RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PACSIN1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040276

Ensembl transcript IDs: ENSMUST00000045896.11, ENSMUST00000097360.3, ENSMUST00000114872.9, ENSMUST00000114873.8, ENSMUST00000231236.2, ENSMUST00000231669.2, ENSMUST00000232437.2

Found 314 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CACGGCACGTCTCGGAGTTTCACAAGTGTCGGAACTAATGATGTCTaGAAGCCTAGGGCGGCAGACGCAGTGGCGGCGGTGGTGGGGGTG +
Preference number: 1 (lower is better)
Translates to: HGTSRSFTSVGTNDV*KPRAADAVAAVVGV
Trigger: CACCCCCACCACCGCCGCCACTGCGTCTGCCGCCCTAGGCTTTCAGACATCATTAGTTCCGACACTTGTGAAACTCCGAGACGTGCCGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR GCA 90 bp GGGACAGGAGAGTTTAGGAAGCCAGGCTCAGGTGACATGGGCAGCTaGTGGCAGCTGTGGTGGGATAGGAGAGCGAGACAGGGTAGAAGG +
Preference number: 1 (lower is better)
Translates to: GTGEFRKPGSGDMGS*WQLWWDRRARQGRR
Trigger: CCTTCTACCCTGTCTCGCTCTCCTATCCCACCACAGCTGCCAGCAGCTGCCCATGTCACCTGAGCCTGGCTTCCTAAACTCTCCTGTCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR TCA 90 bp TGTCTCTTGAGTGCTAAGTTCCTGCTCCTGGCCCTGAGGGAGGACTaGCCCAACAGAAGGCCCTGCTGCAGCCTAGTCAAGAGAAGGGGG +
Preference number: 1 (lower is better)
Translates to: CLLSAKFLLLALRED*PNRRPCCSLVKRRG
Trigger: CCCCCTTCTCTTGACTAGGCTGCAGCAGGGCCTTCTGTTGGGTCAGTCCTCCCTCAGGGCCAGGAGCAGGAACTTAGCACTCAAGAGACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR GCA 90 bp AGGGGGATGGGTGGCCAATGCCTCCTCCCCAGAGTGAGAGGAGGTTaGTACTGTTGCTGGCTTTGCCCTGGACTTTCCAAGGAAGAGGCT +
Preference number: 1 (lower is better)
Translates to: RGMGGQCLLPRVRGG*YCCWLCPGLSKEEA
Trigger: AGCCTCTTCCTTGGAAAGTCCAGGGCAAAGCCAGCAACAGTAGCAACCTCCTCTCACTCTGGGGAGGAGGCATTGGCCACCCATCCCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR CCA 90 bp AGGAAGCCAGGCTCAGGTGACATGGGCAGCTGCTGGCAGCTGTGGTaGGATAGGAGAGCGAGACAGGGTAGAAGGATCCAGAAGATCTCC +
Preference number: 1 (lower is better)
Translates to: RKPGSGDMGSCWQLW*DRRARQGRRIQKIS
Trigger: GGAGATCTTCTGGATCCTTCTACCCTGTCTCGCTCTCCTATCCCACCACAGCTGCCAGCAGCTGCCCATGTCACCTGAGCCTGGCTTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR TCA 90 bp ATGGATGGTGGTCCTGTTCTTTCCCTGGAGGCCCAAAAGGTCACCTaGTTCACAAGGCAGAGGGTGTCCGTAGGCCAGAGGCCTAGCGGA +
Preference number: 1 (lower is better)
Translates to: MDGGPVLSLEAQKVT*FTRQRVSVGQRPSG
Trigger: TCCGCTAGGCCTCTGGCCTACGGACACCCTCTGCCTTGTGAATCAGGTGACCTTTTGGGCCTCCAGGGAAAGAACAGGACCACCATCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR CCA 90 bp ACAGGAGAGTTTAGGAAGCCAGGCTCAGGTGACATGGGCAGCTGCTaGCAGCTGTGGTGGGATAGGAGAGCGAGACAGGGTAGAAGGATC +
Preference number: 1 (lower is better)
Translates to: TGEFRKPGSGDMGSC*QLWWDRRARQGRRI
Trigger: GATCCTTCTACCCTGTCTCGCTCTCCTATCCCACCACAGCTGCCAGCAGCTGCCCATGTCACCTGAGCCTGGCTTCCTAAACTCTCCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR CCA 90 bp GGCCAATGCCTCCTCCCCAGAGTGAGAGGAGGTTGCTACTGTTGCTaGCTTTGCCCTGGACTTTCCAAGGAAGAGGCTTTGCCCATTGCC +
Preference number: 1 (lower is better)
Translates to: GQCLLPRVRGGCYCC*LCPGLSKEEALPIA
Trigger: GGCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGCCAGCAACAGTAGCAACCTCCTCTCACTCTGGGGAGGAGGCATTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR GCA 90 bp TGCCTCCTCCCCAGAGTGAGAGGAGGTTGCTACTGTTGCTGGCTTTaGCCTGGACTTTCCAAGGAAGAGGCTTTGCCCATTGCCAAGGAC +
Preference number: 1 (lower is better)
Translates to: CLLPRVRGGCYCCWL*PGLSKEEALPIAKD
Trigger: GTCCTTGGCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGCCAGCAACAGTAGCAACCTCCTCTCACTCTGGGGAGGAGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR CCA 90 bp TTTAGGAAGCCAGGCTCAGGTGACATGGGCAGCTGCTGGCAGCTGTaGTGGGATAGGAGAGCGAGACAGGGTAGAAGGATCCAGAAGATC +
Preference number: 1 (lower is better)
Translates to: FRKPGSGDMGSCWQL*WDRRARQGRRIQKI
Trigger: GATCTTCTGGATCCTTCTACCCTGTCTCGCTCTCCTATCCCACCACAGCTGCCAGCAGCTGCCCATGTCACCTGAGCCTGGCTTCCTAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR TCA 90 bp AGGACTAAAGAGACAGGTAGGGTCTCTGCAAATGCTCATTGGCTCTaGGGAGGAGCCCTCTGCCCACAGGCCCAGCTAGGGTTTTCATCC +
Preference number: 1 (lower is better)
Translates to: RTKETGRVSANAHWL*GGALCPQAQLGFSS
Trigger: GGATGAAAACCCTAGCTGGGCCTGTGGGCAGAGGGCTCCTCCTCAGAGCCAATGAGCATTTGCAGAGACCCTACCTGTCTCTTTAGTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR CCA 90 bp GAGTGTCAGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAACATaGATGGTGGTCCTGTTCTTTCCCTGGAGGCCCAAAAGGTCACCT +
Preference number: 1 (lower is better)
Translates to: ECQEKQQRAKGSRRT*MVVLFFPWRPKRSP
Trigger: AGGTGACCTTTTGGGCCTCCAGGGAAAGAACAGGACCACCATCCATGTTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCTGACACTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR CCA 90 bp TCAAAATGGGCTTGGCATTGGGAGTGTTGGCACAGCCTGGTCAGATaGTCTGTTCTCCTTCTTCCTCTCCTGTATGCCAGGGAGGCCATG +
Preference number: 1 (lower is better)
Translates to: SKWAWHWECWHSLVR*SVLLLPLLYAREAM
Trigger: CATGGCCTCCCTGGCATACAGGAGAGGAAGAAGGAGAACAGACCATCTGACCAGGCTGTGCCAACACTCCCAATGCCAAGCCCATTTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR CCA 90 bp CCTCCCCAGAGTGAGAGGAGGTTGCTACTGTTGCTGGCTTTGCCCTaGACTTTCCAAGGAAGAGGCTTTGCCCATTGCCAAGGACTAAAG +
Preference number: 1 (lower is better)
Translates to: PPQSERRLLLLLALP*TFQGRGFAHCQGLK
Trigger: CTTTAGTCCTTGGCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGCCAGCAACAGTAGCAACCTCCTCTCACTCTGGGGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR TCA 90 bp CCTCAAGACTCAGGAGACTCTTTGGTGGACTCTATAGACCAGATGTaGCATTGGGTTAAGTCCCAAGATCCTTGCCCACGCTGTGGGGGA +
Preference number: 1 (lower is better)
Translates to: PQDSGDSLVDSIDQM*HWVKSQDPCPRCGG
Trigger: TCCCCCACAGCGTGGGCAAGGATCTTGGGACTTAACCCAATGTCACATCTGGTCTATAGAGTCCACCAAAGAGTCTCCTGAGTCTTGAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR GCA 90 bp GCTACTGTTGCTGGCTTTGCCCTGGACTTTCCAAGGAAGAGGCTTTaGCCATTGCCAAGGACTAAAGAGACAGGTAGGGTCTCTGCAAAT +
Preference number: 1 (lower is better)
Translates to: ATVAGFALDFPRKRL*PLPRTKETGRVSAN
Trigger: ATTTGCAGAGACCCTACCTGTCTCTTTAGTCCTTGGCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGCCAGCAACAGTAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR GCA 90 bp TGTGCCGGGTATGGAAACACAACTTCCTCACCCATCAGACAAGAGTaGTACCAATGGACCAAACATCCAGTCTTAGAACCAGGAGTCTGG +
Preference number: 1 (lower is better)
Translates to: CAGYGNTTSSPIRQE*YQWTKHPVLEPGVW
Trigger: CCAGACTCCTGGTTCTAAGACTGGATGTTTGGTCCATTGGTAGCACTCTTGTCTGATGGGTGAGGAAGTTGTGTTTCCATACCCGGCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232437.2
3UTR CCA 90 bp GAGTGCTACCAATGGACCAAACATCCAGTCTTAGAACCAGGAGTCTaGGGTTTTAAACGTCTGACTCTCCTGGTCAATGCTATGAGAGTC +
Preference number: 1 (lower is better)
Translates to: ECYQWTKHPVLEPGV*GFKRLTLLVNAMRV
Trigger: GACTCTCATAGCATTGACCAGGAGAGTCAGACGTTTAAAACCCCAGACTCCTGGTTCTAAGACTGGATGTTTGGTCCATTGGTAGCACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232437.2
3UTR CCA 90 bp TATGGAAACACAACTTCCTCACCCATCAGACAAGAGTGCTACCAATaGACCAAACATCCAGTCTTAGAACCAGGAGTCTGGGGTTTTAAA +
Preference number: 1 (lower is better)
Translates to: YGNTTSSPIRQECYQ*TKHPVLEPGVWGFK
Trigger: TTTAAAACCCCAGACTCCTGGTTCTAAGACTGGATGTTTGGTCCATTGGTAGCACTCTTGTCTGATGGGTGAGGAAGTTGTGTTTCCATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232437.2
3UTR-3UTR TCA 90 bp GGAAATGGCGGGAAGGGGTGTGGTCCAGCCCAAGGTTTGAGGTGCCCTAACACCTCCTGCTTCCGGTTCTaGGGGCTCCAGGGCCCAACC +
Preference number: 2 (lower is better)
Translates to: GNGGKGCGPAQGLRCPNTSCFRF*GLQGPT
Trigger: GGTTGGGCCCTGGAGCCCTCAGAACCGGAAGCAGGA...GGTGTTAGGGCACCTCAAACCTTGGGCTGGACCACACCCCTTCCCGCCATTTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR TCA 90 bp TCCTCCCAAGGGAGAGCCTGCCACCTGCTTCCCAACCACAAGGGCCCTGTGTCCCCTAGGTTGGCCAGGTaGGAGCCTTGTAGACCGTCT +
Preference number: 2 (lower is better)
Translates to: SSQGRACHLLPNHKGPVSPRLAR*EPCRPS
Trigger: AGACGGTCTACAAGGCTCTCACCTGGCCAACCTAGG...GGACACAGGGCCCTTGTGGTTGGGAAGCAGGTGGCAGGCTCTCCCTTGGGAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR GCA 90 bp GAGGACCCTCCTGCACTGGGGGTGCTGAATAACTTGAGGACCAAGTCTGGTCCCGTGTGGGGGTGGGGGTaGTGCCAGCATTCAGAGGGG +
Preference number: 2 (lower is better)
Translates to: EDPPALGVLNNLRTKSGPVWGWG*CQHSEG
Trigger: CCCCTCTGAATGCTGGCAGCACCCCCACCCCCACAC...GGGACCAGACTTGGTCCTCAAGTTATTCAGCACCCCCAGTGCAGGAGGGTCCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp TCCTCCCAAGGGAGAGCCTGCCACCTGCTTCCCAACCACAAGGGCCCTGTGTCCACCAGCCTGAGCTGCTaGCTTCCCCTTACAGTGCCA +
Preference number: 2 (lower is better)
Translates to: SSQGRACHLLPNHKGPVSTSLSC*LPLTVP
Trigger: TGGCACTGTAAGGGGAAGCCAGCAGCTCAGGCTGGT...GGACACAGGGCCCTTGTGGTTGGGAAGCAGGTGGCAGGCTCTCCCTTGGGAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp AGCTCCTCCTGGAACCAGGTCGCTGGATGGCGGTTAACTGGGGACAAAACACATGGTGGGCCTGGGGTCTaGTCAGGGCCACAGCCCCTC +
Preference number: 2 (lower is better)
Translates to: SSSWNQVAGWRLTGDKTHGGPGV*SGPQPL
Trigger: GAGGGGCTGTGGCCCTGACCAGACCCCAGGCCCACC...ATGTGTTTTGTCCCCAGTTAACCGCCATCCAGCGACCTGGTTCCAGGAGGAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR TCA 90 bp AACACATCACTGACCGAGCCCTGCAGGGTCCCGTGCAGCATCAAGAGGCCCCTGAATGCTCATTGGCTCTaGGGAGGAGCCCTCTGCCCA +
Preference number: 2 (lower is better)
Translates to: NTSLTEPCRVPCSIKRPLNAHWL*GGALCP
Trigger: TGGGCAGAGGGCTCCTCCTCAGAGCCAATGAGCATT...CAGGGGCCTCTTGATGCTGCACGGGACCCTGCAGGGCTCGGTCAGTGATGTGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR TCA 90 bp CAGGTAGGGGTCTGGAAATGGCGGGAAGGGGTGTGGTCCAGCCCAAGGTTTGAGAACCTGGGCTGCAGCTaGAGCCCCAAGGGCAAACAG +
Preference number: 2 (lower is better)
Translates to: QVGVWKWREGVWSSPRFENLGCS*SPKGKQ
Trigger: CTGTTTGCCCTTGGGGCTTCAGCTGCAGCCCAGGTT...CTCAAACCTTGGGCTGGACCACACCCCTTCCCGCCATTTCCAGACCCCTACCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR GCA 90 bp GGAAATGGCGGGAAGGGGTGTGGTCCAGCCCAAGGTTTGAGGTGCCCTAACACCGGTGACATGGGCAGCTaGTGGCAGCTGTGGTGGGAT +
Preference number: 2 (lower is better)
Translates to: GNGGKGCGPAQGLRCPNTGDMGS*WQLWWD
Trigger: ATCCCACCACAGCTGCCAGCAGCTGCCCATGTCACC...GGTGTTAGGGCACCTCAAACCTTGGGCTGGACCACACCCCTTCCCGCCATTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR GCA 90 bp AACACATCACTGACCGAGCCCTGCAGGGTCCCGTGCAGCATCAAGAGGCCCCTGCACACCAGCCTGAGCTaGTGGCTTCCCCTTACAGTG +
Preference number: 2 (lower is better)
Translates to: NTSLTEPCRVPCSIKRPLHTSLS*WLPLTV
Trigger: CACTGTAAGGGGAAGCCAGCAGCTCAGGCTGGTGTG...CAGGGGCCTCTTGATGCTGCACGGGACCCTGCAGGGCTCGGTCAGTGATGTGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR GCA 90 bp AGCTCCTCCTGGAACCAGGTCGCTGGATGGCGGTTAACTGGGGACAAAACACATCAGCCCCTCCCCAGGTaGTGGGAAGCCGCTGGCACA +
Preference number: 2 (lower is better)
Translates to: SSSWNQVAGWRLTGDKTHQPLPR*WEAAGT
Trigger: TGTGCCAGCGGCTTCCCAGCACCTGGGGAGGGGCTG...ATGTGTTTTGTCCCCAGTTAACCGCCATCCAGCGACCTGGTTCCAGGAGGAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp TCCTCCCAAGGGAGAGCCTGCCACCTGCTTCCCAACCACAAGGGCCCTGTGTCCTGGCATTGGGAGTGTTaGCACAGCCTGGTCAGATGG +
Preference number: 2 (lower is better)
Translates to: SSQGRACHLLPNHKGPVSWHWEC*HSLVRW
Trigger: CCATCTGACCAGGCTGTGCCAACACTCCCAATGCCA...GGACACAGGGCCCTTGTGGTTGGGAAGCAGGTGGCAGGCTCTCCCTTGGGAGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR TCA 90 bp TGGGCTGCAGCTGAAGCCCCAAGGGCAAACAGTGACAGGGAAGTGGGTGCTTACTCATGTCTGGGGGAGTaGAGAGACACTCCCCTCCCC +
Preference number: 2 (lower is better)
Translates to: WAAAEAPRANSDREVGAYSCLGE*RDTPLP
Trigger: GGGGAGGGGAGTGTCTCTTCACTCCCCCAGACATGA...GTAAGCACCCACTTCCCTGTCACTGTTTGCCCTTGGGGCTTCAGCTGCAGCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR TCA 90 bp CAAGGTTTGAGGTGCCCTAACACCAGGAATCACAGGTGGGGCTCTGCTCCGGGCGGGCTGTGGCGTTTCTaGATGACCATGAAGGGAGGG +
Preference number: 2 (lower is better)
Translates to: QGLRCPNTRNHRWGSAPGGLWRF*MTMKGG
Trigger: CCCTCCCTTCATGGTCATTCAGAAACGCCACAGCCC...GCCCGGAGCAGAGCCCCACCTGTGATTCCTGGTGTTAGGGCACCTCAAACCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR TCA 90 bp GGAAATGGCGGGAAGGGGTGTGGTCCAGCCCAAGGTTTGAGGTGCCCTAACACCGGGCTGTGGCGTTTCTaGATGACCATGAAGGGAGGG +
Preference number: 2 (lower is better)
Translates to: GNGGKGCGPAQGLRCPNTGLWRF*MTMKGG
Trigger: CCCTCCCTTCATGGTCATTCAGAAACGCCACAGCCC...GGTGTTAGGGCACCTCAAACCTTGGGCTGGACCACACCCCTTCCCGCCATTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR GCA 90 bp CTCCTGTATGCCAGGGAGGCCATGACTCCCTCCCACTCACCTGCCTTCATGTCTGGTGACATGGGCAGCTaGTGGCAGCTGTGGTGGGAT +
Preference number: 2 (lower is better)
Translates to: LLYAREAMTPSHSPAFMSGDMGS*WQLWWD
Trigger: ATCCCACCACAGCTGCCAGCAGCTGCCCATGTCACC...AGACATGAAGGCAGGTGAGTGGGAGGGAGTCATGGCCTCCCTGGCATACAGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR GCA 90 bp CAGGTAGGGGTCTGGAAATGGCGGGAAGGGGTGTGGTCCAGCCCAAGGTTTGAGTCCCTCCCACTCACCTaGCTTCATGTCTGGGGGAGT +
Preference number: 2 (lower is better)
Translates to: QVGVWKWREGVWSSPRFESLPLT*LHVWGS
Trigger: ACTCCCCCAGACATGAAGGCAGGTGAGTGGGAGGGA...CTCAAACCTTGGGCTGGACCACACCCCTTCCCGCCATTTCCAGACCCCTACCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp TCCTCCCAAGGGAGAGCCTGCCACCTGCTTCCCAACCACAAGGGCCCTGTGTCCGGTTGCTACTGTTGCTaGCTTTGCCCTGGACTTTCC +
Preference number: 2 (lower is better)
Translates to: SSQGRACHLLPNHKGPVSGCYCC*LCPGLS
Trigger: GGAAAGTCCAGGGCAAAGCCAGCAACAGTAGCAACC...GGACACAGGGCCCTTGTGGTTGGGAAGCAGGTGGCAGGCTCTCCCTTGGGAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp TGGGCTGCAGCTGAAGCCCCAAGGGCAAACAGTGACAGGGAAGTGGGTGCTTACATGAAGGGAGGGGGATaGGTGGCCAATGCCTCCTCC +
Preference number: 2 (lower is better)
Translates to: WAAAEAPRANSDREVGAYMKGGG*VANASS
Trigger: GGAGGAGGCATTGGCCACCCATCCCCCTCCCTTCAT...GTAAGCACCCACTTCCCTGTCACTGTTTGCCCTTGGGGCTTCAGCTGCAGCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR TCA 90 bp GGCACAGCCTGGTCAGATGGTCTGTTCTCCTTCTTCCTCTCCTGTATGCCAGGGTCATGTCTGGGGGAGTaGAGAGACACTCCCCTCCCC +
Preference number: 2 (lower is better)
Translates to: GTAWSDGLFSFFLSCMPGSCLGE*RDTPLP
