RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PACS1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024855

Ensembl transcript IDs: ENSMUST00000025786.9, ENSMUST00000236775.2, ENSMUST00000237463.2

Found 298 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TACCGGGATGCCCAGGTGCCAGCCTCATTCCCCCTACTGGGAAGTTaGGCGGCAGGTGAGGTCACAGGAAGGGTAGGAGGCCCCAGCCCT +
Preference number: 1 (lower is better)
Translates to: YRDAQVPASFPLLGS*AAGEVTGRVGGPSP
Trigger: AGGGCTGGGGCCTCCTACCCTTCCTGTGACCTCACCTGCCGCGCAACTTCCCAGTAGGGGGAATGAGGCTGGCACCTGGGCATCCCGGTA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR GCA 90 bp GACTGGGAAGGCCCCTTCAATCCCAGAAATACCGGGATGCCCAGGTaGCAGCCTCATTCCCCCTACTGGGAAGTTGCGCGGCAGGTGAGG +
Preference number: 1 (lower is better)
Translates to: DWEGPFNPRNTGMPR*QPHSPYWEVARQVR
Trigger: CCTCACCTGCCGCGCAACTTCCCAGTAGGGGGAATGAGGCTGGCACCTGGGCATCCCGGTATTTCTGGGATTGAAGGGGCCTTCCCAGTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR GCA 90 bp AGGGGCTTGGAGAGCTGTCGCTCCTTCAGGGGAGTGCTCCTCTTCTaGCGAGGTGTGTGTGTCCCTTCCACCTTGCTGGGAGAGGCAGAG +
Preference number: 1 (lower is better)
Translates to: RGLESCRSFRGVLLF*RGVCVPSTLLGEAE
Trigger: CTCTGCCTCTCCCAGCAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR TCA 90 bp GCTCTGGCTGCCCACAGCTGCCACCTTGACCGGCCTCGGCATGGATaGGTTGCAGTTGCAGTAGCGCTGAATCCTAGTGAGAAGGGCGGA +
Preference number: 1 (lower is better)
Translates to: ALAAHSCHLDRPRHG*VAVAVALNPSEKGG
Trigger: TCCGCCCTTCTCACTAGGATTCAGCGCTACTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR TCA 90 bp GGAGGATGGAGCTCAGGTAGCTCTGGCTGCCCACAGCTGCCACCTTaGCCGGCCTCGGCATGGATGAGTTGCAGTTGCAGTAGCGCTGAA +
Preference number: 1 (lower is better)
Translates to: GGWSSGSSGCPQLPP*PASAWMSCSCSSAE
Trigger: TTCAGCGCTACTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR GCA 90 bp ATGGGAGAGACTGGGAAGGCCCCTTCAATCCCAGAAATACCGGGATaGCCAGGTGCCAGCCTCATTCCCCCTACTGGGAAGTTGCGCGGC +
Preference number: 1 (lower is better)
Translates to: MGETGKAPSIPEIPG*PGASLIPPTGKLRG
Trigger: GCCGCGCAACTTCCCAGTAGGGGGAATGAGGCTGGCACCTGGGCATCCCGGTATTTCTGGGATTGAAGGGGCCTTCCCAGTCTCTCCCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR CCA 90 bp CCCTGCTGGAGGAAGGCAGGGGGAGTACAACAGGCAACAGAGCCTTaGAAATGCAGAGCCAGGTGGCCAGGCTATGTAGGGTGCTGGGCT +
Preference number: 1 (lower is better)
Translates to: PCWRKAGGVQQATEP*KCRARWPGYVGCWA
Trigger: AGCCCAGCACCCTACATAGCCTGGCCACCTGGCTCTGCATTTCCAAGGCTCTGTTGCCTGTTGTACTCCCCCTGCCTTCCTCCAGCAGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR TCA 90 bp GGAGGGAGACCTGGTGGAGATGGGCCTCTTTCTGCTGCCCTGCCATaGCAGAAGTGGGAAGACAAAGCAGGGATGGGGACGCAAGCTGAC +
Preference number: 1 (lower is better)
Translates to: GGRPGGDGPLSAALP*QKWEDKAGMGTQAD
Trigger: GTCAGCTTGCGTCCCCATCCCTGCTTTGTCTTCCCACTTCTGTCATGGCAGGGCAGCAGAAAGAGGCCCATCTCCACCAGGTCTCCCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR GCA 90 bp CTGCTGGAGGGAGACCTGGTGGAGATGGGCCTCTTTCTGCTGCCCTaGCATGACAGAAGTGGGAAGACAAAGCAGGGATGGGGACGCAAG +
Preference number: 1 (lower is better)
Translates to: LLEGDLVEMGLFLLP*HDRSGKTKQGWGRK
Trigger: CTTGCGTCCCCATCCCTGCTTTGTCTTCCCACTTCTGTCATGGCAGGGCAGCAGAAAGAGGCCCATCTCCACCAGGTCTCCCTCCAGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR GCA 90 bp TTCTCTCACTCAGGGGCTTGGAGAGCTGTCGCTCCTTCAGGGGAGTaGTCCTCTTCTGCCGAGGTGTGTGTGTCCCTTCCACCTTGCTGG +
Preference number: 1 (lower is better)
Translates to: FSHSGAWRAVAPSGE*SSSAEVCVSLPPCW
Trigger: CCAGCAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR GCA 90 bp GTGCCAGAAAGCTGGGCTTCCCCTGCATGTGGCAGGCGAGAAACCTaGACCGAGCGGAAGACACTCTTGAGGGTGTTCTTTGAGCTGGCA +
Preference number: 1 (lower is better)
Translates to: VPESWASPACGRRET*TERKTLLRVFFELA
Trigger: TGCCAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCCACATGCAGGGGAAGCCCAGCTTTCTGGCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR GCA 90 bp GGTGACCACAGTCATTGCCATGGTGCCAGAAAGCTGGGCTTCCCCTaGATGTGGCAGGCGAGAAACCTGCACCGAGCGGAAGACACTCTT +
Preference number: 1 (lower is better)
Translates to: GDHSHCHGARKLGFP*MWQARNLHRAEDTL
Trigger: AAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCCACATGCAGGGGAAGCCCAGCTTTCTGGCACCATGGCAATGACTGTGGTCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR CCA 90 bp CCCCAGTCTTCCCACCCCACTTATTCTCAGGCCCAAGAGACACTCTaGACAGTAGGGCTGGGCAGCAGGAAGGGCTGGAGTCTTGGATGT +
Preference number: 1 (lower is better)
Translates to: PQSSHPTYSQAQETL*TVGLGSRKGWSLGC
Trigger: ACATCCAAGACTCCAGCCCTTCCTGCTGCCCAGCCCTACTGTCCAGAGTGTCTCTTGGGCCTGAGAATAAGTGGGGTGGGAAGACTGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR CCA 90 bp GAGATCGCTCACTGTCAGAGCTGTTGGTTCTCTCACTCAGGGGCTTaGAGAGCTGTCGCTCCTTCAGGGGAGTGCTCCTCTTCTGCCGAG +
Preference number: 1 (lower is better)
Translates to: EIAHCQSCWFSHSGA*RAVAPSGECSSSAE
Trigger: CTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR CCA 90 bp GTGTGCTGTGGCCCAGATCAGGAGATCGCTCACTGTCAGAGCTGTTaGTTCTCTCACTCAGGGGCTTGGAGAGCTGTCGCTCCTTCAGGG +
Preference number: 1 (lower is better)
Translates to: VCCGPDQEIAHCQSC*FSHSGAWRAVAPSG
Trigger: CCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR TCA 90 bp TGTGCCACACTGCTAGGAAGCAGTGAGAGGGCAACAGAGAAGCTCTaGAGTGCCAGAGGGCATGGAGGCTGGGCTAGCTCTGTCACGTGT +
Preference number: 1 (lower is better)
Translates to: CATLLGSSERATEKL*SARGHGGWASSVTC
Trigger: ACACGTGACAGAGCTAGCCCAGCCTCCATGCCCTCTGGCACTTCAGAGCTTCTCTGTTGCCCTCTCACTGCTTCCTAGCAGTGTGGCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR CCA 90 bp GGGGGAGTACAACAGGCAACAGAGCCTTGGAAATGCAGAGCCAGGTaGCCAGGCTATGTAGGGTGCTGGGCTGTCTCACTGTACCAGAAC +
Preference number: 1 (lower is better)
Translates to: GGVQQATEPWKCRAR*PGYVGCWAVSLYQN
Trigger: GTTCTGGTACAGTGAGACAGCCCAGCACCCTACATAGCCTGGCCACCTGGCTCTGCATTTCCAAGGCTCTGTTGCCTGTTGTACTCCCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR GCA 90 bp AGACTGTCGTACAGTTCATCCAAGTCCTCCTCCACTTCCCGAATCTaGTCCCGGGACACGTGTTCTAGCCCAAAGCCCACCTCGTCAGAA +
Preference number: 1 (lower is better)
Translates to: RLSYSSSKSSSTSRI*SRDTCSSPKPTSSE
Trigger: TTCTGACGAGGTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR CCA 90 bp AGCAAAGACCACTTGGACTCAGAAGGGAGGAGCATGACCCTGCCTTaGGAGGCAAGCTTGAGGATGGTGGGTTCTGGGGAAAAAGAGGCT +
Preference number: 1 (lower is better)
Translates to: SKDHLDSEGRSMTLP*EASLRMVGSGEKEA
Trigger: AGCCTCTTTTTCCCCAGAACCCACCATCCTCAAGCTTGCCTCCCAAGGCAGGGTCATGCTCCTCCCTTCTGAGTCCAAGTGGTCTTTGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR TCA 90 bp AATCCTAGTGAGAAGGGCGGACAGCACTGCCTGGACCTCCACTGTTaGGCAGGTGCATACCACAGGCTTCCTCTGGTCTTGAAGCAATTC +
Preference number: 1 (lower is better)
Translates to: NPSEKGGQHCLDLHC*AGAYHRLPLVLKQF
Trigger: GAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR TCA 90 bp ACAGATAATGTATGTGGAGGGGTGGGTTTGCTGTCTCCTACCTCATaGAGCCACAGAACAATCTTAGGTGGGAGGCTGGGAGGCAGAGGG +
Preference number: 1 (lower is better)
Translates to: TDNVCGGVGLLSPTS*SHRTILGGRLGGRG
Trigger: CCCTCTGCCTCCCAGCCTCCCACCTAAGATTGTTCTGTGGCTTCATGAGGTAGGAGACAGCAAACCCACCCCTCCACATACATTATCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR TCA 90 bp AACTATGTTCTGAGTGCAGTTCTGTGCCACACTGCTAGGAAGCAGTaGGAGGGCAACAGAGAAGCTCTGAAGTGCCAGAGGGCATGGAGG +
Preference number: 1 (lower is better)
Translates to: NYVLSAVLCHTARKQ*EGNREALKCQRAWR
Trigger: CCTCCATGCCCTCTGGCACTTCAGAGCTTCTCTGTTGCCCTCTCACTGCTTCCTAGCAGTGTGGCACAGAACTGCACTCAGAACATAGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR TCA 90 bp CTGGACAGTAGGGCTGGGCAGCAGGAAGGGCTGGAGTCTTGGATGTaGAGAATGCCAAAACTATGTTCTGAGTGCAGTTCTGTGCCACAC +
Preference number: 1 (lower is better)
Translates to: LDSRAGQQEGLESWM*RMPKLCSECSSVPH
Trigger: GTGTGGCACAGAACTGCACTCAGAACATAGTTTTGGCATTCTTCACATCCAAGACTCCAGCCCTTCCTGCTGCCCAGCCCTACTGTCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR GCA 90 bp GTAGGGCTGGGCAGCAGGAAGGGCTGGAGTCTTGGATGTGAAGAATaGCAAAACTATGTTCTGAGTGCAGTTCTGTGCCACACTGCTAGG +
Preference number: 1 (lower is better)
Translates to: VGLGSRKGWSLGCEE*QNYVLSAVLCHTAR
Trigger: CCTAGCAGTGTGGCACAGAACTGCACTCAGAACATAGTTTTGGCATTCTTCACATCCAAGACTCCAGCCCTTCCTGCTGCCCAGCCCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR CCA 90 bp CATCCAAGTGATTTGAGATGCCAGGAAATCATGCATGGGAGAGACTaGGAAGGCCCCTTCAATCCCAGAAATACCGGGATGCCCAGGTGC +
Preference number: 1 (lower is better)
Translates to: HPSDLRCQEIMHGRD*EGPFNPRNTGMPRC
Trigger: GCACCTGGGCATCCCGGTATTTCTGGGATTGAAGGGGCCTTCCCAGTCTCTCCCATGCATGATTTCCTGGCATCTCAAATCACTTGGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR CCA 90 bp GGCTCTGACATGGGAACAGCACCCACCCTCCTGATTGTTTCATTCTaGGCAGCCACCTTCAAGCCTGTTTCCACAAGAGAGGAACACAGA +
Preference number: 1 (lower is better)
Translates to: GSDMGTAPTLLIVSF*AATFKPVSTREEHR
Trigger: TCTGTGTTCCTCTCTTGTGGAAACAGGCTTGAAGGTGGCTGCCCAGAATGAAACAATCAGGAGGGTGGGTGCTGTTCCCATGTCAGAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR TCA 90 bp TCTGGGGAAAAAGAGGCTCTGACATGGGAACAGCACCCACCCTCCTaGTTGTTTCATTCTGGGCAGCCACCTTCAAGCCTGTTTCCACAA +
Preference number: 1 (lower is better)
Translates to: SGEKEALTWEQHPPS*LFHSGQPPSSLFPQ
Trigger: TTGTGGAAACAGGCTTGAAGGTGGCTGCCCAGAATGAAACAATCAGGAGGGTGGGTGCTGTTCCCATGTCAGAGCCTCTTTTTCCCCAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR GCA 90 bp GGTGCATCTTCTTTTTGTTCTCAACCTTCAGGAAGACGCAGGAGATaGAGGGAGCTGGAAGGAAGCAAGACTGTGACGGTGCAGAACCTC +
Preference number: 1 (lower is better)
Translates to: GASSFCSQPSGRRRR*RELEGSKTVTVQNL
Trigger: GAGGTTCTGCACCGTCACAGTCTTGCTTCCTTCCAGCTCCCTGCATCTCCTGCGTCTTCCTGAAGGTTGAGAACAAAAAGAAGATGCACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR GCA 90 bp CGAGGTGTGTGTGTCCCTTCCACCTTGCTGGGAGAGGCAGAGCCCTaGAGATCAGCTTTGCTGGACTTCATAGGAGTTTTGACTTTTTCT +
Preference number: 1 (lower is better)
Translates to: RGVCVPSTLLGEAEP*RSALLDFIGVLTFS
Trigger: AGAAAAAGTCAAAACTCCTATGAAGTCCAGCAAAGCTGATCTGCAGGGCTCTGCCTCTCCCAGCAAGGTGGAAGGGACACACACACCTCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR TCA 90 bp GCCATGACAGAAGTGGGAAGACAAAGCAGGGATGGGGACGCAAGCTaGCACAGGAAAAGGGAGACATATGACTGGGTAAGAGTCACAGAT +
Preference number: 1 (lower is better)
Translates to: AMTEVGRQSRDGDAS*HRKRETYDWVRVTD
Trigger: ATCTGTGACTCTTACCCAGTCATATGTCTCCCTTTTCCTGTGTCAGCTTGCGTCCCCATCCCTGCTTTGTCTTCCCACTTCTGTCATGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR GCA 90 bp CTGCCAGTCTGTGGTGTTCACCAGGATGACATTTTCAGGGAGGGCTaGATCCGATACCAGGATCTGATTCAGTTGGTCGTATACCACCTT +
Preference number: 1 (lower is better)
Translates to: LPVCGVHQDDIFREG*IRYQDLIQLVVYHL
Trigger: AAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCCTGGTGAACACCACAGACTGGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR TCA 90 bp ACCAGGATGACATTTTCAGGGAGGGCTGCATCCGATACCAGGATCTaGTTCAGTTGGTCGTATACCACCTTCCTTGGAATCTGTGTGCTG +
Preference number: 1 (lower is better)
Translates to: TRMTFSGRAASDTRI*FSWSYTTFLGICVL
Trigger: CAGCACACAGATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCCTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR CCA 90 bp CAAGAGAGGAACACAGAAGTGTATACTCCGTTCTACCTGTGCTTCTaGCTTATTCCAAGTGGAGTCACTTCTGCTGAGGGCGGATGGTTG +
Preference number: 1 (lower is better)
Translates to: QERNTEVYTPFYLCF*LIPSGVTSAEGGWL
Trigger: CAACCATCCGCCCTCAGCAGAAGTGACTCCACTTGGAATAAGCCAGAAGCACAGGTAGAACGGAGTATACACTTCTGTGTTCCTCTCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR TCA 90 bp CAGGTTTTTCATTTCCAGAAAGGGTACCAGTGCTGCAGGGGTGAGTaGGGTGAAGGAAGGCCCAGAGTATTCAATTACAGGGATTATGGG +
Preference number: 1 (lower is better)
Translates to: QVFHFQKGYQCCRGE*GEGRPRVFNYRDYG
Trigger: CCCATAATCCCTGTAATTGAATACTCTGGGCCTTCCTTCACCTCACTCACCCCTGCAGCACTGGTACCCTTTCTGGAAATGAAAAACCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR GCA 90 bp TTTCCACAAGAGAGGAACACAGAAGTGTATACTCCGTTCTACCTGTaGTTCTGGCTTATTCCAAGTGGAGTCACTTCTGCTGAGGGCGGA +
Preference number: 1 (lower is better)
Translates to: FPQERNTEVYTPFYL*FWLIPSGVTSAEGG
Trigger: TCCGCCCTCAGCAGAAGTGACTCCACTTGGAATAAGCCAGAAGCACAGGTAGAACGGAGTATACACTTCTGTGTTCCTCTCTTGTGGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR GCA 90 bp ACATTGCTGTGCAGGCCAAGTACTAAAGCGCCCTCATTAGGGTGTTaGATCACCTCTGCCATGTTGATGAGTCCCACAGCTAAGGTTTTA +
Preference number: 1 (lower is better)
Translates to: TLLCRPSTKAPSLGC*ITSAMLMSPTAKVL
Trigger: TAAAACCTTAGCTGTGGGACTCATCAACATGGCAGAGGTGATGCAACACCCTAATGAGGGCGCTTTAGTACTTGGCCTGCACAGCAATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR GCA 90 bp ATTTTTATTTCTGCCACTGGCACAGAGACATCCTTCACATTGCTGTaGAGGCCAAGTACTAAAGCGCCCTCATTAGGGTGTTGCATCACC +
Preference number: 1 (lower is better)
Translates to: IFISATGTETSFTLL*RPSTKAPSLGCCIT
Trigger: GGTGATGCAACACCCTAATGAGGGCGCTTTAGTACTTGGCCTGCACAGCAATGTGAAGGATGTCTCTGTGCCAGTGGCAGAAATAAAAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR CCA 90 bp TGGGAGAGACTGGGAAGGCCCCTTCAATCCCAGAAATACCGGGATGCCCAGGTGTGGGCTGGGGCTTGCTaGCCTTCCCCTGCCTGCAGG +
