Pregenerated sensors for PACC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026627Ensembl transcript IDs: ENSMUST00000027940.6
Found 100 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CAGAGCCATTATGCTGCGGTCCAGACTTACACTACCTTCTGGGTTTaGTGGCCATACAGCATCAGCGTCCAGCGTTGCTGCCCGCTGGCT | + |
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Preference number: 1 (lower is better) Translates to: QSHYAAVQTYTTFWV*WPYSISVQRCCPLA Trigger: AGCCAGCGGGCAGCAACGCTGGACGCTGATGCTGTATGGCCAGCAAACCCAGAAGGTAGTGTAAGTCTGGACCGCAGCATAATGGCTCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR CCA 90 bp | GGGTTTGCTGGCCATACAGCATCAGCGTCCAGCGTTGCTGCCCGCTaGCTTACTGGGTATTCACTCCCATCCCTTTTGTGCTTGCCCAAC | + |
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Preference number: 1 (lower is better) Translates to: GFAGHTASASSVAAR*LTGYSLPSLLCLPN Trigger: GTTGGGCAAGCACAAAAGGGATGGGAGTGAATACCCAGTAAGCCAGCGGGCAGCAACGCTGGACGCTGATGCTGTATGGCCAGCAAACCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR CCA 90 bp | CTGAGTCAGAGCCATTATGCTGCGGTCCAGACTTACACTACCTTCTaGGTTTGCTGGCCATACAGCATCAGCGTCCAGCGTTGCTGCCCG | + |
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Preference number: 1 (lower is better) Translates to: LSQSHYAAVQTYTTF*VCWPYSISVQRCCP Trigger: CGGGCAGCAACGCTGGACGCTGATGCTGTATGGCCAGCAAACCCAGAAGGTAGTGTAAGTCTGGACCGCAGCATAATGGCTCTGACTCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR TCA 90 bp | CTTGGCCACCTGTGGACAGTGCACAGCTTACCTCCCTGTTGGCAGTaGTGTGTGCTGAGTCAGAGCCATTATGCTGCGGTCCAGACTTAC | + |
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Preference number: 1 (lower is better) Translates to: LGHLWTVHSLPPCWQ*CVLSQSHYAAVQTY Trigger: GTAAGTCTGGACCGCAGCATAATGGCTCTGACTCAGCACACATCACTGCCAACAGGGAGGTAAGCTGTGCACTGTCCACAGGTGGCCAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR CCA 90 bp | TGGCCATACAGCATCAGCGTCCAGCGTTGCTGCCCGCTGGCTTACTaGGTATTCACTCCCATCCCTTTTGTGCTTGCCCAACCTTATTTA | + |
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Preference number: 1 (lower is better) Translates to: WPYSISVQRCCPLAY*VFTPIPFVLAQPYL Trigger: TAAATAAGGTTGGGCAAGCACAAAAGGGATGGGAGTGAATACCCAGTAAGCCAGCGGGCAGCAACGCTGGACGCTGATGCTGTATGGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR TCA 90 bp | TGTGGACAGTGCACAGCTTACCTCCCTGTTGGCAGTGATGTGTGCTaGGTCAGAGCCATTATGCTGCGGTCCAGACTTACACTACCTTCT | + |
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Preference number: 1 (lower is better) Translates to: CGQCTAYLPVGSDVC*VRAIMLRSRLTLPS Trigger: AGAAGGTAGTGTAAGTCTGGACCGCAGCATAATGGCTCTGACTCAGCACACATCACTGCCAACAGGGAGGTAAGCTGTGCACTGTCCACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR GCA 90 bp | GTTGCTGCCCGCTGGCTTACTGGGTATTCACTCCCATCCCTTTTGTaGTTGCCCAACCTTATTTACCTGTTAATGAAATCAAGATACACT | + |
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Preference number: 1 (lower is better) Translates to: VAARWLTGYSLPSLL*LPNLIYLLMKSRYT Trigger: AGTGTATCTTGATTTCATTAACAGGTAAATAAGGTTGGGCAAGCACAAAAGGGATGGGAGTGAATACCCAGTAAGCCAGCGGGCAGCAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR CCA 90 bp | AAGTCAAATCTAGGCTCTAACAAGTTCTTGTTAAGTAACAGTAGATaGTCTAAAAGGAATTCTGCGTACAGGGCACATCAGTCCGCTTTA | + |
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Preference number: 1 (lower is better) Translates to: KSNLGSNKFLLSNSR*SKRNSAYRAHQSAL Trigger: TAAAGCGGACTGATGTGCCCTGTACGCAGAATTCCTTTTAGACCATCTACTGTTACTTAACAAGAACTTGTTAGAGCCTAGATTTGACTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR-3UTR GCA 90 bp | GTGGTGTGGCCATCCCTCTTGGCCACCTGTGGACAGTGCACAGCTTACCTCCCTGGTTTGAGCCTCCAGTaGGATGGACGGGACTGTCCT | + |
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Preference number: 2 (lower is better) Translates to: VVWPSLLATCGQCTAYLPGLSLQ*DGRDCP Trigger: AGGACAGTCCCGTCCATCGCACTGGAGGCTCAAACC...AGGGAGGTAAGCTGTGCACTGTCCACAGGTGGCCAAGAGGGATGGCCACACCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR CAA 90 bp | TCAGAGCCATTATGCTGCGGTCCAGACTTACACTACCTTCTGGGTTaGCTGGCCATACAGCATCAGCGTCCAGCGTTGCTGCCCGCTGGC | + |
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Preference number: 2 (lower is better) Translates to: SEPLCCGPDLHYLLG*LAIQHQRPALLPAG Trigger: GCCAGCGGGCAGCAACGCTGGACGCTGATGCTGTATGGCCAGCAAACCCAGAAGGTAGTGTAAGTCTGGACCGCAGCATAATGGCTCTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR CAA 90 bp | TTCTGTAGGACGCAGGGACTAGCTCATGTGGTGTGGCCATCCCTCTaGGCCACCTGTGGACAGTGCACAGCTTACCTCCCTGTTGGCAGT | + |
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Preference number: 2 (lower is better) Translates to: FCRTQGLAHVVWPSL*ATCGQCTAYLPVGS Trigger: ACTGCCAACAGGGAGGTAAGCTGTGCACTGTCCACAGGTGGCCAAGAGGGATGGCCACACCACATGAGCTAGTCCCTGCGTCCTACAGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR CAA 90 bp | CATCCCTCTTGGCCACCTGTGGACAGTGCACAGCTTACCTCCCTGTaGGCAGTGATGTGTGCTGAGTCAGAGCCATTATGCTGCGGTCCA | + |
