RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PACRG (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037196

Ensembl transcript IDs: ENSMUST00000041463.7

Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp CTAACAGTCTTTTGGCCCAGAAACTACTATGTTTGCAGCTGTAGAAGTCACAAGAGGGACAGACGGCTGTaGCACCAAGGGAGGCTCCCT +
Preference number: 2 (lower is better)
Translates to: LTVFWPRNYYVCSCRSHKRDRRL*HQGRLP
Trigger: AGGGAGCCTCCCTTGGTGTCACAGCCGTCTGTCCCT...CTTGTGACTTCTACAGCTGCAAACATAGTAGTTTCTGGGCCAAAAGACTGTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
3UTR-3UTR CCA 90 bp AGGTTTAACTCAGACTCCTGCCTCCATCTGAGCCAGATAGAGACGCAATTCTCCGGGCTAACAGTCTTTTaGCCCAGAAACTACTATGTT +
Preference number: 2 (lower is better)
Translates to: RFNSDSCLHLSQIETQFSGLTVF*PRNYYV
Trigger: AACATAGTAGTTTCTGGGCCAAAAGACTGTTAGCCC...GGAGAATTGCGTCTCTATCTGGCTCAGATGGAGGCAGGAGTCTGAGTTAAACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
3UTR-3UTR CCA 90 bp CTCAGACTCCTGCCTCCATCTGAGCCAGATAGAGACGCAATTCTCCTTGTGGGGGGCACTATTTATATATaGGAAAGCCTTGCTTACAAT +
Preference number: 2 (lower is better)
Translates to: LRLLPPSEPDRDAILLVGGTIYI*ESLAYN
Trigger: ATTGTAAGCAAGGCTTTCCCATATATAAATAGTGCC...CCCCACAAGGAGAATTGCGTCTCTATCTGGCTCAGATGGAGGCAGGAGTCTGAG
47% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
3UTR-3UTR CAA 90 bp TTTAACTCAGACTCCTGCCTCCATCTGAGCCAGATAGAGACGCAATTCTCCTTGATATATGGGAAAGCCTaGCTTACAATAGGGCTAACA +
Preference number: 3 (lower is better)
Translates to: FNSDSCLHLSQIETQFSLIYGKA*LTIGLT
Trigger: TGTTAGCCCTATTGTAAGCAAGGCTTTCCCATATAT...CAAGGAGAATTGCGTCTCTATCTGGCTCAGATGGAGGCAGGAGTCTGAGTTAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
3UTR CCA 72 bp GGGAAAGCCTTGCTTACAATAGGGCTAACAGTCTTTTaGCCCAGAAACTACTATGTTTGCAGCTGTAGAAGT +
Preference number: 3 (lower is better)
Translates to: GKALLTIGLTVF*PRNYYVCSCRS
Trigger: ACTTCTACAGCTGCAAACATAGTAGTTTCTGGGCCAAAAGACTGTTAGCCCTATTGTAAGCAAGGCTTTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
CDS-3UTR CCA 90 bp TCCTGCCTCCATCTGAGCCAGATAGAGACGCAATTCTCCTTGTGGGGAGAAGAAACCAGGGAACGAGGCTaGTGCACCTGGAACGTCTGT +
Preference number: 4 (lower is better)
Translates to: SCLHLSQIETQFSLWGEETRERG*CTWNVC
Trigger: ACAGACGTTCCAGGTGCACCAGCCTCGTTCCCTGGT...TTCTTCTCCCCACAAGGAGAATTGCGTCTCTATCTGGCTCAGATGGAGGCAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
CDS-3UTR CCA 90 bp CTCAGACTCCTGCCTCCATCTGAGCCAGATAGAGACGCAATTCTCCTTGTGGGGCTGGAACGTCTGTTGTaGCAGCAGTTTAGTCCTCTT +
Preference number: 4 (lower is better)
Translates to: LRLLPPSEPDRDAILLVGLERLL*QQFSPL
Trigger: AAGAGGACTAAACTGCTGCCACAACAGACGTTCCAG...CCCCACAAGGAGAATTGCGTCTCTATCTGGCTCAGATGGAGGCAGGAGTCTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