Preference number: 2 (lower is better)
Translates to: WERLGRPLQSQKYRDAQVWAGAC*PSPACR
Trigger: CCTGCAGGCAGGGGAAGGCCAGCAAGCCCCAGCCCA...CACCTGGGCATCCCGGTATTTCTGGGATTGAAGGGGCCTTCCCAGTCTCTCCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR CAA 90 bp GCCCTGCTGGAGGAAGGCAGGGGGAGTACAACAGGCAACAGAGCCTaGGAAATGCAGAGCCAGGTGGCCAGGCTATGTAGGGTGCTGGGC +
Preference number: 2 (lower is better)
Translates to: ALLEEGRGSTTGNRA*EMQSQVARLCRVLG
Trigger: GCCCAGCACCCTACATAGCCTGGCCACCTGGCTCTGCATTTCCAAGGCTCTGTTGCCTGTTGTACTCCCCCTGCCTTCCTCCAGCAGGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR-3UTR CCA 90 bp CGGTGCAGAACCTCAGGCAGCGGACCATGGATCCAGGTTTTAACCACCCACCAGAGGCCCCAGCCCTGCTaGAGGAAGGCAGGGGGAGTA +
Preference number: 2 (lower is better)
Translates to: RCRTSGSGPWIQVLTTHQRPQPC*RKAGGV
Trigger: TACTCCCCCTGCCTTCCTCCAGCAGGGCTGGGGCCT...CTGGTGGGTGGTTAAAACCTGGATCCATGGTCCGCTGCCTGAGGTTCTGCACCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR-3UTR GCA 90 bp TGGTTCTCTCACTCAGGGGCTTGGAGAGCTGTCGCTCCTTCAGGGGAGTGCTCCGTGTCCCTTCCACCTTaGTGGGAGAGGCAGAGCCCT +
Preference number: 2 (lower is better)
Translates to: WFSHSGAWRAVAPSGECSVSLPP*WERQSP
Trigger: AGGGCTCTGCCTCTCCCAGCAAGGTGGAAGGGACAC...GGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR CAA 90 bp GGAGATCGCTCACTGTCAGAGCTGTTGGTTCTCTCACTCAGGGGCTaGGAGAGCTGTCGCTCCTTCAGGGGAGTGCTCCTCTTCTGCCGA +
Preference number: 2 (lower is better)
Translates to: GDRSLSELLVLSLRG*ESCRSFRGVLLFCR
Trigger: TCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR GCA 90 bp GGCCTCTTTCTGCTGCCCTGCCATGACAGAAGTGGGAAGACAAAGCAGGGATGGAGAGACAAGCCCCAGTaGTGGGAAAGGGAGGCTGGG +
Preference number: 2 (lower is better)
Translates to: GLFLLPCHDRSGKTKQGWRDKPQ*WEREAG
Trigger: CCCAGCCTCCCTTTCCCAGCACTGGGGCTTGTCTCT...CCATCCCTGCTTTGTCTTCCCACTTCTGTCATGGCAGGGCAGCAGAAAGAGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR-3UTR GCA 90 bp CCCCATATGGGCTATTTGGGCTCCCCACGATGGCGAGGGCACTGCTCATGGATGTCCACTTCCCGAATCTaGTCCCGGGACACGTGTTCT +
Preference number: 2 (lower is better)
Translates to: PHMGYLGSPRWRGHCSWMSTSRI*SRDTCS
Trigger: AGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGA...CATCCATGAGCAGTGCCCTCGCCATCGTGGGGAGCCCAAATAGCCCATATGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR CAA 90 bp TGTGTGCTGTGGCCCAGATCAGGAGATCGCTCACTGTCAGAGCTGTaGGTTCTCTCACTCAGGGGCTTGGAGAGCTGTCGCTCCTTCAGG +
Preference number: 2 (lower is better)
Translates to: CVLWPRSGDRSLSEL*VLSLRGLESCRSFR
Trigger: CCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR TCA 90 bp AGCAAGACTGTGACGGTGCAGAACCTCAGGCAGCGGACCATGGATCCAGGTTTTCTTGGGAGGCAAGCTTaGGGATGGTGGGTTCTGGGG +
Preference number: 2 (lower is better)
Translates to: SKTVTVQNLRQRTMDPGFLGRQA*GWWVLG
Trigger: CCCCAGAACCCACCATCCTCAAGCTTGCCTCCCAAG...AAAACCTGGATCCATGGTCCGCTGCCTGAGGTTCTGCACCGTCACAGTCTTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR-3UTR TCA 90 bp TCTCACTCAGGGGCTTGGAGAGCTGTCGCTCCTTCAGGGGAGTGCTCCTCTTCTACTGCCTTCCTGCTCTaGGGAGAAGCTTTCCTCCTC +
Preference number: 2 (lower is better)
Translates to: SHSGAWRAVAPSGECSSSTAFLL*GEAFLL
Trigger: GAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGT...AGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR GCA 90 bp GTAGTCCACCTGGAGACCAATCACATCCCCATATGGGCTATTTGGGCTCCCCACGCCACGTACTGGCCCTaGCAGTCTGTGGTGTTCACC +
Preference number: 2 (lower is better)
Translates to: VVHLETNHIPIWAIWAPHATYWP*QSVVFT
Trigger: GGTGAACACCACAGACTGGCAGGGCCAGTACGTGGC...GTGGGGAGCCCAAATAGCCCATATGGGGATGTGATTGGTCTCCAGGTGGACTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR CAA 90 bp CAGCAAAGACCACTTGGACTCAGAAGGGAGGAGCATGACCCTGCCTaGGGAGGCAAGCTTGAGGATGGTGGGTTCTGGGGAAAAAGAGGC +
Preference number: 2 (lower is better)
Translates to: QQRPLGLRREEHDPA*GGKLEDGGFWGKRG
Trigger: GCCTCTTTTTCCCCAGAACCCACCATCCTCAAGCTTGCCTCCCAAGGCAGGGTCATGCTCCTCCCTTCTGAGTCCAAGTGGTCTTTGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR CAA 90 bp CTCAGGCAGCGGACCATGGATCCAGGTTTTAACCACCCACCAGCCTaGACCAGCAAAGACCACTTGGACTCAGAAGGGAGGAGCATGACC +
Preference number: 2 (lower is better)
Translates to: LRQRTMDPGFNHPPA*TSKDHLDSEGRSMT
Trigger: GGTCATGCTCCTCCCTTCTGAGTCCAAGTGGTCTTTGCTGGTCAAGGCTGGTGGGTGGTTAAAACCTGGATCCATGGTCCGCTGCCTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR-3UTR TCA 90 bp GTAGTCCACCTGGAGACCAATCACATCCCCATATGGGCTATTTGGGCTCCCCACGCCAATCTCCGTCTGTaGGCTGGACTGAGACATCCC +
Preference number: 2 (lower is better)
Translates to: VVHLETNHIPIWAIWAPHANLRL*AGLRHP
Trigger: GGGATGTCTCAGTCCAGCTCACAGACGGAGATTGGC...GTGGGGAGCCCAAATAGCCCATATGGGGATGTGATTGGTCTCCAGGTGGACTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR GCA 90 bp TCTTCTGCCGAGGTGTGTGTGTCCCTTCCACCTTGCTGGGAGAGGCAGAGCCCTGTGTTGCATCACCTCTaGCATGTTGATGAGTCCCAC +
Preference number: 2 (lower is better)
Translates to: SSAEVCVSLPPCWERQSPVLHHL*HVDESH
Trigger: GTGGGACTCATCAACATGGCAGAGGTGATGCAACAC...AGGGCTCTGCCTCTCCCAGCAAGGTGGAAGGGACACACACACCTCGGCAGAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR CCA 90 bp TGTTTCATTCTGGGCAGCCACCTTCAAGCCTGTTTCCACAAGAGAGGAACACAGCTGGGAAAGGGAGGCTaGGCTGGGGCTTGCTGGCCT +
Preference number: 2 (lower is better)
Translates to: CFILGSHLQACFHKRGTQLGKGG*AGACWP
Trigger: AGGCCAGCAAGCCCCAGCCCAGCCTCCCTTTCCCAG...CTGTGTTCCTCTCTTGTGGAAACAGGCTTGAAGGTGGCTGCCCAGAATGAAACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR-3UTR CCA 90 bp AGCAAGACTGTGACGGTGCAGAACCTCAGGCAGCGGACCATGGATCCAGGTTTTTGCTGGAGGGAGACCTaGTGGAGATGGGCCTCTTTC +
Preference number: 2 (lower is better)
Translates to: SKTVTVQNLRQRTMDPGFCWRET*WRWASF
Trigger: GAAAGAGGCCCATCTCCACCAGGTCTCCCTCCAGCA...AAAACCTGGATCCATGGTCCGCTGCCTGAGGTTCTGCACCGTCACAGTCTTGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR-3UTR CCA 90 bp TCCCCATCACCTGCAGTGGAGGGCGAGTCTTCAACAAGGCCCACTTTCACAACGTCTCACTCAGGGGCTTaGAGAGCTGTCGCTCCTTCA +
Preference number: 2 (lower is better)
Translates to: SPSPAVEGESSTRPTFTTSHSGA*RAVAPS
Trigger: TGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGA...CGTTGTGAAAGTGGGCCTTGTTGAAGACTCGCCCTCCACTGCAGGTGATGGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR CCA 90 bp GGCAGGCGAGAAACCTGCACCGAGCGGAAGACACTCTTGAGGGTGTTCTTTGAGCCCCATCACCTGCAGTaGAGGGCGAGTCTTCAACAA +
Preference number: 2 (lower is better)
Translates to: GRRETCTERKTLLRVFFEPHHLQ*RASLQQ
Trigger: TTGTTGAAGACTCGCCCTCCACTGCAGGTGATGGGG...CTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR TCA 90 bp TCTCACTCAGGGGCTTGGAGAGCTGTCGCTCCTTCAGGGGAGTGCTCCTCTTCTTCTCGCTTAAGGAAATaGGGGTACTGGAGGGAGAAG +
Preference number: 2 (lower is better)
Translates to: SHSGAWRAVAPSGECSSSSRLRK*GYWREK
Trigger: CTTCTCCCTCCAGTACCCTCATTTCCTTAAGCGAGA...AGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR CCA 90 bp AGTGGGAAGACAAAGCAGGGATGGGGACGCAAGCTGACACAGGAAAAGGGAGACATGCATGGGAGAGACTaGGAAGGCCCCTTCAATCCC +
Preference number: 2 (lower is better)
Translates to: SGKTKQGWGRKLTQEKGDMHGRD*EGPFNP
Trigger: GGGATTGAAGGGGCCTTCCCAGTCTCTCCCATGCAT...GTCTCCCTTTTCCTGTGTCAGCTTGCGTCCCCATCCCTGCTTTGTCTTCCCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR-3UTR TCA 90 bp TGTTTCATTCTGGGCAGCCACCTTCAAGCCTGTTTCCACAAGAGAGGAACACAGTGCTGCAGGGGTGAGTaGGGTGAAGGAAGGCCCAGA +
Preference number: 2 (lower is better)
Translates to: CFILGSHLQACFHKRGTQCCRGE*GEGRPR
Trigger: TCTGGGCCTTCCTTCACCTCACTCACCCCTGCAGCA...CTGTGTTCCTCTCTTGTGGAAACAGGCTTGAAGGTGGCTGCCCAGAATGAAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR-3UTR TCA 90 bp AGCAAGACTGTGACGGTGCAGAACCTCAGGCAGCGGACCATGGATCCAGGTTTTACTGCTAGGAAGCAGTaGGAGGGCAACAGAGAAGCT +
Preference number: 2 (lower is better)
Translates to: SKTVTVQNLRQRTMDPGFTARKQ*EGNREA
Trigger: AGCTTCTCTGTTGCCCTCTCACTGCTTCCTAGCAGT...AAAACCTGGATCCATGGTCCGCTGCCTGAGGTTCTGCACCGTCACAGTCTTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR-3UTR TCA 90 bp TCTGTGTGCTGTGGCCCAGATCAGGAGATCGCTCACTGTCAGAGCTGTTGGTTCGTCTGTGAGCTGGACTaGGACATCCCCTCAAAGAAG +
Preference number: 2 (lower is better)
Translates to: SVCCGPDQEIAHCQSCWFVCELD*DIPSKK
Trigger: CTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGAC...GAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR GCA 90 bp CTGATTGTTTCATTCTGGGCAGCCACCTTCAAGCCTGTTTCCACAAGAGAGGAATTGCTGGCCTTCCCCTaGCTGCAGGTGGTGAGGCTG +
Preference number: 2 (lower is better)
Translates to: LIVSFWAATFKPVSTREELLAFP*LQVVRL
Trigger: CAGCCTCACCACCTGCAGGCAGGGGAAGGCCAGCAA...TTCCTCTCTTGTGGAAACAGGCTTGAAGGTGGCTGCCCAGAATGAAACAATCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR-3UTR GCA 90 bp CCGTTCTACCTGTGCTTCTGGCTTATTCCAAGTGGAGTCACTTCTGCTGAGGGCCCAGGCTATGTAGGGTaGTGGGCTGTCTCACTGTAC +
Preference number: 2 (lower is better)
Translates to: PFYLCFWLIPSGVTSAEGPGYVG*WAVSLY
Trigger: GTACAGTGAGACAGCCCAGCACCCTACATAGCCTGG...GCCCTCAGCAGAAGTGACTCCACTTGGAATAAGCCAGAAGCACAGGTAGAACGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR-3UTR GCA 90 bp ATTCAGTTGGTCGTATACCACCTTCCTTGGAATCTGTGTGCTGTGGCCCAGATCGCTCCTTCAGGGGAGTaGTCCTCTTCTGCCGAGGTG +
Preference number: 2 (lower is better)
Translates to: IQLVVYHLPWNLCAVAQIAPSGE*SSSAEV
Trigger: CACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGC...GATCTGGGCCACAGCACACAGATTCCAAGGAAGGTGGTATACGACCAACTGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR CCA 90 bp AAGTGGGAAGACAAAGCAGGGATGGGGACGCAAGCTGACACAGGAAAAGGGAGAGGGCTGTATCCCCAGTaGCAGTGTCCTTTAGGACTG +
Preference number: 2 (lower is better)
Translates to: KWEDKAGMGTQADTGKGRGLYPQ*QCPLGL
Trigger: CAGTCCTAAAGGACACTGCCACTGGGGATACAGCCC...TCTCCCTTTTCCTGTGTCAGCTTGCGTCCCCATCCCTGCTTTGTCTTCCCACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR-3UTR CCA 90 bp AAGTGGGAAGACAAAGCAGGGATGGGGACGCAAGCTGACACAGGAAAAGGGAGACCAGGAAATCATGCATaGGAGAGACTGGGAAGGCCC +
Preference number: 2 (lower is better)
Translates to: KWEDKAGMGTQADTGKGRPGNHA*ERLGRP
Trigger: GGGCCTTCCCAGTCTCTCCCATGCATGATTTCCTGG...TCTCCCTTTTCCTGTGTCAGCTTGCGTCCCCATCCCTGCTTTGTCTTCCCACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR-3UTR CCA 90 bp AACTCCATAGGACTGGTGGTGTCTTTCCCGAGGCTGCCCTTGCTGTTGAGACTGCACCAGGCCACTGGCTaGAAGGATGATCTCATTGGA +
Preference number: 2 (lower is better)
Translates to: NSIGLVVSFPRLPLLLRLHQATG*KDDLIG
Trigger: TCCAATGAGATCATCCTTCCAGCCAGTGGCCTGGTG...CAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTCCTATGGAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR CCA 90 bp TCTGTGTGCTGTGGCCCAGATCAGGAGATCGCTCACTGTCAGAGCTGTTGGTTCAGGGAGAAGGTTAACTaGAGCTCTGTCTCCACCAGG +
Preference number: 2 (lower is better)
Translates to: SVCCGPDQEIAHCQSCWFREKVN*SSVSTR
Trigger: CCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCT...GAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR TCA 90 bp AACTCCATAGGACTGGTGGTGTCTTTCCCGAGGCTGCCCTTGCTGTTGAGACTGCCTCGTCAGAAACTTTaGATCGTTTCAGGAGGGCCA +
Preference number: 2 (lower is better)
Translates to: NSIGLVVSFPRLPLLLRLPRQKL*IVSGGP
Trigger: TGGCCCTCCTGAAACGATTCAAAGTTTCTGACGAGG...CAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTCCTATGGAGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR GCA 90 bp CCCCATATGGGCTATTTGGGCTCCCCACGATGGCGAGGGCACTGCTCATGGATGGTACAACCAGACTTGTaGTCACATCTCCAAACATGT +
Preference number: 2 (lower is better)
Translates to: PHMGYLGSPRWRGHCSWMVQPDL*SHLQTC
Trigger: ACATGTTTGGAGATGTGAGCACAAGTCTGGTTGTAC...CATCCATGAGCAGTGCCCTCGCCATCGTGGGGAGCCCAAATAGCCCATATGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR CCA 90 bp CTTCCTCTGGTCTTGAAGCAATTCAGCCACGTACTGGCCCTGCCAGTCTGTGGTGTATACCACCTTCCTTaGAATCTGTGTGCTGTGGCC +
Preference number: 2 (lower is better)
Translates to: LPLVLKQFSHVLALPVCGVYHLP*NLCAVA
Trigger: GGCCACAGCACACAGATTCCAAGGAAGGTGGTATAC...ACCACAGACTGGCAGGGCCAGTACGTGGCTGAATTGCTTCAAGACCAGAGGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR CAA 90 bp GACATTTTCAGGGAGGGCTGCATCCGATACCAGGATCTGATTCAGTaGGTCGTATACCACCTTCCTTGGAATCTGTGTGCTGTGGCCCAG +
Preference number: 2 (lower is better)
Translates to: DIFREGCIRYQDLIQ*VVYHLPWNLCAVAQ
Trigger: CTGGGCCACAGCACACAGATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR CCA 90 bp ATGGTGGGTTCTGGGGAAAAAGAGGCTCTGACATGGGAACAGCACCCACCCTCCCAATTACAGGGATTATaGGTACCAGAGTCAGGACCA +
Preference number: 2 (lower is better)
Translates to: MVGSGEKEALTWEQHPPSQLQGL*VPESGP
Trigger: TGGTCCTGACTCTGGTACCCATAATCCCTGTAATTG...GGAGGGTGGGTGCTGTTCCCATGTCAGAGCCTCTTTTTCCCCAGAACCCACCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR-3UTR TCA 90 bp CCACAAGAGAGGAACACAGAAGTGTATACTCCGTTCTACCTGTGCTTCTGGCTTGATGGGGACGCAAGCTaGCACAGGAAAAGGGAGACA +
Preference number: 2 (lower is better)
Translates to: PQERNTEVYTPFYLCFWLDGDAS*HRKRET
