Pregenerated sensors for PABPN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022194Ensembl transcript IDs: ENSMUST00000116476.9, ENSMUST00000139985.8, ENSMUST00000141446.8, ENSMUST00000150975.8, ENSMUST00000172695.2
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGCTGGATCCTTCCACACATGGGAAAAATAACCAAGTCCAAACAGTaGTCTCCCTACCCTGAGGCCTCCTCACAGCTCAGGGCAAATAAA | + |
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Preference number: 1 (lower is better) Translates to: SWILPHMGKITKSKQ*SPYPEASSQLRANK Trigger: TTTATTTGCCCTGAGCTGTGAGGAGGCCTCAGGGTAGGGAGAGCACTGTTTGGACTTGGTTATTTTTCCCATGTGTGGAAGGATCCAGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000116476.9 ENSMUST00000150975.8 |
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| 3UTR GCA 90 bp | AATCCACCCTCATCAGTTTCTGTTCAAGAAAACCCAGAACTGGCCTaGCACTATTTCCTTACTCTGCACAAGCAGGACCAAGTCCCTGCA | + |
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Preference number: 1 (lower is better) Translates to: NPPSSVSVQENPELA*HYFLTLHKQDQVPA Trigger: TGCAGGGACTTGGTCCTGCTTGTGCAGAGTAAGGAAATAGTGGCAGGCCAGTTCTGGGTTTTCTTGAACAGAAACTGATGAGGGTGGATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000116476.9 ENSMUST00000141446.8 ENSMUST00000150975.8 |
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| 3UTR TCA 90 bp | TCAGGGCAAATAAACTCTCACTGCCACCAACTCCCAAAAGAAGGCTaGGGGAGGAAACGTCTCAGAACAAATCCACCCTCATCAGTTTCT | + |
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Preference number: 1 (lower is better) Translates to: SGQINSHCHQLPKEG*GRKRLRTNPPSSVS Trigger: AGAAACTGATGAGGGTGGATTTGTTCTGAGACGTTTCCTCCCTCAGCCTTCTTTTGGGAGTTGGTGGCAGTGAGAGTTTATTTGCCCTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000116476.9 ENSMUST00000141446.8 ENSMUST00000150975.8 |
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| 3UTR CCA 90 bp | GAACAAATCCACCCTCATCAGTTTCTGTTCAAGAAAACCCAGAACTaGCCTGCCACTATTTCCTTACTCTGCACAAGCAGGACCAAGTCC | + |
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Preference number: 1 (lower is better) Translates to: EQIHPHQFLFKKTQN*PATISLLCTSRTKS Trigger: GGACTTGGTCCTGCTTGTGCAGAGTAAGGAAATAGTGGCAGGCCAGTTCTGGGTTTTCTTGAACAGAAACTGATGAGGGTGGATTTGTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000116476.9 ENSMUST00000141446.8 ENSMUST00000150975.8 |
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| 3UTR GCA 90 bp | TCTAAGATACTGAGGGACAAGAAAAAGGATCCATTGTTTGTCCAGTaGTCCACAGCACTTAAACCCTATCTGCTAAAAAGGCAGGGTTTA | + |
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Preference number: 1 (lower is better) Translates to: SKILRDKKKDPLFVQ*STALKPYLLKRQGL Trigger: TAAACCCTGCCTTTTTAGCAGATAGGGTTTAAGTGCTGTGGAGCACTGGACAAACAATGGATCCTTTTTCTTGTCCCTCAGTATCTTAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000116476.9 ENSMUST00000150975.8 |
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| 3UTR-3UTR CCA 90 bp | ACTGTAGAATCGAGATCGGGAGCTGTTGTAGTTGGTAGTCCGGGCACGGTATCGGCTCCGGGTCCTCAATaGCGCCGTCGCCGGGGTCGG | + |
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Preference number: 2 (lower is better) Translates to: TVESRSGAVVVGSPGTVSAPGPQ*RRRRGR Trigger: CCGACCCCGGCGACGGCGCCATTGAGGACCCGGAGC...CGATACCGTGCCCGGACTACCAACTACAACAGCTCCCGATCTCGATTCTACAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172695.2 |
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| 3UTR-3UTR CCA 90 bp | AGGACCAAGTCCCTGCAACCAAAGGGAGGACAAGGGAGTAAGGGTCCTCAGGTGAAGCCTAAGGGCTCATaGGAGGCGGGGAAGAGGAGC | + |
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Preference number: 2 (lower is better) Translates to: RTKSLQPKGGQGSKGPQVKPKGS*EAGKRS Trigger: GCTCCTCTTCCCCGCCTCCCATGAGCCCTTAGGCTT...CACCTGAGGACCCTTACTCCCTTGTCCTCCCTTTGGTTGCAGGGACTTGGTCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000116476.9 ENSMUST00000139985.8 ENSMUST00000141446.8 ENSMUST00000150975.8 |