CDS-3UTR GCA 90 bp CTGAGCCAGATAGAGACGCAATTCTCCTTGTGGGGAGAAGAAGAAAAGCACAGTGCTGGCTGTAGTCGATaGCATCCCCGGAGTTCACAT +
Preference number: 4 (lower is better)
Translates to: LSQIETQFSLWGEEEKHSAGCSR*HPRSSH
Trigger: ATGTGAACTCCGGGGATGGCATCGACTACAGCCAGC...ACTGTGCTTTTCTTCTTCTCCCCACAAGGAGAATTGCGTCTCTATCTGGCTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
CDS-3UTR TCA 90 bp CATCTGAGCCAGATAGAGACGCAATTCTCCTTGTGGGGAGAAGAAGAAAAGCACAGGACCCCGCACGACTaGGTTTTTCATCATGGCTTT +
Preference number: 4 (lower is better)
Translates to: HLSQIETQFSLWGEEEKHRTPHD*VFHHGF
Trigger: AAAGCCATGATGAAAAACTCAGTCGTGCGGGGTCCT...GTGCTTTTCTTCTTCTCCCCACAAGGAGAATTGCGTCTCTATCTGGCTCAGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
CDS-3UTR GCA 90 bp TCTGAGCCAGATAGAGACGCAATTCTCCTTGTGGGGAGAAGAAGAAAAGCACAGGAAGACACAACCAGATaGTGGAGAACCTTGAGCGTC +
Preference number: 4 (lower is better)
Translates to: SEPDRDAILLVGRRRKAQEDTTR*WRTLSV
Trigger: GACGCTCAAGGTTCTCCAGCATCTGGTTGTGTCTTC...CTGTGCTTTTCTTCTTCTCCCCACAAGGAGAATTGCGTCTCTATCTGGCTCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
CDS-3UTR CCA 90 bp TCTTTTGGCCCAGAAACTACTATGTTTGCAGCTGTAGAAGTCACAAGTAATGAGCGAGGCTGGTGCACCTaGAACGTCTGTTGTGGCAGC +
Preference number: 4 (lower is better)
Translates to: SFGPETTMFAAVEVTSNERGWCT*NVCCGS
Trigger: GCTGCCACAACAGACGTTCCAGGTGCACCAGCCTCG...CTCATTACTTGTGACTTCTACAGCTGCAAACATAGTAGTTTCTGGGCCAAAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
CDS-3UTR CCA 90 bp CTGAGCCAGATAGAGACGCAATTCTCCTTGTGGGGAGAAGAAGAAAAGCACAGTGACACAACCAGATGCTaGAGAACCTTGAGCGTCACA +
Preference number: 4 (lower is better)
Translates to: LSQIETQFSLWGEEEKHSDTTRC*RTLSVT
Trigger: TGTGACGCTCAAGGTTCTCCAGCATCTGGTTGTGTC...ACTGTGCTTTTCTTCTTCTCCCCACAAGGAGAATTGCGTCTCTATCTGGCTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
CDS-3UTR GCA 90 bp TTTAACTCAGACTCCTGCCTCCATCTGAGCCAGATAGAGACGCAATTCTCCTTGTTTCCTTTCGAGTCATaGTCAAGGGCGATTGGGAAG +
Preference number: 4 (lower is better)
Translates to: FNSDSCLHLSQIETQFSLFPFES*SRAIGK
Trigger: CTTCCCAATCGCCCTTGAGCATGACTCGAAAGGAAA...CAAGGAGAATTGCGTCTCTATCTGGCTCAGATGGAGGCAGGAGTCTGAGTTAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
CDS-3UTR GCA 90 bp CTTGCTTACAATAGGGCTAACAGTCTTTTGGCCCAGAAACTACTATGTTTGCAGTTCTTTAAATGCCCCTaGAACTGGAGGACCCCGCAC +
Preference number: 4 (lower is better)
Translates to: LAYNRANSLLAQKLLCLQFFKCP*NWRTPH
Trigger: GTGCGGGGTCCTCCAGTTGCAGGGGCATTTAAAGAA...CTGCAAACATAGTAGTTTCTGGGCCAAAAGACTGTTAGCCCTATTGTAAGCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
CDS-3UTR CCA 90 bp ATATGGGAAAGCCTTGCTTACAATAGGGCTAACAGTCTTTTGGCCCAGAAACTAATGCTCAAGGGCGATTaGGAAGTCTCCTCGCTCATA +
Preference number: 4 (lower is better)