Trigger: TGTCTCCCTTTTCCTGTGTCAGCTTGCGTCCCCATC...AAGCCAGAAGCACAGGTAGAACGGAGTATACACTTCTGTGTTCCTCTCTTGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR-3UTR TCA 90 bp ATTCAGTTGGTCGTATACCACCTTCCTTGGAATCTGTGTGCTGTGGCCCAGATCTGGGCTTTGGGGTGCTaGGGATGCTTTCTGTTTCCT +
Preference number: 2 (lower is better)
Translates to: IQLVVYHLPWNLCAVAQIWALGC*GCFLFP
Trigger: AGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCA...GATCTGGGCCACAGCACACAGATTCCAAGGAAGGTGGTATACGACCAACTGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR GCA 90 bp CCACAAGAGAGGAACACAGAAGTGTATACTCCGTTCTACCTGTGCTTCTGGCTTCCAGAAATACCGGGATaGCCAGGTGCCAGCCTCATT +
Preference number: 2 (lower is better)
Translates to: PQERNTEVYTPFYLCFWLPEIPG*PGASLI
Trigger: AATGAGGCTGGCACCTGGGCATCCCGGTATTTCTGG...AAGCCAGAAGCACAGGTAGAACGGAGTATACACTTCTGTGTTCCTCTCTTGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR-3UTR GCA 90 bp TGTTTCATTCTGGGCAGCCACCTTCAAGCCTGTTTCCACAAGAGAGGAACACAGCTGAGTGCAGTTCTGTaGCACACTGCTAGGAAGCAG +
Preference number: 2 (lower is better)
Translates to: CFILGSHLQACFHKRGTQLSAVL*HTARKQ
Trigger: CTGCTTCCTAGCAGTGTGGCACAGAACTGCACTCAG...CTGTGTTCCTCTCTTGTGGAAACAGGCTTGAAGGTGGCTGCCCAGAATGAAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR-3UTR GCA 90 bp TCCCCATCACCTGCAGTGGAGGGCGAGTCTTCAACAAGGCCCACTTTCACAACGCTTTGCAACATAATCTaGAGTTTGTTGGCATCTCGC +
Preference number: 2 (lower is better)
Translates to: SPSPAVEGESSTRPTFTTLCNII*SLLASR
Trigger: GCGAGATGCCAACAAACTGCAGATTATGTTGCAAAG...CGTTGTGAAAGTGGGCCTTGTTGAAGACTCGCCCTCCACTGCAGGTGATGGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR CCA 90 bp CTGTCAGAGCTGTTGGTTCTCTCACTCAGGGGCTTGGAGAGCTGTCGCTCCTTCTTTTATTTCTGCCACTaGCACAGAGACATCCTTCAC +
Preference number: 2 (lower is better)
Translates to: LSELLVLSLRGLESCRSFFYFCH*HRDILH
Trigger: GTGAAGGATGTCTCTGTGCCAGTGGCAGAAATAAAA...GAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR TCA 90 bp CTGATTGTTTCATTCTGGGCAGCCACCTTCAAGCCTGTTTCCACAAGAGAGGAATCTGCTGCCCTGCCATaGCAGAAGTGGGAAGACAAA +
Preference number: 2 (lower is better)
Translates to: LIVSFWAATFKPVSTREESAALP*QKWEDK
Trigger: TTTGTCTTCCCACTTCTGTCATGGCAGGGCAGCAGA...TTCCTCTCTTGTGGAAACAGGCTTGAAGGTGGCTGCCCAGAATGAAACAATCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR-3UTR TCA 90 bp AGCAAGACTGTGACGGTGCAGAACCTCAGGCAGCGGACCATGGATCCAGGTTTTCACCAGTTTATTGAATaGAAAAACCCAACATGGCCC +
Preference number: 2 (lower is better)
Translates to: SKTVTVQNLRQRTMDPGFHQFIE*KNPTWP
Trigger: GGGCCATGTTGGGTTTTTTCATTCAATAAACTGGTG...AAAACCTGGATCCATGGTCCGCTGCCTGAGGTTCTGCACCGTCACAGTCTTGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR-3UTR TCA 90 bp CTGGACTTCATAGGAGTTTTGACTTTTTCTGGTACAACCAGACTTGTGCTCACAGGCTGCCCTTGCTGTTaGGACTGCCAATCTCCGTCT +
Preference number: 2 (lower is better)
Translates to: LDFIGVLTFSGTTRLVLTGCPCC*DCQSPS
Trigger: AGACGGAGATTGGCAGTCTCAACAGCAAGGGCAGCC...TGTGAGCACAAGTCTGGTTGTACCAGAAAAAGTCAAAACTCCTATGAAGTCCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR CCA 90 bp CCACAAGAGAGGAACACAGAAGTGTATACTCCGTTCTACCTGTGCTTCTGGCTTATGTATGTGGAGGGGTaGGTTTGCTGTCTCCTACCT +
Preference number: 2 (lower is better)
Translates to: PQERNTEVYTPFYLCFWLMYVEG*VCCLLP
Trigger: AGGTAGGAGACAGCAAACCCACCCCTCCACATACAT...AAGCCAGAAGCACAGGTAGAACGGAGTATACACTTCTGTGTTCCTCTCTTGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR CAA 90 bp GAGGCAGAGCCCTGCAGATCAGCTTTGCTGGACTTCATAGGAGTTTaGACTTTTTCTGGTACAACCAGACTTGTGCTCACATCTCCAAAC +
Preference number: 2 (lower is better)
Translates to: EAEPCRSALLDFIGV*TFSGTTRLVLTSPN
Trigger: GTTTGGAGATGTGAGCACAAGTCTGGTTGTACCAGAAAAAGTCAAAACTCCTATGAAGTCCAGCAAAGCTGATCTGCAGGGCTCTGCCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR GCA 90 bp TCGTATACCACCTTCCTTGGAATCTGTGTGCTGTGGCCCAGATCAGGAGATCGCGTAGATTTTTATTTCTaGCACTGGCACAGAGACATC +
Preference number: 2 (lower is better)
Translates to: SYTTFLGICVLWPRSGDRVDFYF*HWHRDI
Trigger: GATGTCTCTGTGCCAGTGGCAGAAATAAAAATCTAC...GCGATCTCCTGATCTGGGCCACAGCACACAGATTCCAAGGAAGGTGGTATACGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR CCA 90 bp CTTCCTCTGGTCTTGAAGCAATTCAGCCACGTACTGGCCCTGCCAGTCTGTGGTGTCAAGCTGTCATCTTaGTTTTTAATCCAGGTAGAT +
Preference number: 2 (lower is better)
Translates to: LPLVLKQFSHVLALPVCGVKLSS*FLIQVD
Trigger: ATCTACCTGGATTAAAAACCAAGATGACAGCTTGAC...ACCACAGACTGGCAGGGCCAGTACGTGGCTGAATTGCTTCAAGACCAGAGGAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR TCA 90 bp TTGTCAATATCTGGGGAGCGATCAGACAGCTTAGACTTGATTCCTTCATGGTCACACTGGCTGGAAGGATaGTCTCATTGGAGCGAAGAA +
Preference number: 2 (lower is better)
Translates to: LSISGERSDSLDLIPSWSHWLEG*SHWSEE
Trigger: TTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGTG...TGACCATGAAGGAATCAAGTCTAAGCTGTCTGATCGCTCCCCAGATATTGACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR CCA 90 bp CTGGACTTCATAGGAGTTTTGACTTTTTCTGGTACAACCAGACTTGTGCTCACATCTCCGTCTGTGAGCTaGACTGAGACATCCCCTCAA +
Preference number: 2 (lower is better)
Translates to: LDFIGVLTFSGTTRLVLTSPSVS*TETSPQ
Trigger: TTGAGGGGATGTCTCAGTCCAGCTCACAGACGGAGA...TGTGAGCACAAGTCTGGTTGTACCAGAAAAAGTCAAAACTCCTATGAAGTCCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR GCA 90 bp ATCCGATACCAGGATCTGATTCAGTTGGTCGTATACCACCTTCCTTGGAATCTGAGACATCCTTCACATTaGTGTGCAGGCCAAGTACTA +
Preference number: 2 (lower is better)
Translates to: IRYQDLIQLVVYHLPWNLRHPSH*CAGQVL
Trigger: TAGTACTTGGCCTGCACAGCAATGTGAAGGATGTCT...CAGATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGAT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR CCA 90 bp CCACAAGAGAGGAACACAGAAGTGTATACTCCGTTCTACCTGTGCTTCTGGCTTAGGGAGACATATGACTaGGTAAGAGTCACAGATAAT +
Preference number: 2 (lower is better)
Translates to: PQERNTEVYTPFYLCFWLRETYD*VRVTDN
Trigger: ATTATCTGTGACTCTTACCCAGTCATATGTCTCCCT...AAGCCAGAAGCACAGGTAGAACGGAGTATACACTTCTGTGTTCCTCTCTTGTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR CAA 90 bp GGTTTTATAGCCCAAGATAGTTCGGTTCTTGTACCGCTTCCTCCTTaGCAACATAATCTGCAGTTTGTTGGCATCTCGCTTAAGGAAATG +
Preference number: 2 (lower is better)
Translates to: GFIAQDSSVLVPLPP*QHNLQFVGISLKEM
Trigger: CATTTCCTTAAGCGAGATGCCAACAAACTGCAGATTATGTTGCAAAGGAGGAAGCGGTACAAGAACCGAACTATCTTGGGCTATAAAACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR CCA 90 bp ATCCGATACCAGGATCTGATTCAGTTGGTCGTATACCACCTTCCTTGGAATCTGGGTCAATGGGCTGGCTaGATAAAGAGTAGATTTTTA +
Preference number: 2 (lower is better)
Translates to: IRYQDLIQLVVYHLPWNLGQWAG*IKSRFL
Trigger: TAAAAATCTACTCTTTATCCAGCCAGCCCATTGACC...CAGATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR CCA 72 bp TGGGCTCCCCACGATGGCGAGGGCACTGCTCATGGATaGGGACGAGGGAGGGGTAGCTGTGGCATCTCGGCT +
Preference number: 3 (lower is better)
Translates to: WAPHDGEGTAHG*GRGRGSCGISA
Trigger: AGCCGAGATGCCACAGCTACCCCTCCCTCGTCCCCATCCATGAGCAGTGCCCTCGCCATCGTGGGGAGCCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR TCA 72 bp AGCCTCATTCCCCCTACTGGGAAGTTGCGCGGCAGGTaGGGTCACAGGAAGGGTAGGAGGCCCCAGCCCTGC +
Preference number: 3 (lower is better)
Translates to: SLIPPTGKLRGR*GHRKGRRPQPC
Trigger: GCAGGGCTGGGGCCTCCTACCCTTCCTGTGACCTCACCTGCCGCGCAACTTCCCAGTAGGGGGAATGAGGCT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR GCA 72 bp GGCCCCTTCAATCCCAGAAATACCGGGATGCCCAGGTaGCAGCCTCATTCCCCCTACTGGGAAGTTGCGCGG +
Preference number: 3 (lower is better)
Translates to: GPFNPRNTGMPR*QPHSPYWEVAR
Trigger: CCGCGCAACTTCCCAGTAGGGGGAATGAGGCTGGCACCTGGGCATCCCGGTATTTCTGGGATTGAAGGGGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR GCA 72 bp GAGAGCTGTCGCTCCTTCAGGGGAGTGCTCCTCTTCTaGCGAGGTGTGTGTGTCCCTTCCACCTTGCTGGGA +
Preference number: 3 (lower is better)
Translates to: ESCRSFRGVLLF*RGVCVPSTLLG
Trigger: TCCCAGCAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR GCA 72 bp TCAGGGGCTTGGAGAGCTGTCGCTCCTTCAGGGGAGTaGTCCTCTTCTGCCGAGGTGTGTGTGTCCCTTCCA +
Preference number: 3 (lower is better)
Translates to: SGAWRAVAPSGE*SSSAEVCVSLP
Trigger: TGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR CAA 90 bp TCTTCTGCCGAGGTGTGTGTGTCCCTTCCACCTTGCTGGGAGAGGCAGAGCCCTCCCTCAAAGAAGGGCTaGAGCTTGGGCTTTGGGGTG +
Preference number: 3 (lower is better)
Translates to: SSAEVCVSLPPCWERQSPPSKKG*SLGFGV
Trigger: CACCCCAAAGCCCAAGCTCAAGCCCTTCTTTGAGGG...AGGGCTCTGCCTCTCCCAGCAAGGTGGAAGGGACACACACACCTCGGCAGAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR TCA 72 bp CCTGGTGGAGATGGGCCTCTTTCTGCTGCCCTGCCATaGCAGAAGTGGGAAGACAAAGCAGGGATGGGGACG +
Preference number: 3 (lower is better)
Translates to: PGGDGPLSAALP*QKWEDKAGMGT
Trigger: CGTCCCCATCCCTGCTTTGTCTTCCCACTTCTGTCATGGCAGGGCAGCAGAAAGAGGCCCATCTCCACCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR TCA 72 bp GCCCACAGCTGCCACCTTGACCGGCCTCGGCATGGATaGGTTGCAGTTGCAGTAGCGCTGAATCCTAGTGAG +
Preference number: 3 (lower is better)
Translates to: AHSCHLDRPRHG*VAVAVALNPSE
Trigger: CTCACTAGGATTCAGCGCTACTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR GCA 72 bp ACTGGGAAGGCCCCTTCAATCCCAGAAATACCGGGATaGCCAGGTGCCAGCCTCATTCCCCCTACTGGGAAG +
Preference number: 3 (lower is better)
Translates to: TGKAPSIPEIPG*PGASLIPPTGK
Trigger: CTTCCCAGTAGGGGGAATGAGGCTGGCACCTGGGCATCCCGGTATTTCTGGGATTGAAGGGGCCTTCCCAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR GCA 72 bp AGTCATTGCCATGGTGCCAGAAAGCTGGGCTTCCCCTaGATGTGGCAGGCGAGAAACCTGCACCGAGCGGAA +
Preference number: 3 (lower is better)
Translates to: SHCHGARKLGFP*MWQARNLHRAE
Trigger: TTCCGCTCGGTGCAGGTTTCTCGCCTGCCACATGCAGGGGAAGCCCAGCTTTCTGGCACCATGGCAATGACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR CCA 72 bp TCTTCTGCCGAGGTGTGTGTGTCCCTTCCACCTTGCTaGGAGAGGCAGAGCCCTGCAGATCAGCTTTGCTGG +
Preference number: 3 (lower is better)
Translates to: SSAEVCVSLPPC*ERQSPADQLCW
Trigger: CCAGCAAAGCTGATCTGCAGGGCTCTGCCTCTCCCAGCAAGGTGGAAGGGACACACACACCTCGGCAGAAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR CAA 90 bp CCCCATATGGGCTATTTGGGCTCCCCACGATGGCGAGGGCACTGCTCATGGATGCCACTGTCGCTGGGGTaGTACATCTCTAGACTGTCG +
Preference number: 3 (lower is better)
Translates to: PHMGYLGSPRWRGHCSWMPLSLG*YISRLS
Trigger: CGACAGTCTAGAGATGTACAACCCCAGCGACAGTGG...CATCCATGAGCAGTGCCCTCGCCATCGTGGGGAGCCCAAATAGCCCATATGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR TCA 72 bp CTGCTAGGAAGCAGTGAGAGGGCAACAGAGAAGCTCTaGAGTGCCAGAGGGCATGGAGGCTGGGCTAGCTCT +
Preference number: 3 (lower is better)
Translates to: LLGSSERATEKL*SARGHGGWASS
Trigger: AGAGCTAGCCCAGCCTCCATGCCCTCTGGCACTTCAGAGCTTCTCTGTTGCCCTCTCACTGCTTCCTAGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR TCA 72 bp GACTGGTGGTGTCTTTCCCGAGGCTGCCCTTGCTGTTaGGACTGCCAATCTCCGTCTGTGAGCTGGACTGAG +
Preference number: 3 (lower is better)
Translates to: DWWCLSRGCPCC*DCQSPSVSWTE
Trigger: CTCAGTCCAGCTCACAGACGGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR GCA 72 bp GGAGACCTGGTGGAGATGGGCCTCTTTCTGCTGCCCTaGCATGACAGAAGTGGGAAGACAAAGCAGGGATGG +
Preference number: 3 (lower is better)
Translates to: GDLVEMGLFLLP*HDRSGKTKQGW
Trigger: CCATCCCTGCTTTGTCTTCCCACTTCTGTCATGGCAGGGCAGCAGAAAGAGGCCCATCTCCACCAGGTCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR GCA 72 bp TGGAGGGAGACCTGGTGGAGATGGGCCTCTTTCTGCTaGCCTGCCATGACAGAAGTGGGAAGACAAAGCAGG +
Preference number: 3 (lower is better)
Translates to: WRETWWRWASFC*PAMTEVGRQSR
Trigger: CCTGCTTTGTCTTCCCACTTCTGTCATGGCAGGGCAGCAGAAAGAGGCCCATCTCCACCAGGTCTCCCTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR GCA 72 bp AGCTGGGCTTCCCCTGCATGTGGCAGGCGAGAAACCTaGACCGAGCGGAAGACACTCTTGAGGGTGTTCTTT +
Preference number: 3 (lower is better)
Translates to: SWASPACGRRET*TERKTLLRVFF
Trigger: AAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCCACATGCAGGGGAAGCCCAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR CCA 72 bp CAACAGGCAACAGAGCCTTGGAAATGCAGAGCCAGGTaGCCAGGCTATGTAGGGTGCTGGGCTGTCTCACTG +
Preference number: 3 (lower is better)
Translates to: QQATEPWKCRAR*PGYVGCWAVSL
Trigger: CAGTGAGACAGCCCAGCACCCTACATAGCCTGGCCACCTGGCTCTGCATTTCCAAGGCTCTGTTGCCTGTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR CCA 72 bp AGGAAGGCAGGGGGAGTACAACAGGCAACAGAGCCTTaGAAATGCAGAGCCAGGTGGCCAGGCTATGTAGGG +
Preference number: 3 (lower is better)
Translates to: RKAGGVQQATEP*KCRARWPGYVG
Trigger: CCCTACATAGCCTGGCCACCTGGCTCTGCATTTCCAAGGCTCTGTTGCCTGTTGTACTCCCCCTGCCTTCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR CCA 72 bp CACTTGGACTCAGAAGGGAGGAGCATGACCCTGCCTTaGGAGGCAAGCTTGAGGATGGTGGGTTCTGGGGAA +
Preference number: 3 (lower is better)
Translates to: HLDSEGRSMTLP*EASLRMVGSGE
Trigger: TTCCCCAGAACCCACCATCCTCAAGCTTGCCTCCCAAGGCAGGGTCATGCTCCTCCCTTCTGAGTCCAAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR CCA 72 bp GGCCCAGATCAGGAGATCGCTCACTGTCAGAGCTGTTaGTTCTCTCACTCAGGGGCTTGGAGAGCTGTCGCT +
Preference number: 3 (lower is better)
Translates to: GPDQEIAHCQSC*FSHSGAWRAVA