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Preference number: 2 (lower is better) Translates to: HPSWPPVDSAQLTSL*AVMCAESEPLCCGP Trigger: TGGACCGCAGCATAATGGCTCTGACTCAGCACACATCACTGCCAACAGGGAGGTAAGCTGTGCACTGTCCACAGGTGGCCAAGAGGGATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR-3UTR TCA 90 bp | GTGATGTGTGCTGAGTCAGAGCCATTATGCTGCGGTCCAGACTTACACTACCTTCAGGGTCCCTTCAAGTaGGTTCAGGATTGCTGGTGT | + |
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Preference number: 2 (lower is better) Translates to: VMCAESEPLCCGPDLHYLQGPFK*VQDCWC Trigger: ACACCAGCAATCCTGAACTCACTTGAAGGGACCCTG...AAGGTAGTGTAAGTCTGGACCGCAGCATAATGGCTCTGACTCAGCACACATCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR CAA 90 bp | AGCGTTGCTGCCCGCTGGCTTACTGGGTATTCACTCCCATCCCTTTaGTGCTTGCCCAACCTTATTTACCTGTTAATGAAATCAAGATAC | + |
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Preference number: 2 (lower is better) Translates to: SVAARWLTGYSLPSL*CLPNLIYLLMKSRY Trigger: GTATCTTGATTTCATTAACAGGTAAATAAGGTTGGGCAAGCACAAAAGGGATGGGAGTGAATACCCAGTAAGCCAGCGGGCAGCAACGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR-3UTR GCA 90 bp | ATGTGTGCTGAGTCAGAGCCATTATGCTGCGGTCCAGACTTACACTACCTTCTGCATCCCTTTTGTGCTTaGCCAACCTTATTTACCTGT | + |
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Preference number: 2 (lower is better) Translates to: MCAESEPLCCGPDLHYLLHPFCA*PTLFTC Trigger: ACAGGTAAATAAGGTTGGGCAAGCACAAAAGGGATG...CAGAAGGTAGTGTAAGTCTGGACCGCAGCATAATGGCTCTGACTCAGCACACAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR CAA 90 bp | GCTGCCCGCTGGCTTACTGGGTATTCACTCCCATCCCTTTTGTGCTaGCCCAACCTTATTTACCTGTTAATGAAATCAAGATACACTAAG | + |
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Preference number: 2 (lower is better) Translates to: AARWLTGYSLPSLLC*PNLIYLLMKSRYTK Trigger: CTTAGTGTATCTTGATTTCATTAACAGGTAAATAAGGTTGGGCAAGCACAAAAGGGATGGGAGTGAATACCCAGTAAGCCAGCGGGCAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR-3UTR CCA 90 bp | CAATGTTACCTCTGGCCACATGTGGAACTCTATTATAGAGTTTTTGGTTTTATGTGTGGCCATCCCTCTTaGCCACCTGTGGACAGTGCA | + |
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Preference number: 2 (lower is better) Translates to: QCYLWPHVELYYRVFGFMCGHPS*PPVDSA Trigger: TGCACTGTCCACAGGTGGCCAAGAGGGATGGCCACA...CATAAAACCAAAAACTCTATAATAGAGTTCCACATGTGGCCAGAGGTAACATTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR-3UTR CCA 90 bp | ATGTGTGCTGAGTCAGAGCCATTATGCTGCGGTCCAGACTTACACTACCTTCTGTTAAGTAACAGTAGATaGTCTAAAAGGAATTCTGCG | + |
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Preference number: 2 (lower is better) Translates to: MCAESEPLCCGPDLHYLLLSNSR*SKRNSA Trigger: CGCAGAATTCCTTTTAGACCATCTACTGTTACTTAA...CAGAAGGTAGTGTAAGTCTGGACCGCAGCATAATGGCTCTGACTCAGCACACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR CAA 90 bp | TTCAATGTTACCTCTGGCCACATGTGGAACTCTATTATAGAGTTTTaGGTTTTATGTAGAGGTGCTGTTTATCAAAGCCCTAAAGGCCAC | + |
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Preference number: 2 (lower is better) Translates to: FNVTSGHMWNSIIEF*VLCRGAVYQSPKGH Trigger: GTGGCCTTTAGGGCTTTGATAAACAGCACCTCTACATAAAACCAAAAACTCTATAATAGAGTTCCACATGTGGCCAGAGGTAACATTGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR GCA 72 bp | GGGCGTTTCCCTCCCGGGCCGGGTTTGAGCCTCCAGTaGGATGGACGGGACTGTCCTTCCCTGCAGGGTCCC | + |
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Preference number: 3 (lower is better) Translates to: GRFPPGPGLSLQ*DGRDCPSLQGP Trigger: GGGACCCTGCAGGGAAGGACAGTCCCGTCCATCGCACTGGAGGCTCAAACCCGGCCCGGGAGGGAAACGCCC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR CCA 72 bp | TTTCCCTCCCGGGCCGGGTTTGAGCCTCCAGTGCGATaGACGGGACTGTCCTTCCCTGCAGGGTCCCTTCAA | + |
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Preference number: 3 (lower is better) Translates to: FPSRAGFEPPVR*TGLSFPAGSLQ Trigger: TTGAAGGGACCCTGCAGGGAAGGACAGTCCCGTCCATCGCACTGGAGGCTCAAACCCGGCCCGGGAGGGAAA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR TCA 72 bp | GGACGGGACTGTCCTTCCCTGCAGGGTCCCTTCAAGTaGGTTCAGGATTGCTGGTGTCTCGCTCTGTCGGAG | + |
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Preference number: 3 (lower is better) Translates to: GRDCPSLQGPFK*VQDCWCLALSE Trigger: CTCCGACAGAGCGAGACACCAGCAATCCTGAACTCACTTGAAGGGACCCTGCAGGGAAGGACAGTCCCGTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR GCA 72 bp | GTGGTGTGGCCATCCCTCTTGGCCACCTGTGGACAGTaGACAGCTTACCTCCCTGTTGGCAGTGATGTGTGC | + |