Translates to: IWESLAYNRANSLLAQKLMLKGD*EVSSLI
Trigger: TATGAGCGAGGAGACTTCCCAATCGCCCTTGAGCAT...TAGTTTCTGGGCCAAAAGACTGTTAGCCCTATTGTAAGCAAGGCTTTCCCATAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
CDS-3UTR CCA 90 bp CTAACAGTCTTTTGGCCCAGAAACTACTATGTTTGCAGCTGTAGAAGTCACAAGTGTTCCAGCATGTCGTaGATTCCTCGCCGAGCAAAA +
Preference number: 4 (lower is better)
Translates to: LTVFWPRNYYVCSCRSHKCSSMS*IPRRAK
Trigger: TTTTGCTCGGCGAGGAATCCACGACATGCTGGAACA...CTTGTGACTTCTACAGCTGCAAACATAGTAGTTTCTGGGCCAAAAGACTGTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
CDS CCA 90 bp GGCAACAAAGCTTCGCCCACCATCTCCGAAGACACAACCAGATGCTaGAGAACCTTGAGCGTCACACAGATGATCTGTCTGTTTCGGAGG +
Preference number: 5 (lower is better)
Translates to: GNKASPTISEDTTRC*RTLSVTQMICLFRR
Trigger: CCTCCGAAACAGACAGATCATCTGTGTGACGCTCAAGGTTCTCCAGCATCTGGTTGTGTCTTCGGAGATGGTGGGCGAAGCTTTGTTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
CDS-3UTR CAA 90 bp TATGGGAAAGCCTTGCTTACAATAGGGCTAACAGTCTTTTGGCCCAGAAACTACCATGCTCAAGGGCGATaGGGAAGTCTCCTCGCTCAT +
Preference number: 5 (lower is better)
Translates to: YGKALLTIGLTVFWPRNYHAQGR*GSLLAH
Trigger: ATGAGCGAGGAGACTTCCCAATCGCCCTTGAGCATG...GTAGTTTCTGGGCCAAAAGACTGTTAGCCCTATTGTAAGCAAGGCTTTCCCATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
CDS-3UTR CAA 90 bp TCTGAGCCAGATAGAGACGCAATTCTCCTTGTGGGGAGAAGAAGAAAAGCACAGATGACAGGTAGAATCTaGTTCCCTCCGTGTTCCAGC +
Preference number: 5 (lower is better)
Translates to: SEPDRDAILLVGRRRKAQMTGRI*FPPCSS
Trigger: GCTGGAACACGGAGGGAACAAGATTCTACCTGTCAT...CTGTGCTTTTCTTCTTCTCCCCACAAGGAGAATTGCGTCTCTATCTGGCTCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
CDS CCA 90 bp CTTCCAGGCAATTTTGTTTCCTTTCGAGTCATGCTCAAGGGCGATTaGGAAGTCTCCTCGCTCATAACATTTTCGGAAAGTGGTGGGTTT +
Preference number: 5 (lower is better)
Translates to: LPGNFVSFRVMLKGD*EVSSLITFSESGGF
Trigger: AAACCCACCACTTTCCGAAAATGTTATGAGCGAGGAGACTTCCCAATCGCCCTTGAGCATGACTCGAAAGGAAACAAAATTGCCTGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
CDS-3UTR CAA 90 bp ACAATAGGGCTAACAGTCTTTTGGCCCAGAAACTACTATGTTTGCAGCTGTAGAAGATGCTGGAGAACCTaGAGCGTCACACAGATGATC +
Preference number: 5 (lower is better)
Translates to: TIGLTVFWPRNYYVCSCRRCWRT*SVTQMI
Trigger: GATCATCTGTGTGACGCTCAAGGTTCTCCAGCATCT...TCTACAGCTGCAAACATAGTAGTTTCTGGGCCAAAAGACTGTTAGCCCTATTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
CDS-3UTR CAA 90 bp TATGGGAAAGCCTTGCTTACAATAGGGCTAACAGTCTTTTGGCCCAGAAACTACTTTTTCATCATGGCTTaGACTGTGAAGCCCTCAGAA +
Preference number: 5 (lower is better)
Translates to: YGKALLTIGLTVFWPRNYFFIMA*TVKPSE
Trigger: TTCTGAGGGCTTCACAGTCAAAGCCATGATGAAAAA...GTAGTTTCTGGGCCAAAAGACTGTTAGCCCTATTGTAAGCAAGGCTTTCCCATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