Trigger: AGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR CCA 72 bp CCAGTAGTCCACCTGGAGACCAATCACATCCCCATATaGGCTATTTGGGCTCCCCACGATGGCGAGGGCACT +
Preference number: 3 (lower is better)
Translates to: PVVHLETNHIPI*AIWAPHDGEGT
Trigger: AGTGCCCTCGCCATCGTGGGGAGCCCAAATAGCCCATATGGGGATGTGATTGGTCTCCAGGTGGACTACTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR CAA 90 bp GTAGTCCACCTGGAGACCAATCACATCCCCATATGGGCTATTTGGGCTCCCCACAGCCAGTCTGGGGTCTaGCTGGCAAGGGACTTGACA +
Preference number: 3 (lower is better)
Translates to: VVHLETNHIPIWAIWAPHSQSGV*LARDLT
Trigger: TGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCT...GTGGGGAGCCCAAATAGCCCATATGGGGATGTGATTGGTCTCCAGGTGGACTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR GCA 72 bp TACAGTTCATCCAAGTCCTCCTCCACTTCCCGAATCTaGTCCCGGGACACGTGTTCTAGCCCAAAGCCCACC +
Preference number: 3 (lower is better)
Translates to: YSSSKSSSTSRI*SRDTCSSPKPT
Trigger: GGTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR GCA 72 bp GGCAGCTGGTGTGTTGTGGTAGCTCCATTGACATACTaGATCACACGACCCACCACGTCCAGTGGCTCTGAC +
Preference number: 3 (lower is better)
Translates to: GSWCVVVAPLTY*ITRPTTSSGSD
Trigger: GTCAGAGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR TCA 72 bp CTGAGTGCAGTTCTGTGCCACACTGCTAGGAAGCAGTaGGAGGGCAACAGAGAAGCTCTGAAGTGCCAGAGG +
Preference number: 3 (lower is better)
Translates to: LSAVLCHTARKQ*EGNREALKCQR
Trigger: CCTCTGGCACTTCAGAGCTTCTCTGTTGCCCTCTCACTGCTTCCTAGCAGTGTGGCACAGAACTGCACTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR TCA 72 bp CGTCCAGTGGCTCTGACACTGGAGGCTCTGAGCGACTaGATAGGTCTCTCCAGGCAGAATCAAGAAAGGTGC +
Preference number: 3 (lower is better)
Translates to: RPVALTLEALSD*IGLSRQNQERC
Trigger: GCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAGAGCCACTGGACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR TCA 72 bp GCAGGCGAGAAACCTGCACCGAGCGGAAGACACTCTTaGGGGTGTTCTTTGAGCTGGCATCCCTCTTATCAC +
Preference number: 3 (lower is better)
Translates to: AGEKPAPSGRHS*GCSLSWHPSYH
Trigger: GTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR GCA 72 bp TGGAAATGCAGAGCCAGGTGGCCAGGCTATGTAGGGTaGTGGGCTGTCTCACTGTACCAGAACTCCAGGTTT +
Preference number: 3 (lower is better)
Translates to: WKCRARWPGYVG*WAVSLYQNSRF
Trigger: AAACCTGGAGTTCTGGTACAGTGAGACAGCCCAGCACCCTACATAGCCTGGCCACCTGGCTCTGCATTTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR-3UTR CAA 90 bp CCGTTCTACCTGTGCTTCTGGCTTATTCCAAGTGGAGTCACTTCTGCTGAGGGCACAGGCAACAGAGCCTaGGAAATGCAGAGCCAGGTG +
Preference number: 3 (lower is better)
Translates to: PFYLCFWLIPSGVTSAEGTGNRA*EMQSQV
Trigger: CACCTGGCTCTGCATTTCCAAGGCTCTGTTGCCTGT...GCCCTCAGCAGAAGTGACTCCACTTGGAATAAGCCAGAAGCACAGGTAGAACGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR-3UTR CAA 90 bp CTTCCTCTGGTCTTGAAGCAATTCAGCCACGTACTGGCCCTGCCAGTCTGTGGTGCCCTCATTAGGGTGTaGCATCACCTCTGCCATGTT +
Preference number: 3 (lower is better)
Translates to: LPLVLKQFSHVLALPVCGALIRV*HHLCHV
Trigger: AACATGGCAGAGGTGATGCAACACCCTAATGAGGGC...ACCACAGACTGGCAGGGCCAGTACGTGGCTGAATTGCTTCAAGACCAGAGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR CAA 90 bp GGCAGGCGAGAAACCTGCACCGAGCGGAAGACACTCTTGAGGGTGTTCTTTGAGACCTCGTCAGAAACTTaGAATCGTTTCAGGAGGGCC +
Preference number: 3 (lower is better)
Translates to: GRRETCTERKTLLRVFFETSSET*NRFRRA
Trigger: GGCCCTCCTGAAACGATTCAAAGTTTCTGACGAGGT...CTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR TCA 72 bp GTATGTGGAGGGGTGGGTTTGCTGTCTCCTACCTCATaGAGCCACAGAACAATCTTAGGTGGGAGGCTGGGA +
Preference number: 3 (lower is better)
Translates to: VCGGVGLLSPTS*SHRTILGGRLG
Trigger: TCCCAGCCTCCCACCTAAGATTGTTCTGTGGCTTCATGAGGTAGGAGACAGCAAACCCACCCCTCCACATAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR TCA 72 bp AAAGAGGCTCTGACATGGGAACAGCACCCACCCTCCTaGTTGTTTCATTCTGGGCAGCCACCTTCAAGCCTG +
Preference number: 3 (lower is better)
Translates to: KEALTWEQHPPS*LFHSGQPPSSL
Trigger: CAGGCTTGAAGGTGGCTGCCCAGAATGAAACAATCAGGAGGGTGGGTGCTGTTCCCATGTCAGAGCCTCTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR TCA 72 bp GGACCATGGATCCAGGTTTTAACCACCCACCAGCCTTaGCCAGCAAAGACCACTTGGACTCAGAAGGGAGGA +
Preference number: 3 (lower is better)
Translates to: GPWIQVLTTHQP*PAKTTWTQKGG
Trigger: TCCTCCCTTCTGAGTCCAAGTGGTCTTTGCTGGTCAAGGCTGGTGGGTGGTTAAAACCTGGATCCATGGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR GCA 72 bp TGTGTCCCTTCCACCTTGCTGGGAGAGGCAGAGCCCTaGAGATCAGCTTTGCTGGACTTCATAGGAGTTTTG +
Preference number: 3 (lower is better)
Translates to: CVPSTLLGEAEP*RSALLDFIGVL
Trigger: CAAAACTCCTATGAAGTCCAGCAAAGCTGATCTGCAGGGCTCTGCCTCTCCCAGCAAGGTGGAAGGGACACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR GCA 72 bp ACTTCTGGTAGGAGTCCTCATCAGGGAACTTATGCCTaGAGGTCAACATGGCTTCAGCCACAGGCAGCTGGT +
Preference number: 3 (lower is better)
Translates to: TSGRSPHQGTYA*RSTWLQPQAAG
Trigger: ACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTTCCCTGATGAGGACTCCTACCAGAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR CCA 72 bp AAATGCAGAGCCAGGTGGCCAGGCTATGTAGGGTGCTaGGCTGTCTCACTGTACCAGAACTCCAGGTTTTTC +
Preference number: 3 (lower is better)
Translates to: KCRARWPGYVGC*AVSLYQNSRFF
Trigger: GAAAAACCTGGAGTTCTGGTACAGTGAGACAGCCCAGCACCCTACATAGCCTGGCCACCTGGCTCTGCATTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR CCA 72 bp CCCTGCCATGACAGAAGTGGGAAGACAAAGCAGGGATaGGGACGCAAGCTGACACAGGAAAAGGGAGACATA +
Preference number: 3 (lower is better)
Translates to: PCHDRSGKTKQG*GRKLTQEKGDI
Trigger: TATGTCTCCCTTTTCCTGTGTCAGCTTGCGTCCCCATCCCTGCTTTGTCTTCCCACTTCTGTCATGGCAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR CCA 72 bp TGGTCGTATACCACCTTCCTTGGAATCTGTGTGCTGTaGCCCAGATCAGGAGATCGCTCACTGTCAGAGCTG +
Preference number: 3 (lower is better)
Translates to: WSYTTFLGICVL*PRSGDRSLSEL
Trigger: CAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAGATTCCAAGGAAGGTGGTATACGACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR CAA 90 bp GGAGTGCTCCTCTTCTGCCGAGGTGTGTGTGTCCCTTCCACCTTGCTGGGAGAGTCAGACAGCTTAGACTaGATTCCTTCATGGTCAATG +
Preference number: 3 (lower is better)
Translates to: GVLLFCRGVCVPSTLLGESDSLD*IPSWSM
Trigger: CATTGACCATGAAGGAATCAAGTCTAAGCTGTCTGA...CTCTCCCAGCAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR GCA 72 bp TCTGCCACTGGCACAGAGACATCCTTCACATTGCTGTaGAGGCCAAGTACTAAAGCGCCCTCATTAGGGTGT +
Preference number: 3 (lower is better)
Translates to: SATGTETSFTLL*RPSTKAPSLGC
Trigger: ACACCCTAATGAGGGCGCTTTAGTACTTGGCCTGCACAGCAATGTGAAGGATGTCTCTGTGCCAGTGGCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR CCA 72 bp ATGGGAACAGCACCCACCCTCCTGATTGTTTCATTCTaGGCAGCCACCTTCAAGCCTGTTTCCACAAGAGAG +
Preference number: 3 (lower is better)
Translates to: MGTAPTLLIVSF*AATFKPVSTRE
Trigger: CTCTCTTGTGGAAACAGGCTTGAAGGTGGCTGCCCAGAATGAAACAATCAGGAGGGTGGGTGCTGTTCCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR-3UTR CAA 90 bp TCCCCATCACCTGCAGTGGAGGGCGAGTCTTCAACAAGGCCCACTTTCACAACGGCCACAAACTTCTGTTaGATGTTAGGTTGCCTAGTG +
Preference number: 3 (lower is better)
Translates to: SPSPAVEGESSTRPTFTTATNFC*MLGCLV
Trigger: CACTAGGCAACCTAACATCAAACAGAAGTTTGTGGC...CGTTGTGAAAGTGGGCCTTGTTGAAGACTCGCCCTCCACTGCAGGTGATGGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR CAA 90 bp TGGTTCTCTCACTCAGGGGCTTGGAGAGCTGTCGCTCCTTCAGGGGAGTGCTCCTTAATCCAGGTAGATTaGACTTTTTCTAAAGCAGCC +
Preference number: 3 (lower is better)
Translates to: WFSHSGAWRAVAPSGECSLIQVD*TFSKAA
Trigger: GGCTGCTTTAGAAAAAGTCAAATCTACCTGGATTAA...GGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR TCA 72 bp CATTTCCAGAAAGGGTACCAGTGCTGCAGGGGTGAGTaGGGTGAAGGAAGGCCCAGAGTATTCAATTACAGG +
Preference number: 3 (lower is better)
Translates to: HFQKGYQCCRGE*GEGRPRVFNYR
Trigger: CCTGTAATTGAATACTCTGGGCCTTCCTTCACCTCACTCACCCCTGCAGCACTGGTACCCTTTCTGGAAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR TCA 72 bp GAAGTGGGAAGACAAAGCAGGGATGGGGACGCAAGCTaGCACAGGAAAAGGGAGACATATGACTGGGTAAGA +
Preference number: 3 (lower is better)
Translates to: EVGRQSRDGDAS*HRKRETYDWVR
Trigger: TCTTACCCAGTCATATGTCTCCCTTTTCCTGTGTCAGCTTGCGTCCCCATCCCTGCTTTGTCTTCCCACTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR TCA 72 bp AGGGCTGGGCAGCAGGAAGGGCTGGAGTCTTGGATGTaGAGAATGCCAAAACTATGTTCTGAGTGCAGTTCT +
Preference number: 3 (lower is better)
Translates to: RAGQQEGLESWM*RMPKLCSECSS
Trigger: AGAACTGCACTCAGAACATAGTTTTGGCATTCTTCACATCCAAGACTCCAGCCCTTCCTGCTGCCCAGCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR CCA 72 bp GATTTGAGATGCCAGGAAATCATGCATGGGAGAGACTaGGAAGGCCCCTTCAATCCCAGAAATACCGGGATG +
Preference number: 3 (lower is better)
Translates to: DLRCQEIMHGRD*EGPFNPRNTGM
Trigger: CATCCCGGTATTTCTGGGATTGAAGGGGCCTTCCCAGTCTCTCCCATGCATGATTTCCTGGCATCTCAAATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR-3UTR CAA 90 bp AAGTGGGAAGACAAAGCAGGGATGGGGACGCAAGCTGACACAGGAAAAGGGAGAGGACATCCAAGTGATTaGAGATGCCAGGAAATCATG +
Preference number: 3 (lower is better)
Translates to: KWEDKAGMGTQADTGKGRGHPSD*RCQEIM
Trigger: CATGATTTCCTGGCATCTCAAATCACTTGGATGTCC...TCTCCCTTTTCCTGTGTCAGCTTGCGTCCCCATCCCTGCTTTGTCTTCCCACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR-3UTR CAA 90 bp GTAGTCCACCTGGAGACCAATCACATCCCCATATGGGCTATTTGGGCTCCCCACAACATAATCTGCAGTTaGTTGGCATCTCGCTTAAGG +
Preference number: 3 (lower is better)
Translates to: VVHLETNHIPIWAIWAPHNIICS*LASRLR
Trigger: CCTTAAGCGAGATGCCAACAAACTGCAGATTATGTT...GTGGGGAGCCCAAATAGCCCATATGGGGATGTGATTGGTCTCCAGGTGGACTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR CAA 90 bp TCCCCATCACCTGCAGTGGAGGGCGAGTCTTCAACAAGGCCCACTTTCACAACGAGTCAAGCTGTCATCTaGGTTTTTAATCCAGGTAGA +
Preference number: 3 (lower is better)
Translates to: SPSPAVEGESSTRPTFTTSQAVI*VFNPGR
Trigger: TCTACCTGGATTAAAAACCAAGATGACAGCTTGACT...CGTTGTGAAAGTGGGCCTTGTTGAAGACTCGCCCTCCACTGCAGGTGATGGGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR GCA 72 bp TGTGGTGTTCACCAGGATGACATTTTCAGGGAGGGCTaGATCCGATACCAGGATCTGATTCAGTTGGTCGTA +
Preference number: 3 (lower is better)
Translates to: CGVHQDDIFREG*IRYQDLIQLVV
Trigger: TACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCCTGGTGAACACCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR CCA 72 bp TGCTTTCTGTTTCCTCCATCTCAGGGCCACTGTCGCTaGGGTTGTACATCTCTAGACTGTCGTACAGTTCAT +
Preference number: 3 (lower is better)
Translates to: CFLFPPSQGHCR*GCTSLDCRTVH
Trigger: ATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR CAA 90 bp CTGTGTGCTGTGGCCCAGATCAGGAGATCGCTCACTGTCAGAGCTGTTGGTTCTATAATCTGCAGTTTGTaGGCATCTCGCTTAAGGAAA +
Preference number: 3 (lower is better)
Translates to: LCAVAQIRRSLTVRAVGSIICSL*ASRLRK
Trigger: TTTCCTTAAGCGAGATGCCAACAAACTGCAGATTAT...AGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR CAA 90 bp CTGGACTTCATAGGAGTTTTGACTTTTTCTGGTACAACCAGACTTGTGCTCACATTCCCGAGGCTGCCCTaGCTGTTGAGACTGCCAATC +
Preference number: 3 (lower is better)
Translates to: LDFIGVLTFSGTTRLVLTFPRLP*LLRLPI
Trigger: GATTGGCAGTCTCAACAGCAAGGGCAGCCTCGGGAA...TGTGAGCACAAGTCTGGTTGTACCAGAAAAAGTCAAAACTCCTATGAAGTCCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR TCA 72 bp ACATTTTCAGGGAGGGCTGCATCCGATACCAGGATCTaGTTCAGTTGGTCGTATACCACCTTCCTTGGAATC +
Preference number: 3 (lower is better)
Translates to: TFSGRAASDTRI*FSWSYTTFLGI
Trigger: GATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR GCA 72 bp CACACACAAAACACAGGACATCCAAGTGATTTGAGATaGCAGGAAATCATGCATGGGAGAGACTGGGAAGGC +
Preference number: 3 (lower is better)
Translates to: HTQNTGHPSDLR*QEIMHGRDWEG
Trigger: GCCTTCCCAGTCTCTCCCATGCATGATTTCCTGGCATCTCAAATCACTTGGATGTCCTGTGTTTTGTGTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR CCA 72 bp AACACAGAAGTGTATACTCCGTTCTACCTGTGCTTCTaGCTTATTCCAAGTGGAGTCACTTCTGCTGAGGGC +
Preference number: 3 (lower is better)
Translates to: NTEVYTPFYLCF*LIPSGVTSAEG
Trigger: GCCCTCAGCAGAAGTGACTCCACTTGGAATAAGCCAGAAGCACAGGTAGAACGGAGTATACACTTCTGTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR-3UTR CAA 90 bp CCAAGTACTAAAGCGCCCTCATTAGGGTGTTGCATCACCTCTGCCATGTTGATGGTACCGCTTCCTCCTTaGCAACATAATCTGCAGTTT +
Preference number: 3 (lower is better)
Translates to: PSTKAPSLGCCITSAMLMVPLPP*QHNLQF
Trigger: AAACTGCAGATTATGTTGCAAAGGAGGAAGCGGTAC...CATCAACATGGCAGAGGTGATGCAACACCCTAATGAGGGCGCTTTAGTACTTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR TCA 72 bp GGAGTCTTGGATGTGAAGAATGCCAAAACTATGTTCTaGGTGCAGTTCTGTGCCACACTGCTAGGAAGCAGT +
Preference number: 3 (lower is better)
Translates to: GVLDVKNAKTMF*VQFCATLLGSS
Trigger: ACTGCTTCCTAGCAGTGTGGCACAGAACTGCACTCAGAACATAGTTTTGGCATTCTTCACATCCAAGACTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR GCA 72 bp CCCAAGATAGTTCGGTTCTTGTACCGCTTCCTCCTTTaGAACATAATCTGCAGTTTGTTGGCATCTCGCTTA +
Preference number: 3 (lower is better)