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Preference number: 3 (lower is better) Translates to: VVWPSLLATCGQ*TAYLPVGSDVC Trigger: GCACACATCACTGCCAACAGGGAGGTAAGCTGTGCACTGTCCACAGGTGGCCAAGAGGGATGGCCACACCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR-3UTR CAA 90 bp | GTGGTGTGGCCATCCCTCTTGGCCACCTGTGGACAGTGCACAGCTTACCTCCCTCACTACCTTCTGGGTTaGCTGGCCATACAGCATCAG | + |
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Preference number: 3 (lower is better) Translates to: VVWPSLLATCGQCTAYLPHYLLG*LAIQHQ Trigger: CTGATGCTGTATGGCCAGCAAACCCAGAAGGTAGTG...AGGGAGGTAAGCTGTGCACTGTCCACAGGTGGCCAAGAGGGATGGCCACACCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR CCA 72 bp | AGCATCAGCGTCCAGCGTTGCTGCCCGCTGGCTTACTaGGTATTCACTCCCATCCCTTTTGTGCTTGCCCAA | + |
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Preference number: 3 (lower is better) Translates to: SISVQRCCPLAY*VFTPIPFVLAQ Trigger: TTGGGCAAGCACAAAAGGGATGGGAGTGAATACCCAGTAAGCCAGCGGGCAGCAACGCTGGACGCTGATGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR TCA 72 bp | CTGTGGACAGTGCACAGCTTACCTCCCTGTTGGCAGTaGTGTGTGCTGAGTCAGAGCCATTATGCTGCGGTC | + |
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Preference number: 3 (lower is better) Translates to: LWTVHSLPPCWQ*CVLSQSHYAAV Trigger: GACCGCAGCATAATGGCTCTGACTCAGCACACATCACTGCCAACAGGGAGGTAAGCTGTGCACTGTCCACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR GCA 72 bp | TATGCTGCGGTCCAGACTTACACTACCTTCTGGGTTTaGTGGCCATACAGCATCAGCGTCCAGCGTTGCTGC | + |
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Preference number: 3 (lower is better) Translates to: YAAVQTYTTFWV*WPYSISVQRCC Trigger: GCAGCAACGCTGGACGCTGATGCTGTATGGCCAGCAAACCCAGAAGGTAGTGTAAGTCTGGACCGCAGCATA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR TCA 72 bp | TGCACAGCTTACCTCCCTGTTGGCAGTGATGTGTGCTaGGTCAGAGCCATTATGCTGCGGTCCAGACTTACA | + |
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Preference number: 3 (lower is better) Translates to: CTAYLPVGSDVC*VRAIMLRSRLT Trigger: TGTAAGTCTGGACCGCAGCATAATGGCTCTGACTCAGCACACATCACTGCCAACAGGGAGGTAAGCTGTGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR-3UTR CAA 90 bp | TGCCCGCTGGCTTACTGGGTATTCACTCCCATCCCTTTTGTGCTTGCCCAACCTGGCTCTAACAAGTTCTaGTTAAGTAACAGTAGATGG | + |
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Preference number: 3 (lower is better) Translates to: CPLAYWVFTPIPFVLAQPGSNKF*LSNSRW Trigger: CCATCTACTGTTACTTAACAAGAACTTGTTAGAGCC...AGGTTGGGCAAGCACAAAAGGGATGGGAGTGAATACCCAGTAAGCCAGCGGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR-3UTR CAA 90 bp | TTTTATGTAGAGGTGCTGTTTATCAAAGCCCTAAAGGCCACCCTTTTAGGTGTGCAAGTGAGTTCAGGATaGCTGGTGTCTCGCTCTGTC | + |
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Preference number: 3 (lower is better) Translates to: FYVEVLFIKALKATLLGVQVSSG*LVSRSV Trigger: GACAGAGCGAGACACCAGCAATCCTGAACTCACTTG...CACACCTAAAAGGGTGGCCTTTAGGGCTTTGATAAACAGCACCTCTACATAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR GCA 72 bp | CGCTGGCTTACTGGGTATTCACTCCCATCCCTTTTGTaGTTGCCCAACCTTATTTACCTGTTAATGAAATCA | + |
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Preference number: 3 (lower is better) Translates to: RWLTGYSLPSLL*LPNLIYLLMKS Trigger: TGATTTCATTAACAGGTAAATAAGGTTGGGCAAGCACAAAAGGGATGGGAGTGAATACCCAGTAAGCCAGCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR CCA 72 bp | CTAGGCTCTAACAAGTTCTTGTTAAGTAACAGTAGATaGTCTAAAAGGAATTCTGCGTACAGGGCACATCAG | + |
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Preference number: 3 (lower is better) Translates to: LGSNKFLLSNSR*SKRNSAYRAHQ Trigger: CTGATGTGCCCTGTACGCAGAATTCCTTTTAGACCATCTACTGTTACTTAACAAGAACTTGTTAGAGCCTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| CDS-3UTR TCA 90 bp | GCAGGGACTAGCTCATGTGGTGTGGCCATCCCTCTTGGCCACCTGTGGACAGTGTCTCACAGGCCTGCATaGAGCCCGCCTTGTCCGGGC | + |
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Preference number: 4 (lower is better) Translates to: AGTSSCGVAIPLGHLWTVSHRPA*SPPCPG Trigger: GCCCGGACAAGGCGGGCTTCATGCAGGCCTGTGAGA...CACTGTCCACAGGTGGCCAAGAGGGATGGCCACACCACATGAGCTAGTCCCTGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR CAA 72 bp | TCCTTCCCTGCAGGGTCCCTTCAAGTGAGTTCAGGATaGCTGGTGTCTCGCTCTGTCGGAGTGCCGTGGCAC | + |
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Preference number: 4 (lower is better) Translates to: SFPAGSLQVSSG*LVSRSVGVPWH Trigger: GTGCCACGGCACTCCGACAGAGCGAGACACCAGCAATCCTGAACTCACTTGAAGGGACCCTGCAGGGAAGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR CAA 72 bp | ACGCAGGGACTAGCTCATGTGGTGTGGCCATCCCTCTaGGCCACCTGTGGACAGTGCACAGCTTACCTCCCT | + |
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Preference number: 4 (lower is better) Translates to: TQGLAHVVWPSL*ATCGQCTAYLP Trigger: AGGGAGGTAAGCTGTGCACTGTCCACAGGTGGCCAAGAGGGATGGCCACACCACATGAGCTAGTCCCTGCGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| CDS-3UTR CCA 90 bp | GCAGGGACTAGCTCATGTGGTGTGGCCATCCCTCTTGGCCACCTGTGGACAGTGGCTCCTGGTAGGACGTaGAGAGTTCTTGTCGGATCA | + |