Trigger: GGGGAGGGGAGTGTCTCTTCACTCCCCCAGACATGA...CCCTGGCATACAGGAGAGGAAGAAGGAGAACAGACCATCTGACCAGGCTGTGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR TCA 90 bp AGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAACATGGATGGTGGTCCTGTATGCCAGGGAGGCCATaGCTCCCTCCCACTCACCTG +
Preference number: 2 (lower is better)
Translates to: RRSSRELKGPGEHGWWSCMPGRP*LPPTHL
Trigger: CAGGTGAGTGGGAGGGAGTCATGGCCTCCCTGGCAT...ACAGGACCACCATCCATGTTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR TCA 90 bp GAGGACCCTCCTGCACTGGGGGTGCTGAATAACTTGAGGACCAAGTCTGGTCCCGCCTCCTCCCCAGAGTaGGAGGAGGTTGCTACTGTT +
Preference number: 2 (lower is better)
Translates to: EDPPALGVLNNLRTKSGPASSPE*EEVATV
Trigger: AACAGTAGCAACCTCCTCTCACTCTGGGGAGGAGGC...GGGACCAGACTTGGTCCTCAAGTTATTCAGCACCCCCAGTGCAGGAGGGTCCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR TCA 90 bp CAGGTAGGGGTCTGGAAATGGCGGGAAGGGGTGTGGTCCAGCCCAAGGTTTGAGGGAGAAGGGGAGGTTTaGATCCTGCTTCCGGTTCTG +
Preference number: 2 (lower is better)
Translates to: QVGVWKWREGVWSSPRFEGEGEV*ILLPVL
Trigger: CAGAACCGGAAGCAGGATTCAAACCTCCCCTTCTCC...CTCAAACCTTGGGCTGGACCACACCCCTTCCCGCCATTTCCAGACCCCTACCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR GCA 90 bp AACACATCACTGACCGAGCCCTGCAGGGTCCCGTGCAGCATCAAGAGGCCCCTGGGAGGTTGCTACTGTTaGTGGCTTTGCCCTGGACTT +
Preference number: 2 (lower is better)
Translates to: NTSLTEPCRVPCSIKRPLGGCYC*WLCPGL
Trigger: AAGTCCAGGGCAAAGCCAGCAACAGTAGCAACCTCC...CAGGGGCCTCTTGATGCTGCACGGGACCCTGCAGGGCTCGGTCAGTGATGTGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp CAAGGTTTGAGGTGCCCTAACACCAGGAATCACAGGTGGGGCTCTGCTCCGGGCAAGGGTGGAAGGCGGTaGACAAGGACTGAGAGGAGT +
Preference number: 2 (lower is better)
Translates to: QGLRCPNTRNHRWGSAPGKGGRR*TRTERS
Trigger: ACTCCTCTCAGTCCTTGTCCACCGCCTTCCACCCTT...GCCCGGAGCAGAGCCCCACCTGTGATTCCTGGTGTTAGGGCACCTCAAACCTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp TGCTTACAGCCCTGTCTCTTGAGTGCTAAGTTCCTGCTCCTGGCCCTGAGGGAGGACATGGGCAGCTGCTaGCAGCTGTGGTGGGATAGG +
Preference number: 2 (lower is better)
Translates to: CLQPCLLSAKFLLLALREDMGSC*QLWWDR
Trigger: CCTATCCCACCACAGCTGCCAGCAGCTGCCCATGTC...CTCCCTCAGGGCCAGGAGCAGGAACTTAGCACTCAAGAGACAGGGCTGTAAGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp TGGGCTGCAGCTGAAGCCCCAAGGGCAAACAGTGACAGGGAAGTGGGTGCTTACCTTACAGTGCCAAGGTaGAGGTTCCCCAAGCCCCTG +
Preference number: 2 (lower is better)
Translates to: WAAAEAPRANSDREVGAYLTVPR*RFPKPL
Trigger: CAGGGGCTTGGGGAACCTCCACCTTGGCACTGTAAG...GTAAGCACCCACTTCCCTGTCACTGTTTGCCCTTGGGGCTTCAGCTGCAGCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR CAA 90 bp GGGTGGCCAATGCCTCCTCCCCAGAGTGAGAGGAGGTTGCTACTGTaGCTGGCTTTGCCCTGGACTTTCCAAGGAAGAGGCTTTGCCCAT +
Preference number: 2 (lower is better)
Translates to: GWPMPPPQSERRLLL*LALPWTFQGRGFAH
Trigger: ATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGCCAGCAACAGTAGCAACCTCCTCTCACTCTGGGGAGGAGGCATTGGCCACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR TCA 90 bp AGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAACATGGATGGTGGTCCTGTTCATGTCTGGGGGAGTaGAGAGACACTCCCCTCCCC +
Preference number: 2 (lower is better)
Translates to: RRSSRELKGPGEHGWWSCSCLGE*RDTPLP
Trigger: GGGGAGGGGAGTGTCTCTTCACTCCCCCAGACATGA...ACAGGACCACCATCCATGTTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR TCA 90 bp TTGCTGGCTTTGCCCTGGACTTTCCAAGGAAGAGGCTTTGCCCATTGCCAAGGAATGCCAGGGAGGCCATaGCTCCCTCCCACTCACCTG +
Preference number: 2 (lower is better)
Translates to: LLALPWTFQGRGFAHCQGMPGRP*LPPTHL
Trigger: CAGGTGAGTGGGAGGGAGTCATGGCCTCCCTGGCAT...TCCTTGGCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGCCAGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR GCA 90 bp TGGGCTGCAGCTGAAGCCCCAAGGGCAAACAGTGACAGGGAAGTGGGTGCTTACTCTTCCTCTCCTGTATaGCAGGGAGGCCATGACTCC +
Preference number: 2 (lower is better)
Translates to: WAAAEAPRANSDREVGAYSSSPV*QGGHDS
Trigger: GGAGTCATGGCCTCCCTGGCATACAGGAGAGGAAGA...GTAAGCACCCACTTCCCTGTCACTGTTTGCCCTTGGGGCTTCAGCTGCAGCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR GCA 90 bp AGCTCCTCCTGGAACCAGGTCGCTGGATGGCGGTTAACTGGGGACAAAACACATGGGATGGGTGGCCAATaGCTCCTCCCCAGAGTGAGA +
Preference number: 2 (lower is better)
Translates to: SSSWNQVAGWRLTGDKTHGMGGQ*LLPRVR
Trigger: TCTCACTCTGGGGAGGAGGCATTGGCCACCCATCCC...ATGTGTTTTGTCCCCAGTTAACCGCCATCCAGCGACCTGGTTCCAGGAGGAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR GCA 90 bp CAAGGTTTGAGGTGCCCTAACACCAGGAATCACAGGTGGGGCTCTGCTCCGGGCAACAGAAGGCCCTGCTaGAGCCTAGTCAAGAGAAGG +
Preference number: 2 (lower is better)
Translates to: QGLRCPNTRNHRWGSAPGNRRPC*SLVKRR
Trigger: CCTTCTCTTGACTAGGCTGCAGCAGGGCCTTCTGTT...GCCCGGAGCAGAGCCCCACCTGTGATTCCTGGTGTTAGGGCACCTCAAACCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp CTCCTGTATGCCAGGGAGGCCATGACTCCCTCCCACTCACCTGCCTTCATGTCTATGTCTGGAACTCTATaGCAAGGGGGAGGGGAAGGG +
Preference number: 2 (lower is better)
Translates to: LLYAREAMTPSHSPAFMSMSGTL*QGGGEG
Trigger: CCCTTCCCCTCCCCCTTGCCATAGAGTTCCAGACAT...AGACATGAAGGCAGGTGAGTGGGAGGGAGTCATGGCCTCCCTGGCATACAGGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp GACCCCAAAGCTTGGGTCCATGACCTGAGTGTCAGGAGAAGCAGCAGAGAGCTAGACATGGGCAGCTGCTaGCAGCTGTGGTGGGATAGG +
Preference number: 2 (lower is better)
Translates to: DPKAWVHDLSVRRSSRELDMGSC*QLWWDR
Trigger: CCTATCCCACCACAGCTGCCAGCAGCTGCCCATGTC...TAGCTCTCTGCTGCTTCTCCTGACACTCAGGTCATGGACCCAAGCTTTGGGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp CTCCTGTATGCCAGGGAGGCCATGACTCCCTCCCACTCACCTGCCTTCATGTCTACCCCCAGGGCAGAGTaGAAGACTAAAGATTGGGGG +
Preference number: 2 (lower is better)
Translates to: LLYAREAMTPSHSPAFMSTPRAE*KTKDWG
Trigger: CCCCCAATCTTTAGTCTTCCACTCTGCCCTGGGGGT...AGACATGAAGGCAGGTGAGTGGGAGGGAGTCATGGCCTCCCTGGCATACAGGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp CAGGTAGGGGTCTGGAAATGGCGGGAAGGGGTGTGGTCCAGCCCAAGGTTTGAGACCTGCCTTCATGTCTaGGGGAGTGAAGAGACACTC +
Preference number: 2 (lower is better)
Translates to: QVGVWKWREGVWSSPRFETCLHV*GSEETL
Trigger: GAGTGTCTCTTCACTCCCCCAGACATGAAGGCAGGT...CTCAAACCTTGGGCTGGACCACACCCCTTCCCGCCATTTCCAGACCCCTACCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp AAGAGGTCTTGGTTGACCTGTTTCGTTTCCCACCCCATCCTCCCAAGGGAGAGCATGAAGGGAGGGGGATaGGTGGCCAATGCCTCCTCC +
Preference number: 2 (lower is better)
Translates to: KRSWLTCFVSHPILPRESMKGGG*VANASS
Trigger: GGAGGAGGCATTGGCCACCCATCCCCCTCCCTTCAT...GCTCTCCCTTGGGAGGATGGGGTGGGAAACGAAACAGGTCAACCAAGACCTCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR TCA 90 bp AAGAGGTCTTGGTTGACCTGTTTCGTTTCCCACCCCATCCTCCCAAGGGAGAGCAATGCTCATTGGCTCTaGGGAGGAGCCCTCTGCCCA +
Preference number: 2 (lower is better)
Translates to: KRSWLTCFVSHPILPRESNAHWL*GGALCP
Trigger: TGGGCAGAGGGCTCCTCCTCAGAGCCAATGAGCATT...GCTCTCCCTTGGGAGGATGGGGTGGGAAACGAAACAGGTCAACCAAGACCTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR TCA 90 bp AGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAACATGGATGGTGGTCCTGTGCCTCCTCCCCAGAGTaGGAGGAGGTTGCTACTGTT +
Preference number: 2 (lower is better)
Translates to: RRSSRELKGPGEHGWWSCASSPE*EEVATV
Trigger: AACAGTAGCAACCTCCTCTCACTCTGGGGAGGAGGC...ACAGGACCACCATCCATGTTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR TCA 90 bp GTCCATGACCTGAGTGTCAGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAAGGGCTGTGGCGTTTCTaGATGACCATGAAGGGAGGG +
Preference number: 2 (lower is better)
Translates to: VHDLSVRRSSRELKGPGEGLWRF*MTMKGG
Trigger: CCCTCCCTTCATGGTCATTCAGAAACGCCACAGCCC...TTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCTGACACTCAGGTCATGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR TCA 90 bp TGCTTACAGCCCTGTCTCTTGAGTGCTAAGTTCCTGCTCCTGGCCCTGAGGGAGCTTGGGTCCATGACCTaGGTGTCAGGAGAAGCAGCA +
Preference number: 2 (lower is better)
Translates to: CLQPCLLSAKFLLLALRELGSMT*VSGEAA
Trigger: TGCTGCTTCTCCTGACACTCAGGTCATGGACCCAAG...CTCCCTCAGGGCCAGGAGCAGGAACTTAGCACTCAAGAGACAGGGCTGTAAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR GCA 90 bp TGCTTACAGCCCTGTCTCTTGAGTGCTAAGTTCCTGCTCCTGGCCCTGAGGGAGTCTTCCTCTCCTGTATaGCAGGGAGGCCATGACTCC +
Preference number: 2 (lower is better)
Translates to: CLQPCLLSAKFLLLALRESSSPV*QGGHDS
Trigger: GGAGTCATGGCCTCCCTGGCATACAGGAGAGGAAGA...CTCCCTCAGGGCCAGGAGCAGGAACTTAGCACTCAAGAGACAGGGCTGTAAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR GCA 90 bp GTCCATGACCTGAGTGTCAGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAACACACCAGCCTGAGCTaGTGGCTTCCCCTTACAGTG +
Preference number: 2 (lower is better)
Translates to: VHDLSVRRSSRELKGPGEHTSLS*WLPLTV
Trigger: CACTGTAAGGGGAAGCCAGCAGCTCAGGCTGGTGTG...TTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCTGACACTCAGGTCATGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR GCA 90 bp GCACGTCTCGGAGTTTCACAAGTGTCGGAACTAATGATGTCTGAAAGCCTAGGGGCCCAGGCCCCAAGGTaGGGACATGGCGGCTTCTTG +
Preference number: 2 (lower is better)
Translates to: ARLGVSQVSELMMSESLGAQAPR*GHGGFL
Trigger: CAAGAAGCCGCCATGTCCGCACCTTGGGGCCTGGGC...CCCTAGGCTTTCAGACATCATTAGTTCCGACACTTGTGAAACTCCGAGACGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp TGCTTACAGCCCTGTCTCTTGAGTGCTAAGTTCCTGCTCCTGGCCCTGAGGGAGACCCCCAGGGCAGAGTaGAAGACTAAAGATTGGGGG +
Preference number: 2 (lower is better)
Translates to: CLQPCLLSAKFLLLALRETPRAE*KTKDWG
Trigger: CCCCCAATCTTTAGTCTTCCACTCTGCCCTGGGGGT...CTCCCTCAGGGCCAGGAGCAGGAACTTAGCACTCAAGAGACAGGGCTGTAAGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp GAGGACCCTCCTGCACTGGGGGTGCTGAATAACTTGAGGACCAAGTCTGGTCCCACCTGCCTTCATGTCTaGGGGAGTGAAGAGACACTC +
Preference number: 2 (lower is better)
Translates to: EDPPALGVLNNLRTKSGPTCLHV*GSEETL
Trigger: GAGTGTCTCTTCACTCCCCCAGACATGAAGGCAGGT...GGGACCAGACTTGGTCCTCAAGTTATTCAGCACCCCCAGTGCAGGAGGGTCCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp GTCCATGACCTGAGTGTCAGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAACACAGTGATTGGGGATaGGAGGGGCTGTGGCGTTTC +
Preference number: 2 (lower is better)
Translates to: VHDLSVRRSSRELKGPGEHSDWG*EGLWRF
Trigger: GAAACGCCACAGCCCCTCCCATCCCCAATCACTGTG...TTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCTGACACTCAGGTCATGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp GACCCCAAAGCTTGGGTCCATGACCTGAGTGTCAGGAGAAGCAGCAGAGAGCTACACAGTGATTGGGGATaGGAGGGGCTGTGGCGTTTC +
Preference number: 2 (lower is better)
Translates to: DPKAWVHDLSVRRSSRELHSDWG*EGLWRF
Trigger: GAAACGCCACAGCCCCTCCCATCCCCAATCACTGTG...TAGCTCTCTGCTGCTTCTCCTGACACTCAGGTCATGGACCCAAGCTTTGGGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp GGAAATGGCGGGAAGGGGTGTGGTCCAGCCCAAGGTTTGAGGTGCCCTAACACCCTGAATCTCCTAGGTTaGCCAGGTGAGAGCCTTGTA +
Preference number: 2 (lower is better)
Translates to: GNGGKGCGPAQGLRCPNTLNLLG*PGESLV
Trigger: TACAAGGCTCTCACCTGGCCAACCTAGGAGATTCAG...GGTGTTAGGGCACCTCAAACCTTGGGCTGGACCACACCCCTTCCCGCCATTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp GTCCATGACCTGAGTGTCAGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAACTTACAGTGCCAAGGTaGAGGTTCCCCAAGCCCCTG +
Preference number: 2 (lower is better)
Translates to: VHDLSVRRSSRELKGPGELTVPR*RFPKPL
Trigger: CAGGGGCTTGGGGAACCTCCACCTTGGCACTGTAAG...TTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCTGACACTCAGGTCATGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp AGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAACATGGATGGTGGTCCTGTCTTACAGTGCCAAGGTaGAGGTTCCCCAAGCCCCTG +
Preference number: 2 (lower is better)
Translates to: RRSSRELKGPGEHGWWSCLTVPR*RFPKPL
Trigger: CAGGGGCTTGGGGAACCTCCACCTTGGCACTGTAAG...ACAGGACCACCATCCATGTTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp GACCCCAAAGCTTGGGTCCATGACCTGAGTGTCAGGAGAAGCAGCAGAGAGCTAACCAGCCTGAGCTGCTaGCTTCCCCTTACAGTGCCA +
Preference number: 2 (lower is better)
Translates to: DPKAWVHDLSVRRSSRELTSLSC*LPLTVP
Trigger: TGGCACTGTAAGGGGAAGCCAGCAGCTCAGGCTGGT...TAGCTCTCTGCTGCTTCTCCTGACACTCAGGTCATGGACCCAAGCTTTGGGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp AGCTCCTCCTGGAACCAGGTCGCTGGATGGCGGTTAACTGGGGACAAAACACATGTATACTATGTGGGGTaGGCCTGGGGTCTGGTCAGG +
Preference number: 2 (lower is better)
Translates to: SSSWNQVAGWRLTGDKTHVYYVG*AWGLVR
Trigger: CCTGACCAGACCCCAGGCCCACCCCACATAGTATAC...ATGTGTTTTGTCCCCAGTTAACCGCCATCCAGCGACCTGGTTCCAGGAGGAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp CAAGGTTTGAGGTGCCCTAACACCAGGAATCACAGGTGGGGCTCTGCTCCGGGCGTTCCTGCCCCAGAGTaGGCAGCTAGTATACTATGT +
Preference number: 2 (lower is better)
Translates to: QGLRCPNTRNHRWGSAPGVPAPE*AASILC
Trigger: ACATAGTATACTAGCTGCCCACTCTGGGGCAGGAAC...GCCCGGAGCAGAGCCCCACCTGTGATTCCTGGTGTTAGGGCACCTCAAACCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR CAA 90 bp ATGCCTCCTCCCCAGAGTGAGAGGAGGTTGCTACTGTTGCTGGCTTaGCCCTGGACTTTCCAAGGAAGAGGCTTTGCCCATTGCCAAGGA +
Preference number: 2 (lower is better)
Translates to: MPPPQSERRLLLLLA*PWTFQGRGFAHCQG
Trigger: TCCTTGGCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGCCAGCAACAGTAGCAACCTCCTCTCACTCTGGGGAGGAGGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR TCA 90 bp TGGGCTGCAGCTGAAGCCCCAAGGGCAAACAGTGACAGGGAAGTGGGTGCTTACGGAAGAAAGCTACAGTaGCCATCCAGAGTTCCTTCC +
Preference number: 2 (lower is better)
Translates to: WAAAEAPRANSDREVGAYGRKLQ*PSRVPS
Trigger: GGAAGGAACTCTGGATGGTCACTGTAGCTTTCTTCC...GTAAGCACCCACTTCCCTGTCACTGTTTGCCCTTGGGGCTTCAGCTGCAGCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR TCA 90 bp AACACATCACTGACCGAGCCCTGCAGGGTCCCGTGCAGCATCAAGAGGCCCCTGCAAAGAAACAGCCTCTaGCCACTTTCCACTGTAAGA +
Preference number: 2 (lower is better)
Translates to: NTSLTEPCRVPCSIKRPLQRNSL*PLSTVR
Trigger: TCTTACAGTGGAAAGTGGTCAGAGGCTGTTTCTTTG...CAGGGGCCTCTTGATGCTGCACGGGACCCTGCAGGGCTCGGTCAGTGATGTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR GCA 90 bp GTCCATGACCTGAGTGTCAGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAAGGCCTCCAGGTAGGCTaGAAACGCTGTCTCTTCGTA +
Preference number: 2 (lower is better)
Translates to: VHDLSVRRSSRELKGPGEGLQVG*KRCLFV