Translates to: PKIVRFLYRFLL*NIICSLLASRL
Trigger: TAAGCGAGATGCCAACAAACTGCAGATTATGTTGCAAAGGAGGAAGCGGTACAAGAACCGAACTATCTTGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR-3UTR CAA 90 bp ATGGCTGAGGTTGAGGTCAGTTTCCTCCGAGTCTTCTTTACTTTCCGAAGATCTGGAAGGATGATCTCATaGGAGCGAAGAATCCTTTTT +
Preference number: 3 (lower is better)
Translates to: MAEVEVSFLRVFFTFRRSGRMIS*ERRILF
Trigger: AAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCC...AGATCTTCGGAAAGTAAAGAAGACTCGGAGGAAACTGACCTCAACCTCAGCCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
CDS-3UTR GCA 90 bp GAAGTGCCAGAGGGCATGGAGGCTGGGCTAGCTCTGTCACGTGTCCTCAGCCTCTGCTGCGGCTGCTGCTaGGGGGACTGGGCGACCCCA +
Preference number: 4 (lower is better)
Translates to: EVPEGMEAGLALSRVLSLCCGCC*GDWATP
Trigger: TGGGGTCGCCCAGTCCCCGCAGCAGCAGCCGCAGCA...GAGGCTGAGGACACGTGACAGAGCTAGCCCAGCCTCCATGCCCTCTGGCACTTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR TCA 90 bp GGCAGGCGAGAAACCTGCACCGAGCGGAAGACACTCTTGAGGGTGTTCTTTGAGGGGGGCGTCGGCTGTTaGGGCTGCGGCGGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: GRRETCTERKTLLRVFFEGGVGC*GCGGCC
Trigger: GCAGCAGCCGCCGCAGCCTCAACAGCCGACGCCCCC...CTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCC
66% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
CDS-3UTR GCA 90 bp GGCCTCTTTCTGCTGCCCTGCCATGACAGAAGTGGGAAGACAAAGCAGGGATGGCAGAGCCCCGCTGACTaGTGCCGCCCCCGGAGCCTC +
Preference number: 4 (lower is better)
Translates to: GLFLLPCHDRSGKTKQGWQSPAD*CRPRSL
Trigger: GAGGCTCCGGGGGCGGCAGCAGTCAGCGGGGCTCTG...CCATCCCTGCTTTGTCTTCCCACTTCTGTCATGGCAGGGCAGCAGAAAGAGGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp TGGTTCTCTCACTCAGGGGCTTGGAGAGCTGTCGCTCCTTCAGGGGAGTGCTCCACGAGGAGGACGAGGTaGCCTGGGCCAGCTTGGGGG +
Preference number: 4 (lower is better)
Translates to: WFSHSGAWRAVAPSGECSTRRTR*PGPAWG
Trigger: CCCCCAAGCTGGCCCAGGCCACCTCGTCCTCCTCGT...GGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
CDS-3UTR GCA 90 bp TACCGGGATGCCCAGGTGCCAGCCTCATTCCCCCTACTGGGAAGTTGCGCGGCAGCTCCTTCAGGGGAGTaGTCCTCTTCTGCCGAGGTG +
Preference number: 4 (lower is better)
Translates to: YRDAQVPASFPLLGSCAAAPSGE*SSSAEV
Trigger: CACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGC...TGCCGCGCAACTTCCCAGTAGGGGGAATGAGGCTGGCACCTGGGCATCCCGGTA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR GCA 90 bp CAGGGATTATGGGTACCAGAGTCAGGACCACCCAGCTCTGGGCCTGGAACAGGACTGGCTGCCCACAGCTaGCACCTTGACCGGCCTCGG +
Preference number: 4 (lower is better)
Translates to: QGLWVPESGPPSSGPGTGLAAHS*HLDRPR
Trigger: CCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAG...TCCTGTTCCAGGCCCAGAGCTGGGTGGTCCTGACTCTGGTACCCATAATCCCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp CAGGGATTATGGGTACCAGAGTCAGGACCACCCAGCTCTGGGCCTGGAACAGGACCACCGCGACGGCCATaGAGGTGGAGGTGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: QGLWVPESGPPSSGPGTGPPRRP*RWRWRR
Trigger: CCTCCTCCACCTCCACCTCCATGGCCGTCGCGGTGG...TCCTGTTCCAGGCCCAGAGCTGGGTGGTCCTGACTCTGGTACCCATAATCCCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR GCA 90 bp TCGTATACCACCTTCCTTGGAATCTGTGTGCTGTGGCCCAGATCAGGAGATCGCCAGAGCCCCGCTGACTaGTGCCGCCCCCGGAGCCTC +
Preference number: 4 (lower is better)
Translates to: SYTTFLGICVLWPRSGDRQSPAD*CRPRSL
Trigger: GAGGCTCCGGGGGCGGCAGCAGTCAGCGGGGCTCTG...GCGATCTCCTGATCTGGGCCACAGCACACAGATTCCAAGGAAGGTGGTATACGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
CDS-3UTR GCA 90 bp CCGTTCTACCTGTGCTTCTGGCTTATTCCAAGTGGAGTCACTTCTGCTGAGGGCGGCTGCTGCTGCGGCTaGTGCTGCGGGGACTGGGCG +
Preference number: 4 (lower is better)
Translates to: PFYLCFWLIPSGVTSAEGGCCCG*CCGDWA
Trigger: CGCCCAGTCCCCGCAGCAGCAGCCGCAGCAGCAGCC...GCCCTCAGCAGAAGTGACTCCACTTGGAATAAGCCAGAAGCACAGGTAGAACGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR GCA 90 bp GGAGAGACTGGGAAGGCCCCTTCAATCCCAGAAATACCGGGATGCCCAGGTGCCGCCACGTACTGGCCCTaGCAGTCTGTGGTGTTCACC +
Preference number: 4 (lower is better)
Translates to: GETGKAPSIPEIPGCPGAATYWP*QSVVFT
Trigger: GGTGAACACCACAGACTGGCAGGGCCAGTACGTGGC...GGCACCTGGGCATCCCGGTATTTCTGGGATTGAAGGGGCCTTCCCAGTCTCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp AGCAAGACTGTGACGGTGCAGAACCTCAGGCAGCGGACCATGGATCCAGGTTTTTGGCCTGGGCCAGCTTaGGGGGCGTCGGCTGTTGAG +
Preference number: 4 (lower is better)
Translates to: SKTVTVQNLRQRTMDPGFWPGPA*GASAVE
Trigger: CTCAACAGCCGACGCCCCCCAAGCTGGCCCAGGCCA...AAAACCTGGATCCATGGTCCGCTGCCTGAGGTTCTGCACCGTCACAGTCTTGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp ATGGTGGGTTCTGGGGAAAAAGAGGCTCTGACATGGGAACAGCACCCACCCTCCCGACGGCCATGGAGGTaGAGGTGGAGGAGGACGAGG +
Preference number: 4 (lower is better)
Translates to: MVGSGEKEALTWEQHPPSRRPWR*RWRRTR
Trigger: CCTCGTCCTCCTCCACCTCCACCTCCATGGCCGTCG...GGAGGGTGGGTGCTGTTCCCATGTCAGAGCCTCTTTTTCCCCAGAACCCACCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp AACTCCATAGGACTGGTGGTGTCTTTCCCGAGGCTGCCCTTGCTGTTGAGACTGCCACCGCGACGGCCATaGAGGTGGAGGTGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: NSIGLVVSFPRLPLLLRLPPRRP*RWRWRR
Trigger: CCTCCTCCACCTCCACCTCCATGGCCGTCGCGGTGG...CAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTCCTATGGAGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
CDS-3UTR CCA 90 bp GAAGTGCCAGAGGGCATGGAGGCTGGGCTAGCTCTGTCACGTGTCCTCAGCCTCATGGTGCCAGAAAGCTaGGCTTCCCCTGCATGTGGC +
Preference number: 4 (lower is better)
Translates to: EVPEGMEAGLALSRVLSLMVPES*ASPACG
Trigger: GCCACATGCAGGGGAAGCCCAGCTTTCTGGCACCAT...GAGGCTGAGGACACGTGACAGAGCTAGCCCAGCCTCCATGCCCTCTGGCACTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR TCA 90 bp CCACAAGAGAGGAACACAGAAGTGTATACTCCGTTCTACCTGTGCTTCTGGCTTGGGGGCGTCGGCTGTTaGGGCTGCGGCGGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: PQERNTEVYTPFYLCFWLGGVGC*GCGGCC
Trigger: GCAGCAGCCGCCGCAGCCTCAACAGCCGACGCCCCC...AAGCCAGAAGCACAGGTAGAACGGAGTATACACTTCTGTGTTCCTCTCTTGTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR TCA 90 bp GGAGAGACTGGGAAGGCCCCTTCAATCCCAGAAATACCGGGATGCCCAGGTGCCCTGGACCTCCACTGTTaGGCAGGTGCATACCACAGG +
Preference number: 4 (lower is better)
Translates to: GETGKAPSIPEIPGCPGALDLHC*AGAYHR
Trigger: CCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAG...GGCACCTGGGCATCCCGGTATTTCTGGGATTGAAGGGGCCTTCCCAGTCTCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR GCA 90 bp CGGTGCAGAACCTCAGGCAGCGGACCATGGATCCAGGTTTTAACCACCCACCAGGGCAGGCGAGAAACCTaGACCGAGCGGAAGACACTC +
Preference number: 4 (lower is better)
Translates to: RCRTSGSGPWIQVLTTHQGRRET*TERKTL
Trigger: GAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCC...CTGGTGGGTGGTTAAAACCTGGATCCATGGTCCGCTGCCTGAGGTTCTGCACCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp AACTCCATAGGACTGGTGGTGTCTTTCCCGAGGCTGCCCTTGCTGTTGAGACTGGCCTGGGCACGCAGCTaGATGAGCTCCGGTCCACCT +
Preference number: 4 (lower is better)
Translates to: NSIGLVVSFPRLPLLLRLAWARS*MSSGPP
Trigger: AGGTGGACCGGAGCTCATCCAGCTGCGTGCCCAGGC...CAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTCCTATGGAGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
CDS-3UTR CCA 90 bp TACCGGGATGCCCAGGTGCCAGCCTCATTCCCCCTACTGGGAAGTTGCGCGGCAAGGGAGAAGGTTAACTaGAGCTCTGTCTCCACCAGG +
Preference number: 4 (lower is better)
Translates to: YRDAQVPASFPLLGSCAAREKVN*SSVSTR
Trigger: CCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCT...TGCCGCGCAACTTCCCAGTAGGGGGAATGAGGCTGGCACCTGGGCATCCCGGTA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp CTCTGGGCCTGGAACAGGAGGAAGGGTAGTCCAGAGATGGGCTGGGCAGTGAGAGTAACCCAGCCAGTCTaGGGTCTTGCTGGCAAGGGA +
Preference number: 4 (lower is better)
Translates to: LWAWNRRKGSPEMGWAVRVTQPV*GLAGKG
Trigger: TCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTAC...TCTCACTGCCCAGCCCATCTCTGGACTACCCTTCCTCCTGTTCCAGGCCCAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp GAAGTGCCAGAGGGCATGGAGGCTGGGCTAGCTCTGTCACGTGTCCTCAGCCTCTCAGCCACAGGCAGCTaGTGTGTTGTGGTAGCTCCA +
Preference number: 4 (lower is better)
Translates to: EVPEGMEAGLALSRVLSLSATGS*CVVVAP
Trigger: TGGAGCTACCACAACACACCAGCTGCCTGTGGCTGA...GAGGCTGAGGACACGTGACAGAGCTAGCCCAGCCTCCATGCCCTCTGGCACTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp CCTGCTGGAGGAAGGCAGGGGGAGTACAACAGGCAACAGAGCCTTGGAAATGCAGGCACTGCTCATGGATaGGGACGAGGGAGGGGTAGC +
Preference number: 4 (lower is better)
Translates to: PAGGRQGEYNRQQSLGNAGTAHG*GRGRGS
Trigger: GCTACCCCTCCCTCGTCCCCATCCATGAGCAGTGCC...TGCATTTCCAAGGCTCTGTTGCCTGTTGTACTCCCCCTGCCTTCCTCCAGCAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR TCA 90 bp TGGGAGAGACTGGGAAGGCCCCTTCAATCCCAGAAATACCGGGATGCCCAGGTGGCCAATCTCCGTCTGTaGGCTGGACTGAGACATCCC +
Preference number: 4 (lower is better)
Translates to: WERLGRPLQSQKYRDAQVANLRL*AGLRHP
Trigger: GGGATGTCTCAGTCCAGCTCACAGACGGAGATTGGC...CACCTGGGCATCCCGGTATTTCTGGGATTGAAGGGGCCTTCCCAGTCTCTCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR TCA 90 bp ATGGTGGGTTCTGGGGAAAAAGAGGCTCTGACATGGGAACAGCACCCACCCTCCCGGCCTCGGCATGGATaGGTTGCAGTTGCAGTAGCG +
Preference number: 4 (lower is better)
Translates to: MVGSGEKEALTWEQHPPSRPRHG*VAVAVA
Trigger: CGCTACTGCAACTGCAACTCATCCATGCCGAGGCCG...GGAGGGTGGGTGCTGTTCCCATGTCAGAGCCTCTTTTTCCCCAGAACCCACCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp GAAGTGCCAGAGGGCATGGAGGCTGGGCTAGCTCTGTCACGTGTCCTCAGCCTCCACCAGGCCACTGGCTaGAAGGATGATCTCATTGGA +
Preference number: 4 (lower is better)
Translates to: EVPEGMEAGLALSRVLSLHQATG*KDDLIG
Trigger: TCCAATGAGATCATCCTTCCAGCCAGTGGCCTGGTG...GAGGCTGAGGACACGTGACAGAGCTAGCCCAGCCTCCATGCCCTCTGGCACTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp CAGGGATTATGGGTACCAGAGTCAGGACCACCCAGCTCTGGGCCTGGAACAGGAGTGCTTGACATGAGTTaGCCACTGGGCTGCCAGCTG +
Preference number: 4 (lower is better)
Translates to: QGLWVPESGPPSSGPGTGVLDMS*PLGCQL
Trigger: CAGCTGGCAGCCCAGTGGCCAACTCATGTCAAGCAC...TCCTGTTCCAGGCCCAGAGCTGGGTGGTCCTGACTCTGGTACCCATAATCCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR TCA 90 bp GGGGTGAGTGAGGTGAAGGAAGGCCCAGAGTATTCAATTACAGGGATTATGGGTGGGCACGCAGCTGGATaGGCTCCGGTCCACCTCCCA +
Preference number: 4 (lower is better)
Translates to: GVSEVKEGPEYSITGIMGGHAAG*APVHLP
Trigger: TGGGAGGTGGACCGGAGCTCATCCAGCTGCGTGCCC...ACCCATAATCCCTGTAATTGAATACTCTGGGCCTTCCTTCACCTCACTCACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR TCA 90 bp GGCCTCTTTCTGCTGCCCTGCCATGACAGAAGTGGGAAGACAAAGCAGGGATGGGGAAAGTGCTTGACATaGGTTGGCCACTGGGCTGCC +
Preference number: 4 (lower is better)
Translates to: GLFLLPCHDRSGKTKQGWGKCLT*VGHWAA
Trigger: GGCAGCCCAGTGGCCAACTCATGTCAAGCACTTTCC...CCATCCCTGCTTTGTCTTCCCACTTCTGTCATGGCAGGGCAGCAGAAAGAGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR TCA 90 bp TGGTTCTCTCACTCAGGGGCTTGGAGAGCTGTCGCTCCTTCAGGGGAGTGCTCCACATGCCACAGCCAATaGATCCAGAGAACCTGCAGC +
Preference number: 4 (lower is better)
Translates to: WFSHSGAWRAVAPSGECSTCHSQ*IQRTCS
Trigger: GCTGCAGGTTCTCTGGATTCATTGGCTGTGGCATGT...GGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
CDS-3UTR GCA 90 bp TGCTGGAGGAAGGCAGGGGGAGTACAACAGGCAACAGAGCCTTGGAAATGCAGAGTGTCCCTTCCACCTTaGTGGGAGAGGCAGAGCCCT +
Preference number: 4 (lower is better)
Translates to: CWRKAGGVQQATEPWKCRVSLPP*WERQSP
Trigger: AGGGCTCTGCCTCTCCCAGCAAGGTGGAAGGGACAC...TCTGCATTTCCAAGGCTCTGTTGCCTGTTGTACTCCCCCTGCCTTCCTCCAGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp GGGGTGAGTGAGGTGAAGGAAGGCCCAGAGTATTCAATTACAGGGATTATGGGTACGAGGAGGACGAGGTaGCCTGGGCCAGCTTGGGGG +
Preference number: 4 (lower is better)
Translates to: GVSEVKEGPEYSITGIMGTRRTR*PGPAWG
Trigger: CCCCCAAGCTGGCCCAGGCCACCTCGTCCTCCTCGT...ACCCATAATCCCTGTAATTGAATACTCTGGGCCTTCCTTCACCTCACTCACCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp ATTACAGGGATTATGGGTACCAGAGTCAGGACCACCCAGCTCTGGGCCTGGAACTCCCTTCCACCTTGCTaGGAGAGGCAGAGCCCTGCA +
Preference number: 4 (lower is better)
Translates to: ITGIMGTRVRTTQLWAWNSLPPC*ERQSPA
Trigger: TGCAGGGCTCTGCCTCTCCCAGCAAGGTGGAAGGGA...GTTCCAGGCCCAGAGCTGGGTGGTCCTGACTCTGGTACCCATAATCCCTGTAAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp GAAGTGCCAGAGGGCATGGAGGCTGGGCTAGCTCTGTCACGTGTCCTCAGCCTCGTATACCACCTTCCTTaGAATCTGTGTGCTGTGGCC +
Preference number: 4 (lower is better)
Translates to: EVPEGMEAGLALSRVLSLVYHLP*NLCAVA
Trigger: GGCCACAGCACACAGATTCCAAGGAAGGTGGTATAC...GAGGCTGAGGACACGTGACAGAGCTAGCCCAGCCTCCATGCCCTCTGGCACTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp ATGGTGGGTTCTGGGGAAAAAGAGGCTCTGACATGGGAACAGCACCCACCCTCCGCCTGCAGGTCAACATaGCTTCAGCCACAGGCAGCT +
Preference number: 4 (lower is better)
Translates to: MVGSGEKEALTWEQHPPSACRST*LQPQAA
Trigger: AGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGC...GGAGGGTGGGTGCTGTTCCCATGTCAGAGCCTCTTTTTCCCCAGAACCCACCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp CTCTGGGCCTGGAACAGGAGGAAGGGTAGTCCAGAGATGGGCTGGGCAGTGAGAATGCCCTCGATGACCTaGCTCTTAGAATCCACCTCC +