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Preference number: 4 (lower is better) Translates to: AGTSSCGVAIPLGHLWTVAPGRT*RVLVGS Trigger: TGATCCGACAAGAACTCTCCACGTCCTACCAGGAGC...CACTGTCCACAGGTGGCCAAGAGGGATGGCCACACCACATGAGCTAGTCCCTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| CDS-3UTR TCA 90 bp | GTGGTGTGGCCATCCCTCTTGGCCACCTGTGGACAGTGCACAGCTTACCTCCCTACTGCATGGTGTGGTTaGAGAAGGGGTGGGTGTAAT | + |
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Preference number: 4 (lower is better) Translates to: VVWPSLLATCGQCTAYLPTAWCG*RRGGCN Trigger: ATTACACCCACCCCTTCTTCAACCACACCATGCAGT...AGGGAGGTAAGCTGTGCACTGTCCACAGGTGGCCAAGAGGGATGGCCACACCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| CDS-3UTR TCA 90 bp | TGCCCGCTGGCTTACTGGGTATTCACTCCCATCCCTTTTGTGCTTGCCCAACCTTCACCAGTGACATCTTaGCCCAGGTGCGGAAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: CPLAYWVFTPIPFVLAQPSPVTS*PRCGSL Trigger: GAGGCTTCCGCACCTGGGTCAAGATGTCACTGGTGA...AGGTTGGGCAAGCACAAAAGGGATGGGAGTGAATACCCAGTAAGCCAGCGGGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| CDS-3UTR GCA 90 bp | ACGGGACTGTCCTTCCCTGCAGGGTCCCTTCAAGTGAGTTCAGGATTGCTGGTGGAGTTCTCAACCACCTaGTCCAACTCCTCGCTGAGC | + |
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Preference number: 4 (lower is better) Translates to: TGLSFPAGSLQVSSGLLVEFSTT*SNSSLS Trigger: GCTCAGCGAGGAGTTGGAGCAGGTGGTTGAGAACTC...CACCAGCAATCCTGAACTCACTTGAAGGGACCCTGCAGGGAAGGACAGTCCCGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| CDS-3UTR TCA 90 bp | GCCCTAAAGGCCACCCTTTTAGGTGTGTGTTTCTGTAGGACGCAGGGACTAGCTAGTGGTGCTTACAGCTaGGCAGCTGAGCCTGACCAG | + |
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Preference number: 4 (lower is better) Translates to: ALKATLLGVCFCRTQGLASGAYS*AAEPDQ Trigger: CTGGTCAGGCTCAGCTGCTCAGCTGTAAGCACCACT...AGCTAGTCCCTGCGTCCTACAGAAACACACACCTAAAAGGGTGGCCTTTAGGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| CDS-3UTR TCA 90 bp | TTGGCCACCTGTGGACAGTGCACAGCTTACCTCCCTGTTGGCAGTGATGTGTGCCTGGACAATCAGGGCTaGCTGCATGGTGTGGTTGAA | + |
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Preference number: 4 (lower is better) Translates to: LATCGQCTAYLPVGSDVCLDNQG*LHGVVE Trigger: TTCAACCACACCATGCAGTCAGCCCTGATTGTCCAG...GCACACATCACTGCCAACAGGGAGGTAAGCTGTGCACTGTCCACAGGTGGCCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| CDS-3UTR TCA 90 bp | CGATGGACGGGACTGTCCTTCCCTGCAGGGTCCCTTCAAGTGAGTTCAGGATTGTTTGGTCTTCACCAGTaGCATCTTGACCCAGGTGCG | + |
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Preference number: 4 (lower is better) Translates to: RWTGLSFPAGSLQVSSGLFGLHQ*HLDPGA Trigger: CGCACCTGGGTCAAGATGTCACTGGTGAAGACCAAA...CAATCCTGAACTCACTTGAAGGGACCCTGCAGGGAAGGACAGTCCCGTCCATCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| CDS-3UTR GCA 90 bp | TGCCCGCTGGCTTACTGGGTATTCACTCCCATCCCTTTTGTGCTTGCCCAACCTTCTCGTTCGTCTGCCTaGTCCGAGTTCTCAACCACC | + |
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Preference number: 4 (lower is better) Translates to: CPLAYWVFTPIPFVLAQPSRSSA*SEFSTT Trigger: GGTGGTTGAGAACTCGGAGCAGGCAGACGAACGAGA...AGGTTGGGCAAGCACAAAAGGGATGGGAGTGAATACCCAGTAAGCCAGCGGGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| CDS-3UTR CCA 90 bp | GCCCTAAAGGCCACCCTTTTAGGTGTGTGTTTCTGTAGGACGCAGGGACTAGCTCGCTTCTTCACTTCCTaGGGCCCCTGGACAATCAGG | + |
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Preference number: 4 (lower is better) Translates to: ALKATLLGVCFCRTQGLARFFTS*GPWTIR Trigger: CCTGATTGTCCAGGGGCCCCAGGAAGTGAAGAAGCG...AGCTAGTCCCTGCGTCCTACAGAAACACACACCTAAAAGGGTGGCCTTTAGGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| CDS-3UTR CCA 90 bp | GCCCTAAAGGCCACCCTTTTAGGTGTGTGTTTCTGTAGGACGCAGGGACTAGCTCGCAGAGCAGGGCGATaGTGTTCCAAGGATTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: ALKATLLGVCFCRTQGLARRAGR*CSKDWL Trigger: CAGCCAATCCTTGGAACACCATCGCCCTGCTCTGCG...AGCTAGTCCCTGCGTCCTACAGAAACACACACCTAAAAGGGTGGCCTTTAGGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| 3UTR CAA 72 bp | TGGCCACCTGTGGACAGTGCACAGCTTACCTCCCTGTaGGCAGTGATGTGTGCTGAGTCAGAGCCATTATGC | + |
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Preference number: 4 (lower is better) Translates to: WPPVDSAQLTSL*AVMCAESEPLC Trigger: GCATAATGGCTCTGACTCAGCACACATCACTGCCAACAGGGAGGTAAGCTGTGCACTGTCCACAGGTGGCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| CDS-3UTR GCA 90 bp | GTGATGTGTGCTGAGTCAGAGCCATTATGCTGCGGTCCAGACTTACACTACCTTGCACTCTCACAGGCCTaGATGAAGCCCGCCTTGTCC | + |
