGPGEEAHWQAPTHCSHYCTLA*CCPREK Trigger: CTTTTCCCTAGGACAACATCAAGCAAGAGTACAATA...GTGGGAACAATGAGTGGGGGCTTGCCAGTGAGCTTCCTCTCCGGGACCACTGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR-3UTR GCA 90 bp | CTCACACAAAACACCTGGGGAGGTCTCCTGAAGCATTTCTCCCTAGAAGGCACAAGAGGGAAGGCTGCATaGACGGGTCTATTACAGACA | + |
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Preference number: 2 (lower is better) Translates to: LTQNTWGGLLKHFSLEGTRGKAA*TGLLQT Trigger: TGTCTGTAATAGACCCGTGCATGCAGCCTTCCCTCT...TGTGCCTTCTAGGGAGAAATGCTTCAGGAGACCTCCCCAGGTGTTTTGTGTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR-3UTR GCA 90 bp | CAGGAGGAGACCTCATCTAAAAATAATCTAAGAGGGCCTCTTAGGCAACTGACAAGTGTCTCTGCTGGCTaGCAGGCCCTTAGCCAATGG | + |
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Preference number: 2 (lower is better) Translates to: QEETSSKNNLRGPLRQLTSVSAG*QALSQW Trigger: CCATTGGCTAAGGGCCTGGCAGCCAGCAGAGACACT...TGTCAGTTGCCTAAGAGGCCCTCTTAGATTATTTTTAGATGAGGTCTCCTCCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR-3UTR GCA 90 bp | GCTCTACTCACACAAAACACCTGGGGAGGTCTCCTGAAGCATTTCTCCCTAGAAGGGTACTGTAGACTCTaGCTAAGAACATCACCACCC | + |
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Preference number: 2 (lower is better) Translates to: ALLTQNTWGGLLKHFSLEGYCRL*LRTSPP Trigger: GGGTGGTGATGTTCTTAGGCAGAGTCTACAGTACCC...TTCTAGGGAGAAATGCTTCAGGAGACCTCCCCAGGTGTTTTGTGTGAGTAGAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR CAA 90 bp | CCTTTAATTCCAGCGCTTGGGAGGCAGAGACAAGTGATCTCTAAATaGAAGGCCAGCCTGATTTACAGAGCTTCAGGCCAGTCAGGACTA | + |
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Preference number: 2 (lower is better) Translates to: PLIPALGRQRQVISK*KASLIYRASGQSGL Trigger: TAGTCCTGACTGGCCTGAAGCTCTGTAAATCAGGCTGGCCTTCAATTTAGAGATCACTTGTCTCTGCCTCCCAAGCGCTGGAATTAAAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR-3UTR CCA 90 bp | TCCCTCCGCTTGGGAGACATGGGCAATGAGGCTCCGTCCAAGGTTCACATCCTACAAGACTTATTTTGCTaGGTGAGGTTTTTGACAGAA | + |
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Preference number: 2 (lower is better) Translates to: SLRLGDMGNEAPSKVHILQDLFC*VRFLTE Trigger: TTCTGTCAAAAACCTCACCCAGCAAAATAAGTCTTG...TAGGATGTGAACCTTGGACGGAGCCTCATTGCCCATGTCTCCCAAGCGGAGGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR-3UTR CCA 90 bp | CTCACACAAAACACCTGGGGAGGTCTCCTGAAGCATTTCTCCCTAGAAGGCACATCAGGCATTATGGAATaGGAAACAATTCTGACCACC | + |
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Preference number: 2 (lower is better) Translates to: LTQNTWGGLLKHFSLEGTSGIME*ETILTT Trigger: GGTGGTCAGAATTGTTTCCCATTCCATAATGCCTGA...TGTGCCTTCTAGGGAGAAATGCTTCAGGAGACCTCCCCAGGTGTTTTGTGTGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR-3UTR CCA 90 bp | CTCACACAAAACACCTGGGGAGGTCTCCTGAAGCATTTCTCCCTAGAAGGCACACAAGCAAGCAAACAGTaGCAGAGTACTTGCTTAGTA | + |
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Preference number: 2 (lower is better) Translates to: LTQNTWGGLLKHFSLEGTQASKQ*QSTCLV Trigger: TACTAAGCAAGTACTCTGCCACTGTTTGCTTGCTTG...TGTGCCTTCTAGGGAGAAATGCTTCAGGAGACCTCCCCAGGTGTTTTGTGTGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR CAA 90 bp | TCACCCGTCCTAGTGTCCTACCCTGTGAGAAGTGATGGAGTCAATTaGGTACATTCAGTTCCAGAGGACATAAGACGACAAACAATCCAT | + |