Preference number: 4 (lower is better)
Translates to: LWAWNRRKGSPEMGWAVRMPSMT*LLESTS
Trigger: GGAGGTGGATTCTAAGAGCCAGGTCATCGAGGGCAT...TCTCACTGCCCAGCCCATCTCTGGACTACCCTTCCTCCTGTTCCAGGCCCAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR CAA 72 bp GAGGAAGGCAGGGGGAGTACAACAGGCAACAGAGCCTaGGAAATGCAGAGCCAGGTGGCCAGGCTATGTAGG +
Preference number: 4 (lower is better)
Translates to: EEGRGSTTGNRA*EMQSQVARLCR
Trigger: CCTACATAGCCTGGCCACCTGGCTCTGCATTTCCAAGGCTCTGTTGCCTGTTGTACTCCCCCTGCCTTCCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR CAA 72 bp GAAGGGAGGAGCATGACCCTGCCTTGGGAGGCAAGCTaGAGGATGGTGGGTTCTGGGGAAAAAGAGGCTCTG +
Preference number: 4 (lower is better)
Translates to: EGRSMTLPWEAS*RMVGSGEKEAL
Trigger: CAGAGCCTCTTTTTCCCCAGAACCCACCATCCTCAAGCTTGCCTCCCAAGGCAGGGTCATGCTCCTCCCTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR CAA 72 bp TGGCCCAGATCAGGAGATCGCTCACTGTCAGAGCTGTaGGTTCTCTCACTCAGGGGCTTGGAGAGCTGTCGC +
Preference number: 4 (lower is better)
Translates to: WPRSGDRSLSEL*VLSLRGLESCR
Trigger: GCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
CDS-3UTR TCA 90 bp GGAGAGACTGGGAAGGCCCCTTCAATCCCAGAAATACCGGGATGCCCAGGTGCCCCTCGTCAGAAACTTTaGATCGTTTCAGGAGGGCCA +
Preference number: 4 (lower is better)
Translates to: GETGKAPSIPEIPGCPGAPRQKL*IVSGGP
Trigger: TGGCCCTCCTGAAACGATTCAAAGTTTCTGACGAGG...GGCACCTGGGCATCCCGGTATTTCTGGGATTGAAGGGGCCTTCCCAGTCTCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR TCA 90 bp ATTACAGGGATTATGGGTACCAGAGTCAGGACCACCCAGCTCTGGGCCTGGAACCCTCAAAGAAGGGCTTaGGCTTGGGCTTTGGGGTGC +
Preference number: 4 (lower is better)
Translates to: ITGIMGTRVRTTQLWAWNPQRRA*AWALGC
Trigger: GCACCCCAAAGCCCAAGCTCAAGCCCTTCTTTGAGG...GTTCCAGGCCCAGAGCTGGGTGGTCCTGACTCTGGTACCCATAATCCCTGTAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR TCA 90 bp AGTGGGAAGACAAAGCAGGGATGGGGACGCAAGCTGACACAGGAAAAGGGAGACGGCTGCCCTTGCTGTTaGGACTGCCAATCTCCGTCT +
Preference number: 4 (lower is better)
Translates to: SGKTKQGWGRKLTQEKGDGCPCC*DCQSPS
Trigger: AGACGGAGATTGGCAGTCTCAACAGCAAGGGCAGCC...GTCTCCCTTTTCCTGTGTCAGCTTGCGTCCCCATCCCTGCTTTGTCTTCCCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR TCA 90 bp TGTTTCATTCTGGGCAGCCACCTTCAAGCCTGTTTCCACAAGAGAGGAACACAGCCACAGCTGCCACCTTaGCCGGCCTCGGCATGGATG +
Preference number: 4 (lower is better)
Translates to: CFILGSHLQACFHKRGTQPQLPP*PASAWM
Trigger: CATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGG...CTGTGTTCCTCTCTTGTGGAAACAGGCTTGAAGGTGGCTGCCCAGAATGAAACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR TCA 90 bp AGTGGGAAGACAAAGCAGGGATGGGGACGCAAGCTGACACAGGAAAAGGGAGACAAGGCTGACCACAGGTaGATCGTCCCCATCACCTGC +
Preference number: 4 (lower is better)
Translates to: SGKTKQGWGRKLTQEKGDKADHR*IVPITC
Trigger: GCAGGTGATGGGGACGATTCACCTGTGGTCAGCCTT...GTCTCCCTTTTCCTGTGTCAGCTTGCGTCCCCATCCCTGCTTTGTCTTCCCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR TCA 90 bp GGAGAGACTGGGAAGGCCCCTTCAATCCCAGAAATACCGGGATGCCCAGGTGCCCTTGAGGGTGTTCTTTaGGCTGGCATCCCTCTTATC +
Preference number: 4 (lower is better)
Translates to: GETGKAPSIPEIPGCPGALEGVL*AGIPLI
Trigger: GATAAGAGGGATGCCAGCTCAAAGAACACCCTCAAG...GGCACCTGGGCATCCCGGTATTTCTGGGATTGAAGGGGCCTTCCCAGTCTCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR TCA 90 bp TGGGAGAGACTGGGAAGGCCCCTTCAATCCCAGAAATACCGGGATGCCCAGGTGTGGTCTTGCTGCCACTaGAGAGTCCCACTGGAAAGT +
Preference number: 4 (lower is better)
Translates to: WERLGRPLQSQKYRDAQVWSCCH*RVPLES
Trigger: ACTTTCCAGTGGGACTCTTCAGTGGCAGCAAGACCA...CACCTGGGCATCCCGGTATTTCTGGGATTGAAGGGGCCTTCCCAGTCTCTCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR GCA 90 bp CTTCCTCTGGTCTTGAAGCAATTCAGCCACGTACTGGCCCTGCCAGTCTGTGGTGCATACAAATTCATCTaGACTGGGGCGGGGGTGCGG +
Preference number: 4 (lower is better)
Translates to: LPLVLKQFSHVLALPVCGAYKFI*TGAGVR
Trigger: CCGCACCCCCGCCCCAGTGCAGATGAATTTGTATGC...ACCACAGACTGGCAGGGCCAGTACGTGGCTGAATTGCTTCAAGACCAGAGGAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
CDS-3UTR GCA 90 bp AGCAAGACTGTGACGGTGCAGAACCTCAGGCAGCGGACCATGGATCCAGGTTTTGGAGAGGCAGAGCCCTaGAGATCAGCTTTGCTGGAC +
Preference number: 4 (lower is better)
Translates to: SKTVTVQNLRQRTMDPGFGEAEP*RSALLD
Trigger: GTCCAGCAAAGCTGATCTGCAGGGCTCTGCCTCTCC...AAAACCTGGATCCATGGTCCGCTGCCTGAGGTTCTGCACCGTCACAGTCTTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp GGGGTGAGTGAGGTGAAGGAAGGCCCAGAGTATTCAATTACAGGGATTATGGGTGCCTGGGCACGCAGCTaGATGAGCTCCGGTCCACCT +
Preference number: 4 (lower is better)
Translates to: GVSEVKEGPEYSITGIMGAWARS*MSSGPP
Trigger: AGGTGGACCGGAGCTCATCCAGCTGCGTGCCCAGGC...ACCCATAATCCCTGTAATTGAATACTCTGGGCCTTCCTTCACCTCACTCACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp AAGTGGGAAGACAAAGCAGGGATGGGGACGCAAGCTGACACAGGAAAAGGGAGAGCGGACAGCACTGCCTaGACCTCCACTGTTGAGCAG +
Preference number: 4 (lower is better)
Translates to: KWEDKAGMGTQADTGKGRADSTA*TSTVEQ
Trigger: CTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGC...TCTCCCTTTTCCTGTGTCAGCTTGCGTCCCCATCCCTGCTTTGTCTTCCCACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp ATGGTGGGTTCTGGGGAAAAAGAGGCTCTGACATGGGAACAGCACCCACCCTCCCCCCATCACCTGCAGTaGAGGGCGAGTCTTCAACAA +
Preference number: 4 (lower is better)
Translates to: MVGSGEKEALTWEQHPPSPHHLQ*RASLQQ
Trigger: TTGTTGAAGACTCGCCCTCCACTGCAGGTGATGGGG...GGAGGGTGGGTGCTGTTCCCATGTCAGAGCCTCTTTTTCCCCAGAACCCACCAT
57% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR TCA 90 bp ATGGCTGAGGTTGAGGTCAGTTTCCTCCGAGTCTTCTTTACTTTCCGAAGATCTGGGCACGCAGCTGGATaGGCTCCGGTCCACCTCCCA +
Preference number: 4 (lower is better)
Translates to: MAEVEVSFLRVFFTFRRSGHAAG*APVHLP
Trigger: TGGGAGGTGGACCGGAGCTCATCCAGCTGCGTGCCC...AGATCTTCGGAAAGTAAAGAAGACTCGGAGGAAACTGACCTCAACCTCAGCCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
CDS-3UTR TCA 90 bp ATTACAGGGATTATGGGTACCAGAGTCAGGACCACCCAGCTCTGGGCCTGGAACACTGCCTTCCTGCTCTaGGGAGAAGCTTTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: ITGIMGTRVRTTQLWAWNTAFLL*GEAFLL
Trigger: GAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGT...GTTCCAGGCCCAGAGCTGGGTGGTCCTGACTCTGGTACCCATAATCCCTGTAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR TCA 90 bp GGCCTCTTTCTGCTGCCCTGCCATGACAGAAGTGGGAAGACAAAGCAGGGATGGGTCTGTGAGCTGGACTaGGACATCCCCTCAAAGAAG +
Preference number: 4 (lower is better)
Translates to: GLFLLPCHDRSGKTKQGWVCELD*DIPSKK
Trigger: CTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGAC...CCATCCCTGCTTTGTCTTCCCACTTCTGTCATGGCAGGGCAGCAGAAAGAGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR TCA 90 bp ATGGTGGGTTCTGGGGAAAAAGAGGCTCTGACATGGGAACAGCACCCACCCTCCTGGTGTTCACCAGGATaGCATTTTCAGGGAGGGCTG +
Preference number: 4 (lower is better)
Translates to: MVGSGEKEALTWEQHPPSWCSPG*HFQGGL
Trigger: CAGCCCTCCCTGAAAATGTCATCCTGGTGAACACCA...GGAGGGTGGGTGCTGTTCCCATGTCAGAGCCTCTTTTTCCCCAGAACCCACCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR TCA 90 bp GGCCTCTTTCTGCTGCCCTGCCATGACAGAAGTGGGAAGACAAAGCAGGGATGGAGCGGAAGACACTCTTaGGGGTGTTCTTTGAGCTGG +
Preference number: 4 (lower is better)
Translates to: GLFLLPCHDRSGKTKQGWSGRHS*GCSLSW
Trigger: CCAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCT...CCATCCCTGCTTTGTCTTCCCACTTCTGTCATGGCAGGGCAGCAGAAAGAGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR TCA 90 bp TGCTGGAGGAAGGCAGGGGGAGTACAACAGGCAACAGAGCCTTGGAAATGCAGACCACTGGAAAGTGCTTaGCATGAGTTGGCCACTGGG +
Preference number: 4 (lower is better)
Translates to: CWRKAGGVQQATEPWKCRPLESA*HELATG
Trigger: CCCAGTGGCCAACTCATGTCAAGCACTTTCCAGTGG...TCTGCATTTCCAAGGCTCTGTTGCCTGTTGTACTCCCCCTGCCTTCCTCCAGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR GCA 90 bp AGTGGGAAGACAAAGCAGGGATGGGGACGCAAGCTGACACAGGAAAAGGGAGACTCCACTTCCCGAATCTaGTCCCGGGACACGTGTTCT +
Preference number: 4 (lower is better)
Translates to: SGKTKQGWGRKLTQEKGDSTSRI*SRDTCS
Trigger: AGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGA...GTCTCCCTTTTCCTGTGTCAGCTTGCGTCCCCATCCCTGCTTTGTCTTCCCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp ATCCGATACCAGGATCTGATTCAGTTGGTCGTATACCACCTTCCTTGGAATCTGTGGCCTGGGCCAGCTTaGGGGGCGTCGGCTGTTGAG +
Preference number: 4 (lower is better)
Translates to: IRYQDLIQLVVYHLPWNLWPGPA*GASAVE
Trigger: CTCAACAGCCGACGCCCCCCAAGCTGGCCCAGGCCA...CAGATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
CDS-3UTR CCA 90 bp AGCAAGACTGTGACGGTGCAGAACCTCAGGCAGCGGACCATGGATCCAGGTTTTCAGGGCCACTGTCGCTaGGGTTGTACATCTCTAGAC +
Preference number: 4 (lower is better)
Translates to: SKTVTVQNLRQRTMDPGFQGHCR*GCTSLD
Trigger: GTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTG...AAAACCTGGATCCATGGTCCGCTGCCTGAGGTTCTGCACCGTCACAGTCTTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp ATGGTGGGTTCTGGGGAAAAAGAGGCTCTGACATGGGAACAGCACCCACCCTCCTCTCCGTCTGTGAGCTaGACTGAGACATCCCCTCAA +
Preference number: 4 (lower is better)
Translates to: MVGSGEKEALTWEQHPPSSPSVS*TETSPQ
Trigger: TTGAGGGGATGTCTCAGTCCAGCTCACAGACGGAGA...GGAGGGTGGGTGCTGTTCCCATGTCAGAGCCTCTTTTTCCCCAGAACCCACCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp TGCTGGAGGAAGGCAGGGGGAGTACAACAGGCAACAGAGCCTTGGAAATGCAGAAATTCAGCCACGTACTaGCCCTGCCAGTCTGTGGTG +
Preference number: 4 (lower is better)
Translates to: CWRKAGGVQQATEPWKCRNSATY*PCQSVV
Trigger: CACCACAGACTGGCAGGGCCAGTACGTGGCTGAATT...TCTGCATTTCCAAGGCTCTGTTGCCTGTTGTACTCCCCCTGCCTTCCTCCAGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp GAAGTGCCAGAGGGCATGGAGGCTGGGCTAGCTCTGTCACGTGTCCTCAGCCTCACTGAAGAGTCCCACTaGAAAGTGCTTGACATGAGT +
Preference number: 4 (lower is better)
Translates to: EVPEGMEAGLALSRVLSLTEESH*KVLDMS
Trigger: ACTCATGTCAAGCACTTTCCAGTGGGACTCTTCAGT...GAGGCTGAGGACACGTGACAGAGCTAGCCCAGCCTCCATGCCCTCTGGCACTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR CAA 72 bp CGGACCATGGATCCAGGTTTTAACCACCCACCAGCCTaGACCAGCAAAGACCACTTGGACTCAGAAGGGAGG +
Preference number: 4 (lower is better)
Translates to: RTMDPGFNHPPA*TSKDHLDSEGR
Trigger: CCTCCCTTCTGAGTCCAAGTGGTCTTTGCTGGTCAAGGCTGGTGGGTGGTTAAAACCTGGATCCATGGTCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR CAA 72 bp GGCAGGCGAGAAACCTGCACCGAGCGGAAGACACTCTaGAGGGTGTTCTTTGAGCTGGCATCCCTCTTATCA +
Preference number: 4 (lower is better)
Translates to: GRRETCTERKTL*RVFFELASLLS
Trigger: TGATAAGAGGGATGCCAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
CDS-3UTR TCA 90 bp TACCGGGATGCCCAGGTGCCAGCCTCATTCCCCCTACTGGGAAGTTGCGCGGCACACAGCAATGACTACTaGGTTAAGATCTTTGTCCAT +
Preference number: 4 (lower is better)
Translates to: YRDAQVPASFPLLGSCAAHSNDY*VKIFVH
Trigger: ATGGACAAAGATCTTAACTCAGTAGTCATTGCTGTG...TGCCGCGCAACTTCCCAGTAGGGGGAATGAGGCTGGCACCTGGGCATCCCGGTA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR TCA 90 bp ATGGTGGGTTCTGGGGAAAAAGAGGCTCTGACATGGGAACAGCACCCACCCTCCCACTGGCTGGAAGGATaGTCTCATTGGAGCGAAGAA +
Preference number: 4 (lower is better)
Translates to: MVGSGEKEALTWEQHPPSHWLEG*SHWSEE
Trigger: TTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGTG...GGAGGGTGGGTGCTGTTCCCATGTCAGAGCCTCTTTTTCCCCAGAACCCACCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR TCA 90 bp CAGGGATTATGGGTACCAGAGTCAGGACCACCCAGCTCTGGGCCTGGAACAGGATGTTCTTCTCTTTGGTaGCCACAGTCATTGCCATGG +
Preference number: 4 (lower is better)
Translates to: QGLWVPESGPPSSGPGTGCSSLW*PQSLPW
Trigger: CCATGGCAATGACTGTGGTCACCAAAGAGAAGAACA...TCCTGTTCCAGGCCCAGAGCTGGGTGGTCCTGACTCTGGTACCCATAATCCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR GCA 90 bp TGCAGATCAGCTTTGCTGGACTTCATAGGAGTTTTGACTTTTTCTGGTACAACCTGCTGCGGCTGCTGCTaGGGGGACTGGGCGACCCCA +
Preference number: 4 (lower is better)
Translates to: CRSALLDFIGVLTFSGTTCCGCC*GDWATP
Trigger: TGGGGTCGCCCAGTCCCCGCAGCAGCAGCCGCAGCA...GGTTGTACCAGAAAAAGTCAAAACTCCTATGAAGTCCAGCAAAGCTGATCTGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
CDS-3UTR GCA 90 bp AGCAAGACTGTGACGGTGCAGAACCTCAGGCAGCGGACCATGGATCCAGGTTTTCCACTGTTGAGCAGGTaGATACCACAGGCTTCCTCT +
Preference number: 4 (lower is better)
Translates to: SKTVTVQNLRQRTMDPGFPLLSR*IPQASS
Trigger: AGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGG...AAAACCTGGATCCATGGTCCGCTGCCTGAGGTTCTGCACCGTCACAGTCTTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp CCACAAGAGAGGAACACAGAAGTGTATACTCCGTTCTACCTGTGCTTCTGGCTTCAAATTCATCTGCACTaGGGCGGGGGTGCGGCCTGG +
Preference number: 4 (lower is better)
Translates to: PQERNTEVYTPFYLCFWLQIHLH*GGGAAW
Trigger: CCAGGCCGCACCCCCGCCCCAGTGCAGATGAATTTG...AAGCCAGAAGCACAGGTAGAACGGAGTATACACTTCTGTGTTCCTCTCTTGTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp AAGTGGGAAGACAAAGCAGGGATGGGGACGCAAGCTGACACAGGAAAAGGGAGATCTCACTCAGGGGCTTaGAGAGCTGTCGCTCCTTCA +
Preference number: 4 (lower is better)
Translates to: KWEDKAGMGTQADTGKGRSHSGA*RAVAPS