Trigger: TACGAAGAGACAGCGTTTGCAGCCTACCTGGAGGCC...TTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCTGACACTCAGGTCATGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR GCA 90 bp GTCCATGACCTGAGTGTCAGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAATCTTCCTCTCCTGTATaGCAGGGAGGCCATGACTCC +
Preference number: 2 (lower is better)
Translates to: VHDLSVRRSSRELKGPGESSSPV*QGGHDS
Trigger: GGAGTCATGGCCTCCCTGGCATACAGGAGAGGAAGA...TTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCTGACACTCAGGTCATGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp AGCTCCTCCTGGAACCAGGTCGCTGGATGGCGGTTAACTGGGGACAAAACACATATGTCTGGAACTCTATaGCAAGGGGGAGGGGAAGGG +
Preference number: 2 (lower is better)
Translates to: SSSWNQVAGWRLTGDKTHMSGTL*QGGGEG
Trigger: CCCTTCCCCTCCCCCTTGCCATAGAGTTCCAGACAT...ATGTGTTTTGTCCCCAGTTAACCGCCATCCAGCGACCTGGTTCCAGGAGGAGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp GCTTTGCCCTGGACTTTCCAAGGAAGAGGCTTTGCCCATTGCCAAGGACTAAAGGACATGGGCAGCTGCTaGCAGCTGTGGTGGGATAGG +
Preference number: 2 (lower is better)
Translates to: ALPWTFQGRGFAHCQGLKDMGSC*QLWWDR
Trigger: CCTATCCCACCACAGCTGCCAGCAGCTGCCCATGTC...CTTTAGTCCTTGGCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp AGCTCCTCCTGGAACCAGGTCGCTGGATGGCGGTTAACTGGGGACAAAACACATACCCCCAGGGCAGAGTaGAAGACTAAAGATTGGGGG +
Preference number: 2 (lower is better)
Translates to: SSSWNQVAGWRLTGDKTHTPRAE*KTKDWG
Trigger: CCCCCAATCTTTAGTCTTCCACTCTGCCCTGGGGGT...ATGTGTTTTGTCCCCAGTTAACCGCCATCCAGCGACCTGGTTCCAGGAGGAGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp GGCACAGCCTGGTCAGATGGTCTGTTCTCCTTCTTCCTCTCCTGTATGCCAGGGACCTGCCTTCATGTCTaGGGGAGTGAAGAGACACTC +
Preference number: 2 (lower is better)
Translates to: GTAWSDGLFSFFLSCMPGTCLHV*GSEETL
Trigger: GAGTGTCTCTTCACTCCCCCAGACATGAAGGCAGGT...CCCTGGCATACAGGAGAGGAAGAAGGAGAACAGACCATCTGACCAGGCTGTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp GACCCCAAAGCTTGGGTCCATGACCTGAGTGTCAGGAGAAGCAGCAGAGAGCTATGGCATTGGGAGTGTTaGCACAGCCTGGTCAGATGG +
Preference number: 2 (lower is better)
Translates to: DPKAWVHDLSVRRSSRELWHWEC*HSLVRW
Trigger: CCATCTGACCAGGCTGTGCCAACACTCCCAATGCCA...TAGCTCTCTGCTGCTTCTCCTGACACTCAGGTCATGGACCCAAGCTTTGGGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp TGGGCTGCAGCTGAAGCCCCAAGGGCAAACAGTGACAGGGAAGTGGGTGCTTACCTGAATCTCCTAGGTTaGCCAGGTGAGAGCCTTGTA +
Preference number: 2 (lower is better)
Translates to: WAAAEAPRANSDREVGAYLNLLG*PGESLV
Trigger: TACAAGGCTCTCACCTGGCCAACCTAGGAGATTCAG...GTAAGCACCCACTTCCCTGTCACTGTTTGCCCTTGGGGCTTCAGCTGCAGCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp AATTACACAATCATGTATAAAACAGGTGCATTGCTGAGACCACGGCACGTCTCGGGTGGGCCTGGGGTCTaGTCAGGGCCACAGCCCCTC +
Preference number: 2 (lower is better)
Translates to: NYTIMYKTGALLRPRHVSGGPGV*SGPQPL
Trigger: GAGGGGCTGTGGCCCTGACCAGACCCCAGGCCCACC...CGAGACGTGCCGTGGTCTCAGCAATGCACCTGTTTTATACATGATTGTGTAATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp GAGGACCCTCCTGCACTGGGGGTGCTGAATAACTTGAGGACCAAGTCTGGTCCCGTTCCTGCCCCAGAGTaGGCAGCTAGTATACTATGT +
Preference number: 2 (lower is better)
Translates to: EDPPALGVLNNLRTKSGPVPAPE*AASILC
Trigger: ACATAGTATACTAGCTGCCCACTCTGGGGCAGGAAC...GGGACCAGACTTGGTCCTCAAGTTATTCAGCACCCCCAGTGCAGGAGGGTCCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp AACACATCACTGACCGAGCCCTGCAGGGTCCCGTGCAGCATCAAGAGGCCCCTGGTTGTTCAAAAGGGATaGATTTTCCAGTTCCTGCCC +
Preference number: 2 (lower is better)
Translates to: NTSLTEPCRVPCSIKRPLVVQKG*IFQFLP
Trigger: GGGCAGGAACTGGAAAATCCATCCCTTTTGAACAAC...CAGGGGCCTCTTGATGCTGCACGGGACCCTGCAGGGCTCGGTCAGTGATGTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR GCA 90 bp CCACACCCAGAATCCTTTAATGAAGACTCAAGACTCTCGGGCTTAGAGAAATGGGTGTGGGGGTGGGGGTaGTGCCAGCATTCAGAGGGG +
Preference number: 2 (lower is better)
Translates to: PHPESFNEDSRLSGLEKWVWGWG*CQHSEG
Trigger: CCCCTCTGAATGCTGGCAGCACCCCCACCCCCACAC...CCATTTCTCTAAGCCCGAGAGTCTTGAGTCTTCATTAAAGGATTCTGGGTGTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR GCA 90 bp AGCTCCTCCTGGAACCAGGTCGCTGGATGGCGGTTAACTGGGGACAAAACACATAACAGAAGGCCCTGCTaGAGCCTAGTCAAGAGAAGG +
Preference number: 2 (lower is better)
Translates to: SSSWNQVAGWRLTGDKTHNRRPC*SLVKRR
Trigger: CCTTCTCTTGACTAGGCTGCAGCAGGGCCTTCTGTT...ATGTGTTTTGTCCCCAGTTAACCGCCATCCAGCGACCTGGTTCCAGGAGGAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp CTACTGTTGCTGGCTTTGCCCTGGACTTTCCAAGGAAGAGGCTTTGCCCATTGCAAGGGTGGAAGGCGGTaGACAAGGACTGAGAGGAGT +
Preference number: 2 (lower is better)
Translates to: LLLLALPWTFQGRGFAHCKGGRR*TRTERS
Trigger: ACTCCTCTCAGTCCTTGTCCACCGCCTTCCACCCTT...GCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGCCAGCAACAGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp CAAGGTTTGAGGTGCCCTAACACCAGGAATCACAGGTGGGGCTCTGCTCCGGGCATCGGAAAATATGTCTaGAACTCTATGGCAAGGGGG +
Preference number: 2 (lower is better)
Translates to: QGLRCPNTRNHRWGSAPGIGKYV*NSMARG
Trigger: CCCCCTTGCCATAGAGTTCCAGACATATTTTCCGAT...GCCCGGAGCAGAGCCCCACCTGTGATTCCTGGTGTTAGGGCACCTCAAACCTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp CAGGTAGGGGTCTGGAAATGGCGGGAAGGGGTGTGGTCCAGCCCAAGGTTTGAGTGGAAGACTAAAGATTaGGGGCCCTTTAAGAGAAGG +
Preference number: 2 (lower is better)
Translates to: QVGVWKWREGVWSSPRFEWKTKD*GPFKRR
Trigger: CCTTCTCTTAAAGGGCCCCCAATCTTTAGTCTTCCA...CTCAAACCTTGGGCTGGACCACACCCCTTCCCGCCATTTCCAGACCCCTACCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp AAGAGGTCTTGGTTGACCTGTTTCGTTTCCCACCCCATCCTCCCAAGGGAGAGCGGTTGCTACTGTTGCTaGCTTTGCCCTGGACTTTCC +
Preference number: 2 (lower is better)
Translates to: KRSWLTCFVSHPILPRESGCYCC*LCPGLS
Trigger: GGAAAGTCCAGGGCAAAGCCAGCAACAGTAGCAACC...GCTCTCCCTTGGGAGGATGGGGTGGGAAACGAAACAGGTCAACCAAGACCTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR TCA 90 bp AGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAACATGGATGGTGGTCCTGTGGAAGAAAGCTACAGTaGCCATCCAGAGTTCCTTCC +
Preference number: 2 (lower is better)
Translates to: RRSSRELKGPGEHGWWSCGRKLQ*PSRVPS
Trigger: GGAAGGAACTCTGGATGGTCACTGTAGCTTTCTTCC...ACAGGACCACCATCCATGTTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR GCA 90 bp GTCCATGACCTGAGTGTCAGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAAAGAGTGAGAGGAGGTTaGTACTGTTGCTGGCTTTGC +
Preference number: 2 (lower is better)
Translates to: VHDLSVRRSSRELKGPGERVRGG*YCCWLC
Trigger: GCAAAGCCAGCAACAGTAGCAACCTCCTCTCACTCT...TTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCTGACACTCAGGTCATGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR GCA 90 bp AGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAACATGGATGGTGGTCCTGTAGAGTGAGAGGAGGTTaGTACTGTTGCTGGCTTTGC +
Preference number: 2 (lower is better)
Translates to: RRSSRELKGPGEHGWWSCRVRGG*YCCWLC
Trigger: GCAAAGCCAGCAACAGTAGCAACCTCCTCTCACTCT...ACAGGACCACCATCCATGTTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp GAGGACCCTCCTGCACTGGGGGTGCTGAATAACTTGAGGACCAAGTCTGGTCCCATCGGAAAATATGTCTaGAACTCTATGGCAAGGGGG +
Preference number: 2 (lower is better)
Translates to: EDPPALGVLNNLRTKSGPIGKYV*NSMARG
Trigger: CCCCCTTGCCATAGAGTTCCAGACATATTTTCCGAT...GGGACCAGACTTGGTCCTCAAGTTATTCAGCACCCCCAGTGCAGGAGGGTCCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR GCA 90 bp GCACGTCTCGGAGTTTCACAAGTGTCGGAACTAATGATGTCTGAAAGCCTAGGGGGCCTCCAGGTAGGCTaGAAACGCTGTCTCTTCGTA +
Preference number: 2 (lower is better)
Translates to: ARLGVSQVSELMMSESLGGLQVG*KRCLFV
Trigger: TACGAAGAGACAGCGTTTGCAGCCTACCTGGAGGCC...CCCTAGGCTTTCAGACATCATTAGTTCCGACACTTGTGAAACTCCGAGACGTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR GCA 90 bp GTCCATGACCTGAGTGTCAGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAATACTGTTGCTGGCTTTaGCCTGGACTTTCCAAGGAA +
Preference number: 2 (lower is better)
Translates to: VHDLSVRRSSRELKGPGEYCCWL*PGLSKE
Trigger: TTCCTTGGAAAGTCCAGGGCAAAGCCAGCAACAGTA...TTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCTGACACTCAGGTCATGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp GCACGTCTCGGAGTTTCACAAGTGTCGGAACTAATGATGTCTGAAAGCCTAGGGAAGGGTGGAAGGCGGTaGACAAGGACTGAGAGGAGT +
Preference number: 2 (lower is better)
Translates to: ARLGVSQVSELMMSESLGKGGRR*TRTERS
Trigger: ACTCCTCTCAGTCCTTGTCCACCGCCTTCCACCCTT...CCCTAGGCTTTCAGACATCATTAGTTCCGACACTTGTGAAACTCCGAGACGTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR CAA 90 bp GTTGCTGGCTTTGCCCTGGACTTTCCAAGGAAGAGGCTTTGCCCATaGCCAAGGACTAAAGAGACAGGTAGGGTCTCTGCAAATGCTCAT +
Preference number: 2 (lower is better)
Translates to: VAGFALDFPRKRLCP*PRTKETGRVSANAH
Trigger: ATGAGCATTTGCAGAGACCCTACCTGTCTCTTTAGTCCTTGGCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGCCAGCAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR GCA 90 bp GGGACTAAAAGGTCAAGGAAGAAAGCTACAGTGACCATCCAGAGTTCCTTCCTCGGCCTCCAGGTAGGCTaGAAACGCTGTCTCTTCGTA +
Preference number: 2 (lower is better)
Translates to: GTKRSRKKATVTIQSSFLGLQVG*KRCLFV
Trigger: TACGAAGAGACAGCGTTTGCAGCCTACCTGGAGGCC...GAGGAAGGAACTCTGGATGGTCACTGTAGCTTTCTTCCTTGACCTTTTAGTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR GCA 90 bp ATGTTGGGGACTAAAAGGTCAAGGAAGAAAGCTACAGTGACCATCCAGAGTTCCTCCCTCCCACTCACCTaGCTTCATGTCTGGGGGAGT +
Preference number: 2 (lower is better)
Translates to: MLGTKRSRKKATVTIQSSSLPLT*LHVWGS
Trigger: ACTCCCCCAGACATGAAGGCAGGTGAGTGGGAGGGA...GGAACTCTGGATGGTCACTGTAGCTTTCTTCCTTGACCTTTTAGTCCCCAACAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp GTCCATGACCTGAGTGTCAGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAATGGAAGACTAAAGATTaGGGGCCCTTTAAGAGAAGG +
Preference number: 2 (lower is better)
Translates to: VHDLSVRRSSRELKGPGEWKTKD*GPFKRR
Trigger: CCTTCTCTTAAAGGGCCCCCAATCTTTAGTCTTCCA...TTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCTGACACTCAGGTCATGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp GACCCCAAAGCTTGGGTCCATGACCTGAGTGTCAGGAGAAGCAGCAGAGAGCTATGGAAGACTAAAGATTaGGGGCCCTTTAAGAGAAGG +
Preference number: 2 (lower is better)
Translates to: DPKAWVHDLSVRRSSRELWKTKD*GPFKRR
Trigger: CCTTCTCTTAAAGGGCCCCCAATCTTTAGTCTTCCA...TAGCTCTCTGCTGCTTCTCCTGACACTCAGGTCATGGACCCAAGCTTTGGGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR TCA 90 bp AATTACACAATCATGTATAAAACAGGTGCATTGCTGAGACCACGGCACGTCTCGAATGCTCATTGGCTCTaGGGAGGAGCCCTCTGCCCA +
Preference number: 2 (lower is better)
Translates to: NYTIMYKTGALLRPRHVSNAHWL*GGALCP
Trigger: TGGGCAGAGGGCTCCTCCTCAGAGCCAATGAGCATT...CGAGACGTGCCGTGGTCTCAGCAATGCACCTGTTTTATACATGATTGTGTAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR TCA 90 bp AATTACACAATCATGTATAAAACAGGTGCATTGCTGAGACCACGGCACGTCTCGCCTAGGTTGGCCAGGTaGGAGCCTTGTAGACCGTCT +
Preference number: 2 (lower is better)
Translates to: NYTIMYKTGALLRPRHVSPRLAR*EPCRPS
Trigger: AGACGGTCTACAAGGCTCTCACCTGGCCAACCTAGG...CGAGACGTGCCGTGGTCTCAGCAATGCACCTGTTTTATACATGATTGTGTAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR TCA 90 bp AATTACACAATCATGTATAAAACAGGTGCATTGCTGAGACCACGGCACGTCTCGGTCCAGCCCAAGGTTTaGGGTGCCCTAACACCAGGA +
Preference number: 2 (lower is better)
Translates to: NYTIMYKTGALLRPRHVSVQPKV*GALTPG
Trigger: TCCTGGTGTTAGGGCACCTCAAACCTTGGGCTGGAC...CGAGACGTGCCGTGGTCTCAGCAATGCACCTGTTTTATACATGATTGTGTAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR GCA 90 bp AATTACACAATCATGTATAAAACAGGTGCATTGCTGAGACCACGGCACGTCTCGTCCCTCCCACTCACCTaGCTTCATGTCTGGGGGAGT +
Preference number: 2 (lower is better)
Translates to: NYTIMYKTGALLRPRHVSSLPLT*LHVWGS
Trigger: ACTCCCCCAGACATGAAGGCAGGTGAGTGGGAGGGA...CGAGACGTGCCGTGGTCTCAGCAATGCACCTGTTTTATACATGATTGTGTAATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp GCACGTCTCGGAGTTTCACAAGTGTCGGAACTAATGATGTCTGAAAGCCTAGGGCACAGCCTGGTCAGATaGTCTGTTCTCCTTCTTCCT +
Preference number: 2 (lower is better)
Translates to: ARLGVSQVSELMMSESLGHSLVR*SVLLLP
Trigger: AGGAAGAAGGAGAACAGACCATCTGACCAGGCTGTG...CCCTAGGCTTTCAGACATCATTAGTTCCGACACTTGTGAAACTCCGAGACGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp AATTACACAATCATGTATAAAACAGGTGCATTGCTGAGACCACGGCACGTCTCGCACAGTGATTGGGGATaGGAGGGGCTGTGGCGTTTC +
Preference number: 2 (lower is better)
Translates to: NYTIMYKTGALLRPRHVSHSDWG*EGLWRF
Trigger: GAAACGCCACAGCCCCTCCCATCCCCAATCACTGTG...CGAGACGTGCCGTGGTCTCAGCAATGCACCTGTTTTATACATGATTGTGTAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp AATTACACAATCATGTATAAAACAGGTGCATTGCTGAGACCACGGCACGTCTCGCTGGAACCAGGTCGCTaGATGGCGGTTAACTGGGGA +
Preference number: 2 (lower is better)
Translates to: NYTIMYKTGALLRPRHVSLEPGR*MAVNWG
Trigger: TCCCCAGTTAACCGCCATCCAGCGACCTGGTTCCAG...CGAGACGTGCCGTGGTCTCAGCAATGCACCTGTTTTATACATGATTGTGTAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR GCA 90 bp CCACACCCAGAATCCTTTAATGAAGACTCAAGACTCTCGGGCTTAGAGAAATGGGGAGGTTGCTACTGTTaGTGGCTTTGCCCTGGACTT +
Preference number: 2 (lower is better)
Translates to: PHPESFNEDSRLSGLEKWGGCYC*WLCPGL
Trigger: AAGTCCAGGGCAAAGCCAGCAACAGTAGCAACCTCC...CCATTTCTCTAAGCCCGAGAGTCTTGAGTCTTCATTAAAGGATTCTGGGTGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp GGGACTAAAAGGTCAAGGAAGAAAGCTACAGTGACCATCCAGAGTTCCTTCCTCCACAGCCTGGTCAGATaGTCTGTTCTCCTTCTTCCT +
Preference number: 2 (lower is better)
Translates to: GTKRSRKKATVTIQSSFLHSLVR*SVLLLP
Trigger: AGGAAGAAGGAGAACAGACCATCTGACCAGGCTGTG...GAGGAAGGAACTCTGGATGGTCACTGTAGCTTTCTTCCTTGACCTTTTAGTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp CCACACCCAGAATCCTTTAATGAAGACTCAAGACTCTCGGGCTTAGAGAAATGGGGTTGCTACTGTTGCTaGCTTTGCCCTGGACTTTCC +
Preference number: 2 (lower is better)
Translates to: PHPESFNEDSRLSGLEKWGCYCC*LCPGLS
Trigger: GGAAAGTCCAGGGCAAAGCCAGCAACAGTAGCAACC...CCATTTCTCTAAGCCCGAGAGTCTTGAGTCTTCATTAAAGGATTCTGGGTGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp GGGACTAAAAGGTCAAGGAAGAAAGCTACAGTGACCATCCAGAGTTCCTTCCTCCTGAATCTCCTAGGTTaGCCAGGTGAGAGCCTTGTA +
Preference number: 2 (lower is better)
Translates to: GTKRSRKKATVTIQSSFLLNLLG*PGESLV