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Preference number: 2 (lower is better) Translates to: SPVLVSYPVRSDGVN*VHSVPEDIRRQTIH Trigger: ATGGATTGTTTGTCGTCTTATGTCCTCTGGAACTGAATGTACCAAATTGACTCCATCACTTCTCACAGGGTAGGACACTAGGACGGGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR-3UTR GCA 90 bp | GTCCCTATTGGGATAAAAGATGGAAGGACTAACCAATTAAGGGGACAGAAACAAGTCAGGAGCTGGCTGTaGTCCCCTTTCCTAAGTTTC | + |
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Preference number: 2 (lower is better) Translates to: VPIGIKDGRTNQLRGQKQVRSWL*SPFLSF Trigger: GAAACTTAGGAAAGGGGAGCACAGCCAGCTCCTGAC...TTGTTTCTGTCCCCTTAATTGGTTAGTCCTTCCATCTTTTATCCCAATAGGGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR-3UTR CCA 90 bp | TGGGTGAGGTTTTTGACAGAAGTATCAGGATTGGATAGAAGTCCTCAACAATCCCTAAAGCAGGTGTGGTaGCGCACGCCTTTAATTCCA | + |
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Preference number: 2 (lower is better) Translates to: WVRFLTEVSGLDRSPQQSLKQVW*RTPLIP Trigger: TGGAATTAAAGGCGTGCGCCACCACACCTGCTTTAG...GGATTGTTGAGGACTTCTATCCAATCCTGATACTTCTGTCAAAAACCTCACCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR-3UTR CCA 90 bp | CATCTCCACCCCAATGTCATTGGAAGCAGACAAACTGCCTACTTTAAAGCTTTCACGGGAGTGACCGAATaGATTCACTTGGACCATACT | + |
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Preference number: 2 (lower is better) Translates to: HLHPNVIGSRQTAYFKAFTGVTE*IHLDHT Trigger: AGTATGGTCCAAGTGAATCCATTCGGTCACTCCCGT...GAAAGCTTTAAAGTAGGCAGTTTGTCTGCTTCCAATGACATTGGGGTGGAGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR-3UTR GCA 90 bp | GTCCCTATTGGGATAAAAGATGGAAGGACTAACCAATTAAGGGGACAGAAACAAGAAAGACCAAACAGCTaGTTCCTCACCCAGGAAGAG | + |
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Preference number: 2 (lower is better) Translates to: VPIGIKDGRTNQLRGQKQERPNS*FLTQEE Trigger: CTCTTCCTGGGTGAGGAAGCAGCTGTTTGGTCTTTC...TTGTTTCTGTCCCCTTAATTGGTTAGTCCTTCCATCTTTTATCCCAATAGGGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR-3UTR CCA 90 bp | TGGGTGAGGTTTTTGACAGAAGTATCAGGATTGGATAGAAGTCCTCAACAATCCCAGGCCCTTAGCCAATaGCAAAGTAGTTCTGTTCAC | + |
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Preference number: 2 (lower is better) Translates to: WVRFLTEVSGLDRSPQQSQALSQ*QSSSVH Trigger: GTGAACAGAACTACTTTGCCATTGGCTAAGGGCCTG...GGATTGTTGAGGACTTCTATCCAATCCTGATACTTCTGTCAAAAACCTCACCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR-3UTR TCA 90 bp | CAGGAGGAGACCTCATCTAAAAATAATCTAAGAGGGCCTCTTAGGCAACTGACATTTAGTCTCAGCATGTaGAAGGTGGAGCAACTAGAT | + |
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Preference number: 2 (lower is better) Translates to: QEETSSKNNLRGPLRQLTFSLSM*KVEQLD Trigger: ATCTAGTTGCTCCACCTTTCACATGCTGAGACTAAA...TGTCAGTTGCCTAAGAGGCCCTCTTAGATTATTTTTAGATGAGGTCTCCTCCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR-3UTR CCA 90 bp | AGAAAACTGGCAATATTCACACACCTTAGCACAGACAGGTTTCAGACACAGCATTTTAATTCCAGCGCTTaGGAGGCAGAGACAAGTGAT | + |
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Preference number: 2 (lower is better) Translates to: RKLAIFTHLSTDRFQTQHFNSSA*EAETSD Trigger: ATCACTTGTCTCTGCCTCCCAAGCGCTGGAATTAAA...ATGCTGTGTCTGAAACCTGTCTGTGCTAAGGTGTGTGAATATTGCCAGTTTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR-3UTR GCA 90 bp | AGAAAACTGGCAATATTCACACACCTTAGCACAGACAGGTTTCAGACACAGCATCTCCATGGTAATACATaGATGCCTTTACTGTCAGTC | + |