Trigger: TGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGA...TCTCCCTTTTCCTGTGTCAGCTTGCGTCCCCATCCCTGCTTTGTCTTCCCACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp CTGATTGTTTCATTCTGGGCAGCCACCTTCAAGCCTGTTTCCACAAGAGAGGAATTGGGCTCCCCACGATaGCGAGGGCACTGCTCATGG +
Preference number: 4 (lower is better)
Translates to: LIVSFWAATFKPVSTREELGSPR*RGHCSW
Trigger: CCATGAGCAGTGCCCTCGCCATCGTGGGGAGCCCAA...TTCCTCTCTTGTGGAAACAGGCTTGAAGGTGGCTGCCCAGAATGAAACAATCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR TCA 90 bp CCGTTCTACCTGTGCTTCTGGCTTATTCCAAGTGGAGTCACTTCTGCTGAGGGCTGGGCTTTGGGGTGCTaGGGATGCTTTCTGTTTCCT +
Preference number: 4 (lower is better)
Translates to: PFYLCFWLIPSGVTSAEGWALGC*GCFLFP
Trigger: AGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCA...GCCCTCAGCAGAAGTGACTCCACTTGGAATAAGCCAGAAGCACAGGTAGAACGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR GCA 90 bp TGCTGGAGGAAGGCAGGGGGAGTACAACAGGCAACAGAGCCTTGGAAATGCAGAGTGTTGCATCACCTCTaGCATGTTGATGAGTCCCAC +
Preference number: 4 (lower is better)
Translates to: CWRKAGGVQQATEPWKCRVLHHL*HVDESH
Trigger: GTGGGACTCATCAACATGGCAGAGGTGATGCAACAC...TCTGCATTTCCAAGGCTCTGTTGCCTGTTGTACTCCCCCTGCCTTCCTCCAGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR GCA 90 bp TGGGAGAGACTGGGAAGGCCCCTTCAATCCCAGAAATACCGGGATGCCCAGGTGAGACATCCTTCACATTaGTGTGCAGGCCAAGTACTA +
Preference number: 4 (lower is better)
Translates to: WERLGRPLQSQKYRDAQVRHPSH*CAGQVL
Trigger: TAGTACTTGGCCTGCACAGCAATGTGAAGGATGTCT...CACCTGGGCATCCCGGTATTTCTGGGATTGAAGGGGCCTTCCCAGTCTCTCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR GCA 90 bp GAAGTGCCAGAGGGCATGGAGGCTGGGCTAGCTCTGTCACGTGTCCTCAGCCTCGTAGATTTTTATTTCTaGCACTGGCACAGAGACATC +
Preference number: 4 (lower is better)
Translates to: EVPEGMEAGLALSRVLSLVDFYF*HWHRDI
Trigger: GATGTCTCTGTGCCAGTGGCAGAAATAAAAATCTAC...GAGGCTGAGGACACGTGACAGAGCTAGCCCAGCCTCCATGCCCTCTGGCACTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR GCA 90 bp ATTACAGGGATTATGGGTACCAGAGTCAGGACCACCCAGCTCTGGGCCTGGAACATTTTCAGGGAGGGCTaGATCCGATACCAGGATCTG +
Preference number: 4 (lower is better)
Translates to: ITGIMGTRVRTTQLWAWNIFREG*IRYQDL
Trigger: CAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAAT...GTTCCAGGCCCAGAGCTGGGTGGTCCTGACTCTGGTACCCATAATCCCTGTAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp GGCCTCTTTCTGCTGCCCTGCCATGACAGAAGTGGGAAGACAAAGCAGGGATGGCTGAGCCCAAGTATTTaGCCACTGGATGAGAACCTA +
Preference number: 4 (lower is better)
Translates to: GLFLLPCHDRSGKTKQGWLSPSI*PLDENL
Trigger: TAGGTTCTCATCCAGTGGCCAAATACTTGGGCTCAG...CCATCCCTGCTTTGTCTTCCCACTTCTGTCATGGCAGGGCAGCAGAAAGAGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR GCA 90 bp CCACAAGAGAGGAACACAGAAGTGTATACTCCGTTCTACCTGTGCTTCTGGCTTGCATACAAATTCATCTaGACTGGGGCGGGGGTGCGG +
Preference number: 4 (lower is better)
Translates to: PQERNTEVYTPFYLCFWLAYKFI*TGAGVR
Trigger: CCGCACCCCCGCCCCAGTGCAGATGAATTTGTATGC...AAGCCAGAAGCACAGGTAGAACGGAGTATACACTTCTGTGTTCCTCTCTTGTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp TTGTCAATATCTGGGGAGCGATCAGACAGCTTAGACTTGATTCCTTCATGGTCACAAATTCATCTGCACTaGGGCGGGGGTGCGGCCTGG +
Preference number: 4 (lower is better)
Translates to: LSISGERSDSLDLIPSWSQIHLH*GGGAAW
Trigger: CCAGGCCGCACCCCCGCCCCAGTGCAGATGAATTTG...TGACCATGAAGGAATCAAGTCTAAGCTGTCTGATCGCTCCCCAGATATTGACAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
CDS-3UTR CCA 90 bp GGCCTCTTTCTGCTGCCCTGCCATGACAGAAGTGGGAAGACAAAGCAGGGATGGTTCCTTCATGGTCAATaGGCTGGCTGGATAAAGAGT +
Preference number: 4 (lower is better)
Translates to: GLFLLPCHDRSGKTKQGWFLHGQ*AGWIKS
Trigger: ACTCTTTATCCAGCCAGCCCATTGACCATGAAGGAA...CCATCCCTGCTTTGTCTTCCCACTTCTGTCATGGCAGGGCAGCAGAAAGAGGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp ATTACAGGGATTATGGGTACCAGAGTCAGGACCACCCAGCTCTGGGCCTGGAACACTCAACTCCATCGATaGACACTCTCAGCATGGTTT +
Preference number: 4 (lower is better)
Translates to: ITGIMGTRVRTTQLWAWNTQLHR*TLSAWF
Trigger: AAACCATGCTGAGAGTGTCCATCGATGGAGTTGAGT...GTTCCAGGCCCAGAGCTGGGTGGTCCTGACTCTGGTACCCATAATCCCTGTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR CAA 72 bp CCAGGATCTGATTCAGTTGGTCGTATACCACCTTCCTaGGAATCTGTGTGCTGTGGCCCAGATCAGGAGATC +
Preference number: 4 (lower is better)
Translates to: PGSDSVGRIPPS*ESVCCGPDQEI
Trigger: GATCTCCTGATCTGGGCCACAGCACACAGATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR CAA 72 bp AGGGAGGGCTGCATCCGATACCAGGATCTGATTCAGTaGGTCGTATACCACCTTCCTTGGAATCTGTGTGCT +
Preference number: 4 (lower is better)
Translates to: REGCIRYQDLIQ*VVYHLPWNLCA
Trigger: AGCACACAGATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
CDS-3UTR TCA 90 bp TGCTGGAGGAAGGCAGGGGGAGTACAACAGGCAACAGAGCCTTGGAAATGCAGAATATCTACTATCTACTaGGCCCAAGTATTTGGCCAC +
Preference number: 4 (lower is better)
Translates to: CWRKAGGVQQATEPWKCRISTIY*AQVFGH
Trigger: GTGGCCAAATACTTGGGCTCAGTAGATAGTAGATAT...TCTGCATTTCCAAGGCTCTGTTGCCTGTTGTACTCCCCCTGCCTTCCTCCAGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR GCA 90 bp CTGTCAGAGCTGTTGGTTCTCTCACTCAGGGGCTTGGAGAGCTGTCGCTCCTTCCTTACTTGTTTTTCCTaGTCTATCCTCTCCATTCAG +
Preference number: 4 (lower is better)
Translates to: LSELLVLSLRGLESCRSFLTCFS*SILSIQ
Trigger: CTGAATGGAGAGGATAGAGCAGGAAAAACAAGTAAG...GAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
CDS-3UTR CCA 90 bp GGCCTCTTTCTGCTGCCCTGCCATGACAGAAGTGGGAAGACAAAGCAGGGATGGGGTCAATGGGCTGGCTaGATAAAGAGTAGATTTTTA +
Preference number: 4 (lower is better)
Translates to: GLFLLPCHDRSGKTKQGWGQWAG*IKSRFL
Trigger: TAAAAATCTACTCTTTATCCAGCCAGCCCATTGACC...CCATCCCTGCTTTGTCTTCCCACTTCTGTCATGGCAGGGCAGCAGAAAGAGGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp CGGTGCAGAACCTCAGGCAGCGGACCATGGATCCAGGTTTTAACCACCCACCAGGTCAAGCTGTCATCTTaGTTTTTAATCCAGGTAGAT +
Preference number: 4 (lower is better)
Translates to: RCRTSGSGPWIQVLTTHQVKLSS*FLIQVD
Trigger: ATCTACCTGGATTAAAAACCAAGATGACAGCTTGAC...CTGGTGGGTGGTTAAAACCTGGATCCATGGTCCGCTGCCTGAGGTTCTGCACCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp CCTGCTGGAGGAAGGCAGGGGGAGTACAACAGGCAACAGAGCCTTGGAAATGCATCTCCAAACATGTCCTaGTCAGTGATTTCTAAAGTG +
Preference number: 4 (lower is better)
Translates to: PAGGRQGEYNRQQSLGNASPNMS*SVISKV
Trigger: CACTTTAGAAATCACTGACCAGGACATGTTTGGAGA...TGCATTTCCAAGGCTCTGTTGCCTGTTGTACTCCCCCTGCCTTCCTCCAGCAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR TCA 90 bp CCACAAGAGAGGAACACAGAAGTGTATACTCCGTTCTACCTGTGCTTCTGGCTTTCTCGCTTAAGGAAATaGGGGTACTGGAGGGAGAAG +
Preference number: 4 (lower is better)
Translates to: PQERNTEVYTPFYLCFWLSRLRK*GYWREK
Trigger: CTTCTCCCTCCAGTACCCTCATTTCCTTAAGCGAGA...AAGCCAGAAGCACAGGTAGAACGGAGTATACACTTCTGTGTTCCTCTCTTGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR GCA 90 bp GGGGTGAGTGAGGTGAAGGAAGGCCCAGAGTATTCAATTACAGGGATTATGGGTTCATCAGGGAACTTATaGCTGCAGGTCAACATGGCT +
Preference number: 4 (lower is better)
Translates to: GVSEVKEGPEYSITGIMGSSGNL*LQVNMA
Trigger: AGCCATGTTGACCTGCAGGCATAAGTTCCCTGATGA...ACCCATAATCCCTGTAATTGAATACTCTGGGCCTTCCTTCACCTCACTCACCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR GCA 90 bp GGGGTGAGTGAGGTGAAGGAAGGCCCAGAGTATTCAATTACAGGGATTATGGGTAGCATGGTTTGCTGCTaGTTTGCAGAACAGATGAGG +
Preference number: 4 (lower is better)
Translates to: GVSEVKEGPEYSITGIMGSMVCC*FAEQMR
Trigger: CCTCATCTGTTCTGCAAAGCAGCAGCAAACCATGCT...ACCCATAATCCCTGTAATTGAATACTCTGGGCCTTCCTTCACCTCACTCACCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR CAA 72 bp ACGTGTTCTAGCCCAAAGCCCACCTCGTCAGAAACTTaGAATCGTTTCAGGAGGGCCACAAACTTCTGTTTG +
Preference number: 4 (lower is better)
Translates to: TCSSPKPTSSET*NRFRRATNFCL
Trigger: CAAACAGAAGTTTGTGGCCCTCCTGAAACGATTCAAAGTTTCTGACGAGGTGGGCTTTGGGCTAGAACACGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
CDS-3UTR GCA 90 bp CTGATTGTTTCATTCTGGGCAGCCACCTTCAAGCCTGTTTCCACAAGAGAGGAAACTCTCAGCATGGTTTaGTGCTGCTTTGCAGAACAG +
Preference number: 4 (lower is better)
Translates to: LIVSFWAATFKPVSTREETLSMV*CCFAEQ
Trigger: CTGTTCTGCAAAGCAGCAGCAAACCATGCTGAGAGT...TTCCTCTCTTGTGGAAACAGGCTTGAAGGTGGCTGCCCAGAATGAAACAATCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp AGGGAGACATATGACTGGGTAAGAGTCACAGATAATGTATGTGGAGGGGTGGGTGACTTGATTCCTTCATaGTCAATGGGCTGGCTGGAT +
Preference number: 4 (lower is better)
Translates to: RETYDWVRVTDNVCGGVGDLIPS*SMGWLD
Trigger: ATCCAGCCAGCCCATTGACCATGAAGGAATCAAGTC...ACCCACCCCTCCACATACATTATCTGTGACTCTTACCCAGTCATATGTCTCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR GCA 90 bp GGGGTGAGTGAGGTGAAGGAAGGCCCAGAGTATTCAATTACAGGGATTATGGGTCTTTGCAACATAATCTaGAGTTTGTTGGCATCTCGC +
Preference number: 4 (lower is better)
Translates to: GVSEVKEGPEYSITGIMGLCNII*SLLASR
Trigger: GCGAGATGCCAACAAACTGCAGATTATGTTGCAAAG...ACCCATAATCCCTGTAATTGAATACTCTGGGCCTTCCTTCACCTCACTCACCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR GCA 90 bp TGCTGGAGGAAGGCAGGGGGAGTACAACAGGCAACAGAGCCTTGGAAATGCAGACAGAATCAAGAAAGGTaGTGCTATATCTACTATCTA +
Preference number: 4 (lower is better)
Translates to: CWRKAGGVQQATEPWKCRQNQER*CYIYYL
Trigger: TAGATAGTAGATATAGCAGCACCTTTCTTGATTCTG...TCTGCATTTCCAAGGCTCTGTTGCCTGTTGTACTCCCCCTGCCTTCCTCCAGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CCA 90 bp GGGGTGAGTGAGGTGAAGGAAGGCCCAGAGTATTCAATTACAGGGATTATGGGTTTTTATTTCTGCCACTaGCACAGAGACATCCTTCAC +
Preference number: 4 (lower is better)
Translates to: GVSEVKEGPEYSITGIMGFYFCH*HRDILH
Trigger: GTGAAGGATGTCTCTGTGCCAGTGGCAGAAATAAAA...ACCCATAATCCCTGTAATTGAATACTCTGGGCCTTCCTTCACCTCACTCACCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR CAA 72 bp GCCCAAGATAGTTCGGTTCTTGTACCGCTTCCTCCTTaGCAACATAATCTGCAGTTTGTTGGCATCTCGCTT +
Preference number: 4 (lower is better)
Translates to: AQDSSVLVPLPP*QHNLQFVGISL
Trigger: AAGCGAGATGCCAACAAACTGCAGATTATGTTGCAAAGGAGGAAGCGGTACAAGAACCGAACTATCTTGGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
CDS-3UTR GCA 90 bp CCACAAGAGAGGAACACAGAAGTGTATACTCCGTTCTACCTGTGCTTCTGGCTTGTACAACCAGACTTGTaGTCACATCTCCAAACATGT +
Preference number: 4 (lower is better)
Translates to: PQERNTEVYTPFYLCFWLVQPDL*SHLQTC
Trigger: ACATGTTTGGAGATGTGAGCACAAGTCTGGTTGTAC...AAGCCAGAAGCACAGGTAGAACGGAGTATACACTTCTGTGTTCCTCTCTTGTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
3UTR CAA 72 bp TTGTCAATATCTGGGGAGCGATCAGACAGCTTAGACTaGATTCCTTCATGGTCAATGGGCTGGCTGGATAAA +
Preference number: 4 (lower is better)
Translates to: LSISGERSDSLD*IPSWSMGWLDK
Trigger: TTTATCCAGCCAGCCCATTGACCATGAAGGAATCAAGTCTAAGCTGTCTGATCGCTCCCCAGATATTGACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR CAA 72 bp ACTTTGAATCGTTTCAGGAGGGCCACAAACTTCTGTTaGATGTTAGGTTGCCTAGTGATGGCTGAGGTTGAG +
Preference number: 4 (lower is better)
Translates to: TLNRFRRATNFC*MLGCLVMAEVE
Trigger: CTCAACCTCAGCCATCACTAGGCAACCTAACATCAAACAGAAGTTTGTGGCCCTCCTGAAACGATTCAAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR CAA 72 bp CCCTGCAGATCAGCTTTGCTGGACTTCATAGGAGTTTaGACTTTTTCTGGTACAACCAGACTTGTGCTCACA +
Preference number: 4 (lower is better)
Translates to: PCRSALLDFIGV*TFSGTTRLVLT
Trigger: TGTGAGCACAAGTCTGGTTGTACCAGAAAAAGTCAAAACTCCTATGAAGTCCAGCAAAGCTGATCTGCAGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
3UTR CAA 72 bp CTAAAACACACACAAAACACAGGACATCCAAGTGATTaGAGATGCCAGGAAATCATGCATGGGAGAGACTGG +
Preference number: 4 (lower is better)
Translates to: LKHTQNTGHPSD*RCQEIMHGRDW
Trigger: CCAGTCTCTCCCATGCATGATTTCCTGGCATCTCAAATCACTTGGATGTCCTGTGTTTTGTGTGTGTTTTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS CCA 90 bp CTGGACCGCCCGGAGGCGCAGAGCCCGAGGCCACCGCGACGGCCATaGAGGTGGAGGTGGAGGAGGACGAGGAGGAGGCGGCCGCAGCCG +
Preference number: 5 (lower is better)
Translates to: LDRPEAQSPRPPRRP*RWRWRRTRRRRPQP
Trigger: CGGCTGCGGCCGCCTCCTCCTCGTCCTCCTCCACCTCCACCTCCATGGCCGTCGCGGTGGCCTCGGGCTCTGCGCCTCCGGGCGGTCCAG
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025786.9
ENSMUST00000236775.2
CDS CCA 90 bp AGCATACAAATTCATCTGCACTGGGGCGGGGGTGCGGCCTGGTCCTaGACCGCCCGGAGGCGCAGAGCCCGAGGCCACCGCGACGGCCAT +
Preference number: 5 (lower is better)
Translates to: SIQIHLHWGGGAAWS*TARRRRARGHRDGH
Trigger: ATGGCCGTCGCGGTGGCCTCGGGCTCTGCGCCTCCGGGCGGTCCAGGACCAGGCCGCACCCCCGCCCCAGTGCAGATGAATTTGTATGCT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025786.9
ENSMUST00000236775.2
ENSMUST00000237463.2
CDS CCA 90 bp CCAGGTAGCATACAAATTCATCTGCACTGGGGCGGGGGTGCGGCCTaGTCCTGGACCGCCCGGAGGCGCAGAGCCCGAGGCCACCGCGAC +
Preference number: 5 (lower is better)
Translates to: PGSIQIHLHWGGGAA*SWTARRRRARGHRD
Trigger: GTCGCGGTGGCCTCGGGCTCTGCGCCTCCGGGCGGTCCAGGACCAGGCCGCACCCCCGCCCCAGTGCAGATGAATTTGTATGCTACCTGG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025786.9
ENSMUST00000236775.2
ENSMUST00000237463.2
CDS-3UTR CAA 90 bp GAAGTGCCAGAGGGCATGGAGGCTGGGCTAGCTCTGTCACGTGTCCTCAGCCTCCCCACAGCTGCCACCTaGACCGGCCTCGGCATGGAT +