Trigger: TACAAGGCTCTCACCTGGCCAACCTAGGAGATTCAG...GAGGAAGGAACTCTGGATGGTCACTGTAGCTTTCTTCCTTGACCTTTTAGTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR GCA 90 bp GGGACTAAAAGGTCAAGGAAGAAAGCTACAGTGACCATCCAGAGTTCCTTCCTCCCAAGGAAGAGGCTTTaGCCATTGCCAAGGACTAAA +
Preference number: 2 (lower is better)
Translates to: GTKRSRKKATVTIQSSFLPRKRL*PLPRTK
Trigger: TTTAGTCCTTGGCAATGGGCAAAGCCTCTTCCTTGG...GAGGAAGGAACTCTGGATGGTCACTGTAGCTTTCTTCCTTGACCTTTTAGTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp GCACGTCTCGGAGTTTCACAAGTGTCGGAACTAATGATGTCTGAAAGCCTAGGGCACTGTAAGAGGTCTTaGTTGACCTGTTTCGTTTCC +
Preference number: 2 (lower is better)
Translates to: ARLGVSQVSELMMSESLGHCKRS*LTCFVS
Trigger: GGAAACGAAACAGGTCAACCAAGACCTCTTACAGTG...CCCTAGGCTTTCAGACATCATTAGTTCCGACACTTGTGAAACTCCGAGACGTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR GCA 90 bp AATTACACAATCATGTATAAAACAGGTGCATTGCTGAGACCACGGCACGTCTCGAGAGTGAGAGGAGGTTaGTACTGTTGCTGGCTTTGC +
Preference number: 2 (lower is better)
Translates to: NYTIMYKTGALLRPRHVSRVRGG*YCCWLC
Trigger: GCAAAGCCAGCAACAGTAGCAACCTCCTCTCACTCT...CGAGACGTGCCGTGGTCTCAGCAATGCACCTGTTTTATACATGATTGTGTAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp GGGACTAAAAGGTCAAGGAAGAAAGCTACAGTGACCATCCAGAGTTCCTTCCTCATCGGAAAATATGTCTaGAACTCTATGGCAAGGGGG +
Preference number: 2 (lower is better)
Translates to: GTKRSRKKATVTIQSSFLIGKYV*NSMARG
Trigger: CCCCCTTGCCATAGAGTTCCAGACATATTTTCCGAT...GAGGAAGGAACTCTGGATGGTCACTGTAGCTTTCTTCCTTGACCTTTTAGTCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp AATTACACAATCATGTATAAAACAGGTGCATTGCTGAGACCACGGCACGTCTCGCACAGCCTGGTCAGATaGTCTGTTCTCCTTCTTCCT +
Preference number: 2 (lower is better)
Translates to: NYTIMYKTGALLRPRHVSHSLVR*SVLLLP
Trigger: AGGAAGAAGGAGAACAGACCATCTGACCAGGCTGTG...CGAGACGTGCCGTGGTCTCAGCAATGCACCTGTTTTATACATGATTGTGTAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR GCA 90 bp AATTACACAATCATGTATAAAACAGGTGCATTGCTGAGACCACGGCACGTCTCGCCAAGGAAGAGGCTTTaGCCATTGCCAAGGACTAAA +
Preference number: 2 (lower is better)
Translates to: NYTIMYKTGALLRPRHVSPRKRL*PLPRTK
Trigger: TTTAGTCCTTGGCAATGGGCAAAGCCTCTTCCTTGG...CGAGACGTGCCGTGGTCTCAGCAATGCACCTGTTTTATACATGATTGTGTAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp AATTACACAATCATGTATAAAACAGGTGCATTGCTGAGACCACGGCACGTCTCGTGGATGGCGGTTAACTaGGGACAAAACACATCACTG +
Preference number: 2 (lower is better)
Translates to: NYTIMYKTGALLRPRHVSWMAVN*GQNTSL
Trigger: CAGTGATGTGTTTTGTCCCCAGTTAACCGCCATCCA...CGAGACGTGCCGTGGTCTCAGCAATGCACCTGTTTTATACATGATTGTGTAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CCA 90 bp AATTACACAATCATGTATAAAACAGGTGCATTGCTGAGACCACGGCACGTCTCGCACTGTAAGAGGTCTTaGTTGACCTGTTTCGTTTCC +
Preference number: 2 (lower is better)
Translates to: NYTIMYKTGALLRPRHVSHCKRS*LTCFVS
Trigger: GGAAACGAAACAGGTCAACCAAGACCTCTTACAGTG...CGAGACGTGCCGTGGTCTCAGCAATGCACCTGTTTTATACATGATTGTGTAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR GCA 72 bp TTCCCACCCCATCCTCCCAAGGGAGAGCCTGCCACCTaGTTCCCAACCACAAGGGCCCTGTGTCCCCTCCCA +
Preference number: 3 (lower is better)
Translates to: FPPHPPKGEPAT*FPTTRALCPLP
Trigger: TGGGAGGGGACACAGGGCCCTTGTGGTTGGGAAGCAGGTGGCAGGCTCTCCCTTGGGAGGATGGGGTGGGAA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR GCA 72 bp CAGTGGCGTCCCTCAGGTAGGACCTGTGCCCTCAACTaGCCAGCTTGGACAGCACTCAGCCTTGTCCGGCGC +
Preference number: 3 (lower is better)
Translates to: QWRPSGRTCALN*PAWTALSLVRR
Trigger: GCGCCGGACAAGGCTGAGTGCTGTCCAAGCTGGGCAGTTGAGGGCACAGGTCCTACCTGAGGGACGCCACTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232437.2
3UTR CCA 72 bp CCCTCAGGTAGGACCTGTGCCCTCAACTGCCCAGCTTaGACAGCACTCAGCCTTGTCCGGCGCCCACTCCAG +
Preference number: 3 (lower is better)
Translates to: PSGRTCALNCPA*TALSLVRRPLQ
Trigger: CTGGAGTGGGCGCCGGACAAGGCTGAGTGCTGTCCAAGCTGGGCAGTTGAGGGCACAGGTCCTACCTGAGGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232437.2
3UTR GCA 72 bp GTTTCGTTTCCCACCCCATCCTCCCAAGGGAGAGCCTaGCACCTGCTTCCCAACCACAAGGGCCCTGTGTCC +
Preference number: 3 (lower is better)
Translates to: VSFPTPSSQGRA*HLLPNHKGPVS
Trigger: GGACACAGGGCCCTTGTGGTTGGGAAGCAGGTGGCAGGCTCTCCCTTGGGAGGATGGGGTGGGAAACGAAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CAA 90 bp TCCTCCCAAGGGAGAGCCTGCCACCTGCTTCCCAACCACAAGGGCCCTGTGTCCCTCTGCAAATGCTCATaGGCTCTGAGGAGGAGCCCT +
Preference number: 3 (lower is better)
Translates to: SSQGRACHLLPNHKGPVSLCKCS*ALRRSP
Trigger: AGGGCTCCTCCTCAGAGCCAATGAGCATTTGCAGAG...GGACACAGGGCCCTTGTGGTTGGGAAGCAGGTGGCAGGCTCTCCCTTGGGAGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR TCA 72 bp GAGACAGGTAGGGTCTCTGCAAATGCTCATTGGCTCTaGGGAGGAGCCCTCTGCCCACAGGCCCAGCTAGGG +
Preference number: 3 (lower is better)
Translates to: ETGRVSANAHWL*GGALCPQAQLG
Trigger: CCCTAGCTGGGCCTGTGGGCAGAGGGCTCCTCCTCAGAGCCAATGAGCATTTGCAGAGACCCTACCTGTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR TCA 72 bp GTGGAGAAGGGGAGGTTTGAATCCTGCTTCCGGTTCTaGGGGCTCCAGGGCCCAACCTGGGCTGCAGCTGAA +
Preference number: 3 (lower is better)
Translates to: VEKGRFESCFRF*GLQGPTWAAAE
Trigger: TTCAGCTGCAGCCCAGGTTGGGCCCTGGAGCCCTCAGAACCGGAAGCAGGATTCAAACCTCCCCTTCTCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR TCA 72 bp TGTCCGGCGCCCACTCCAGGACAGACATCTTCATTCTaGAGACACTTCCAAGGGCTGGCCCCACACCCTCCC +
Preference number: 3 (lower is better)
Translates to: CPAPTPGQTSSF*RHFQGLAPHPP
Trigger: GGGAGGGTGTGGGGCCAGCCCTTGGAAGTGTCTTCAGAATGAAGATGTCTGTCCTGGAGTGGGCGCCGGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232437.2
3UTR CCA 72 bp GGCTCAGGTGACATGGGCAGCTGCTGGCAGCTGTGGTaGGATAGGAGAGCGAGACAGGGTAGAAGGATCCAG +
Preference number: 3 (lower is better)
Translates to: GSGDMGSCWQLW*DRRARQGRRIQ
Trigger: CTGGATCCTTCTACCCTGTCTCGCTCTCCTATCCCACCACAGCTGCCAGCAGCTGCCCATGTCACCTGAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR CCA 72 bp CCAGGCTCAGGTGACATGGGCAGCTGCTGGCAGCTGTaGTGGGATAGGAGAGCGAGACAGGGTAGAAGGATC +
Preference number: 3 (lower is better)
Translates to: PGSGDMGSCWQL*WDRRARQGRRI
Trigger: GATCCTTCTACCCTGTCTCGCTCTCCTATCCCACCACAGCTGCCAGCAGCTGCCCATGTCACCTGAGCCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR TCA 72 bp GAAATGGCGGGAAGGGGTGTGGTCCAGCCCAAGGTTTaGGGTGCCCTAACACCAGGAATCACAGGTGGGGCT +
Preference number: 3 (lower is better)
Translates to: EMAGRGVVQPKV*GALTPGITGGA
Trigger: AGCCCCACCTGTGATTCCTGGTGTTAGGGCACCTCAAACCTTGGGCTGGACCACACCCCTTCCCGCCATTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR GCA 72 bp GAGTTTAGGAAGCCAGGCTCAGGTGACATGGGCAGCTaGTGGCAGCTGTGGTGGGATAGGAGAGCGAGACAG +
Preference number: 3 (lower is better)
Translates to: EFRKPGSGDMGS*WQLWWDRRARQ
Trigger: CTGTCTCGCTCTCCTATCCCACCACAGCTGCCAGCAGCTGCCCATGTCACCTGAGCCTGGCTTCCTAAACTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR GCA 72 bp AAGCCCAGGCCCCAAGGTGCGGACATGGCGGCTTCTTaGCTTTCTGAGATGAGGGTGAAGGTAAGAGCTGGG +
Preference number: 3 (lower is better)
Translates to: KPRPQGADMAAS*LSEMRVKVRAG
Trigger: CCCAGCTCTTACCTTCACCCTCATCTCAGAAAGGCAAGAAGCCGCCATGTCCGCACCTTGGGGCCTGGGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR CCA 72 bp CATCCAGAGTTCCTTCCTCACACCAGCCTGAGCTGCTaGCTTCCCCTTACAGTGCCAAGGTGGAGGTTCCCC +
Preference number: 3 (lower is better)
Translates to: HPEFLPHTSLSC*LPLTVPRWRFP
Trigger: GGGGAACCTCCACCTTGGCACTGTAAGGGGAAGCCAGCAGCTCAGGCTGGTGTGAGGAAGGAACTCTGGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR CCA 72 bp CTCCTCCTGGAACCAGGTCGCTGGATGGCGGTTAACTaGGGACAAAACACATCACTGACCGAGCCCTGCAGG +
Preference number: 3 (lower is better)
Translates to: LLLEPGRWMAVN*GQNTSLTEPCR
Trigger: CCTGCAGGGCTCGGTCAGTGATGTGTTTTGTCCCCAGTTAACCGCCATCCAGCGACCTGGTTCCAGGAGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CAA 90 bp AACACATCACTGACCGAGCCCTGCAGGGTCCCGTGCAGCATCAAGAGGCCCCTGCTACTGTTGCTGGCTTaGCCCTGGACTTTCCAAGGA +
Preference number: 3 (lower is better)
Translates to: NTSLTEPCRVPCSIKRPLLLLLA*PWTFQG
Trigger: TCCTTGGAAAGTCCAGGGCAAAGCCAGCAACAGTAG...CAGGGGCCTCTTGATGCTGCACGGGACCCTGCAGGGCTCGGTCAGTGATGTGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CAA 90 bp AGCTCCTCCTGGAACCAGGTCGCTGGATGGCGGTTAACTGGGGACAAAACACATGGTCCAGCCCAAGGTTaGAGGTGCCCTAACACCAGG +
Preference number: 3 (lower is better)
Translates to: SSSWNQVAGWRLTGDKTHGPAQG*RCPNTR
Trigger: CCTGGTGTTAGGGCACCTCAAACCTTGGGCTGGACC...ATGTGTTTTGTCCCCAGTTAACCGCCATCCAGCGACCTGGTTCCAGGAGGAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR TCA 72 bp GGTCCTGTTCTTTCCCTGGAGGCCCAAAAGGTCACCTaGTTCACAAGGCAGAGGGTGTCCGTAGGCCAGAGG +
Preference number: 3 (lower is better)
Translates to: GPVLSLEAQKVT*FTRQRVSVGQR
Trigger: CCTCTGGCCTACGGACACCCTCTGCCTTGTGAATCAGGTGACCTTTTGGGCCTCCAGGGAAAGAACAGGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR TCA 72 bp GCTGGATGGCGGTTAACTGGGGACAAAACACATCACTaGCCGAGCCCTGCAGGGTCCCGTGCAGCATCAAGA +
Preference number: 3 (lower is better)
Translates to: AGWRLTGDKTHH*PSPAGSRAASR
Trigger: TCTTGATGCTGCACGGGACCCTGCAGGGCTCGGTCAGTGATGTGTTTTGTCCCCAGTTAACCGCCATCCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CAA 90 bp CAAGGTTTGAGGTGCCCTAACACCAGGAATCACAGGTGGGGCTCTGCTCCGGGCGACTCAGGAGACTCTTaGGTGGACTCTATAGACCAG +
Preference number: 3 (lower is better)
Translates to: QGLRCPNTRNHRWGSAPGDSGDS*VDSIDQ
Trigger: CTGGTCTATAGAGTCCACCAAAGAGTCTCCTGAGTC...GCCCGGAGCAGAGCCCCACCTGTGATTCCTGGTGTTAGGGCACCTCAAACCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CAA 90 bp GGAAATGGCGGGAAGGGGTGTGGTCCAGCCCAAGGTTTGAGGTGCCCTAACACCTTACAGCCCTGTCTCTaGAGTGCTAAGTTCCTGCTC +
Preference number: 3 (lower is better)
Translates to: GNGGKGCGPAQGLRCPNTLQPCL*SAKFLL
Trigger: GAGCAGGAACTTAGCACTCAAGAGACAGGGCTGTAA...GGTGTTAGGGCACCTCAAACCTTGGGCTGGACCACACCCCTTCCCGCCATTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR TCA 72 bp TCTCGGAGTTTCACAAGTGTCGGAACTAATGATGTCTaGAAGCCTAGGGCGGCAGACGCAGTGGCGGCGGTG +
Preference number: 3 (lower is better)
Translates to: SRSFTSVGTNDV*KPRAADAVAAV
Trigger: CACCGCCGCCACTGCGTCTGCCGCCCTAGGCTTTCAGACATCATTAGTTCCGACACTTGTGAAACTCCGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR GCA 72 bp TGCCTCCTCCCCAGAGTGAGAGGAGGTTGCTACTGTTaGTGGCTTTGCCCTGGACTTTCCAAGGAAGAGGCT +
Preference number: 3 (lower is better)
Translates to: CLLPRVRGGCYC*WLCPGLSKEEA
Trigger: AGCCTCTTCCTTGGAAAGTCCAGGGCAAAGCCAGCAACAGTAGCAACCTCCTCTCACTCTGGGGAGGAGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR CCA 72 bp GAGAGTCGCATATTGTATCTGAGGCCAGAACCTCAGTaGCGTCCCTCAGGTAGGACCTGTGCCCTCAACTGC +
Preference number: 3 (lower is better)
Translates to: ESRILYLRPEPQ*RPSGRTCALNC
Trigger: GCAGTTGAGGGCACAGGTCCTACCTGAGGGACGCCACTGAGGTTCTGGCCTCAGATACAATATGCGACTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232437.2
3UTR-3UTR CAA 90 bp CTCCTGTATGCCAGGGAGGCCATGACTCCCTCCCACTCACCTGCCTTCATGTCTGACTCAGGAGACTCTTaGGTGGACTCTATAGACCAG +
Preference number: 3 (lower is better)
Translates to: LLYAREAMTPSHSPAFMSDSGDS*VDSIDQ
Trigger: CTGGTCTATAGAGTCCACCAAAGAGTCTCCTGAGTC...AGACATGAAGGCAGGTGAGTGGGAGGGAGTCATGGCCTCCCTGGCATACAGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CAA 90 bp GGAAATGGCGGGAAGGGGTGTGGTCCAGCCCAAGGTTTGAGGTGCCCTAACACCAAGAGGCTTTGCCCATaGCCAAGGACTAAAGAGACA +
Preference number: 3 (lower is better)
Translates to: GNGGKGCGPAQGLRCPNTKRLCP*PRTKET
Trigger: TGTCTCTTTAGTCCTTGGCAATGGGCAAAGCCTCTT...GGTGTTAGGGCACCTCAAACCTTGGGCTGGACCACACCCCTTCCCGCCATTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR CCA 72 bp GAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAACATaGATGGTGGTCCTGTTCTTTCCCTGGAGGCCCAAA +
Preference number: 3 (lower is better)
Translates to: EKQQRAKGSRRT*MVVLFFPWRPK
Trigger: TTTGGGCCTCCAGGGAAAGAACAGGACCACCATCCATGTTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CAA 90 bp TTGCTGGCTTTGCCCTGGACTTTCCAAGGAAGAGGCTTTGCCCATTGCCAAGGACTCTGCAAATGCTCATaGGCTCTGAGGAGGAGCCCT +
Preference number: 3 (lower is better)
Translates to: LLALPWTFQGRGFAHCQGLCKCS*ALRRSP
Trigger: AGGGCTCCTCCTCAGAGCCAATGAGCATTTGCAGAG...TCCTTGGCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGCCAGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CAA 90 bp TGGGCTGCAGCTGAAGCCCCAAGGGCAAACAGTGACAGGGAAGTGGGTGCTTACAAGAGGCTTTGCCCATaGCCAAGGACTAAAGAGACA +
Preference number: 3 (lower is better)
Translates to: WAAAEAPRANSDREVGAYKRLCP*PRTKET
Trigger: TGTCTCTTTAGTCCTTGGCAATGGGCAAAGCCTCTT...GTAAGCACCCACTTCCCTGTCACTGTTTGCCCTTGGGGCTTCAGCTGCAGCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR GCA 72 bp GCTGGCTTTGCCCTGGACTTTCCAAGGAAGAGGCTTTaGCCATTGCCAAGGACTAAAGAGACAGGTAGGGTC +
Preference number: 3 (lower is better)
Translates to: AGFALDFPRKRL*PLPRTKETGRV
Trigger: GACCCTACCTGTCTCTTTAGTCCTTGGCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGCCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR CCA 72 bp TCCCGGAGAACATGGATGGTGGTCCTGTTCTTTCCCTaGAGGCCCAAAAGGTCACCTGATTCACAAGGCAGA +
Preference number: 3 (lower is better)
Translates to: SRRTWMVVLFFP*RPKRSPDSQGR
Trigger: TCTGCCTTGTGAATCAGGTGACCTTTTGGGCCTCCAGGGAAAGAACAGGACCACCATCCATGTTCTCCGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CAA 90 bp CTACTGTTGCTGGCTTTGCCCTGGACTTTCCAAGGAAGAGGCTTTGCCCATTGCAAAATGGGCTTGGCATaGGGAGTGTTGGCACAGCCT +
Preference number: 3 (lower is better)
Translates to: LLLLALPWTFQGRGFAHCKMGLA*GVLAQP
Trigger: AGGCTGTGCCAACACTCCCAATGCCAAGCCCATTTT...GCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGCCAGCAACAGTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CAA 90 bp CTACTGTTGCTGGCTTTGCCCTGGACTTTCCAAGGAAGAGGCTTTGCCCATTGCTCCCTCAAAATGGGCTaGGCATTGGGAGTGTTGGCA +
Preference number: 3 (lower is better)
Translates to: LLLLALPWTFQGRGFAHCSLKMG*ALGVLA
Trigger: TGCCAACACTCCCAATGCCAAGCCCATTTTGAGGGA...GCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGCCAGCAACAGTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CAA 90 bp TGCTTACAGCCCTGTCTCTTGAGTGCTAAGTTCCTGCTCCTGGCCCTGAGGGAGTGTAAGAGGTCTTGGTaGACCTGTTTCGTTTCCCAC +
Preference number: 3 (lower is better)