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Preference number: 2 (lower is better) Translates to: RKLAIFTHLSTDRFQTQHLHGNT*MPLLSV Trigger: GACTGACAGTAAAGGCATGCATGTATTACCATGGAG...ATGCTGTGTCTGAAACCTGTCTGTGCTAAGGTGTGTGAATATTGCCAGTTTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR-3UTR CCA 90 bp | CATCTCCACCCCAATGTCATTGGAAGCAGACAAACTGCCTACTTTAAAGCTTTCATATTAAATGAGCACTaGACAGAATGGATTCTAGTC | + |
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Preference number: 2 (lower is better) Translates to: HLHPNVIGSRQTAYFKAFILNEH*TEWILV Trigger: GACTAGAATCCATTCTGTCCAGTGCTCATTTAATAT...GAAAGCTTTAAAGTAGGCAGTTTGTCTGCTTCCAATGACATTGGGGTGGAGATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR-3UTR CCA 90 bp | GTCCCTATTGGGATAAAAGATGGAAGGACTAACCAATTAAGGGGACAGAAACAATTAAAGCTTTCTTTCTaGCTAGGTGTGGTGGTAAAC | + |
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Preference number: 2 (lower is better) Translates to: VPIGIKDGRTNQLRGQKQLKLSF*LGVVVN Trigger: GTTTACCACCACACCTAGCCAGAAAGAAAGCTTTAA...TTGTTTCTGTCCCCTTAATTGGTTAGTCCTTCCATCTTTTATCCCAATAGGGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR-3UTR TCA 90 bp | GTCCCTATTGGGATAAAAGATGGAAGGACTAACCAATTAAGGGGACAGAAACAATCTTTACTAGTGTGTTaGCTCAGTGTTAAGTGTCTT | + |
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Preference number: 2 (lower is better) Translates to: VPIGIKDGRTNQLRGQKQSLLVC*LSVKCL Trigger: AAGACACTTAACACTGAGTCAACACACTAGTAAAGA...TTGTTTCTGTCCCCTTAATTGGTTAGTCCTTCCATCTTTTATCCCAATAGGGAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR CCA 72 bp | AAGCTCCCTTGGGGAGGTTCAGTCAGCCTGCTGCAGTaGTCCCGGAGAGGAAGCTCACTGGCAAGCCCCCAC | + |
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Preference number: 3 (lower is better) Translates to: KLPWGGSVSLLQ*SRRGSSLASPH Trigger: GTGGGGGCTTGCCAGTGAGCTTCCTCTCCGGGACCACTGCAGCAGGCTGACTGAACCTCCCCAAGGGAGCTT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR GCA 72 bp | GTCACAAGCTCCCTTGGGGAGGTTCAGTCAGCCTGCTaGAGTGGTCCCGGAGAGGAAGCTCACTGGCAAGCC | + |
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Preference number: 3 (lower is better) Translates to: VTSSLGEVQSAC*SGPGEEAHWQA Trigger: GGCTTGCCAGTGAGCTTCCTCTCCGGGACCACTGCAGCAGGCTGACTGAACCTCCCCAAGGGAGCTTGTGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR CCA 72 bp | TCAGCCTGCTGCAGTGGTCCCGGAGAGGAAGCTCACTaGCAAGCCCCCACTCATTGTTCCCACACAAGCTGC | + |
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Preference number: 3 (lower is better) Translates to: SACCSGPGEEAH*QAPTHCSHTSC Trigger: GCAGCTTGTGTGGGAACAATGAGTGGGGGCTTGCCAGTGAGCTTCCTCTCCGGGACCACTGCAGCAGGCTGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR GCA 72 bp | GAAGGCACAGGAACCCAGCCAAGTAAGTCATCCGAGTaGAAGCTGCGGGGAACAGGAGGTGCTGTCCCAAGC | + |
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Preference number: 3 (lower is better) Translates to: EGTGTQPSKSSE*KLRGTGGAVPS Trigger: GCTTGGGACAGCACCTCCTGTTCCCCGCAGCTTGCACTCGGATGACTTACTTGGCTGGGTTCCTGTGCCTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR CCA 72 bp | ATGCCAGGGCATCTCCAACCTGCTACAGTAGAGACATaGCGCAGAAGGACCGAGTTCAAGGGCATCCACAGC | + |