Preference number: 5 (lower is better)
Translates to: EVPEGMEAGLALSRVLSLPTAAT*TGLGMD
Trigger: ATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGG...GAGGCTGAGGACACGTGACAGAGCTAGCCCAGCCTCCATGCCCTCTGGCACTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CAA 90 bp CTCTGGGCCTGGAACAGGAGGAAGGGTAGTCCAGAGATGGGCTGGGCAGTGAGACCCTCAAAGAAGGGCTaGAGCTTGGGCTTTGGGGTG +
Preference number: 5 (lower is better)
Translates to: LWAWNRRKGSPEMGWAVRPSKKG*SLGFGV
Trigger: CACCCCAAAGCCCAAGCTCAAGCCCTTCTTTGAGGG...TCTCACTGCCCAGCCCATCTCTGGACTACCCTTCCTCCTGTTCCAGGCCCAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CAA 90 bp AGTGGGAAGACAAAGCAGGGATGGGGACGCAAGCTGACACAGGAAAAGGGAGACGGCTCAGGCCTGAGCTaGAGGGTGGTGATGTGGAGG +
Preference number: 5 (lower is better)
Translates to: SGKTKQGWGRKLTQEKGDGSGLS*RVVMWR
Trigger: CCTCCACATCACCACCCTCAAGCTCAGGCCTGAGCC...GTCTCCCTTTTCCTGTGTCAGCTTGCGTCCCCATCCCTGCTTTGTCTTCCCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CAA 90 bp ATGGTGGGTTCTGGGGAAAAAGAGGCTCTGACATGGGAACAGCACCCACCCTCCCCTGGACCTCCACTGTaGAGCAGGTGCATACCACAG +
Preference number: 5 (lower is better)
Translates to: MVGSGEKEALTWEQHPPSPGPPL*SRCIPQ
Trigger: CTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGG...GGAGGGTGGGTGCTGTTCCCATGTCAGAGCCTCTTTTTCCCCAGAACCCACCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CAA 90 bp CTCTGGGCCTGGAACAGGAGGAAGGGTAGTCCAGAGATGGGCTGGGCAGTGAGAGAGCGGAAGACACTCTaGAGGGTGTTCTTTGAGCTG +
Preference number: 5 (lower is better)
Translates to: LWAWNRRKGSPEMGWAVRERKTL*RVFFEL
Trigger: CAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCTC...TCTCACTGCCCAGCCCATCTCTGGACTACCCTTCCTCCTGTTCCAGGCCCAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CAA 90 bp TGGGAGAGACTGGGAAGGCCCCTTCAATCCCAGAAATACCGGGATGCCCAGGTGGCCCTCATTAGGGTGTaGCATCACCTCTGCCATGTT +
Preference number: 5 (lower is better)
Translates to: WERLGRPLQSQKYRDAQVALIRV*HHLCHV
Trigger: AACATGGCAGAGGTGATGCAACACCCTAATGAGGGC...CACCTGGGCATCCCGGTATTTCTGGGATTGAAGGGGCCTTCCCAGTCTCTCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CAA 90 bp CCGTTCTACCTGTGCTTCTGGCTTATTCCAAGTGGAGTCACTTCTGCTGAGGGCCTCTCACTCAGGGGCTaGGAGAGCTGTCGCTCCTTC +
Preference number: 5 (lower is better)
Translates to: PFYLCFWLIPSGVTSAEGLSLRG*ESCRSF
Trigger: GAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAG...GCCCTCAGCAGAAGTGACTCCACTTGGAATAAGCCAGAAGCACAGGTAGAACGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CAA 90 bp AGTGGGAAGACAAAGCAGGGATGGGGACGCAAGCTGACACAGGAAAAGGGAGACAGCCAGTCTGGGGTCTaGCTGGCAAGGGACTTGACA +
Preference number: 5 (lower is better)
Translates to: SGKTKQGWGRKLTQEKGDSQSGV*LARDLT
Trigger: TGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCT...GTCTCCCTTTTCCTGTGTCAGCTTGCGTCCCCATCCCTGCTTTGTCTTCCCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CAA 90 bp AGTGGGAAGACAAAGCAGGGATGGGGACGCAAGCTGACACAGGAAAAGGGAGACCCACTGTCGCTGGGGTaGTACATCTCTAGACTGTCG +
Preference number: 5 (lower is better)
Translates to: SGKTKQGWGRKLTQEKGDPLSLG*YISRLS
Trigger: CGACAGTCTAGAGATGTACAACCCCAGCGACAGTGG...GTCTCCCTTTTCCTGTGTCAGCTTGCGTCCCCATCCCTGCTTTGTCTTCCCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CAA 90 bp AAGTGGGAAGACAAAGCAGGGATGGGGACGCAAGCTGACACAGGAAAAGGGAGATTCCCGAGGCTGCCCTaGCTGTTGAGACTGCCAATC +
Preference number: 5 (lower is better)
Translates to: KWEDKAGMGTQADTGKGRFPRLP*LLRLPI
Trigger: GATTGGCAGTCTCAACAGCAAGGGCAGCCTCGGGAA...TCTCCCTTTTCCTGTGTCAGCTTGCGTCCCCATCCCTGCTTTGTCTTCCCACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CAA 90 bp ATGGTGGGTTCTGGGGAAAAAGAGGCTCTGACATGGGAACAGCACCCACCCTCCTTTTCTCGGGGCTTCTaGCTCAGGAAGATAGTGGGC +
Preference number: 5 (lower is better)
Translates to: MVGSGEKEALTWEQHPPSFSRGF*LRKIVG
Trigger: GCCCACTATCTTCCTGAGCAAGAAGCCCCGAGAAAA...GGAGGGTGGGTGCTGTTCCCATGTCAGAGCCTCTTTTTCCCCAGAACCCACCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CAA 90 bp CGGTGCAGAACCTCAGGCAGCGGACCATGGATCCAGGTTTTAACCACCCACCAGCACTCTCAGCATGGTTaGCTGCTGCTTTGCAGAACA +
Preference number: 5 (lower is better)
Translates to: RCRTSGSGPWIQVLTTHQHSQHG*LLLCRT
Trigger: TGTTCTGCAAAGCAGCAGCAAACCATGCTGAGAGTG...CTGGTGGGTGGTTAAAACCTGGATCCATGGTCCGCTGCCTGAGGTTCTGCACCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CAA 90 bp CAGGGATTATGGGTACCAGAGTCAGGACCACCCAGCTCTGGGCCTGGAACAGGAAGCGAAGAATCCTTTTaGAACCCTGCAGCTTCACAG +
Preference number: 5 (lower is better)
Translates to: QGLWVPESGPPSSGPGTGSEESF*NPAASQ
Trigger: CTGTGAAGCTGCAGGGTTCAAAAAGGATTCTTCGCT...TCCTGTTCCAGGCCCAGAGCTGGGTGGTCCTGACTCTGGTACCCATAATCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CAA 90 bp GGCCTCTTTCTGCTGCCCTGCCATGACAGAAGTGGGAAGACAAAGCAGGGATGGACCTCGTCAGAAACTTaGAATCGTTTCAGGAGGGCC +
Preference number: 5 (lower is better)
Translates to: GLFLLPCHDRSGKTKQGWTSSET*NRFRRA
Trigger: GGCCCTCCTGAAACGATTCAAAGTTTCTGACGAGGT...CCATCCCTGCTTTGTCTTCCCACTTCTGTCATGGCAGGGCAGCAGAAAGAGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CAA 90 bp AGCAAGACTGTGACGGTGCAGAACCTCAGGCAGCGGACCATGGATCCAGGTTTTCGTATACCACCTTCCTaGGAATCTGTGTGCTGTGGC +
Preference number: 5 (lower is better)
Translates to: SKTVTVQNLRQRTMDPGFRIPPS*ESVCCG
Trigger: GCCACAGCACACAGATTCCAAGGAAGGTGGTATACG...AAAACCTGGATCCATGGTCCGCTGCCTGAGGTTCTGCACCGTCACAGTCTTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CAA 90 bp GGAGAGACTGGGAAGGCCCCTTCAATCCCAGAAATACCGGGATGCCCAGGTGCCAACATAATCTGCAGTTaGTTGGCATCTCGCTTAAGG +
Preference number: 5 (lower is better)
Translates to: GETGKAPSIPEIPGCPGANIICS*LASRLR
Trigger: CCTTAAGCGAGATGCCAACAAACTGCAGATTATGTT...GGCACCTGGGCATCCCGGTATTTCTGGGATTGAAGGGGCCTTCCCAGTCTCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CAA 90 bp AGGGAGACATATGACTGGGTAAGAGTCACAGATAATGTATGTGGAGGGGTGGGTCCCCATATGGGCTATTaGGGCTCCCCACGATGGCGA +
Preference number: 5 (lower is better)
Translates to: RETYDWVRVTDNVCGGVGPHMGY*GSPRWR
Trigger: TCGCCATCGTGGGGAGCCCAAATAGCCCATATGGGG...ACCCACCCCTCCACATACATTATCTGTGACTCTTACCCAGTCATATGTCTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CAA 90 bp AAGTGGGAAGACAAAGCAGGGATGGGGACGCAAGCTGACACAGGAAAAGGGAGACCCTGCAGATCAGCTTaGCTGGACTTCATAGGAGTT +
Preference number: 5 (lower is better)
Translates to: KWEDKAGMGTQADTGKGRPCRSA*LDFIGV
Trigger: AACTCCTATGAAGTCCAGCAAAGCTGATCTGCAGGG...TCTCCCTTTTCCTGTGTCAGCTTGCGTCCCCATCCCTGCTTTGTCTTCCCACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CAA 90 bp TGCTGGAGGAAGGCAGGGGGAGTACAACAGGCAACAGAGCCTTGGAAATGCAGACAGGATCTGATTCAGTaGGTCGTATACCACCTTCCT +
Preference number: 5 (lower is better)
Translates to: CWRKAGGVQQATEPWKCRQDLIQ*VVYHLP
Trigger: AGGAAGGTGGTATACGACCAACTGAATCAGATCCTG...TCTGCATTTCCAAGGCTCTGTTGCCTGTTGTACTCCCCCTGCCTTCCTCCAGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CAA 90 bp AGTGGGAAGACAAAGCAGGGATGGGGACGCAAGCTGACACAGGAAAAGGGAGACGTACCGCTTCCTCCTTaGCAACATAATCTGCAGTTT +
Preference number: 5 (lower is better)
Translates to: SGKTKQGWGRKLTQEKGDVPLPP*QHNLQF
Trigger: AAACTGCAGATTATGTTGCAAAGGAGGAAGCGGTAC...GTCTCCCTTTTCCTGTGTCAGCTTGCGTCCCCATCCCTGCTTTGTCTTCCCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CAA 90 bp ATGGTGGGTTCTGGGGAAAAAGAGGCTCTGACATGGGAACAGCACCCACCCTCCTCAGACAGCTTAGACTaGATTCCTTCATGGTCAATG +
Preference number: 5 (lower is better)
Translates to: MVGSGEKEALTWEQHPPSSDSLD*IPSWSM
Trigger: CATTGACCATGAAGGAATCAAGTCTAAGCTGTCTGA...GGAGGGTGGGTGCTGTTCCCATGTCAGAGCCTCTTTTTCCCCAGAACCCACCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CAA 90 bp AAGTGGGAAGACAAAGCAGGGATGGGGACGCAAGCTGACACAGGAAAAGGGAGACTGGTACAACCAGACTaGTGCTCACATCTCCAAACA +
Preference number: 5 (lower is better)
Translates to: KWEDKAGMGTQADTGKGRLVQPD*CSHLQT
Trigger: TGTTTGGAGATGTGAGCACAAGTCTGGTTGTACCAG...TCTCCCTTTTCCTGTGTCAGCTTGCGTCCCCATCCCTGCTTTGTCTTCCCACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CAA 90 bp CAGGGATTATGGGTACCAGAGTCAGGACCACCCAGCTCTGGGCCTGGAACAGGAGACTTCATAGGAGTTTaGACTTTTTCTGGTACAACC +
Preference number: 5 (lower is better)
Translates to: QGLWVPESGPPSSGPGTGDFIGV*TFSGTT
Trigger: GGTTGTACCAGAAAAAGTCAAAACTCCTATGAAGTC...TCCTGTTCCAGGCCCAGAGCTGGGTGGTCCTGACTCTGGTACCCATAATCCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CAA 90 bp AGTGGGAAGACAAAGCAGGGATGGGGACGCAAGCTGACACAGGAAAAGGGAGACATAGTGGGCACTTTCTaGTTCTTCTCTTTGGTGACC +
Preference number: 5 (lower is better)
Translates to: SGKTKQGWGRKLTQEKGDIVGTF*FFSLVT
Trigger: GGTCACCAAAGAGAAGAACAAGAAAGTGCCCACTAT...GTCTCCCTTTTCCTGTGTCAGCTTGCGTCCCCATCCCTGCTTTGTCTTCCCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CAA 90 bp AGCAAGACTGTGACGGTGCAGAACCTCAGGCAGCGGACCATGGATCCAGGTTTTGGAAGGATGATCTCATaGGAGCGAAGAATCCTTTTT +
Preference number: 5 (lower is better)
Translates to: SKTVTVQNLRQRTMDPGFGRMIS*ERRILF
Trigger: AAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCC...AAAACCTGGATCCATGGTCCGCTGCCTGAGGTTCTGCACCGTCACAGTCTTGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CAA 90 bp ATGGTGGGTTCTGGGGAAAAAGAGGCTCTGACATGGGAACAGCACCCACCCTCCAGTCAAGCTGTCATCTaGGTTTTTAATCCAGGTAGA +
Preference number: 5 (lower is better)
Translates to: MVGSGEKEALTWEQHPPSSQAVI*VFNPGR
Trigger: TCTACCTGGATTAAAAACCAAGATGACAGCTTGACT...GGAGGGTGGGTGCTGTTCCCATGTCAGAGCCTCTTTTTCCCCAGAACCCACCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CAA 90 bp AGCAAGACTGTGACGGTGCAGAACCTCAGGCAGCGGACCATGGATCCAGGTTTTATAATCTGCAGTTTGTaGGCATCTCGCTTAAGGAAA +
Preference number: 5 (lower is better)
Translates to: SKTVTVQNLRQRTMDPGFIICSL*ASRLRK
Trigger: TTTCCTTAAGCGAGATGCCAACAAACTGCAGATTAT...AAAACCTGGATCCATGGTCCGCTGCCTGAGGTTCTGCACCGTCACAGTCTTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CAA 90 bp CCACAAGAGAGGAACACAGAAGTGTATACTCCGTTCTACCTGTGCTTCTGGCTTGCCACAAACTTCTGTTaGATGTTAGGTTGCCTAGTG +
Preference number: 5 (lower is better)
Translates to: PQERNTEVYTPFYLCFWLATNFC*MLGCLV
Trigger: CACTAGGCAACCTAACATCAAACAGAAGTTTGTGGC...AAGCCAGAAGCACAGGTAGAACGGAGTATACACTTCTGTGTTCCTCTCTTGTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS-3UTR CAA 90 bp GGGGTGAGTGAGGTGAAGGAAGGCCCAGAGTATTCAATTACAGGGATTATGGGTTTAATCCAGGTAGATTaGACTTTTTCTAAAGCAGCC +
Preference number: 5 (lower is better)
Translates to: GVSEVKEGPEYSITGIMGLIQVD*TFSKAA
Trigger: GGCTGCTTTAGAAAAAGTCAAATCTACCTGGATTAA...ACCCATAATCCCTGTAATTGAATACTCTGGGCCTTCCTTCACCTCACTCACCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS CCA 72 bp CCGGAGGCGCAGAGCCCGAGGCCACCGCGACGGCCATaGAGGTGGAGGTGGAGGAGGACGAGGAGGAGGCGG +
Preference number: 6 (lower is better)
Translates to: PEAQSPRPPRRP*RWRWRRTRRRR
Trigger: CCGCCTCCTCCTCGTCCTCCTCCACCTCCACCTCCATGGCCGTCGCGGTGGCCTCGGGCTCTGCGCCTCCGG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025786.9
ENSMUST00000236775.2
CDS CCA 72 bp AGGTGGACGAGGAGGACGAGGTGGCCTGGGCCAGCTTaGGGGGCGTCGGCTGTTGAGGCTGCGGCGGCTGCT +
Preference number: 6 (lower is better)
Translates to: RWTRRTRWPGPA*GASAVEAAAAA
Trigger: AGCAGCCGCCGCAGCCTCAACAGCCGACGCCCCCCAAGCTGGCCCAGGCCACCTCGTCCTCCTCGTCCACCT
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025786.9
ENSMUST00000236775.2
CDS CCA 72 bp ATACAAATTCATCTGCACTGGGGCGGGGGTGCGGCCTaGTCCTGGACCGCCCGGAGGCGCAGAGCCCGAGGC +
Preference number: 6 (lower is better)
Translates to: IQIHLHWGGGAA*SWTARRRRARG
Trigger: GCCTCGGGCTCTGCGCCTCCGGGCGGTCCAGGACCAGGCCGCACCCCCGCCCCAGTGCAGATGAATTTGTAT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025786.9
ENSMUST00000236775.2
ENSMUST00000237463.2
CDS CAA 72 bp GTCTCCACCAGGCCACTGGCTGGAAGGATGATCTCATaGGAGCGAAGAATCCTTTTTGAACCCTGCAGCTTC +
Preference number: 6 (lower is better)
Translates to: VSTRPLAGRMIS*ERRILFEPCSF
Trigger: GAAGCTGCAGGGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGTGGCCTGGTGGAGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025786.9
ENSMUST00000237463.2
CDS TCA 72 bp CTATCCTCTCCATTCAGCCAGACATGCCACAGCCAATaGATCCAGAGAACCTGCAGCTTCACAGCAATGACT +
Preference number: 6 (lower is better)
Translates to: LSSPFSQTCHSQ*IQRTCSFTAMT
Trigger: AGTCATTGCTGTGAAGCTGCAGGTTCTCTGGATTCATTGGCTGTGGCATGTCTGGCTGAATGGAGAGGATAG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236775.2
CDS CAA 90 bp TCGATGACCTGGCTCTTAGAATCCACCTCCTTTTCTCGGGGCTTCTaGCTCAGGAAGATAGTGGGCACTTTCTTGTTCTTCTCTTTGGTG +
Preference number: 6 (lower is better)
Translates to: SMTWLLESTSFSRGF*LRKIVGTFLFFSLV
Trigger: CACCAAAGAGAAGAACAAGAAAGTGCCCACTATCTTCCTGAGCAAGAAGCCCCGAGAAAAGGAGGTGGATTCTAAGAGCCAGGTCATCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9
CDS CAA 72 bp TGGCTCTTAGAATCCACCTCCTTTTCTCGGGGCTTCTaGCTCAGGAAGATAGTGGGCACTTTCTTGTTCTTC +
Preference number: 6 (lower is better)
Translates to: WLLESTSFSRGF*LRKIVGTFLFF
Trigger: GAAGAACAAGAAAGTGCCCACTATCTTCCTGAGCAAGAAGCCCCGAGAAAAGGAGGTGGATTCTAAGAGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025786.9