Translates to: CLQPCLLSAKFLLLALRECKRSW*TCFVSH
Trigger: GTGGGAAACGAAACAGGTCAACCAAGACCTCTTACA...CTCCCTCAGGGCCAGGAGCAGGAACTTAGCACTCAAGAGACAGGGCTGTAAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR TCA 72 bp TGTAGACCGTCTTCACAAAGGCTGATGCTGACACAGTaGTTGGGGATGGGAGGGGCTGTGGCGTTTCTGAAT +
Preference number: 3 (lower is better)
Translates to: CRPSSQRLMLTQ*LGMGGAVAFLN
Trigger: ATTCAGAAACGCCACAGCCCCTCCCATCCCCAATCACTGTGTCAGCATCAGCCTTTGTGAAGACGGTCTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR TCA 72 bp CTCCTGGTCAATGCTATGAGAGTCGCATATTGTATCTaGGGCCAGAACCTCAGTGGCGTCCCTCAGGTAGGA +
Preference number: 3 (lower is better)
Translates to: LLVNAMRVAYCI*GQNLSGVPQVG
Trigger: TCCTACCTGAGGGACGCCACTGAGGTTCTGGCCTCAGATACAATATGCGACTCTCATAGCATTGACCAGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232437.2
3UTR CCA 72 bp CAAAATGGGCTTGGCATTGGGAGTGTTGGCACAGCCTaGTCAGATGGTCTGTTCTCCTTCTTCCTCTCCTGT +
Preference number: 3 (lower is better)
Translates to: QNGLGIGSVGTA*SDGLFSFFLSC
Trigger: ACAGGAGAGGAAGAAGGAGAACAGACCATCTGACCAGGCTGTGCCAACACTCCCAATGCCAAGCCCATTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR CCA 72 bp AGTGAGAGGAGGTTGCTACTGTTGCTGGCTTTGCCCTaGACTTTCCAAGGAAGAGGCTTTGCCCATTGCCAA +
Preference number: 3 (lower is better)
Translates to: SERRLLLLLALP*TFQGRGFAHCQ
Trigger: TTGGCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGCCAGCAACAGTAGCAACCTCCTCTCACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CAA 90 bp GCACGTCTCGGAGTTTCACAAGTGTCGGAACTAATGATGTCTGAAAGCCTAGGGAAAATGGGCTTGGCATaGGGAGTGTTGGCACAGCCT +
Preference number: 3 (lower is better)
Translates to: ARLGVSQVSELMMSESLGKMGLA*GVLAQP
Trigger: AGGCTGTGCCAACACTCCCAATGCCAAGCCCATTTT...CCCTAGGCTTTCAGACATCATTAGTTCCGACACTTGTGAAACTCCGAGACGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CAA 90 bp AATTACACAATCATGTATAAAACAGGTGCATTGCTGAGACCACGGCACGTCTCGGGTCCAGCCCAAGGTTaGAGGTGCCCTAACACCAGG +
Preference number: 3 (lower is better)
Translates to: NYTIMYKTGALLRPRHVSGPAQG*RCPNTR
Trigger: CCTGGTGTTAGGGCACCTCAAACCTTGGGCTGGACC...CGAGACGTGCCGTGGTCTCAGCAATGCACCTGTTTTATACATGATTGTGTAATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR GCA 72 bp TTGCCCTGGACTTTCCAAGGAAGAGGCTTTGCCCATTaGCAAGGACTAAAGAGACAGGTAGGGTCTCTGCAA +
Preference number: 3 (lower is better)
Translates to: LPWTFQGRGFAH*QGLKRQVGSLQ
Trigger: TTGCAGAGACCCTACCTGTCTCTTTAGTCCTTGGCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR CCA 72 bp AAACAGCCTCTGACCACTTTCCACTGTAAGAGGTCTTaGTTGACCTGTTTCGTTTCCCACCCCATCCTCCCA +
Preference number: 3 (lower is better)
Translates to: KQPLTTFHCKRS*LTCFVSHPILP
Trigger: TGGGAGGATGGGGTGGGAAACGAAACAGGTCAACCAAGACCTCTTACAGTGGAAAGTGGTCAGAGGCTGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CAA 90 bp GCACGTCTCGGAGTTTCACAAGTGTCGGAACTAATGATGTCTGAAAGCCTAGGGGACTCAGGAGACTCTTaGGTGGACTCTATAGACCAG +
Preference number: 3 (lower is better)
Translates to: ARLGVSQVSELMMSESLGDSGDS*VDSIDQ
Trigger: CTGGTCTATAGAGTCCACCAAAGAGTCTCCTGAGTC...CCCTAGGCTTTCAGACATCATTAGTTCCGACACTTGTGAAACTCCGAGACGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CAA 90 bp ATGTTGGGGACTAAAAGGTCAAGGAAGAAAGCTACAGTGACCATCCAGAGTTCCCTCTGCAAATGCTCATaGGCTCTGAGGAGGAGCCCT +
Preference number: 3 (lower is better)
Translates to: MLGTKRSRKKATVTIQSSLCKCS*ALRRSP
Trigger: AGGGCTCCTCCTCAGAGCCAATGAGCATTTGCAGAG...GGAACTCTGGATGGTCACTGTAGCTTTCTTCCTTGACCTTTTAGTCCCCAACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CAA 90 bp ATGTTGGGGACTAAAAGGTCAAGGAAGAAAGCTACAGTGACCATCCAGAGTTCCAGGAGGTTGCTACTGTaGCTGGCTTTGCCCTGGACT +
Preference number: 3 (lower is better)
Translates to: MLGTKRSRKKATVTIQSSRRLLL*LALPWT
Trigger: AGTCCAGGGCAAAGCCAGCAACAGTAGCAACCTCCT...GGAACTCTGGATGGTCACTGTAGCTTTCTTCCTTGACCTTTTAGTCCCCAACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR TCA 72 bp TCAGGAGACTCTTTGGTGGACTCTATAGACCAGATGTaGCATTGGGTTAAGTCCCAAGATCCTTGCCCACGC +
Preference number: 3 (lower is better)
Translates to: SGDSLVDSIDQM*HWVKSQDPCPR
Trigger: GCGTGGGCAAGGATCTTGGGACTTAACCCAATGTCACATCTGGTCTATAGAGTCCACCAAAGAGTCTCCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR TCA 72 bp TGTTGGGGACTAAAAGGTCAAGGAAGAAAGCTACAGTaGCCATCCAGAGTTCCTTCCTCACACCAGCCTGAG +
Preference number: 3 (lower is better)
Translates to: CWGLKGQGRKLQ*PSRVPSSHQPE
Trigger: CTCAGGCTGGTGTGAGGAAGGAACTCTGGATGGTCACTGTAGCTTTCTTCCTTGACCTTTTAGTCCCCAACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CAA 90 bp CCACACCCAGAATCCTTTAATGAAGACTCAAGACTCTCGGGCTTAGAGAAATGGTCCCTCAAAATGGGCTaGGCATTGGGAGTGTTGGCA +
Preference number: 3 (lower is better)
Translates to: PHPESFNEDSRLSGLEKWSLKMG*ALGVLA
Trigger: TGCCAACACTCCCAATGCCAAGCCCATTTTGAGGGA...CCATTTCTCTAAGCCCGAGAGTCTTGAGTCTTCATTAAAGGATTCTGGGTGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CAA 90 bp CCACACCCAGAATCCTTTAATGAAGACTCAAGACTCTCGGGCTTAGAGAAATGGCTACTGTTGCTGGCTTaGCCCTGGACTTTCCAAGGA +
Preference number: 3 (lower is better)
Translates to: PHPESFNEDSRLSGLEKWLLLLA*PWTFQG
Trigger: TCCTTGGAAAGTCCAGGGCAAAGCCAGCAACAGTAG...CCATTTCTCTAAGCCCGAGAGTCTTGAGTCTTCATTAAAGGATTCTGGGTGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR-3UTR CAA 90 bp AATTACACAATCATGTATAAAACAGGTGCATTGCTGAGACCACGGCACGTCTCGCAGAGTGAGAGGAGGTaGCTACTGTTGCTGGCTTTG +
Preference number: 3 (lower is better)
Translates to: NYTIMYKTGALLRPRHVSQSERR*LLLLAL
Trigger: CAAAGCCAGCAACAGTAGCAACCTCCTCTCACTCTG...CGAGACGTGCCGTGGTCTCAGCAATGCACCTGTTTTATACATGATTGTGTAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR CCA 72 bp CAATGGACCAAACATCCAGTCTTAGAACCAGGAGTCTaGGGTTTTAAACGTCTGACTCTCCTGGTCAATGCT +
Preference number: 3 (lower is better)
Translates to: QWTKHPVLEPGV*GFKRLTLLVNA
Trigger: AGCATTGACCAGGAGAGTCAGACGTTTAAAACCCCAGACTCCTGGTTCTAAGACTGGATGTTTGGTCCATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232437.2
3UTR GCA 72 bp TATGGAAACACAACTTCCTCACCCATCAGACAAGAGTaGTACCAATGGACCAAACATCCAGTCTTAGAACCA +
Preference number: 3 (lower is better)
Translates to: YGNTTSSPIRQE*YQWTKHPVLEP
Trigger: TGGTTCTAAGACTGGATGTTTGGTCCATTGGTAGCACTCTTGTCTGATGGGTGAGGAAGTTGTGTTTCCATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232437.2
CDS-3UTR TCA 90 bp TCCTCCCAAGGGAGAGCCTGCCACCTGCTTCCCAACCACAAGGGCCCTGTGTCCTGCTGCGGAACCACCTaGGGTCCTCCTGGGCATCGG +
Preference number: 4 (lower is better)
Translates to: SSQGRACHLLPNHKGPVSCCGTT*GPPGHR
Trigger: CCGATGCCCAGGAGGACCTCAGGTGGTTCCGCAGCA...GGACACAGGGCCCTTGTGGTTGGGAAGCAGGTGGCAGGCTCTCCCTTGGGAGGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR TCA 90 bp TCCTCCCAAGGGAGAGCCTGCCACCTGCTTCCCAACCACAAGGGCCCTGTGTCCGAGGACCTTTCTCGATaGGCTGGCGCCAGCGCTTGG +
Preference number: 4 (lower is better)
Translates to: SSQGRACHLLPNHKGPVSEDLSR*AGASAW
Trigger: CCAAGCGCTGGCGCCAGCTCATCGAGAAAGGTCCTC...GGACACAGGGCCCTTGTGGTTGGGAAGCAGGTGGCAGGCTCTCCCTTGGGAGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR TCA 90 bp GGAAATGGCGGGAAGGGGTGTGGTCCAGCCCAAGGTTTGAGGTGCCCTAACACCTGCTGCGGAACCACCTaGGGTCCTCCTGGGCATCGG +
Preference number: 4 (lower is better)
Translates to: GNGGKGCGPAQGLRCPNTCCGTT*GPPGHR
Trigger: CCGATGCCCAGGAGGACCTCAGGTGGTTCCGCAGCA...GGTGTTAGGGCACCTCAAACCTTGGGCTGGACCACACCCCTTCCCGCCATTTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp TCCTCCCAAGGGAGAGCCTGCCACCTGCTTCCCAACCACAAGGGCCCTGTGTCCGGTGCCCATCGTCGATaGGCTTCACCGTCCGCTTGT +
Preference number: 4 (lower is better)
Translates to: SSQGRACHLLPNHKGPVSGAHRR*ASPSAC
Trigger: ACAAGCGGACGGTGAAGCGCATCGACGATGGGCACC...GGACACAGGGCCCTTGTGGTTGGGAAGCAGGTGGCAGGCTCTCCCTTGGGAGGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp TCCTCCCAAGGGAGAGCCTGCCACCTGCTTCCCAACCACAAGGGCCCTGTGTCCGGTGTGCGGGAGGTCTaGGTTCCACTCCTCGAACTG +
Preference number: 4 (lower is better)
Translates to: SSQGRACHLLPNHKGPVSGVREV*VPLLEL
Trigger: CAGTTCGAGGAGTGGAACCCAGACCTCCCGCACACC...GGACACAGGGCCCTTGTGGTTGGGAAGCAGGTGGCAGGCTCTCCCTTGGGAGGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp CTCCTGTATGCCAGGGAGGCCATGACTCCCTCCCACTCACCTGCCTTCATGTCTCAGCCCCAGTGGCATTaGTCAGGGTGGCCCCCTCTG +
Preference number: 4 (lower is better)
Translates to: LLYAREAMTPSHSPAFMSQPQWH*SGWPPL
Trigger: CAGAGGGGGCCACCCTGAGCAATGCCACTGGGGCTG...AGACATGAAGGCAGGTGAGTGGGAGGGAGTCATGGCCTCCCTGGCATACAGGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp CAAGGTTTGAGGTGCCCTAACACCAGGAATCACAGGTGGGGCTCTGCTCCGGGCCCTTTCTCGATGAGCTaGCGCCAGCGCTTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: QGLRCPNTRNHRWGSAPGPFSMS*RQRLAQ
Trigger: CTGGGCCAAGCGCTGGCGCCAGCTCATCGAGAAAGG...GCCCGGAGCAGAGCCCCACCTGTGATTCCTGGTGTTAGGGCACCTCAAACCTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp AACACATCACTGACCGAGCCCTGCAGGGTCCCGTGCAGCATCAAGAGGCCCCTGCCCCAGCCTGGGATGTaGATTCTACAGCCCCAGTGG +
Preference number: 4 (lower is better)
Translates to: NTSLTEPCRVPCSIKRPLPQPGM*ILQPQW
Trigger: CCACTGGGGCTGTAGAATCCACATCCCAGGCTGGGG...CAGGGGCCTCTTGATGCTGCACGGGACCCTGCAGGGCTCGGTCAGTGATGTGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR TCA 90 bp TGCTTACAGCCCTGTCTCTTGAGTGCTAAGTTCCTGCTCCTGGCCCTGAGGGAGGCTTGGCCCAGTCGGTaGGCTGCTGCGCGTATGCCT +
Preference number: 4 (lower is better)
Translates to: CLQPCLLSAKFLLLALREAWPSR*AAARMP
Trigger: AGGCATACGCGCAGCAGCTCACCGACTGGGCCAAGC...CTCCCTCAGGGCCAGGAGCAGGAACTTAGCACTCAAGAGACAGGGCTGTAAGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR TCA 90 bp TCCTCCCAAGGGAGAGCCTGCCACCTGCTTCCCAACCACAAGGGCCCTGTGTCCCCTGGTGCAGCTCGCTaGCCTTATCTGCTTCTGTCA +
Preference number: 4 (lower is better)
Translates to: SSQGRACHLLPNHKGPVSPGAAR*PYLLLS
Trigger: TGACAGAAGCAGATAAGGTCAGCGAGCTGCACCAGG...GGACACAGGGCCCTTGTGGTTGGGAAGCAGGTGGCAGGCTCTCCCTTGGGAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp CAAGGTTTGAGGTGCCCTAACACCAGGAATCACAGGTGGGGCTCTGCTCCGGGCGGTGCCCATCGTCGATaGGCTTCACCGTCCGCTTGT +
Preference number: 4 (lower is better)
Translates to: QGLRCPNTRNHRWGSAPGGAHRR*ASPSAC
Trigger: ACAAGCGGACGGTGAAGCGCATCGACGATGGGCACC...GCCCGGAGCAGAGCCCCACCTGTGATTCCTGGTGTTAGGGCACCTCAAACCTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp AACACATCACTGACCGAGCCCTGCAGGGTCCCGTGCAGCATCAAGAGGCCCCTGACGCCCGCTCCAGGCTaGCATACTGAGGACCTTTCT +
Preference number: 4 (lower is better)
Translates to: NTSLTEPCRVPCSIKRPLTPAPG*HTEDLS
Trigger: AGAAAGGTCCTCAGTATGGCAGCCTGGAGCGGGCGT...CAGGGGCCTCTTGATGCTGCACGGGACCCTGCAGGGCTCGGTCAGTGATGTGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp GGAAGCCAGGCTCAGGTGACATGGGCAGCTGCTGGCAGCTGTGGTGGGATAGGATCTCCTTCTTGGCAGTaGTGTGCGGGAGGTCTGGGT +
Preference number: 4 (lower is better)
Translates to: GSQAQVTWAAAGSCGGIGSPSWQ*CAGGLG
Trigger: ACCCAGACCTCCCGCACACCACTGCCAAGAAGGAGA...TCCTATCCCACCACAGCTGCCAGCAGCTGCCCATGTCACCTGAGCCTGGCTTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp GGAAGCCAGGCTCAGGTGACATGGGCAGCTGCTGGCAGCTGTGGTGGGATAGGAATTCTACAGCCCCAGTaGCATTGCTCAGGGTGGCCC +
Preference number: 4 (lower is better)
Translates to: GSQAQVTWAAAGSCGGIGILQPQ*HCSGWP
Trigger: GGGCCACCCTGAGCAATGCCACTGGGGCTGTAGAAT...TCCTATCCCACCACAGCTGCCAGCAGCTGCCCATGTCACCTGAGCCTGGCTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp CAGGTAGGGGTCTGGAAATGGCGGGAAGGGGTGTGGTCCAGCCCAAGGTTTGAGCCCCAGCCTGGGATGTaGATTCTACAGCCCCAGTGG +
Preference number: 4 (lower is better)
Translates to: QVGVWKWREGVWSSPRFEPQPGM*ILQPQW
Trigger: CCACTGGGGCTGTAGAATCCACATCCCAGGCTGGGG...CTCAAACCTTGGGCTGGACCACACCCCTTCCCGCCATTTCCAGACCCCTACCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR CAA 72 bp GGAAATGGCGGGAAGGGGTGTGGTCCAGCCCAAGGTTaGAGGTGCCCTAACACCAGGAATCACAGGTGGGGC +
Preference number: 4 (lower is better)
Translates to: GNGGKGCGPAQG*RCPNTRNHRWG
Trigger: GCCCCACCTGTGATTCCTGGTGTTAGGGCACCTCAAACCTTGGGCTGGACCACACCCCTTCCCGCCATTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR TCA 90 bp AGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAACATGGATGGTGGTCCTGTGCTTGGCCCAGTCGGTaGGCTGCTGCGCGTATGCCT +
Preference number: 4 (lower is better)
Translates to: RRSSRELKGPGEHGWWSCAWPSR*AAARMP
Trigger: AGGCATACGCGCAGCAGCTCACCGACTGGGCCAAGC...ACAGGACCACCATCCATGTTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR TCA 90 bp TGCTTACAGCCCTGTCTCTTGAGTGCTAAGTTCCTGCTCCTGGCCCTGAGGGAGGAGGACCTTTCTCGATaGGCTGGCGCCAGCGCTTGG +
Preference number: 4 (lower is better)
Translates to: CLQPCLLSAKFLLLALREEDLSR*AGASAW
Trigger: CCAAGCGCTGGCGCCAGCTCATCGAGAAAGGTCCTC...CTCCCTCAGGGCCAGGAGCAGGAACTTAGCACTCAAGAGACAGGGCTGTAAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR TCA 90 bp GTCCATGACCTGAGTGTCAGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAATGCTGCGGAACCACCTaGGGTCCTCCTGGGCATCGG +
Preference number: 4 (lower is better)
Translates to: VHDLSVRRSSRELKGPGECCGTT*GPPGHR
Trigger: CCGATGCCCAGGAGGACCTCAGGTGGTTCCGCAGCA...TTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCTGACACTCAGGTCATGGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp GGCACAGCCTGGTCAGATGGTCTGTTCTCCTTCTTCCTCTCCTGTATGCCAGGGGCCCAGTCGGTGAGCTaGTGCGCGTATGCCTTCTCG +
Preference number: 4 (lower is better)
Translates to: GTAWSDGLFSFFLSCMPGAQSVS*CAYAFS
Trigger: CGAGAAGGCATACGCGCAGCAGCTCACCGACTGGGC...CCCTGGCATACAGGAGAGGAAGAAGGAGAACAGACCATCTGACCAGGCTGTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp CAAGGTTTGAGGTGCCCTAACACCAGGAATCACAGGTGGGGCTCTGCTCCGGGCACGCCCGCTCCAGGCTaGCATACTGAGGACCTTTCT +
Preference number: 4 (lower is better)
Translates to: QGLRCPNTRNHRWGSAPGTPAPG*HTEDLS
Trigger: AGAAAGGTCCTCAGTATGGCAGCCTGGAGCGGGCGT...GCCCGGAGCAGAGCCCCACCTGTGATTCCTGGTGTTAGGGCACCTCAAACCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp AGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAACATGGATGGTGGTCCTGTCAGCCCCAGTGGCATTaGTCAGGGTGGCCCCCTCTG +
Preference number: 4 (lower is better)
Translates to: RRSSRELKGPGEHGWWSCQPQWH*SGWPPL
Trigger: CAGAGGGGGCCACCCTGAGCAATGCCACTGGGGCTG...ACAGGACCACCATCCATGTTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp AAGAGGTCTTGGTTGACCTGTTTCGTTTCCCACCCCATCCTCCCAAGGGAGAGCACTGCGGCCAGTTCATaGGCATCCCGGGGCCACTGG +