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Preference number: 4 (lower is better) Translates to: VMCAESEPLCCGPDLHYLALSQA*MKPALS Trigger: GGACAAGGCGGGCTTCATGCAGGCCTGTGAGAGTGC...AAGGTAGTGTAAGTCTGGACCGCAGCATAATGGCTCTGACTCAGCACACATCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| CDS-3UTR CCA 90 bp | CGATGGACGGGACTGTCCTTCCCTGCAGGGTCCCTTCAAGTGAGTTCAGGATTGAGGGCTGGCAAGAGGTaGAATAACCTCATAGTGGTG | + |
|
Preference number: 4 (lower is better) Translates to: RWTGLSFPAGSLQVSSGLRAGKR*NNLIVV Trigger: CACCACTATGAGGTTATTCCACCTCTTGCCAGCCCT...CAATCCTGAACTCACTTGAAGGGACCCTGCAGGGAAGGACAGTCCCGTCCATCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS-3UTR TCA 90 bp | AGTCTCAGCAATGGGAAGGCACGAGGAAGGCCTGGTCTACACAGTGATTACAGCGGTAGTCTATGGCACTaGAGTCCTCATTGCTCTGGT | + |
|
Preference number: 4 (lower is better) Translates to: SLSNGKARGRPGLHSDYSGSLWH*SPHCSG Trigger: ACCAGAGCAATGAGGACTTCAGTGCCATAGACTACC...GCTGTAATCACTGTGTAGACCAGGCCTTCCTCGTGCCTTCCCATTGCTGAGACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS-3UTR CCA 90 bp | ATGTGTGCTGAGTCAGAGCCATTATGCTGCGGTCCAGACTTACACTACCTTCTGGCTGACTGCATGGTGTaGTTGAAGAAGGGGTGGGTG | + |
|
Preference number: 4 (lower is better) Translates to: MCAESEPLCCGPDLHYLLADCMV*LKKGWV Trigger: CACCCACCCCTTCTTCAACCACACCATGCAGTCAGC...CAGAAGGTAGTGTAAGTCTGGACCGCAGCATAATGGCTCTGACTCAGCACACAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS-3UTR CCA 90 bp | AATGGGAAGGCACGAGGAAGGCCTGGTCTACACAGTGATTACAGCGGGGCTACAATGTCCTGGACCTTCTaGATGAAGGGATCTTTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: NGKARGRPGLHSDYSGATMSWTF*MKGSFH Trigger: ATGGAAAGATCCCTTCATCCAGAAGGTCCAGGACAT...TGTAGCCCCGCTGTAATCACTGTGTAGACCAGGCCTTCCTCGTGCCTTCCCATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS-3UTR CCA 90 bp | GCCCTAAAGGCCACCCTTTTAGGTGTGTGTTTCTGTAGGACGCAGGGACTAGCTGCTGTGATTATGTCCTaGACCTTCTGGATGAAGGGA | + |
|
Preference number: 4 (lower is better) Translates to: ALKATLLGVCFCRTQGLAAVIMS*TFWMKG Trigger: TCCCTTCATCCAGAAGGTCCAGGACATAATCACAGC...AGCTAGTCCCTGCGTCCTACAGAAACACACACCTAAAAGGGTGGCCTTTAGGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS-3UTR GCA 90 bp | AGTCTCAGCAATGGGAAGGCACGAGGAAGGCCTGGTCTACACAGTGATTACAGCTTTGGCAAACTCTGCTaGTTTAAACAACGCCAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: SLSNGKARGRPGLHSDYSFGKLC*FKQRQE Trigger: TTCCTGGCGTTGTTTAAAGCAGCAGAGTTTGCCAAA...GCTGTAATCACTGTGTAGACCAGGCCTTCCTCGTGCCTTCCCATTGCTGAGACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS-3UTR CCA 90 bp | GGCTCTAACAAGTTCTTGTTAAGTAACAGTAGATGGTCTAAAAGGAATTCTGCGACTTCCTGGGGCCCCTaGACAATCAGGGCTGACTGC | + |
|
Preference number: 4 (lower is better) Translates to: GSNKFLLSNSRWSKRNSATSWGP*TIRADC Trigger: GCAGTCAGCCCTGATTGTCCAGGGGCCCCAGGAAGT...CGCAGAATTCCTTTTAGACCATCTACTGTTACTTAACAAGAACTTGTTAGAGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS-3UTR TCA 90 bp | ATCCCTTTTGTGCTTGCCCAACCTTATTTACCTGTTAATGAAATCAAGATACACTCAGGCAAGCCTTGCTaGAGCGGATGCTGCTGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: IPFVLAQPYLPVNEIKIHSGKPC*SGCCWR Trigger: CCTCCAGCAGCATCCGCTTCAGCAAGGCTTGCCTGA...GTGTATCTTGATTTCATTAACAGGTAAATAAGGTTGGGCAAGCACAAAAGGGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| 3UTR CAA 72 bp | GCCCGCTGGCTTACTGGGTATTCACTCCCATCCCTTTaGTGCTTGCCCAACCTTATTTACCTGTTAATGAAA | + |
|
Preference number: 4 (lower is better) Translates to: ARWLTGYSLPSL*CLPNLIYLLMK Trigger: TTTCATTAACAGGTAAATAAGGTTGGGCAAGCACAAAAGGGATGGGAGTGAATACCCAGTAAGCCAGCGGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS-3UTR CCA 90 bp | TTTTATGTAGAGGTGCTGTTTATCAAAGCCCTAAAGGCCACCCTTTTAGGTGTGGCCCGTCCTCTTCTTTaGTCTTCACCAGTGACATCT | + |
|
Preference number: 4 (lower is better) Translates to: FYVEVLFIKALKATLLGVARPLL*SSPVTS Trigger: AGATGTCACTGGTGAAGACCAAAGAAGAGGACGGGC...CACACCTAAAAGGGTGGCCTTTAGGGCTTTGATAAACAGCACCTCTACATAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS-3UTR TCA 90 bp | ATCCCTTTTGTGCTTGCCCAACCTTATTTACCTGTTAATGAAATCAAGATACACTTTCCCGGAAGTCCGTaGTGGTCTGGTAGACCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: IPFVLAQPYLPVNEIKIHFPGSP*WSGRPG Trigger: TCCTGGTCTACCAGACCATCACGGACTTCCGGGAAA...GTGTATCTTGATTTCATTAACAGGTAAATAAGGTTGGGCAAGCACAAAAGGGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS-3UTR TCA 90 bp | GGCTCTAACAAGTTCTTGTTAAGTAACAGTAGATGGTCTAAAAGGAATTCTGCGAGGGGTGGGTGTAATTaGTCCTCTGAGTGGTGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: GSNKFLLSNSRWSKRNSARGGCN*SSEWCS Trigger: ACTGCACCACTCAGAGGATCAATTACACCCACCCCT...CGCAGAATTCCTTTTAGACCATCTACTGTTACTTAACAAGAACTTGTTAGAGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS-3UTR CCA 90 bp | GGCTCTAACAAGTTCTTGTTAAGTAACAGTAGATGGTCTAAAAGGAATTCTGCGCGGAGAACTTCCAACTaGAGTAAGCACTCTCACAGG | + |
|