CDS-3UTR CAA 90 bp ATATGGGAAAGCCTTGCTTACAATAGGGCTAACAGTCTTTTGGCCCAGAAACTAACCTTCCAGGCAATTTaGTTTCCTTTCGAGTCATGC +
Preference number: 5 (lower is better)
Translates to: IWESLAYNRANSLLAQKLTFQAI*FPFESC
Trigger: GCATGACTCGAAAGGAAACAAAATTGCCTGGAAGGT...TAGTTTCTGGGCCAAAAGACTGTTAGCCCTATTGTAAGCAAGGCTTTCCCATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
CDS GCA 72 bp ACTGTGAAGCCCTCAGAAACCAGGGAACGAGGCTGGTaGACCTGGAACGTCTGTTGTGGCAGCAGTTTAGTC +
Preference number: 6 (lower is better)
Translates to: TVKPSETRERGW*TWNVCCGSSLV
Trigger: GACTAAACTGCTGCCACAACAGACGTTCCAGGTGCACCAGCCTCGTTCCCTGGTTTCTGAGGGCTTCACAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
CDS CCA 72 bp GCTTCGCCCACCATCTCCGAAGACACAACCAGATGCTaGAGAACCTTGAGCGTCACACAGATGATCTGTCTG +
Preference number: 6 (lower is better)
Translates to: ASPTISEDTTRC*RTLSVTQMICL
Trigger: CAGACAGATCATCTGTGTGACGCTCAAGGTTCTCCAGCATCTGGTTGTGTCTTCGGAGATGGTGGGCGAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
CDS CAA 90 bp GCTTCGCCCACCATCTCCGAAGACACAACCAGATGCTGGAGAACCTaGAGCGTCACACAGATGATCTGTCTGTTTCGGAGGTTCAAGGCA +
Preference number: 6 (lower is better)
Translates to: ASPTISEDTTRCWRT*SVTQMICLFRRFKA
Trigger: TGCCTTGAACCTCCGAAACAGACAGATCATCTGTGTGACGCTCAAGGTTCTCCAGCATCTGGTTGTGTCTTCGGAGATGGTGGGCGAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
CDS GCA 72 bp AAAGCTTCGCCCACCATCTCCGAAGACACAACCAGATaGTGGAGAACCTTGAGCGTCACACAGATGATCTGT +
Preference number: 6 (lower is better)
Translates to: KASPTISEDTTR*WRTLSVTQMIC
Trigger: ACAGATCATCTGTGTGACGCTCAAGGTTCTCCAGCATCTGGTTGTGTCTTCGGAGATGGTGGGCGAAGCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
CDS CAA 90 bp CCTTCCAGGCAATTTTGTTTCCTTTCGAGTCATGCTCAAGGGCGATaGGGAAGTCTCCTCGCTCATAACATTTTCGGAAAGTGGTGGGTT +
Preference number: 6 (lower is better)
Translates to: PSRQFCFLSSHAQGR*GSLLAHNIFGKWWV
Trigger: AACCCACCACTTTCCGAAAATGTTATGAGCGAGGAGACTTCCCAATCGCCCTTGAGCATGACTCGAAAGGAAACAAAATTGCCTGGAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
CDS CAA 72 bp CAATTTTGTTTCCTTTCGAGTCATGCTCAAGGGCGATaGGGAAGTCTCCTCGCTCATAACATTTTCGGAAAG +
Preference number: 6 (lower is better)
Translates to: QFCFLSSHAQGR*GSLLAHNIFGK
Trigger: CTTTCCGAAAATGTTATGAGCGAGGAGACTTCCCAATCGCCCTTGAGCATGACTCGAAAGGAAACAAAATTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7
CDS CCA 72 bp AATTTTGTTTCCTTTCGAGTCATGCTCAAGGGCGATTaGGAAGTCTCCTCGCTCATAACATTTTCGGAAAGT +
Preference number: 6 (lower is better)
Translates to: NFVSFRVMLKGD*EVSSLITFSES
Trigger: ACTTTCCGAAAATGTTATGAGCGAGGAGACTTCCCAATCGCCCTTGAGCATGACTCGAAAGGAAACAAAATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041463.7