Preference number: 4 (lower is better)
Translates to: KRSWLTCFVSHPILPRESTAASS*ASRGHW
Trigger: CCAGTGGCCCCGGGATGCCCATGAACTGGCCGCAGT...GCTCTCCCTTGGGAGGATGGGGTGGGAAACGAAACAGGTCAACCAAGACCTCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp TGGGCTGCAGCTGAAGCCCCAAGGGCAAACAGTGACAGGGAAGTGGGTGCTTACGGTGTGCGGGAGGTCTaGGTTCCACTCCTCGAACTG +
Preference number: 4 (lower is better)
Translates to: WAAAEAPRANSDREVGAYGVREV*VPLLEL
Trigger: CAGTTCGAGGAGTGGAACCCAGACCTCCCGCACACC...GTAAGCACCCACTTCCCTGTCACTGTTTGCCCTTGGGGCTTCAGCTGCAGCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR CAA 72 bp GTGCCCTCAACTGCCCAGCTTGGACAGCACTCAGCCTaGTCCGGCGCCCACTCCAGGACAGACATCTTCATT +
Preference number: 4 (lower is better)
Translates to: VPSTAQLGQHSA*SGAHSRTDIFI
Trigger: AATGAAGATGTCTGTCCTGGAGTGGGCGCCGGACAAGGCTGAGTGCTGTCCAAGCTGGGCAGTTGAGGGCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232437.2
CDS-3UTR TCA 90 bp AACACATCACTGACCGAGCCCTGCAGGGTCCCGTGCAGCATCAAGAGGCCCCTGCCCAGAAGCTATCTGTaGTCTCCTCTGAGGCCTCAT +
Preference number: 4 (lower is better)
Translates to: NTSLTEPCRVPCSIKRPLPRSYL*SPLRPH
Trigger: ATGAGGCCTCAGAGGAGATCACAGATAGCTTCTGGG...CAGGGGCCTCTTGATGCTGCACGGGACCCTGCAGGGCTCGGTCAGTGATGTGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR TCA 90 bp GTCCATGACCTGAGTGTCAGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAAGAGGACCTTTCTCGATaGGCTGGCGCCAGCGCTTGG +
Preference number: 4 (lower is better)
Translates to: VHDLSVRRSSRELKGPGEEDLSR*AGASAW
Trigger: CCAAGCGCTGGCGCCAGCTCATCGAGAAAGGTCCTC...TTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCTGACACTCAGGTCATGGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR TCA 90 bp CAGGTAGGGGTCTGGAAATGGCGGGAAGGGGTGTGGTCCAGCCCAAGGTTTGAGCCTGGTGCAGCTCGCTaGCCTTATCTGCTTCTGTCA +
Preference number: 4 (lower is better)
Translates to: QVGVWKWREGVWSSPRFEPGAAR*PYLLLS
Trigger: TGACAGAAGCAGATAAGGTCAGCGAGCTGCACCAGG...CTCAAACCTTGGGCTGGACCACACCCCTTCCCGCCATTTCCAGACCCCTACCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR TCA 90 bp CAAGGTTTGAGGTGCCCTAACACCAGGAATCACAGGTGGGGCTCTGCTCCGGGCTCCGCTCTCATCGTCTaGCCACTCGGTGGCATATGT +
Preference number: 4 (lower is better)
Translates to: QGLRCPNTRNHRWGSAPGSALIV*PLGGIC
Trigger: ACATATGCCACCGAGTGGTCAGACGATGAGAGCGGA...GCCCGGAGCAGAGCCCCACCTGTGATTCCTGGTGTTAGGGCACCTCAAACCTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp TGCTTACAGCCCTGTCTCTTGAGTGCTAAGTTCCTGCTCCTGGCCCTGAGGGAGGGTGCCCATCGTCGATaGGCTTCACCGTCCGCTTGT +
Preference number: 4 (lower is better)
Translates to: CLQPCLLSAKFLLLALREGAHRR*ASPSAC
Trigger: ACAAGCGGACGGTGAAGCGCATCGACGATGGGCACC...CTCCCTCAGGGCCAGGAGCAGGAACTTAGCACTCAAGAGACAGGGCTGTAAGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp TGGGCTGCAGCTGAAGCCCCAAGGGCAAACAGTGACAGGGAAGTGGGTGCTTACTTCTTGGCAGTGGTGTaGGGGAGGTCTGGGTTCCAC +
Preference number: 4 (lower is better)
Translates to: WAAAEAPRANSDREVGAYFLAVV*GRSGFH
Trigger: GTGGAACCCAGACCTCCCGCACACCACTGCCAAGAA...GTAAGCACCCACTTCCCTGTCACTGTTTGCCCTTGGGGCTTCAGCTGCAGCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp GACCCCAAAGCTTGGGTCCATGACCTGAGTGTCAGGAGAAGCAGCAGAGAGCTACCTTTCTCGATGAGCTaGCGCCAGCGCTTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: DPKAWVHDLSVRRSSRELPFSMS*RQRLAQ
Trigger: CTGGGCCAAGCGCTGGCGCCAGCTCATCGAGAAAGG...TAGCTCTCTGCTGCTTCTCCTGACACTCAGGTCATGGACCCAAGCTTTGGGGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp AGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAACATGGATGGTGGTCCTGTCCTTTCTCGATGAGCTaGCGCCAGCGCTTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: RRSSRELKGPGEHGWWSCPFSMS*RQRLAQ
Trigger: CTGGGCCAAGCGCTGGCGCCAGCTCATCGAGAAAGG...ACAGGACCACCATCCATGTTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp TGCTTACAGCCCTGTCTCTTGAGTGCTAAGTTCCTGCTCCTGGCCCTGAGGGAGCCCCAGCCTGGGATGTaGATTCTACAGCCCCAGTGG +
Preference number: 4 (lower is better)
Translates to: CLQPCLLSAKFLLLALREPQPGM*ILQPQW
Trigger: CCACTGGGGCTGTAGAATCCACATCCCAGGCTGGGG...CTCCCTCAGGGCCAGGAGCAGGAACTTAGCACTCAAGAGACAGGGCTGTAAGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR TCA 90 bp CAGGTAGGGGTCTGGAAATGGCGGGAAGGGGTGTGGTCCAGCCCAAGGTTTGAGCCCAGAAGCTATCTGTaGTCTCCTCTGAGGCCTCAT +
Preference number: 4 (lower is better)
Translates to: QVGVWKWREGVWSSPRFEPRSYL*SPLRPH
Trigger: ATGAGGCCTCAGAGGAGATCACAGATAGCTTCTGGG...CTCAAACCTTGGGCTGGACCACACCCCTTCCCGCCATTTCCAGACCCCTACCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp AAGAGGTCTTGGTTGACCTGTTTCGTTTCCCACCCCATCCTCCCAAGGGAGAGCATCTTGGCGCGCTCCTaGACGCAGCTCATGAGGTCG +
Preference number: 4 (lower is better)
Translates to: KRSWLTCFVSHPILPRESILARS*TQLMRS
Trigger: CGACCTCATGAGCTGCGTGCAGGAGCGCGCCAAGAT...GCTCTCCCTTGGGAGGATGGGGTGGGAAACGAAACAGGTCAACCAAGACCTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp AGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAACATGGATGGTGGTCCTGTGAGCTGCTGCGCGTATaGCTTCTCGATCTTGGCGCG +
Preference number: 4 (lower is better)
Translates to: RRSSRELKGPGEHGWWSCELLRV*LLDLGA
Trigger: CGCGCCAAGATCGAGAAGGCATACGCGCAGCAGCTC...ACAGGACCACCATCCATGTTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp CAAGGTTTGAGGTGCCCTAACACCAGGAATCACAGGTGGGGCTCTGCTCCGGGCACTGTGGTGTGGTCTTaGCCACATCTTCCAGCACCT +
Preference number: 4 (lower is better)
Translates to: QGLRCPNTRNHRWGSAPGTVVWS*PHLPAP
Trigger: AGGTGCTGGAAGATGTGGGCAAGACCACACCACAGT...GCCCGGAGCAGAGCCCCACCTGTGATTCCTGGTGTTAGGGCACCTCAAACCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp GCTTTGCCCTGGACTTTCCAAGGAAGAGGCTTTGCCCATTGCCAAGGACTAAAGACTGCGGCCAGTTCATaGGCATCCCGGGGCCACTGG +
Preference number: 4 (lower is better)
Translates to: ALPWTFQGRGFAHCQGLKTAASS*ASRGHW
Trigger: CCAGTGGCCCCGGGATGCCCATGAACTGGCCGCAGT...CTTTAGTCCTTGGCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp GGCACAGCCTGGTCAGATGGTCTGTTCTCCTTCTTCCTCTCCTGTATGCCAGGGATTCTACAGCCCCAGTaGCATTGCTCAGGGTGGCCC +
Preference number: 4 (lower is better)
Translates to: GTAWSDGLFSFFLSCMPGILQPQ*HCSGWP
Trigger: GGGCCACCCTGAGCAATGCCACTGGGGCTGTAGAAT...CCCTGGCATACAGGAGAGGAAGAAGGAGAACAGACCATCTGACCAGGCTGTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp CAGGTAGGGGTCTGGAAATGGCGGGAAGGGGTGTGGTCCAGCCCAAGGTTTGAGGTACACGAACTCCCTTaGCATCATCCTCGAAGGGGT +
Preference number: 4 (lower is better)
Translates to: QVGVWKWREGVWSSPRFEVHELP*HHPRRG
Trigger: ACCCCTTCGAGGATGATGCCAAGGGAGTTCGTGTAC...CTCAAACCTTGGGCTGGACCACACCCCTTCCCGCCATTTCCAGACCCCTACCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp CTACTGTTGCTGGCTTTGCCCTGGACTTTCCAAGGAAGAGGCTTTGCCCATTGCATCTTGGCGCGCTCCTaGACGCAGCTCATGAGGTCG +
Preference number: 4 (lower is better)
Translates to: LLLLALPWTFQGRGFAHCILARS*TQLMRS
Trigger: CGACCTCATGAGCTGCGTGCAGGAGCGCGCCAAGAT...GCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGCCAGCAACAGTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp GCTTTGCCCTGGACTTTCCAAGGAAGAGGCTTTGCCCATTGCCAAGGACTAAAGGCCCAGTCGGTGAGCTaGTGCGCGTATGCCTTCTCG +
Preference number: 4 (lower is better)
Translates to: ALPWTFQGRGFAHCQGLKAQSVS*CAYAFS
Trigger: CGAGAAGGCATACGCGCAGCAGCTCACCGACTGGGC...CTTTAGTCCTTGGCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp AGCTCCTCCTGGAACCAGGTCGCTGGATGGCGGTTAACTGGGGACAAAACACATTTCTTGGCAGTGGTGTaGGGGAGGTCTGGGTTCCAC +
Preference number: 4 (lower is better)
Translates to: SSSWNQVAGWRLTGDKTHFLAVV*GRSGFH
Trigger: GTGGAACCCAGACCTCCCGCACACCACTGCCAAGAA...ATGTGTTTTGTCCCCAGTTAACCGCCATCCAGCGACCTGGTTCCAGGAGGAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp AAGAGGTCTTGGTTGACCTGTTTCGTTTCCCACCCCATCCTCCCAAGGGAGAGCCAGGGTGGCCCCCTCTaGCTTCTTAGGCTGTTTCTC +
Preference number: 4 (lower is better)
Translates to: KRSWLTCFVSHPILPRESQGGPL*LLRLFL
Trigger: GAGAAACAGCCTAAGAAGGCAGAGGGGGCCACCCTG...GCTCTCCCTTGGGAGGATGGGGTGGGAAACGAAACAGGTCAACCAAGACCTCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp TGCTTACAGCCCTGTCTCTTGAGTGCTAAGTTCCTGCTCCTGGCCCTGAGGGAGTCATCTCCCGGGTCATaGCCAGCCTTTCCTCCTTAC +
Preference number: 4 (lower is better)
Translates to: CLQPCLLSAKFLLLALRESSPGS*PAFPPY
Trigger: GTAAGGAGGAAAGGCTGGCCATGACCCGGGAGATGA...CTCCCTCAGGGCCAGGAGCAGGAACTTAGCACTCAAGAGACAGGGCTGTAAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp TTGCTGGCTTTGCCCTGGACTTTCCAAGGAAGAGGCTTTGCCCATTGCCAAGGAGGTGTGCGGGAGGTCTaGGTTCCACTCCTCGAACTG +
Preference number: 4 (lower is better)
Translates to: LLALPWTFQGRGFAHCQGGVREV*VPLLEL
Trigger: CAGTTCGAGGAGTGGAACCCAGACCTCCCGCACACC...TCCTTGGCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGCCAGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp TGGGCTGCAGCTGAAGCCCCAAGGGCAAACAGTGACAGGGAAGTGGGTGCTTACGTACACGAACTCCCTTaGCATCATCCTCGAAGGGGT +
Preference number: 4 (lower is better)
Translates to: WAAAEAPRANSDREVGAYVHELP*HHPRRG
Trigger: ACCCCTTCGAGGATGATGCCAAGGGAGTTCGTGTAC...GTAAGCACCCACTTCCCTGTCACTGTTTGCCCTTGGGGCTTCAGCTGCAGCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR CAA 72 bp ATGCCTCCTCCCCAGAGTGAGAGGAGGTTGCTACTGTaGCTGGCTTTGCCCTGGACTTTCCAAGGAAGAGGC +
Preference number: 4 (lower is better)
Translates to: MPPPQSERRLLL*LALPWTFQGRG
Trigger: GCCTCTTCCTTGGAAAGTCCAGGGCAAAGCCAGCAACAGTAGCAACCTCCTCTCACTCTGGGGAGGAGGCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR TCA 90 bp GGCACAGCCTGGTCAGATGGTCTGTTCTCCTTCTTCCTCTCCTGTATGCCAGGGCCCAGAAGCTATCTGTaGTCTCCTCTGAGGCCTCAT +
Preference number: 4 (lower is better)
Translates to: GTAWSDGLFSFFLSCMPGPRSYL*SPLRPH
Trigger: ATGAGGCCTCAGAGGAGATCACAGATAGCTTCTGGG...CCCTGGCATACAGGAGAGGAAGAAGGAGAACAGACCATCTGACCAGGCTGTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR TCA 90 bp TCCTCCCAAGGGAGAGCCTGCCACCTGCTTCCCAACCACAAGGGCCCTGTGTCCTTCTCATACTTCTCCTaGGTCTTTTGCACATCCTGT +
Preference number: 4 (lower is better)
Translates to: SSQGRACHLLPNHKGPVSFSYFS*VFCTSC
Trigger: ACAGGATGTGCAAAAGACTCAGGAGAAGTATGAGAA...GGACACAGGGCCCTTGTGGTTGGGAAGCAGGTGGCAGGCTCTCCCTTGGGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR TCA 90 bp GACCCCAAAGCTTGGGTCCATGACCTGAGTGTCAGGAGAAGCAGCAGAGAGCTATCCGCTCTCATCGTCTaGCCACTCGGTGGCATATGT +
Preference number: 4 (lower is better)
Translates to: DPKAWVHDLSVRRSSRELSALIV*PLGGIC
Trigger: ACATATGCCACCGAGTGGTCAGACGATGAGAGCGGA...TAGCTCTCTGCTGCTTCTCCTGACACTCAGGTCATGGACCCAAGCTTTGGGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp GCACGTCTCGGAGTTTCACAAGTGTCGGAACTAATGATGTCTGAAAGCCTAGGGGCCCAGTCGGTGAGCTaGTGCGCGTATGCCTTCTCG +
Preference number: 4 (lower is better)
Translates to: ARLGVSQVSELMMSESLGAQSVS*CAYAFS
Trigger: CGAGAAGGCATACGCGCAGCAGCTCACCGACTGGGC...CCCTAGGCTTTCAGACATCATTAGTTCCGACACTTGTGAAACTCCGAGACGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp GAGGACCCTCCTGCACTGGGGGTGCTGAATAACTTGAGGACCAAGTCTGGTCCCCCATGTACTGTGGTGTaGTCTTGCCCACATCTTCCA +
Preference number: 4 (lower is better)
Translates to: EDPPALGVLNNLRTKSGPPCTVV*SCPHLP
Trigger: TGGAAGATGTGGGCAAGACCACACCACAGTACATGG...GGGACCAGACTTGGTCCTCAAGTTATTCAGCACCCCCAGTGCAGGAGGGTCCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp AAGAGGTCTTGGTTGACCTGTTTCGTTTCCCACCCCATCCTCCCAAGGGAGAGCGCCCTCCATGTACTGTaGTGTGGTCTTGCCCACATC +
Preference number: 4 (lower is better)
Translates to: KRSWLTCFVSHPILPRESALHVL*CGLAHI
Trigger: GATGTGGGCAAGACCACACCACAGTACATGGAGGGC...GCTCTCCCTTGGGAGGATGGGGTGGGAAACGAAACAGGTCAACCAAGACCTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp GGGACTAAAAGGTCAAGGAAGAAAGCTACAGTGACCATCCAGAGTTCCTTCCTCACTGCGGCCAGTTCATaGGCATCCCGGGGCCACTGG +
Preference number: 4 (lower is better)
Translates to: GTKRSRKKATVTIQSSFLTAASS*ASRGHW
Trigger: CCAGTGGCCCCGGGATGCCCATGAACTGGCCGCAGT...GAGGAAGGAACTCTGGATGGTCACTGTAGCTTTCTTCCTTGACCTTTTAGTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp GACCCCAAAGCTTGGGTCCATGACCTGAGTGTCAGGAGAAGCAGCAGAGAGCTAGCTGTTTCTCCTTCTTaGCAGTGGTGTGCGGGAGGT +
Preference number: 4 (lower is better)
Translates to: DPKAWVHDLSVRRSSRELAVSPS*QWCAGG
Trigger: ACCTCCCGCACACCACTGCCAAGAAGGAGAAACAGC...TAGCTCTCTGCTGCTTCTCCTGACACTCAGGTCATGGACCCAAGCTTTGGGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp GTCCATGACCTGAGTGTCAGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAACGTCTGACCACTCGGTaGCATATGTTTGGCCTCGGT +
Preference number: 4 (lower is better)
Translates to: VHDLSVRRSSRELKGPGERLTTR*HMFGLG
Trigger: ACCGAGGCCAAACATATGCCACCGAGTGGTCAGACG...TTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCTGACACTCAGGTCATGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp AAGAGGTCTTGGTTGACCTGTTTCGTTTCCCACCCCATCCTCCCAAGGGAGAGCCGTCTGACCACTCGGTaGCATATGTTTGGCCTCGGT +
Preference number: 4 (lower is better)
Translates to: KRSWLTCFVSHPILPRESRLTTR*HMFGLG
Trigger: ACCGAGGCCAAACATATGCCACCGAGTGGTCAGACG...GCTCTCCCTTGGGAGGATGGGGTGGGAAACGAAACAGGTCAACCAAGACCTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp GGCACAGCCTGGTCAGATGGTCTGTTCTCCTTCTTCCTCTCCTGTATGCCAGGGGTACACGAACTCCCTTaGCATCATCCTCGAAGGGGT +
Preference number: 4 (lower is better)
Translates to: GTAWSDGLFSFFLSCMPGVHELP*HHPRRG
Trigger: ACCCCTTCGAGGATGATGCCAAGGGAGTTCGTGTAC...CCCTGGCATACAGGAGAGGAAGAAGGAGAACAGACCATCTGACCAGGCTGTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR CAA 72 bp CCCCAGAGTGAGAGGAGGTTGCTACTGTTGCTGGCTTaGCCCTGGACTTTCCAAGGAAGAGGCTTTGCCCAT +
Preference number: 4 (lower is better)
Translates to: PQSERRLLLLLA*PWTFQGRGFAH
Trigger: ATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGCCAGCAACAGTAGCAACCTCCTCTCACTCTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR TCA 90 bp CTACTGTTGCTGGCTTTGCCCTGGACTTTCCAAGGAAGAGGCTTTGCCCATTGCTCCGCTCTCATCGTCTaGCCACTCGGTGGCATATGT +
Preference number: 4 (lower is better)
Translates to: LLLLALPWTFQGRGFAHCSALIV*PLGGIC
Trigger: ACATATGCCACCGAGTGGTCAGACGATGAGAGCGGA...GCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGCCAGCAACAGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp AGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAACATGGATGGTGGTCCTGTACTGTGGTGTGGTCTTaGCCACATCTTCCAGCACCT +