Preference number: 4 (lower is better) Translates to: GSNKFLLSNSRWSKRNSARRTSN*SKHSHR Trigger: CCTGTGAGAGTGCTTACTCCAGTTGGAAGTTCTCCG...CGCAGAATTCCTTTTAGACCATCTACTGTTACTTAACAAGAACTTGTTAGAGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| 3UTR CAA 72 bp | TGGCTTACTGGGTATTCACTCCCATCCCTTTTGTGCTaGCCCAACCTTATTTACCTGTTAATGAAATCAAGA | + |
|
Preference number: 4 (lower is better) Translates to: WLTGYSLPSLLC*PNLIYLLMKSR Trigger: TCTTGATTTCATTAACAGGTAAATAAGGTTGGGCAAGCACAAAAGGGATGGGAGTGAATACCCAGTAAGCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS CCA 90 bp | GATGCTGCTGGAGGCGGACTCGTTGTCCACGCCTGGCACGACACCTaGACCTTGTACTTGGACCAGCTCCTTGTCTCGTTCGTCTGCCTG | + |
|
Preference number: 5 (lower is better) Translates to: DAAGGGLVVHAWHDT*TLYLDQLLVSFVCL Trigger: CAGGCAGACGAACGAGACAAGGAGCTGGTCCAAGTACAAGGTCCAGGTGTCGTGCCAGGCGTGGACAACGAGTCCGCCTCCAGCAGCATC 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS CCA 90 bp | CTTGCTGAAGCGGATGCTGCTGGAGGCGGACTCGTTGTCCACGCCTaGCACGACACCTGGACCTTGTACTTGGACCAGCTCCTTGTCTCG | + |
|
Preference number: 5 (lower is better) Translates to: LAEADAAGGGLVVHA*HDTWTLYLDQLLVS Trigger: CGAGACAAGGAGCTGGTCCAAGTACAAGGTCCAGGTGTCGTGCCAGGCGTGGACAACGAGTCCGCCTCCAGCAGCATCCGCTTCAGCAAG 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS GCA 90 bp | CCTGGACCTTGTACTTGGACCAGCTCCTTGTCTCGTTCGTCTGCCTaGTCCGAGTTCTCAACCACCTGCTCCAACTCCTCGCTGAGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: PGPCTWTSSLSRSSA*SEFSTTCSNSSLSS Trigger: GGAGCTCAGCGAGGAGTTGGAGCAGGTGGTTGAGAACTCGGAGCAGGCAGACGAACGAGACAAGGAGCTGGTCCAAGTACAAGGTCCAGG 59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS GCA 90 bp | GACACCTGGACCTTGTACTTGGACCAGCTCCTTGTCTCGTTCGTCTaGCTGCTCCGAGTTCTCAACCACCTGCTCCAACTCCTCGCTGAG | + |
|
Preference number: 5 (lower is better) Translates to: DTWTLYLDQLLVSFV*LLRVLNHLLQLLAE Trigger: CTCAGCGAGGAGTTGGAGCAGGTGGTTGAGAACTCGGAGCAGGCAGACGAACGAGACAAGGAGCTGGTCCAAGTACAAGGTCCAGGTGTC 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS-3UTR CAA 90 bp | ACGGGACTGTCCTTCCCTGCAGGGTCCCTTCAAGTGAGTTCAGGATTGCTGGTGTGCATGAAGCCCGCCTaGTCCGGGCTTTGCATGAAC | + |
|
Preference number: 5 (lower is better) Translates to: TGLSFPAGSLQVSSGLLVCMKPA*SGLCMN Trigger: GTTCATGCAAAGCCCGGACAAGGCGGGCTTCATGCA...CACCAGCAATCCTGAACTCACTTGAAGGGACCCTGCAGGGAAGGACAGTCCCGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS CCA 90 bp | TTCAGGCGAAACTGGAGGAACACCAGCTCTCGCTTCTTCACTTCCTaGGGCCCCTGGACAATCAGGGCTGACTGCATGGTGTGGTTGAAG | + |
|
Preference number: 5 (lower is better) Translates to: FRRNWRNTSSRFFTS*GPWTIRADCMVWLK Trigger: CTTCAACCACACCATGCAGTCAGCCCTGATTGTCCAGGGGCCCCAGGAAGTGAAGAAGCGAGAGCTGGTGTTCCTCCAGTTTCGCCTGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS-3UTR CAA 90 bp | TTGGCCACCTGTGGACAGTGCACAGCTTACCTCCCTGTTGGCAGTGATGTGTGCTTCACCAGTGACATCTaGACCCAGGTGCGGAAGCCT | + |
|
Preference number: 5 (lower is better) Translates to: LATCGQCTAYLPVGSDVCFTSDI*TQVRKP Trigger: AGGCTTCCGCACCTGGGTCAAGATGTCACTGGTGAA...GCACACATCACTGCCAACAGGGAGGTAAGCTGTGCACTGTCCACAGGTGGCCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS-3UTR CAA 90 bp | TGCCCGCTGGCTTACTGGGTATTCACTCCCATCCCTTTTGTGCTTGCCCAACCTTTCTTCAGGCAAGCCTaGCTGAAGCGGATGCTGCTG | + |
|
Preference number: 5 (lower is better) Translates to: CPLAYWVFTPIPFVLAQPFFRQA*LKRMLL Trigger: CAGCAGCATCCGCTTCAGCAAGGCTTGCCTGAAGAA...AGGTTGGGCAAGCACAAAAGGGATGGGAGTGAATACCCAGTAAGCCAGCGGGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS-3UTR CAA 90 bp | TACAATCACAAGTTTCTAGTAGCCTTTAAGGTCTCGTGTAAAGCTTGCGGGGAGCTGGAGGCGGACTCGTaGTCCACGCCTGGCACGACA | + |
|
Preference number: 5 (lower is better) Translates to: YNHKFLVAFKVSCKACGELEADS*STPGTT Trigger: TGTCGTGCCAGGCGTGGACAACGAGTCCGCCTCCAG...CTCCCCGCAAGCTTTACACGAGACCTTAAAGGCTACTAGAAACTTGTGATTGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS-3UTR CAA 90 bp | ACGGGACTGTCCTTCCCTGCAGGGTCCCTTCAAGTGAGTTCAGGATTGCTGGTGATGGTGTTCCAAGGATaGGCTGTGATTATGTCCTGG | + |
|
Preference number: 5 (lower is better) Translates to: TGLSFPAGSLQVSSGLLVMVFQG*AVIMSW Trigger: CCAGGACATAATCACAGCCAATCCTTGGAACACCAT...CACCAGCAATCCTGAACTCACTTGAAGGGACCCTGCAGGGAAGGACAGTCCCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS-3UTR CAA 90 bp | GTGGTGTGGCCATCCCTCTTGGCCACCTGTGGACAGTGCACAGCTTACCTCCCTTATCGTTTCCTGATTTaGATCATCCATTTCACGCTT | + |
|
Preference number: 5 (lower is better) Translates to: VVWPSLLATCGQCTAYLPYRFLI*IIHFTL Trigger: AAGCGTGAAATGGATGATCAAAATCAGGAAACGATA...AGGGAGGTAAGCTGTGCACTGTCCACAGGTGGCCAAGAGGGATGGCCACACCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS GCA 90 bp | TTTCCATTCGAAGACCACAAAGAACAACTGAGCACTCCTCTCGGCTaGGGGTCTCTGGTCAATATAGTTAACCACGCTGGTCTCTTGACG | + |
|