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Preference number: 3 (lower is better) Translates to: MPGHLQPATVET*RRRTEFKGIHS Trigger: GCTGTGGATGCCCTTGAACTCGGTCCTTCTGCGCCATGTCTCTACTGTAGCAGGTTGGAGATGCCCTGGCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR CCA 72 bp | TACTGCTGCCGTGCTGTGTCATCAGGACGAGTACCTTaGTCTAGTCCCTCCGCTTGGGAGACATGGGCAATG | + |
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Preference number: 3 (lower is better) Translates to: YCCRAVSSGRVP*SSPSAWETWAM Trigger: CATTGCCCATGTCTCCCAAGCGGAGGGACTAGACCAAGGTACTCGTCCTGATGACACAGCACGGCAGCAGTA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR GCA 72 bp | CAGGAACCCAGCCAAGTAAGTCATCCGAGTGCAAGCTaGGGGGAACAGGAGGTGCTGTCCCAAGCAGTAAAA | + |
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Preference number: 3 (lower is better) Translates to: QEPSQVSHPSAS*GEQEVLSQAVK Trigger: TTTTACTGCTTGGGACAGCACCTCCTGTTCCCCGCAGCTTGCACTCGGATGACTTACTTGGCTGGGTTCCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR-3UTR CAA 90 bp | TCCCTCCGCTTGGGAGACATGGGCAATGAGGCTCCGTCCAAGGTTCACATCCTAACCGAATGGATTCACTaGGACCATACTCCCACTCTC | + |
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Preference number: 3 (lower is better) Translates to: SLRLGDMGNEAPSKVHILTEWIH*DHTPTL Trigger: GAGAGTGGGAGTATGGTCCAAGTGAATCCATTCGGT...TAGGATGTGAACCTTGGACGGAGCCTCATTGCCCATGTCTCCCAAGCGGAGGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR-3UTR CAA 90 bp | GCTCTACTCACACAAAACACCTGGGGAGGTCTCCTGAAGCATTTCTCCCTAGAAGCAAGCCCCCACTCATaGTTCCCACACAAGCTGCTC | + |
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Preference number: 3 (lower is better) Translates to: ALLTQNTWGGLLKHFSLEASPHS*FPHKLL Trigger: GAGCAGCTTGTGTGGGAACAATGAGTGGGGGCTTGC...TTCTAGGGAGAAATGCTTCAGGAGACCTCCCCAGGTGTTTTGTGTGAGTAGAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR CCA 72 bp | GAGAAACTACAAGGGCATGCTACGGGAGTGACCGAATaGATTCACTTGGACCATACTCCCACTCTCCGAGGA | + |
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Preference number: 3 (lower is better) Translates to: EKLQGHATGVTE*IHLDHTPTLRG Trigger: TCCTCGGAGAGTGGGAGTATGGTCCAAGTGAATCCATTCGGTCACTCCCGTAGCATGCCCTTGTAGTTTCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR TCA 72 bp | GAGTTCCAGGCCAGGCAGGGCCACATAAGGAGACTGTaGCCAATCTACAACACTCTCCTATATCTACTCAGG | + |
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Preference number: 3 (lower is better) Translates to: EFQARQGHIRRL*PIYNTLLYLLR Trigger: CCTGAGTAGATATAGGAGAGTGTTGTAGATTGGTCACAGTCTCCTTATGTGGCCCTGCCTGGCCTGGAACTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR GCA 72 bp | CCAATGGTAATCTACAATGCCAGGGCATCTCCAACCTaGTACAGTAGAGACATGGCGCAGAAGGACCGAGTT | + |
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Preference number: 3 (lower is better) Translates to: PMVIYNARASPT*YSRDMAQKDRV Trigger: AACTCGGTCCTTCTGCGCCATGTCTCTACTGTAGCAGGTTGGAGATGCCCTGGCATTGTAGATTACCATTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR GCA 72 bp | GAAAGGGAGACACTAGCAGCAGAAAGACCAAACAGCTaGTTCCTCACCCAGGAAGAGAAGACACATCGATCC | + |
|
Preference number: 3 (lower is better) Translates to: ERETLAAERPNS*FLTQEEKTHRS Trigger: GGATCGATGTGTCTTCTCTTCCTGGGTGAGGAAGCAGCTGTTTGGTCTTTCTGCTGCTAGTGTCTCCCTTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR CCA 72 bp | GGTAGAATAAAGATAGCAAAGCTAAAGCAGGTGTGGTaGCGCACGCCTTTAATTCCAGCGCTTGGGAGGCAG | + |
|