Preference number: 4 (lower is better)
Translates to: RRSSRELKGPGEHGWWSCTVVWS*PHLPAP
Trigger: AGGTGCTGGAAGATGTGGGCAAGACCACACCACAGT...ACAGGACCACCATCCATGTTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp CCACACCCAGAATCCTTTAATGAAGACTCAAGACTCTCGGGCTTAGAGAAATGGCAGCCCCAGTGGCATTaGTCAGGGTGGCCCCCTCTG +
Preference number: 4 (lower is better)
Translates to: PHPESFNEDSRLSGLEKWQPQWH*SGWPPL
Trigger: CAGAGGGGGCCACCCTGAGCAATGCCACTGGGGCTG...CCATTTCTCTAAGCCCGAGAGTCTTGAGTCTTCATTAAAGGATTCTGGGTGTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp CTACTGTTGCTGGCTTTGCCCTGGACTTTCCAAGGAAGAGGCTTTGCCCATTGCGCTGTTTCTCCTTCTTaGCAGTGGTGTGCGGGAGGT +
Preference number: 4 (lower is better)
Translates to: LLLLALPWTFQGRGFAHCAVSPS*QWCAGG
Trigger: ACCTCCCGCACACCACTGCCAAGAAGGAGAAACAGC...GCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGCCAGCAACAGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR CAA 72 bp CAGCCTCTGACCACTTTCCACTGTAAGAGGTCTTGGTaGACCTGTTTCGTTTCCCACCCCATCCTCCCAAGG +
Preference number: 4 (lower is better)
Translates to: QPLTTFHCKRSW*TCFVSHPILPR
Trigger: CCTTGGGAGGATGGGGTGGGAAACGAAACAGGTCAACCAAGACCTCTTACAGTGGAAAGTGGTCAGAGGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp GCACGTCTCGGAGTTTCACAAGTGTCGGAACTAATGATGTCTGAAAGCCTAGGGACGCCCGCTCCAGGCTaGCATACTGAGGACCTTTCT +
Preference number: 4 (lower is better)
Translates to: ARLGVSQVSELMMSESLGTPAPG*HTEDLS
Trigger: AGAAAGGTCCTCAGTATGGCAGCCTGGAGCGGGCGT...CCCTAGGCTTTCAGACATCATTAGTTCCGACACTTGTGAAACTCCGAGACGTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp GTCCATGACCTGAGTGTCAGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAATTCTTCACCTCCTGGTaGAGCTCGCTGACCTTATCT +
Preference number: 4 (lower is better)
Translates to: VHDLSVRRSSRELKGPGEFFTSW*SSLTLS
Trigger: AGATAAGGTCAGCGAGCTGCACCAGGAGGTGAAGAA...TTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCTGACACTCAGGTCATGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp GACCCCAAAGCTTGGGTCCATGACCTGAGTGTCAGGAGAAGCAGCAGAGAGCTATTCTTCACCTCCTGGTaGAGCTCGCTGACCTTATCT +
Preference number: 4 (lower is better)
Translates to: DPKAWVHDLSVRRSSRELFFTSW*SSLTLS
Trigger: AGATAAGGTCAGCGAGCTGCACCAGGAGGTGAAGAA...TAGCTCTCTGCTGCTTCTCCTGACACTCAGGTCATGGACCCAAGCTTTGGGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp GCTTTGCCCTGGACTTTCCAAGGAAGAGGCTTTGCCCATTGCCAAGGACTAAAGTCATCTCCCGGGTCATaGCCAGCCTTTCCTCCTTAC +
Preference number: 4 (lower is better)
Translates to: ALPWTFQGRGFAHCQGLKSSPGS*PAFPPY
Trigger: GTAAGGAGGAAAGGCTGGCCATGACCCGGGAGATGA...CTTTAGTCCTTGGCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp AGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAACATGGATGGTGGTCCTGTCCATGTACTGTGGTGTaGTCTTGCCCACATCTTCCA +
Preference number: 4 (lower is better)
Translates to: RRSSRELKGPGEHGWWSCPCTVV*SCPHLP
Trigger: TGGAAGATGTGGGCAAGACCACACCACAGTACATGG...ACAGGACCACCATCCATGTTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp GCTTTGCCCTGGACTTTCCAAGGAAGAGGCTTTGCCCATTGCCAAGGACTAAAGCGTCTGACCACTCGGTaGCATATGTTTGGCCTCGGT +
Preference number: 4 (lower is better)
Translates to: ALPWTFQGRGFAHCQGLKRLTTR*HMFGLG
Trigger: ACCGAGGCCAAACATATGCCACCGAGTGGTCAGACG...CTTTAGTCCTTGGCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp GAGGACCCTCCTGCACTGGGGGTGCTGAATAACTTGAGGACCAAGTCTGGTCCCTTTGCACATCCTGTCTaGATTTGTCCACTTTGTCCA +
Preference number: 4 (lower is better)
Translates to: EDPPALGVLNNLRTKSGPFAHPV*ICPLCP
Trigger: TGGACAAAGTGGACAAATGCAGACAGGATGTGCAAA...GGGACCAGACTTGGTCCTCAAGTTATTCAGCACCCCCAGTGCAGGAGGGTCCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp GGGACTAAAAGGTCAAGGAAGAAAGCTACAGTGACCATCCAGAGTTCCTTCCTCCAGGGTGGCCCCCTCTaGCTTCTTAGGCTGTTTCTC +
Preference number: 4 (lower is better)
Translates to: GTKRSRKKATVTIQSSFLQGGPL*LLRLFL
Trigger: GAGAAACAGCCTAAGAAGGCAGAGGGGGCCACCCTG...GAGGAAGGAACTCTGGATGGTCACTGTAGCTTTCTTCCTTGACCTTTTAGTCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp GGGACTAAAAGGTCAAGGAAGAAAGCTACAGTGACCATCCAGAGTTCCTTCCTCTCTCCTTCTTGGCAGTaGTGTGCGGGAGGTCTGGGT +
Preference number: 4 (lower is better)
Translates to: GTKRSRKKATVTIQSSFLSPSWQ*CAGGLG
Trigger: ACCCAGACCTCCCGCACACCACTGCCAAGAAGGAGA...GAGGAAGGAACTCTGGATGGTCACTGTAGCTTTCTTCCTTGACCTTTTAGTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR TCA 90 bp TGCTTACAGCCCTGTCTCTTGAGTGCTAAGTTCCTGCTCCTGGCCCTGAGGGAGTTCTCATACTTCTCCTaGGTCTTTTGCACATCCTGT +
Preference number: 4 (lower is better)
Translates to: CLQPCLLSAKFLLLALREFSYFS*VFCTSC
Trigger: ACAGGATGTGCAAAAGACTCAGGAGAAGTATGAGAA...CTCCCTCAGGGCCAGGAGCAGGAACTTAGCACTCAAGAGACAGGGCTGTAAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp TGCTTACAGCCCTGTCTCTTGAGTGCTAAGTTCCTGCTCCTGGCCCTGAGGGAGTTTGCACATCCTGTCTaGATTTGTCCACTTTGTCCA +
Preference number: 4 (lower is better)
Translates to: CLQPCLLSAKFLLLALREFAHPV*ICPLCP
Trigger: TGGACAAAGTGGACAAATGCAGACAGGATGTGCAAA...CTCCCTCAGGGCCAGGAGCAGGAACTTAGCACTCAAGAGACAGGGCTGTAAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp GGGACTAAAAGGTCAAGGAAGAAAGCTACAGTGACCATCCAGAGTTCCTTCCTCGCCCTCCATGTACTGTaGTGTGGTCTTGCCCACATC +
Preference number: 4 (lower is better)
Translates to: GTKRSRKKATVTIQSSFLALHVL*CGLAHI
Trigger: GATGTGGGCAAGACCACACCACAGTACATGGAGGGC...GAGGAAGGAACTCTGGATGGTCACTGTAGCTTTCTTCCTTGACCTTTTAGTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp CCACACCCAGAATCCTTTAATGAAGACTCAAGACTCTCGGGCTTAGAGAAATGGTCTCCTTCTTGGCAGTaGTGTGCGGGAGGTCTGGGT +
Preference number: 4 (lower is better)
Translates to: PHPESFNEDSRLSGLEKWSPSWQ*CAGGLG
Trigger: ACCCAGACCTCCCGCACACCACTGCCAAGAAGGAGA...CCATTTCTCTAAGCCCGAGAGTCTTGAGTCTTCATTAAAGGATTCTGGGTGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp GGGACTAAAAGGTCAAGGAAGAAAGCTACAGTGACCATCCAGAGTTCCTTCCTCGCTGTTTCTCCTTCTTaGCAGTGGTGTGCGGGAGGT +
Preference number: 4 (lower is better)
Translates to: GTKRSRKKATVTIQSSFLAVSPS*QWCAGG
Trigger: ACCTCCCGCACACCACTGCCAAGAAGGAGAAACAGC...GAGGAAGGAACTCTGGATGGTCACTGTAGCTTTCTTCCTTGACCTTTTAGTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp ATGTTGGGGACTAAAAGGTCAAGGAAGAAAGCTACAGTGACCATCCAGAGTTCCATTCTACAGCCCCAGTaGCATTGCTCAGGGTGGCCC +
Preference number: 4 (lower is better)
Translates to: MLGTKRSRKKATVTIQSSILQPQ*HCSGWP
Trigger: GGGCCACCCTGAGCAATGCCACTGGGGCTGTAGAAT...GGAACTCTGGATGGTCACTGTAGCTTTCTTCCTTGACCTTTTAGTCCCCAACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR CAA 72 bp TTTGCCCTGGACTTTCCAAGGAAGAGGCTTTGCCCATaGCCAAGGACTAAAGAGACAGGTAGGGTCTCTGCA +
Preference number: 4 (lower is better)
Translates to: FALDFPRKRLCP*PRTKETGRVSA
Trigger: TGCAGAGACCCTACCTGTCTCTTTAGTCCTTGGCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
3UTR CAA 72 bp TCTGACTCTCCTGGTCAATGCTATGAGAGTCGCATATaGTATCTGAGGCCAGAACCTCAGTGGCGTCCCTCA +
Preference number: 4 (lower is better)
Translates to: SDSPGQCYESRI*YLRPEPQWRPS
Trigger: TGAGGGACGCCACTGAGGTTCTGGCCTCAGATACAATATGCGACTCTCATAGCATTGACCAGGAGAGTCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp GACCCCAAAGCTTGGGTCCATGACCTGAGTGTCAGGAGAAGCAGCAGAGAGCTATTTGCACATCCTGTCTaGATTTGTCCACTTTGTCCA +
Preference number: 4 (lower is better)
Translates to: DPKAWVHDLSVRRSSRELFAHPV*ICPLCP
Trigger: TGGACAAAGTGGACAAATGCAGACAGGATGTGCAAA...TAGCTCTCTGCTGCTTCTCCTGACACTCAGGTCATGGACCCAAGCTTTGGGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp AATTACACAATCATGTATAAAACAGGTGCATTGCTGAGACCACGGCACGTCTCGTTCTTGGCAGTGGTGTaGGGGAGGTCTGGGTTCCAC +
Preference number: 4 (lower is better)
Translates to: NYTIMYKTGALLRPRHVSFLAVV*GRSGFH
Trigger: GTGGAACCCAGACCTCCCGCACACCACTGCCAAGAA...CGAGACGTGCCGTGGTCTCAGCAATGCACCTGTTTTATACATGATTGTGTAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp AATTACACAATCATGTATAAAACAGGTGCATTGCTGAGACCACGGCACGTCTCGCAGGGTGGCCCCCTCTaGCTTCTTAGGCTGTTTCTC +
Preference number: 4 (lower is better)
Translates to: NYTIMYKTGALLRPRHVSQGGPL*LLRLFL
Trigger: GAGAAACAGCCTAAGAAGGCAGAGGGGGCCACCCTG...CGAGACGTGCCGTGGTCTCAGCAATGCACCTGTTTTATACATGATTGTGTAATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CCA 90 bp ATGTTGGGGACTAAAAGGTCAAGGAAGAAAGCTACAGTGACCATCCAGAGTTCCGCCCTCCATGTACTGTaGTGTGGTCTTGCCCACATC +
Preference number: 4 (lower is better)
Translates to: MLGTKRSRKKATVTIQSSALHVL*CGLAHI
Trigger: GATGTGGGCAAGACCACACCACAGTACATGGAGGGC...GGAACTCTGGATGGTCACTGTAGCTTTCTTCCTTGACCTTTTAGTCCCCAACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR TCA 90 bp AATTACACAATCATGTATAAAACAGGTGCATTGCTGAGACCACGGCACGTCTCGCCTGGTGCAGCTCGCTaGCCTTATCTGCTTCTGTCA +
Preference number: 4 (lower is better)
Translates to: NYTIMYKTGALLRPRHVSPGAAR*PYLLLS
Trigger: TGACAGAAGCAGATAAGGTCAGCGAGCTGCACCAGG...CGAGACGTGCCGTGGTCTCAGCAATGCACCTGTTTTATACATGATTGTGTAATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR GCA 90 bp GGGACTAAAAGGTCAAGGAAGAAAGCTACAGTGACCATCCAGAGTTCCTTCCTCTTCTTCACCTCCTGGTaGAGCTCGCTGACCTTATCT +
Preference number: 4 (lower is better)
Translates to: GTKRSRKKATVTIQSSFLFFTSW*SSLTLS
Trigger: AGATAAGGTCAGCGAGCTGCACCAGGAGGTGAAGAA...GAGGAAGGAACTCTGGATGGTCACTGTAGCTTTCTTCCTTGACCTTTTAGTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR TCA 90 bp GGGACTAAAAGGTCAAGGAAGAAAGCTACAGTGACCATCCAGAGTTCCTTCCTCTTCTCATACTTCTCCTaGGTCTTTTGCACATCCTGT +
Preference number: 4 (lower is better)
Translates to: GTKRSRKKATVTIQSSFLFSYFS*VFCTSC
Trigger: ACAGGATGTGCAAAAGACTCAGGAGAAGTATGAGAA...GAGGAAGGAACTCTGGATGGTCACTGTAGCTTTCTTCCTTGACCTTTTAGTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp AACACATCACTGACCGAGCCCTGCAGGGTCCCGTGCAGCATCAAGAGGCCCCTGAGCTGGCGCCAGCGCTaGGCCCAGTCGGTGAGCTGC +
Preference number: 5 (lower is better)
Translates to: NTSLTEPCRVPCSIKRPLSWRQR*AQSVSC
Trigger: GCAGCTCACCGACTGGGCCAAGCGCTGGCGCCAGCT...CAGGGGCCTCTTGATGCTGCACGGGACCCTGCAGGGCTCGGTCAGTGATGTGTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp GGAAATGGCGGGAAGGGGTGTGGTCCAGCCCAAGGTTTGAGGTGCCCTAACACCGGGTTGGCGCCACCATaGGCCTCATTGCCCCCGAAG +
Preference number: 5 (lower is better)
Translates to: GNGGKGCGPAQGLRCPNTGLAPP*ASLPPK
Trigger: CTTCGGGGGCAATGAGGCCAATGGTGGCGCCAACCC...GGTGTTAGGGCACCTCAAACCTTGGGCTGGACCACACCCCTTCCCGCCATTTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp GGAAATGGCGGGAAGGGGTGTGGTCCAGCCCAAGGTTTGAGGTGCCCTAACACCGGCTGTTTCTCCTTCTaGGCAGTGGTGTGCGGGAGG +
Preference number: 5 (lower is better)
Translates to: GNGGKGCGPAQGLRCPNTGCFSF*AVVCGR
Trigger: CCTCCCGCACACCACTGCCAAGAAGGAGAAACAGCC...GGTGTTAGGGCACCTCAAACCTTGGGCTGGACCACACCCCTTCCCGCCATTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS GCA 90 bp GCCCCCTCTGCCTTCTTAGGCTGTTTCTCCTTCTTGGCAGTGGTGTaGGGGAGGTCTGGGTTCCACTCCTCGAACTGCGGCCAGTTCATG +
Preference number: 5 (lower is better)
Translates to: APSAFLGCFSFLAVV*GRSGFHSSNCGQFM
Trigger: CATGAACTGGCCGCAGTTCGAGGAGTGGAACCCAGACCTCCCGCACACCACTGCCAAGAAGGAGAAACAGCCTAAGAAGGCAGAGGGGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000045896.11
ENSMUST00000097360.3
ENSMUST00000114872.9
ENSMUST00000114873.8
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp GCTTTGCCCTGGACTTTCCAAGGAAGAGGCTTTGCCCATTGCCAAGGACTAAAGAGCTGGCGCCAGCGCTaGGCCCAGTCGGTGAGCTGC +
Preference number: 5 (lower is better)
Translates to: ALPWTFQGRGFAHCQGLKSWRQR*AQSVSC
Trigger: GCAGCTCACCGACTGGGCCAAGCGCTGGCGCCAGCT...CTTTAGTCCTTGGCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp AGCTCCTCCTGGAACCAGGTCGCTGGATGGCGGTTAACTGGGGACAAAACACATACAGCCCCAGTGGCATaGCTCAGGGTGGCCCCCTCT +
Preference number: 5 (lower is better)
Translates to: SSSWNQVAGWRLTGDKTHTAPVA*LRVAPS
Trigger: AGAGGGGGCCACCCTGAGCAATGCCACTGGGGCTGT...ATGTGTTTTGTCCCCAGTTAACCGCCATCCAGCGACCTGGTTCCAGGAGGAGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp AGCTCCTCCTGGAACCAGGTCGCTGGATGGCGGTTAACTGGGGACAAAACACATGGGTTGGCGCCACCATaGGCCTCATTGCCCCCGAAG +
Preference number: 5 (lower is better)
Translates to: SSSWNQVAGWRLTGDKTHGLAPP*ASLPPK
Trigger: CTTCGGGGGCAATGAGGCCAATGGTGGCGCCAACCC...ATGTGTTTTGTCCCCAGTTAACCGCCATCCAGCGACCTGGTTCCAGGAGGAGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS GCA 90 bp TGTGGATTCTACAGCCCCAGTGGCATTGCTCAGGGTGGCCCCCTCTaGCTTCTTAGGCTGTTTCTCCTTCTTGGCAGTGGTGTGCGGGAG +
Preference number: 5 (lower is better)
Translates to: CGFYSPSGIAQGGPL*LLRLFLLLGSGVRE
Trigger: CTCCCGCACACCACTGCCAAGAAGGAGAAACAGCCTAAGAAGGCAGAGGGGGCCACCCTGAGCAATGCCACTGGGGCTGTAGAATCCACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000045896.11
ENSMUST00000097360.3
ENSMUST00000114872.9
ENSMUST00000114873.8
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp AAGAGGTCTTGGTTGACCTGTTTCGTTTCCCACCCCATCCTCCCAAGGGAGAGCCAGCTCATGAGGTCGTaGCACAGGCGGTGCCCATCG +
Preference number: 5 (lower is better)
Translates to: KRSWLTCFVSHPILPRESQLMRS*HRRCPS
Trigger: CGATGGGCACCGCCTGTGCAACGACCTCATGAGCTG...GCTCTCCCTTGGGAGGATGGGGTGGGAAACGAAACAGGTCAACCAAGACCTCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp AGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAACATGGATGGTGGTCCTGTCAGCTCATGAGGTCGTaGCACAGGCGGTGCCCATCG +
Preference number: 5 (lower is better)
Translates to: RRSSRELKGPGEHGWWSCQLMRS*HRRCPS
Trigger: CGATGGGCACCGCCTGTGCAACGACCTCATGAGCTG...ACAGGACCACCATCCATGTTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp CAGGTAGGGGTCTGGAAATGGCGGGAAGGGGTGTGGTCCAGCCCAAGGTTTGAGGCCTCTTTCGTCTCCTaGAAGCCACCCATGATCTGC +
Preference number: 5 (lower is better)
Translates to: QVGVWKWREGVWSSPRFEASFVS*KPPMIC
Trigger: GCAGATCATGGGTGGCTTCAAGGAGACGAAAGAGGC...CTCAAACCTTGGGCTGGACCACACCCCTTCCCGCCATTTCCAGACCCCTACCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp TGCTTACAGCCCTGTCTCTTGAGTGCTAAGTTCCTGCTCCTGGCCCTGAGGGAGGGCTGTTTCTCCTTCTaGGCAGTGGTGTGCGGGAGG +
Preference number: 5 (lower is better)
Translates to: CLQPCLLSAKFLLLALREGCFSF*AVVCGR