Preference number: 5 (lower is better) Translates to: FPFEDHKEQLSTPLG*GSLVNIVNHAGLLT Trigger: CGTCAAGAGACCAGCGTGGTTAACTATATTGACCAGAGACCCGCAGCCGAGAGGAGTGCTCAGTTGTTCTTTGTGGTCTTCGAATGGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS-3UTR CAA 90 bp | CCATCCCTTTTGTGCTTGCCCAACCTTATTTACCTGTTAATGAAATCAAGATACGACATGACAGGGTGCTaGAGCTTTTCCCGGAAGTCC | + |
|
Preference number: 5 (lower is better) Translates to: PSLLCLPNLIYLLMKSRYDMTGC*SFSRKS Trigger: GGACTTCCGGGAAAAGCTCAAGCACCCTGTCATGTC...GTATCTTGATTTCATTAACAGGTAAATAAGGTTGGGCAAGCACAAAAGGGATGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS-3UTR CAA 90 bp | GGCTCTAACAAGTTCTTGTTAAGTAACAGTAGATGGTCTAAAAGGAATTCTGCGCGCCCGTCCTCTTCTTaGGTCTTCACCAGTGACATC | + |
|
Preference number: 5 (lower is better) Translates to: GSNKFLLSNSRWSKRNSARPSSS*VFTSDI Trigger: GATGTCACTGGTGAAGACCAAAGAAGAGGACGGGCG...CGCAGAATTCCTTTTAGACCATCTACTGTTACTTAACAAGAACTTGTTAGAGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS-3UTR CAA 90 bp | CAATGTTACCTCTGGCCACATGTGGAACTCTATTATAGAGTTTTTGGTTTTATGGCACTGAAGTCCTCATaGCTCTGGTTCAGGCGAAAC | + |
|
Preference number: 5 (lower is better) Translates to: QCYLWPHVELYYRVFGFMALKSS*LWFRRN Trigger: GTTTCGCCTGAACCAGAGCAATGAGGACTTCAGTGC...CATAAAACCAAAAACTCTATAATAGAGTTCCACATGTGGCCAGAGGTAACATTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS-3UTR CAA 90 bp | CAATGTTACCTCTGGCCACATGTGGAACTCTATTATAGAGTTTTTGGTTTTATGCATTTCACGCTTAGTTaGGCAAACTCTGCTGCTTTA | + |
|
Preference number: 5 (lower is better) Translates to: QCYLWPHVELYYRVFGFMHFTLS*ANSAAL Trigger: TAAAGCAGCAGAGTTTGCCAAACTAAGCGTGAAATG...CATAAAACCAAAAACTCTATAATAGAGTTCCACATGTGGCCAGAGGTAACATTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS CCA 72 bp | GCGGATGCTGCTGGAGGCGGACTCGTTGTCCACGCCTaGCACGACACCTGGACCTTGTACTTGGACCAGCTC | + |
|
Preference number: 6 (lower is better) Translates to: ADAAGGGLVVHA*HDTWTLYLDQL Trigger: GAGCTGGTCCAAGTACAAGGTCCAGGTGTCGTGCCAGGCGTGGACAACGAGTCCGCCTCCAGCAGCATCCGC 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS CAA 90 bp | GCTGGAGGCGGACTCGTTGTCCACGCCTGGCACGACACCTGGACCTaGTACTTGGACCAGCTCCTTGTCTCGTTCGTCTGCCTGCTCCGA | + |
|
Preference number: 6 (lower is better) Translates to: AGGGLVVHAWHDTWT*YLDQLLVSFVCLLR Trigger: TCGGAGCAGGCAGACGAACGAGACAAGGAGCTGGTCCAAGTACAAGGTCCAGGTGTCGTGCCAGGCGTGGACAACGAGTCCGCCTCCAGC 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS CAA 72 bp | GCCTTGCTGAAGCGGATGCTGCTGGAGGCGGACTCGTaGTCCACGCCTGGCACGACACCTGGACCTTGTACT | + |
|
Preference number: 6 (lower is better) Translates to: ALLKRMLLEADS*STPGTTPGPCT Trigger: AGTACAAGGTCCAGGTGTCGTGCCAGGCGTGGACAACGAGTCCGCCTCCAGCAGCATCCGCTTCAGCAAGGC 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS CAA 90 bp | TTCAGGCAAGCCTTGCTGAAGCGGATGCTGCTGGAGGCGGACTCGTaGTCCACGCCTGGCACGACACCTGGACCTTGTACTTGGACCAGC | + |
|
Preference number: 6 (lower is better) Translates to: FRQALLKRMLLEADS*STPGTTPGPCTWTS Trigger: GCTGGTCCAAGTACAAGGTCCAGGTGTCGTGCCAGGCGTGGACAACGAGTCCGCCTCCAGCAGCATCCGCTTCAGCAAGGCTTGCCTGAA 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS CCA 72 bp | GGAGGCGGACTCGTTGTCCACGCCTGGCACGACACCTaGACCTTGTACTTGGACCAGCTCCTTGTCTCGTTC | + |
|
Preference number: 6 (lower is better) Translates to: GGGLVVHAWHDT*TLYLDQLLVSF Trigger: GAACGAGACAAGGAGCTGGTCCAAGTACAAGGTCCAGGTGTCGTGCCAGGCGTGGACAACGAGTCCGCCTCC 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS CAA 90 bp | TCCACGCCTGGCACGACACCTGGACCTTGTACTTGGACCAGCTCCTaGTCTCGTTCGTCTGCCTGCTCCGAGTTCTCAACCACCTGCTCC | + |
|
Preference number: 6 (lower is better) Translates to: STPGTTPGPCTWTSS*SRSSACSEFSTTCS Trigger: GGAGCAGGTGGTTGAGAACTCGGAGCAGGCAGACGAACGAGACAAGGAGCTGGTCCAAGTACAAGGTCCAGGTGTCGTGCCAGGCGTGGA 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS CCA 72 bp | TTGTCCACGCCTGGCACGACACCTGGACCTTGTACTTaGACCAGCTCCTTGTCTCGTTCGTCTGCCTGCTCC | + |
|
Preference number: 6 (lower is better) Translates to: LSTPGTTPGPCT*TSSLSRSSACS Trigger: GGAGCAGGCAGACGAACGAGACAAGGAGCTGGTCCAAGTACAAGGTCCAGGTGTCGTGCCAGGCGTGGACAA 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS CAA 72 bp | GTTGTCCACGCCTGGCACGACACCTGGACCTTGTACTaGGACCAGCTCCTTGTCTCGTTCGTCTGCCTGCTC | + |
|
Preference number: 6 (lower is better) Translates to: VVHAWHDTWTLY*DQLLVSFVCLL Trigger: GAGCAGGCAGACGAACGAGACAAGGAGCTGGTCCAAGTACAAGGTCCAGGTGTCGTGCCAGGCGTGGACAAC 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS TCA 72 bp | GCTCCGAGTTCTCAACCACCTGCTCCAACTCCTCGCTaGGCTCCTGGTAGGACGTGGAGAGTTCTTGTCGGA | + |
|
Preference number: 6 (lower is better) Translates to: APSSQPPAPTPR*APGRTWRVLVG Trigger: TCCGACAAGAACTCTCCACGTCCTACCAGGAGCTCAGCGAGGAGTTGGAGCAGGTGGTTGAGAACTCGGAGC 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS TCA 72 bp | GCAGGACCGAGAAGACATTCTTCAGGCAAGCCTTGCTaGAGCGGATGCTGCTGGAGGCGGACTCGTTGTCCA | + |
|