Preference number: 3 (lower is better) Translates to: GRIKIAKLKQVW*RTPLIPALGRQ Trigger: CTGCCTCCCAAGCGCTGGAATTAAAGGCGTGCGCCACCACACCTGCTTTAGCTTTGCTATCTTTATTCTACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR TCA 72 bp | TTGGTCAAGAGAAACTACAAGGGCATGCTACGGGAGTaGCCGAATGGATTCACTTGGACCATACTCCCACTC | + |
|
Preference number: 3 (lower is better) Translates to: LVKRNYKGMLRE*PNGFTWTILPL Trigger: GAGTGGGAGTATGGTCCAAGTGAATCCATTCGGTCACTCCCGTAGCATGCCCTTGTAGTTTCTCTTGACCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| 3UTR-3UTR CAA 90 bp | CTCACACAAAACACCTGGGGAGGTCTCCTGAAGCATTTCTCCCTAGAAGGCACACAAAGACTAACCAGTTaGTCACTGAAGCAATCTGGG | + |
|
Preference number: 3 (lower is better) Translates to: LTQNTWGGLLKHFSLEGTQRLTS*SLKQSG Trigger: CCCAGATTGCTTCAGTGACAAACTGGTTAGTCTTTG...TGTGCCTTCTAGGGAGAAATGCTTCAGGAGACCTCCCCAGGTGTTTTGTGTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR CCA 72 bp | AATGGTAGAATAAAGATAGCAAAGCTAAAGCAGGTGTaGTGGCGCACGCCTTTAATTCCAGCGCTTGGGAGG | + |
|
Preference number: 3 (lower is better) Translates to: NGRIKIAKLKQV*WRTPLIPALGR Trigger: CCTCCCAAGCGCTGGAATTAAAGGCGTGCGCCACCACACCTGCTTTAGCTTTGCTATCTTTATTCTACCATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| 3UTR CCA 72 bp | AGCAGTGTCTCTGCTGGCTGCCAGGCCCTTAGCCAATaGCAAAGTAGTTCTGTTCACGTCTTTAAAAACACA | + |
|
Preference number: 3 (lower is better) Translates to: SSVSAGCQALSQ*QSSSVHVFKNT Trigger: TGTGTTTTTAAAGACGTGAACAGAACTACTTTGCCATTGGCTAAGGGCCTGGCAGCCAGCAGAGACACTGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| 3UTR CCA 72 bp | GCTAGGTGTGGTGGTAAACACTGTACCCTCAGCACTTaGGAAATAGAAGCAGATGATTCGCTCCAGATCATC | + |
|
Preference number: 3 (lower is better) Translates to: ARCGGKHCTLST*EIEADDSLQII Trigger: GATGATCTGGAGCGAATCATCTGCTTCTATTTCCCAAGTGCTGAGGGTACAGTGTTTACCACCACACCTAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| 3UTR TCA 72 bp | TTACTCACCCGTCCTAGTGTCCTACCCTGTGAGAAGTaGTGGAGTCAATTTGGTACATTCAGTTCCAGAGGA | + |
|
Preference number: 3 (lower is better) Translates to: LLTRPSVLPCEK*WSQFGTFSSRG Trigger: TCCTCTGGAACTGAATGTACCAAATTGACTCCATCACTTCTCACAGGGTAGGACACTAGGACGGGTGAGTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| 3UTR CCA 72 bp | GAAGCAGACAAACTGCCTACTTTAAAGCTTTCTTTCTaGCTAGGTGTGGTGGTAAACACTGTACCCTCAGCA | + |
|
Preference number: 3 (lower is better) Translates to: EADKLPTLKLSF*LGVVVNTVPSA Trigger: TGCTGAGGGTACAGTGTTTACCACCACACCTAGCCAGAAAGAAAGCTTTAAAGTAGGCAGTTTGTCTGCTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| 3UTR CCA 72 bp | GGGACAGAAACAATATTTCAGAGAGTAGTCTCACCTTaGAACAGCCGTACTTATGTATGGAAGGGAAGGCTG | + |
|
Preference number: 3 (lower is better) Translates to: GTETIFQRVVSP*NSRTYVWKGRL Trigger: CAGCCTTCCCTTCCATACATAAGTACGGCTGTTCCAAGGTGAGACTACTCTCTGAAATATTGTTTCTGTCCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| 3UTR-3UTR CAA 90 bp | CAGGAGGAGACCTCATCTAAAAATAATCTAAGAGGGCCTCTTAGGCAACTGACATGCTGGGTGAGGTTTTaGACAGAAGTATCAGGATTG | + |
|
Preference number: 3 (lower is better) Translates to: QEETSSKNNLRGPLRQLTCWVRF*TEVSGL Trigger: CAATCCTGATACTTCTGTCAAAAACCTCACCCAGCA...TGTCAGTTGCCTAAGAGGCCCTCTTAGATTATTTTTAGATGAGGTCTCCTCCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| 3UTR GCA 72 bp | CTTAAAAGATCAATGAGCTACCTCCATGGTAATACATaGATGCCTTTACTGTCAGTCTTCAGGAGTCCAGAG | + |
|