Trigger: CCTCCCGCACACCACTGCCAAGAAGGAGAAACAGCC...CTCCCTCAGGGCCAGGAGCAGGAACTTAGCACTCAAGAGACAGGGCTGTAAGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp CTACTGTTGCTGGCTTTGCCCTGGACTTTCCAAGGAAGAGGCTTTGCCCATTGCACAGCCCCAGTGGCATaGCTCAGGGTGGCCCCCTCT +
Preference number: 5 (lower is better)
Translates to: LLLLALPWTFQGRGFAHCTAPVA*LRVAPS
Trigger: AGAGGGGGCCACCCTGAGCAATGCCACTGGGGCTGT...GCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGCCAGCAACAGTAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp GAGGACCCTCCTGCACTGGGGGTGCTGAATAACTTGAGGACCAAGTCTGGTCCCAGCTCATCTCCGGCCTaGAAGCTGAGCTCATCCTGC +
Preference number: 5 (lower is better)
Translates to: EDPPALGVLNNLRTKSGPSSSPA*KLSSSC
Trigger: GCAGGATGAGCTCAGCTTCAAGGCCGGAGATGAGCT...GGGACCAGACTTGGTCCTCAAGTTATTCAGCACCCCCAGTGCAGGAGGGTCCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp AGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAACATGGATGGTGGTCCTGTGGCTGTTTCTCCTTCTaGGCAGTGGTGTGCGGGAGG +
Preference number: 5 (lower is better)
Translates to: RRSSRELKGPGEHGWWSCGCFSF*AVVCGR
Trigger: CCTCCCGCACACCACTGCCAAGAAGGAGAAACAGCC...ACAGGACCACCATCCATGTTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS TCA 90 bp ACCATTGGCCTCATTGCCCCCGAAGGGGTTTCCGCTCTCATCGTCTaGCCACTCGGTGGCATATGTTTGGCCTCGGTCATAGCTGCTAAC +
Preference number: 5 (lower is better)
Translates to: TIGLIAPEGVSALIV*PLGGICLASVIAAN
Trigger: GTTAGCAGCTATGACCGAGGCCAAACATATGCCACCGAGTGGTCAGACGATGAGAGCGGAAACCCCTTCGGGGGCAATGAGGCCAATGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000045896.11
ENSMUST00000097360.3
ENSMUST00000114872.9
ENSMUST00000114873.8
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp CAGGTAGGGGTCTGGAAATGGCGGGAAGGGGTGTGGTCCAGCCCAAGGTTTGAGCTGTTCTCCGCTAGGTaGAGATGCCGTTTGATATCC +
Preference number: 5 (lower is better)
Translates to: QVGVWKWREGVWSSPRFELFSAR*RCRLIS
Trigger: GGATATCAAACGGCATCTCAACCTAGCGGAGAACAG...CTCAAACCTTGGGCTGGACCACACCCCTTCCCGCCATTTCCAGACCCCTACCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp GTCCATGACCTGAGTGTCAGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAAAGCTCATCTCCGGCCTaGAAGCTGAGCTCATCCTGC +
Preference number: 5 (lower is better)
Translates to: VHDLSVRRSSRELKGPGESSSPA*KLSSSC
Trigger: GCAGGATGAGCTCAGCTTCAAGGCCGGAGATGAGCT...TTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCTGACACTCAGGTCATGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp TTGCTGGCTTTGCCCTGGACTTTCCAAGGAAGAGGCTTTGCCCATTGCCAAGGATCTTCCTCTCCGAGCTaGGTGAGCTCATCTCCGGCC +
Preference number: 5 (lower is better)
Translates to: LLALPWTFQGRGFAHCQGSSSPS*VSSSPA
Trigger: GGCCGGAGATGAGCTCACCAAGCTCGGAGAGGAAGA...TCCTTGGCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGCCAGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp GCACGTCTCGGAGTTTCACAAGTGTCGGAACTAATGATGTCTGAAAGCCTAGGGCAGCTCATGAGGTCGTaGCACAGGCGGTGCCCATCG +
Preference number: 5 (lower is better)
Translates to: ARLGVSQVSELMMSESLGQLMRS*HRRCPS
Trigger: CGATGGGCACCGCCTGTGCAACGACCTCATGAGCTG...CCCTAGGCTTTCAGACATCATTAGTTCCGACACTTGTGAAACTCCGAGACGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp AGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAACATGGATGGTGGTCCTGTGCCTCTTTCGTCTCCTaGAAGCCACCCATGATCTGC +
Preference number: 5 (lower is better)
Translates to: RRSSRELKGPGEHGWWSCASFVS*KPPMIC
Trigger: GCAGATCATGGGTGGCTTCAAGGAGACGAAAGAGGC...ACAGGACCACCATCCATGTTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp GTCCATGACCTGAGTGTCAGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAAGCCTCTTTCGTCTCCTaGAAGCCACCCATGATCTGC +
Preference number: 5 (lower is better)
Translates to: VHDLSVRRSSRELKGPGEASFVS*KPPMIC
Trigger: GCAGATCATGGGTGGCTTCAAGGAGACGAAAGAGGC...TTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCTGACACTCAGGTCATGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp GCTTTGCCCTGGACTTTCCAAGGAAGAGGCTTTGCCCATTGCCAAGGACTAAAGTCTTCCTCTCCGAGCTaGGTGAGCTCATCTCCGGCC +
Preference number: 5 (lower is better)
Translates to: ALPWTFQGRGFAHCQGLKSSSPS*VSSSPA
Trigger: GGCCGGAGATGAGCTCACCAAGCTCGGAGAGGAAGA...CTTTAGTCCTTGGCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp GGAAATGGCGGGAAGGGGTGTGGTCCAGCCCAAGGTTTGAGGTGCCCTAACACCCTGCATTTGTCCACTTaGTCCACAAGTTTCTTCTGC +
Preference number: 5 (lower is better)
Translates to: GNGGKGCGPAQGLRCPNTLHLST*STSFFC
Trigger: GCAGAAGAAACTTGTGGACAAAGTGGACAAATGCAG...GGTGTTAGGGCACCTCAAACCTTGGGCTGGACCACACCCCTTCCCGCCATTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp CAGGTAGGGGTCTGGAAATGGCGGGAAGGGGTGTGGTCCAGCCCAAGGTTTGAGACATCCTGTCTGCATTaGTCCACTTTGTCCACAAGT +
Preference number: 5 (lower is better)
Translates to: QVGVWKWREGVWSSPRFETSCLH*STLSTS
Trigger: ACTTGTGGACAAAGTGGACAAATGCAGACAGGATGT...CTCAAACCTTGGGCTGGACCACACCCCTTCCCGCCATTTCCAGACCCCTACCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp ATGTTGGGGACTAAAAGGTCAAGGAAGAAAGCTACAGTGACCATCCAGAGTTCCACAGCCCCAGTGGCATaGCTCAGGGTGGCCCCCTCT +
Preference number: 5 (lower is better)
Translates to: MLGTKRSRKKATVTIQSSTAPVA*LRVAPS
Trigger: AGAGGGGGCCACCCTGAGCAATGCCACTGGGGCTGT...GGAACTCTGGATGGTCACTGTAGCTTTCTTCCTTGACCTTTTAGTCCCCAACAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS GCA 90 bp TCCACTTTGTCCACAAGTTTCTTCTGCTGTTCAGGGGTGACCGACTaGTCTGTCTTACTGTTCATCTCCCGGGTCATGGCCAGCCTTTCC +
Preference number: 5 (lower is better)
Translates to: STLSTSFFCCSGVTD*SVLLFISRVMASLS
Trigger: GGAAAGGCTGGCCATGACCCGGGAGATGAACAGTAAGACAGAGCAGTCGGTCACCCCTGAACAGCAGAAGAAACTTGTGGACAAAGTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000045896.11
ENSMUST00000097360.3
ENSMUST00000114872.9
ENSMUST00000114873.8
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp AAGAGGTCTTGGTTGACCTGTTTCGTTTCCCACCCCATCCTCCCAAGGGAGAGCCTGTTCTCCGCTAGGTaGAGATGCCGTTTGATATCC +
Preference number: 5 (lower is better)
Translates to: KRSWLTCFVSHPILPRESLFSAR*RCRLIS
Trigger: GGATATCAAACGGCATCTCAACCTAGCGGAGAACAG...GCTCTCCCTTGGGAGGATGGGGTGGGAAACGAAACAGGTCAACCAAGACCTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp ATGTTGGGGACTAAAAGGTCAAGGAAGAAAGCTACAGTGACCATCCAGAGTTCCTCTTCCTCTCCGAGCTaGGTGAGCTCATCTCCGGCC +
Preference number: 5 (lower is better)
Translates to: MLGTKRSRKKATVTIQSSSSSPS*VSSSPA
Trigger: GGCCGGAGATGAGCTCACCAAGCTCGGAGAGGAAGA...GGAACTCTGGATGGTCACTGTAGCTTTCTTCCTTGACCTTTTAGTCCCCAACAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS TCA 90 bp TGCATTTGTCCACTTTGTCCACAAGTTTCTTCTGCTGTTCAGGGGTaGCCGACTGCTCTGTCTTACTGTTCATCTCCCGGGTCATGGCCA +
Preference number: 5 (lower is better)
Translates to: CICPLCPQVSSAVQG*PTALSYCSSPGSWP
Trigger: TGGCCATGACCCGGGAGATGAACAGTAAGACAGAGCAGTCGGTCACCCCTGAACAGCAGAAGAAACTTGTGGACAAAGTGGACAAATGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000045896.11
ENSMUST00000097360.3
ENSMUST00000114872.9
ENSMUST00000114873.8
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp GACCCCAAAGCTTGGGTCCATGACCTGAGTGTCAGGAGAAGCAGCAGAGAGCTACTGCATTTGTCCACTTaGTCCACAAGTTTCTTCTGC +
Preference number: 5 (lower is better)
Translates to: DPKAWVHDLSVRRSSRELLHLST*STSFFC
Trigger: GCAGAAGAAACTTGTGGACAAAGTGGACAAATGCAG...TAGCTCTCTGCTGCTTCTCCTGACACTCAGGTCATGGACCCAAGCTTTGGGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp GACCCCAAAGCTTGGGTCCATGACCTGAGTGTCAGGAGAAGCAGCAGAGAGCTACTTCTCCTGAGTCTTTaGCACATCCTGTCTGCATTT +
Preference number: 5 (lower is better)
Translates to: DPKAWVHDLSVRRSSRELLLLSL*HILSAF
Trigger: AAATGCAGACAGGATGTGCAAAAGACTCAGGAGAAG...TAGCTCTCTGCTGCTTCTCCTGACACTCAGGTCATGGACCCAAGCTTTGGGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp AGGAGAAGCAGCAGAGAGCTAAAGGGTCCCGGAGAACATGGATGGTGGTCCTGTCTTCTCCTGAGTCTTTaGCACATCCTGTCTGCATTT +
Preference number: 5 (lower is better)
Translates to: RRSSRELKGPGEHGWWSCLLLSL*HILSAF
Trigger: AAATGCAGACAGGATGTGCAAAAGACTCAGGAGAAG...ACAGGACCACCATCCATGTTCTCCGGGACCCTTTAGCTCTCTGCTGCTTCTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp TTGCTGGCTTTGCCCTGGACTTTCCAAGGAAGAGGCTTTGCCCATTGCCAAGGACTGCATTTGTCCACTTaGTCCACAAGTTTCTTCTGC +
Preference number: 5 (lower is better)
Translates to: LLALPWTFQGRGFAHCQGLHLST*STSFFC
Trigger: GCAGAAGAAACTTGTGGACAAAGTGGACAAATGCAG...TCCTTGGCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGCCAGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp TTGCTGGCTTTGCCCTGGACTTTCCAAGGAAGAGGCTTTGCCCATTGCCAAGGAACATCCTGTCTGCATTaGTCCACTTTGTCCACAAGT +
Preference number: 5 (lower is better)
Translates to: LLALPWTFQGRGFAHCQGTSCLH*STLSTS
Trigger: ACTTGTGGACAAAGTGGACAAATGCAGACAGGATGT...TCCTTGGCAATGGGCAAAGCCTCTTCCTTGGAAAGTCCAGGGCAAAGCCAGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp AATTACACAATCATGTATAAAACAGGTGCATTGCTGAGACCACGGCACGTCTCGAGCTCATCTCCGGCCTaGAAGCTGAGCTCATCCTGC +
Preference number: 5 (lower is better)
Translates to: NYTIMYKTGALLRPRHVSSSSPA*KLSSSC
Trigger: GCAGGATGAGCTCAGCTTCAAGGCCGGAGATGAGCT...CGAGACGTGCCGTGGTCTCAGCAATGCACCTGTTTTATACATGATTGTGTAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS GCA 90 bp TGCACATCCTGTCTGCATTTGTCCACTTTGTCCACAAGTTTCTTCTaGTGTTCAGGGGTGACCGACTGCTCTGTCTTACTGTTCATCTCC +
Preference number: 5 (lower is better)
Translates to: CTSCLHLSTLSTSFF*CSGVTDCSVLLFIS
Trigger: GGAGATGAACAGTAAGACAGAGCAGTCGGTCACCCCTGAACAGCAGAAGAAACTTGTGGACAAAGTGGACAAATGCAGACAGGATGTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000045896.11
ENSMUST00000097360.3
ENSMUST00000114872.9
ENSMUST00000114873.8
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp ATGTTGGGGACTAAAAGGTCAAGGAAGAAAGCTACAGTGACCATCCAGAGTTCCCTGTTCTCCGCTAGGTaGAGATGCCGTTTGATATCC +
Preference number: 5 (lower is better)
Translates to: MLGTKRSRKKATVTIQSSLFSAR*RCRLIS
Trigger: GGATATCAAACGGCATCTCAACCTAGCGGAGAACAG...GGAACTCTGGATGGTCACTGTAGCTTTCTTCCTTGACCTTTTAGTCCCCAACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp GGGACTAAAAGGTCAAGGAAGAAAGCTACAGTGACCATCCAGAGTTCCTTCCTCACATCCTGTCTGCATTaGTCCACTTTGTCCACAAGT +
Preference number: 5 (lower is better)
Translates to: GTKRSRKKATVTIQSSFLTSCLH*STLSTS
Trigger: ACTTGTGGACAAAGTGGACAAATGCAGACAGGATGT...GAGGAAGGAACTCTGGATGGTCACTGTAGCTTTCTTCCTTGACCTTTTAGTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS-3UTR CAA 90 bp CCACACCCAGAATCCTTTAATGAAGACTCAAGACTCTCGGGCTTAGAGAAATGGCTTCTCCTGAGTCTTTaGCACATCCTGTCTGCATTT +
Preference number: 5 (lower is better)
Translates to: PHPESFNEDSRLSGLEKWLLLSL*HILSAF
Trigger: AAATGCAGACAGGATGTGCAAAAGACTCAGGAGAAG...CCATTTCTCTAAGCCCGAGAGTCTTGAGTCTTCATTAAAGGATTCTGGGTGTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045896.11
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS GCA 72 bp TACAGCCCCAGTGGCATTGCTCAGGGTGGCCCCCTCTaGCTTCTTAGGCTGTTTCTCCTTCTTGGCAGTGGT +
Preference number: 6 (lower is better)
Translates to: YSPSGIAQGGPL*LLRLFLLLGSG
Trigger: ACCACTGCCAAGAAGGAGAAACAGCCTAAGAAGGCAGAGGGGGCCACCCTGAGCAATGCCACTGGGGCTGTA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000045896.11
ENSMUST00000097360.3
ENSMUST00000114872.9
ENSMUST00000114873.8
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS TCA 72 bp CTCATTGCCCCCGAAGGGGTTTCCGCTCTCATCGTCTaGCCACTCGGTGGCATATGTTTGGCCTCGGTCATA +
Preference number: 6 (lower is better)
Translates to: LIAPEGVSALIV*PLGGICLASVI
Trigger: TATGACCGAGGCCAAACATATGCCACCGAGTGGTCAGACGATGAGAGCGGAAACCCCTTCGGGGGCAATGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000045896.11
ENSMUST00000097360.3
ENSMUST00000114872.9
ENSMUST00000114873.8
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS TCA 72 bp GGCACCAACCCTGTTCGTCTTCCTCTCCGAGCTTGGTaGGCTCATCTCCTTGAAGCTGAGCTCATCCTGCTC +
Preference number: 6 (lower is better)
Translates to: GTNPVRLPLRAW*AHLLEAELILL
Trigger: GAGCAGGATGAGCTCAGCTTCAAGGAGATGAGCTCACCAAGCTCGGAGAGGAAGACGAACAGGGTTGGTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114872.9
CDS TCA 72 bp TCCGCTTGTAGTTCCCCACCTCCCAGAAGCTATCTGTaGTCTCCTCTGAGGCCTCATCGTAGGAGCCAGACA +
Preference number: 6 (lower is better)
Translates to: SACSSPPPRSYL*SPLRPHRRSQT
Trigger: TGTCTGGCTCCTACGATGAGGCCTCAGAGGAGATCACAGATAGCTTCTGGGAGGTGGGGAACTACAAGCGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000045896.11
ENSMUST00000097360.3
ENSMUST00000114873.8
ENSMUST00000231236.2
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS CCA 72 bp CCGACTGCTCTGTCTTACTGTTCATCTCCCGGGTCATaGCCAGCCTTTCCTCCTTACAAGCCAAGTGATAGG +
Preference number: 6 (lower is better)
Translates to: PTALSYCSSPGS*PAFPPYKPSDR
Trigger: CCTATCACTTGGCTTGTAAGGAGGAAAGGCTGGCCATGACCCGGGAGATGAACAGTAAGACAGAGCAGTCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045896.11
ENSMUST00000097360.3
ENSMUST00000114873.8
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS TCA 72 bp CCACTTTGTCCACAAGTTTCTTCTGCTGTTCAGGGGTaGCCGACTGCTCTGTCTTACTGTTCATCTCCCGGG +
Preference number: 6 (lower is better)
Translates to: PLCPQVSSAVQG*PTALSYCSSPG
Trigger: CCCGGGAGATGAACAGTAAGACAGAGCAGTCGGTCACCCCTGAACAGCAGAAGAAACTTGTGGACAAAGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000045896.11
ENSMUST00000097360.3
ENSMUST00000114872.9
ENSMUST00000114873.8
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS GCA 72 bp TGTCTGCATTTGTCCACTTTGTCCACAAGTTTCTTCTaGTGTTCAGGGGTGACCGACTGCTCTGTCTTACTG +
Preference number: 6 (lower is better)
Translates to: CLHLSTLSTSFF*CSGVTDCSVLL
Trigger: CAGTAAGACAGAGCAGTCGGTCACCCCTGAACAGCAGAAGAAACTTGTGGACAAAGTGGACAAATGCAGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000045896.11
ENSMUST00000097360.3
ENSMUST00000114872.9
ENSMUST00000114873.8
ENSMUST00000231669.2
ENSMUST00000232437.2
CDS GCA 72 bp TCTCATACTTCTCCTGAGTCTTTTGCACATCCTGTCTaGATTTGTCCACTTTGTCCACAAGTTTCTTCTGCT +
Preference number: 6 (lower is better)
Translates to: SHTSPESFAHPV*ICPLCPQVSSA
Trigger: AGCAGAAGAAACTTGTGGACAAAGTGGACAAATGCAGACAGGATGTGCAAAAGACTCAGGAGAAGTATGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000045896.11
ENSMUST00000097360.3
ENSMUST00000114872.9
ENSMUST00000114873.8
ENSMUST00000231669.2
ENSMUST00000232437.2