Preference number: 6 (lower is better) Translates to: AGPRRHSSGKPC*SGCCWRRTRCP Trigger: TGGACAACGAGTCCGCCTCCAGCAGCATCCGCTTCAGCAAGGCTTGCCTGAAGAATGTCTTCTCGGTCCTGC 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS CCA 72 bp | AACTGGAGGAACACCAGCTCTCGCTTCTTCACTTCCTaGGGCCCCTGGACAATCAGGGCTGACTGCATGGTG | + |
|
Preference number: 6 (lower is better) Translates to: NWRNTSSRFFTS*GPWTIRADCMV Trigger: CACCATGCAGTCAGCCCTGATTGTCCAGGGGCCCCAGGAAGTGAAGAAGCGAGAGCTGGTGTTCCTCCAGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS CAA 72 bp | GGCACGACACCTGGACCTTGTACTTGGACCAGCTCCTaGTCTCGTTCGTCTGCCTGCTCCGAGTTCTCAACC | + |
|
Preference number: 6 (lower is better) Translates to: GTTPGPCTWTSS*SRSSACSEFST Trigger: GGTTGAGAACTCGGAGCAGGCAGACGAACGAGACAAGGAGCTGGTCCAAGTACAAGGTCCAGGTGTCGTGCC 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS GCA 72 bp | TGTACTTGGACCAGCTCCTTGTCTCGTTCGTCTGCCTaGTCCGAGTTCTCAACCACCTGCTCCAACTCCTCG | + |
|
Preference number: 6 (lower is better) Translates to: CTWTSSLSRSSA*SEFSTTCSNSS Trigger: CGAGGAGTTGGAGCAGGTGGTTGAGAACTCGGAGCAGGCAGACGAACGAGACAAGGAGCTGGTCCAAGTACA 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS CCA 72 bp | GAGCAGCTGAGCCTGACCAGGGTAAAAGGCAATCCCTaGAGCGTCGTAGCGATCCACCTCCTTGTAAGACAC | + |
|
Preference number: 6 (lower is better) Translates to: EQLSLTRVKGNP*SVVAIHLLVRH Trigger: GTGTCTTACAAGGAGGTGGATCGCTACGACGCTCCAGGGATTGCCTTTTACCCTGGTCAGGCTCAGCTGCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS CCA 72 bp | AACACCAGCTCTCGCTTCTTCACTTCCTGGGGCCCCTaGACAATCAGGGCTGACTGCATGGTGTGGTTGAAG | + |
|
Preference number: 6 (lower is better) Translates to: NTSSRFFTSWGP*TIRADCMVWLK Trigger: CTTCAACCACACCATGCAGTCAGCCCTGATTGTCCAGGGGCCCCAGGAAGTGAAGAAGCGAGAGCTGGTGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS CAA 72 bp | ATGAGCAGGACCGAGAAGACATTCTTCAGGCAAGCCTaGCTGAAGCGGATGCTGCTGGAGGCGGACTCGTTG | + |
|
Preference number: 6 (lower is better) Translates to: MSRTEKTFFRQA*LKRMLLEADSL Trigger: CAACGAGTCCGCCTCCAGCAGCATCCGCTTCAGCAAGGCTTGCCTGAAGAATGTCTTCTCGGTCCTGCTCAT 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS GCA 72 bp | ACCTTGTACTTGGACCAGCTCCTTGTCTCGTTCGTCTaGCTGCTCCGAGTTCTCAACCACCTGCTCCAACTC | + |
|
Preference number: 6 (lower is better) Translates to: TLYLDQLLVSFV*LLRVLNHLLQL Trigger: GAGTTGGAGCAGGTGGTTGAGAACTCGGAGCAGGCAGACGAACGAGACAAGGAGCTGGTCCAAGTACAAGGT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS CAA 90 bp | CTCGGCTGCGGGTCTCTGGTCAATATAGTTAACCACGCTGGTCTCTaGACGGAACTCAACAGCTTCTCGCCCGTCCTCTTCTTTGGTCTT | + |
|
Preference number: 6 (lower is better) Translates to: LGCGSLVNIVNHAGL*TELNSFSPVLFFGL Trigger: AAGACCAAAGAAGAGGACGGGCGAGAAGCTGTTGAGTTCCGTCAAGAGACCAGCGTGGTTAACTATATTGACCAGAGACCCGCAGCCGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
||
| CDS CAA 72 bp | GGGTCTCTGGTCAATATAGTTAACCACGCTGGTCTCTaGACGGAACTCAACAGCTTCTCGCCCGTCCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: GSLVNIVNHAGL*TELNSFSPVLF Trigger: GAAGAGGACGGGCGAGAAGCTGTTGAGTTCCGTCAAGAGACCAGCGTGGTTAACTATATTGACCAGAGACCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| CDS TCA 72 bp | CCCGGAAAGAAGAGAAGAGGAGGTAGTCTATGGCACTaGAGTCCTCATTGCTCTGGTTCAGGCGAAACTGGA | + |
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Preference number: 6 (lower is better) Translates to: PGKKRRGGSLWH*SPHCSGSGETG Trigger: TCCAGTTTCGCCTGAACCAGAGCAATGAGGACTTCAGTGCCATAGACTACCTCCTCTTCTCTTCTTTCCGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| CDS GCA 72 bp | GAAGACCACAAAGAACAACTGAGCACTCCTCTCGGCTaGGGGTCTCTGGTCAATATAGTTAACCACGCTGGT | + |
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Preference number: 6 (lower is better) Translates to: EDHKEQLSTPLG*GSLVNIVNHAG Trigger: ACCAGCGTGGTTAACTATATTGACCAGAGACCCGCAGCCGAGAGGAGTGCTCAGTTGTTCTTTGTGGTCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| CDS CCA 72 bp | TTCCAAGGATTGGCTGTGATTATGTCCTGGACCTTCTaGATGAAGGGATCTTTCCATTCGAAGACCACAAAG | + |
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Preference number: 6 (lower is better) Translates to: FQGLAVIMSWTF*MKGSFHSKTTK Trigger: CTTTGTGGTCTTCGAATGGAAAGATCCCTTCATCCAGAAGGTCCAGGACATAATCACAGCCAATCCTTGGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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| CDS CAA 90 bp | TGGTTTGTCGCCTGGCCTCTCCGTTTAAGGTATCGTTTCCTGATTTaGATCATCCATTTCACGCTTAGTTTGGCAAACTCTGCTGCTTTA | + |
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Preference number: 6 (lower is better) Translates to: WFVAWPLRLRYRFLI*IIHFTLSLANSAAL Trigger: TAAAGCAGCAGAGTTTGCCAAACTAAGCGTGAAATGGATGATCAAAATCAGGAAACGATACCTTAAACGGAGAGGCCAGGCGACAAACCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027940.6 |
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