Preference number: 3 (lower is better) Translates to: LKRSMSYLHGNT*MPLLSVFRSPE Trigger: CTCTGGACTCCTGAAGACTGACAGTAAAGGCATGCATGTATTACCATGGAGGTAGCTCATTGATCTTTTAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| 3UTR GCA 72 bp | AGAACTGGCCATGAGCTAGCTAGTCAAGACTTATTTTaGTGGGTGAGGTTTTTGACAGAAGTATCAGGATTG | + |
|
Preference number: 3 (lower is better) Translates to: RTGHELASQDLF*WVRFLTEVSGL Trigger: CAATCCTGATACTTCTGTCAAAAACCTCACCCAGCAAAATAAGTCTTGACTAGCTAGCTCATGGCCAGTTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| 3UTR CCA 72 bp | ACTGGCCATGAGCTAGCTAGTCAAGACTTATTTTGCTaGGTGAGGTTTTTGACAGAAGTATCAGGATTGGAT | + |
|
Preference number: 3 (lower is better) Translates to: TGHELASQDLFC*VRFLTEVSGLD Trigger: ATCCAATCCTGATACTTCTGTCAAAAACCTCACCCAGCAAAATAAGTCTTGACTAGCTAGCTCATGGCCAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| 3UTR TCA 72 bp | AAATGTTGGGAAAGGAACAGAATAAGTCAAGCATGGTaGAATAGGCCTGTAATTCCAGTACTGGAGAGACAG | + |
|
Preference number: 3 (lower is better) Translates to: KCWERNRISQAW*NRPVIPVLERQ Trigger: CTGTCTCTCCAGTACTGGAATTACAGGCCTATTTCACCATGCTTGACTTATTCTGTTCCTTTCCCAACATTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| 3UTR GCA 72 bp | TCTTTTGTTTGTTTTCTCTGTACACGTAGGTCTGCCTaGCTTGGATTTCTAAGCTCCTTAAGCAATAGCTCT | + |
|
Preference number: 3 (lower is better) Translates to: SFVCFLCTRRSA*LGFLSSLSNSS Trigger: AGAGCTATTGCTTAAGGAGCTTAGAAATCCAAGGCAGGCAGACCTACGTGTACAGAGAAAACAAACAAAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| 3UTR-3UTR CAA 90 bp | GTCCCTATTGGGATAAAAGATGGAAGGACTAACCAATTAAGGGGACAGAAACAACAAGTGATCTCTAAATaGAAGGCCAGCCTGATTTAC | + |
|
Preference number: 3 (lower is better) Translates to: VPIGIKDGRTNQLRGQKQQVISK*KASLIY Trigger: GTAAATCAGGCTGGCCTTCAATTTAGAGATCACTTG...TTGTTTCTGTCCCCTTAATTGGTTAGTCCTTCCATCTTTTATCCCAATAGGGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| 3UTR-3UTR CAA 90 bp | CATCTCCACCCCAATGTCATTGGAAGCAGACAAACTGCCTACTTTAAAGCTTTCATGACCAATAATCTATaGTTCTCTCAAGTGGCAGTT | + |
|
Preference number: 3 (lower is better) Translates to: HLHPNVIGSRQTAYFKAFMTNNL*FSQVAV Trigger: AACTGCCACTTGAGAGAACAATAGATTATTGGTCAT...GAAAGCTTTAAAGTAGGCAGTTTGTCTGCTTCCAATGACATTGGGGTGGAGATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| 3UTR TCA 72 bp | ATCATCTTTAGCTACACAAGGGATTCCAAGCCAGCCTaGGCTACATGCCAAAAATCACAAACAAATCATCTT | + |
|
Preference number: 3 (lower is better) Translates to: IIFSYTRDSKPA*ATCQKSQTNHL Trigger: AAGATGATTTGTTTGTGATTTTTGGCATGTAGCTCAGGCTGGCTTGGAATCCCTTGTGTAGCTAAAGATGAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| 3UTR TCA 72 bp | AAGCATGCTGTTGTATTTGATTCTTTACTAGTGTGTTaGCTCAGTGTTAAGTGTCTTTGTGTAAGCCAGGCA | + |
|
Preference number: 3 (lower is better) Translates to: KHAVVFDSLLVC*LSVKCLCVSQA Trigger: TGCCTGGCTTACACAAAGACACTTAACACTGAGTCAACACACTAGTAAAGAATCAAATACAACAGCATGCTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| 3UTR CCA 72 bp | ATGTTGACTTTTATATTAAATGAGCACTGGACAGAATaGATTCTAGTCAGGAAGCCTTTGCCAAAGCATAGT | + |
|
Preference number: 3 (lower is better) Translates to: MLTFILNEHWTE*ILVRKPLPKHS Trigger: ACTATGCTTTGGCAAAGGCTTCCTGACTAGAATCCATTCTGTCCAGTGCTCATTTAATATAAAAGTCAACAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| 3UTR TCA 72 bp | CAGAGTACTTGCTTAGTATGTGCTAGGTCCTGGGTTTaGTTCCAGTACTGTAAAATAGATCTATTTATATAT | + |
|
Preference number: 3 (lower is better) Translates to: QSTCLVCARSWV*FQYCKIDLFIY Trigger: ATATATAAATAGATCTATTTTACAGTACTGGAATCAAACCCAGGACCTAGCACATACTAAGCAAGTACTCTG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| 3UTR CAA 72 bp | TCCCGGAGAGGAAGCTCACTGGCAAGCCCCCACTCATaGTTCCCACACAAGCTGCTCAGAGTCAGGAGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: SRRGSSLASPHS*FPHKLLRVRSW Trigger: CCAGCTCCTGACTCTGAGCAGCTTGTGTGGGAACAATGAGTGGGGGCTTGCCAGTGAGCTTCCTCTCCGGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| CDS-3UTR GCA 90 bp | CTCACACAAAACACCTGGGGAGGTCTCCTGAAGCATTTCTCCCTAGAAGGCACAATGGCACCGTCCGAGTaGACGAAGCCCCCGTCTATA | + |
|
Preference number: 4 (lower is better) Translates to: LTQNTWGGLLKHFSLEGTMAPSE*TKPPSI Trigger: TATAGACGGGGGCTTCGTGCACTCGGACGGTGCCAT...TGTGCCTTCTAGGGAGAAATGCTTCAGGAGACCTCCCCAGGTGTTTTGTGTGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| 3UTR CAA 72 bp | CCAGCGCTTGGGAGGCAGAGACAAGTGATCTCTAAATaGAAGGCCAGCCTGATTTACAGAGCTTCAGGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: PALGRQRQVISK*KASLIYRASGQ Trigger: CTGGCCTGAAGCTCTGTAAATCAGGCTGGCCTTCAATTTAGAGATCACTTGTCTCTGCCTCCCAAGCGCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| 3UTR CAA 72 bp | CAAGGGCATGCTACGGGAGTGACCGAATGGATTCACTaGGACCATACTCCCACTCTCCGAGGAACACACAAA | + |
|
Preference number: 4 (lower is better) Translates to: QGHATGVTEWIH*DHTPTLRGTHK Trigger: TTTGTGTGTTCCTCGGAGAGTGGGAGTATGGTCCAAGTGAATCCATTCGGTCACTCCCGTAGCATGCCCTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| CDS-3UTR TCA 90 bp | CTCACACAAAACACCTGGGGAGGTCTCCTGAAGCATTTCTCCCTAGAAGGCACACCTCCAGCAACTGCATaGTCAGTTCATGGAGGGGTT | + |
|
Preference number: 4 (lower is better) Translates to: LTQNTWGGLLKHFSLEGTPPATA*SVHGGV Trigger: AACCCCTCCATGAACTGATCATGCAGTTGCTGGAGG...TGTGCCTTCTAGGGAGAAATGCTTCAGGAGACCTCCCCAGGTGTTTTGTGTGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| CDS-3UTR CCA 90 bp | GCTCTACTCACACAAAACACCTGGGGAGGTCTCCTGAAGCATTTCTCCCTAGAAATTAAGAGCATGAAGTaGGGAAAACAGCTCCCGCCA | + |
|
Preference number: 4 (lower is better) Translates to: ALLTQNTWGGLLKHFSLEIKSMK*GKQLPP Trigger: TGGCGGGAGCTGTTTTCCCCACTTCATGCTCTTAAT...TTCTAGGGAGAAATGCTTCAGGAGACCTCCCCAGGTGTTTTGTGTGAGTAGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| CDS-3UTR CCA 90 bp | TGGGTGAGGTTTTTGACAGAAGTATCAGGATTGGATAGAAGTCCTCAACAATCCCAAGGAGCTGCACATTaGCAAGCTTCGGCAGGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: WVRFLTEVSGLDRSPQQSQGAAH*QASAGK Trigger: TTTCCCTGCCGAAGCTTGCCAATGTGCAGCTCCTTG...GGATTGTTGAGGACTTCTATCCAATCCTGATACTTCTGTCAAAAACCTCACCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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| CDS-3UTR CCA 90 bp | CATCTCCACCCCAATGTCATTGGAAGCAGACAAACTGCCTACTTTAAAGCTTTCAATGATCTTGGCCTGTaGCTGCCGCGTGTTTATAAG | + |
|
Preference number: 4 (lower is better) Translates to: HLHPNVIGSRQTAYFKAFNDLGL*LPRVYK Trigger: CTTATAAACACGCGGCAGCCACAGGCCAAGATCATT...GAAAGCTTTAAAGTAGGCAGTTTGTCTGCTTCCAATGACATTGGGGTGGAGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| 3UTR CAA 72 bp | GGGGACAGAAACAATATTTCAGAGAGTAGTCTCACCTaGGAACAGCCGTACTTATGTATGGAAGGGAAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: GDRNNISESSLT*EQPYLCMEGKA Trigger: AGCCTTCCCTTCCATACATAAGTACGGCTGTTCCAAGGTGAGACTACTCTCTGAAATATTGTTTCTGTCCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| CDS-3UTR GCA 90 bp | CAGGAGGAGACCTCATCTAAAAATAATCTAAGAGGGCCTCTTAGGCAACTGACAAGCCTCAATCCCACCTaGTACTTCTTCTGCTGTATT | + |
|
Preference number: 4 (lower is better) Translates to: QEETSSKNNLRGPLRQLTSLNPT*YFFCCI Trigger: AATACAGCAGAAGAAGTAGCAGGTGGGATTGAGGCT...TGTCAGTTGCCTAAGAGGCCCTCTTAGATTATTTTTAGATGAGGTCTCCTCCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| 3UTR CAA 72 bp | CTAGTGTCCTACCCTGTGAGAAGTGATGGAGTCAATTaGGTACATTCAGTTCCAGAGGACATAAGACGACAA | + |
|
Preference number: 4 (lower is better) Translates to: LVSYPVRSDGVN*VHSVPEDIRRQ Trigger: TTGTCGTCTTATGTCCTCTGGAACTGAATGTACCAAATTGACTCCATCACTTCTCACAGGGTAGGACACTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| CDS-3UTR GCA 90 bp | GTCCCTATTGGGATAAAAGATGGAAGGACTAACCAATTAAGGGGACAGAAACAACGCCATATCTCGTACTaGTGCATTAGCTGTACCATG | + |
|
Preference number: 4 (lower is better) Translates to: VPIGIKDGRTNQLRGQKQRHISY*CISCTM Trigger: CATGGTACAGCTAATGCAGCAGTACGAGATATGGCG...TTGTTTCTGTCCCCTTAATTGGTTAGTCCTTCCATCTTTTATCCCAATAGGGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| CDS-3UTR GCA 90 bp | ACTTCTATCTTTCTCAGTCAGGTGCAGGTCTCAGCACAAACCAACAATAGCTCCACCTGCTACTTCTTCTaGTGTATTTTCGTGGTTGTT | + |
|
Preference number: 4 (lower is better) Translates to: TSIFLSQVQVSAQTNNSSTCYFF*CIFVVV Trigger: AACAACCACGAAAATACAGCAGAAGAAGTAGCAGGT...GGAGCTATTGTTGGTTTGTGCTGAGACCTGCACCTGACTGAGAAAGATAGAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| CDS-3UTR CCA 90 bp | CATCTCCACCCCAATGTCATTGGAAGCAGACAAACTGCCTACTTTAAAGCTTTCGAAGCTGGTTCACCTTaGCATTCTTTTGTCTTAAAG | + |
|
Preference number: 4 (lower is better) Translates to: HLHPNVIGSRQTAYFKAFEAGSP*HSFVLK Trigger: CTTTAAGACAAAAGAATGCCAAGGTGAACCAGCTTC...GAAAGCTTTAAAGTAGGCAGTTTGTCTGCTTCCAATGACATTGGGGTGGAGATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| 3UTR CAA 72 bp | CTAGCTAGTCAAGACTTATTTTGCTGGGTGAGGTTTTaGACAGAAGTATCAGGATTGGATAGAAGTCCTCAA | + |
|
Preference number: 4 (lower is better) Translates to: LASQDLFCWVRF*TEVSGLDRSPQ Trigger: TTGAGGACTTCTATCCAATCCTGATACTTCTGTCAAAAACCTCACCCAGCAAAATAAGTCTTGACTAGCTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| CDS-3UTR CAA 90 bp | TCCCTCCGCTTGGGAGACATGGGCAATGAGGCTCCGTCCAAGGTTCACATCCTATCAAGGAGCTGCACATaGGCAAGCTTCGGCAGGGAA | + |
|
Preference number: 5 (lower is better) Translates to: SLRLGDMGNEAPSKVHILSRSCT*ASFGRE Trigger: TTCCCTGCCGAAGCTTGCCAATGTGCAGCTCCTTGA...TAGGATGTGAACCTTGGACGGAGCCTCATTGCCCATGTCTCCCAAGCGGAGGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| CDS-3UTR CAA 90 bp | CAGGAGGAGACCTCATCTAAAAATAATCTAAGAGGGCCTCTTAGGCAACTGACACCCAGCACAATGATCTaGGCCTGTGGCTGCCGCGTG | + |
|
Preference number: 5 (lower is better) Translates to: QEETSSKNNLRGPLRQLTPSTMI*ACGCRV Trigger: CACGCGGCAGCCACAGGCCAAGATCATTGTGCTGGG...TGTCAGTTGCCTAAGAGGCCCTCTTAGATTATTTTTAGATGAGGTCTCCTCCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
||
| CDS-3UTR CAA 90 bp | CTCACACAAAACACCTGGGGAGGTCTCCTGAAGCATTTCTCCCTAGAAGGCACACCGCGTGTTTATAAGTaGTACAATAGCCTCAATCCC | + |
|
Preference number: 5 (lower is better) Translates to: LTQNTWGGLLKHFSLEGTPRVYK*YNSLNP Trigger: GGGATTGAGGCTATTGTACAACTTATAAACACGCGG...TGTGCCTTCTAGGGAGAAATGCTTCAGGAGACCTCCCCAGGTGTTTTGTGTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172450.3 |
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