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| 3UTR-3UTR CCA 90 bp | ACCCTGAGGCCTCCTCACAGCTCAGGGCAAATAAACTCTCACTGCCACCAACTCAAGCCTAAGGGCTCATaGGAGGCGGGGAAGAGGAGC | + |
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Preference number: 2 (lower is better) Translates to: TLRPPHSSGQINSHCHQLKPKGS*EAGKRS Trigger: GCTCCTCTTCCCCGCCTCCCATGAGCCCTTAGGCTT...GAGTTGGTGGCAGTGAGAGTTTATTTGCCCTGAGCTGTGAGGAGGCCTCAGGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000116476.9 ENSMUST00000141446.8 ENSMUST00000150975.8 |
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| 3UTR-3UTR GCA 90 bp | CCTGAGGCCTCCTCACAGCTCAGGGCAAATAAACTCTCACTGCCACCAACTCCCGCAGGACCAAGTCCCTaGAACCAAAGGGAGGACAAG | + |
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Preference number: 2 (lower is better) Translates to: PEASSQLRANKLSLPPTPAGPSP*NQREDK Trigger: CTTGTCCTCCCTTTGGTTGCAGGGACTTGGTCCTGC...GGGAGTTGGTGGCAGTGAGAGTTTATTTGCCCTGAGCTGTGAGGAGGCCTCAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000116476.9 ENSMUST00000141446.8 ENSMUST00000150975.8 |
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| 3UTR-3UTR GCA 90 bp | CTAGGCCCCATCAGACAGCTGACCTTGGGAACAGTCCTCCCACGCAGCTGTGGGAACCCAGAACTGGCCTaGCACTATTTCCTTACTCTG | + |
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Preference number: 2 (lower is better) Translates to: LGPIRQLTLGTVLPRSCGNPELA*HYFLTL Trigger: CAGAGTAAGGAAATAGTGGCAGGCCAGTTCTGGGTT...CCCACAGCTGCGTGGGAGGACTGTTCCCAAGGTCAGCTGTCTGATGGGGCCTAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000116476.9 ENSMUST00000150975.8 |
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| 3UTR-3UTR CCA 90 bp | AAATCCACCCTCATCAGTTTCTGTTCAAGAAAACCCAGAACTGGCCTGCCACTAAAGCCTAAGGGCTCATaGGAGGCGGGGAAGAGGAGC | + |
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Preference number: 2 (lower is better) Translates to: KSTLISFCSRKPRTGLPLKPKGS*EAGKRS Trigger: GCTCCTCTTCCCCGCCTCCCATGAGCCCTTAGGCTT...TAGTGGCAGGCCAGTTCTGGGTTTTCTTGAACAGAAACTGATGAGGGTGGATTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000116476.9 ENSMUST00000141446.8 ENSMUST00000150975.8 |
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| 3UTR-3UTR TCA 90 bp | AAGAAAAAGGATCCATTGTTTGTCCAGTGCTCCACAGCACTTAAACCCTATCTGGTGCTCTCCCTACCCTaGGGCCTCCTCACAGCTCAG | + |
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Preference number: 2 (lower is better) Translates to: KKKDPLFVQCSTALKPYLVLSLP*GLLTAQ Trigger: CTGAGCTGTGAGGAGGCCTCAGGGTAGGGAGAGCAC...CAGATAGGGTTTAAGTGCTGTGGAGCACTGGACAAACAATGGATCCTTTTTCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000116476.9 ENSMUST00000150975.8 |
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| 3UTR-3UTR GCA 90 bp | GCCCCAGTGACTGAAGGGAGCACCTCAAAAGTGAGGCCTCAATCCAGGAATAACAACCCAGAACTGGCCTaGCACTATTTCCTTACTCTG | + |
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Preference number: 2 (lower is better) Translates to: APVTEGSTSKVRPQSRNNNPELA*HYFLTL Trigger: CAGAGTAAGGAAATAGTGGCAGGCCAGTTCTGGGTT...GTTATTCCTGGATTGAGGCCTCACTTTTGAGGTGCTCCCTTCAGTCACTGGGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000116476.9 ENSMUST00000150975.8 |
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| 3UTR-3UTR CCA 90 bp | TCAGAACAAATCCACCCTCATCAGTTTCTGTTCAAGAAAACCCAGAACTGGCCTAAGCCTAAGGGCTCATaGGAGGCGGGGAAGAGGAGC | + |
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Preference number: 2 (lower is better) Translates to: SEQIHPHQFLFKKTQNWPKPKGS*EAGKRS Trigger: GCTCCTCTTCCCCGCCTCCCATGAGCCCTTAGGCTT...AGGCCAGTTCTGGGTTTTCTTGAACAGAAACTGATGAGGGTGGATTTGTTCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000116476.9 ENSMUST00000141446.8 ENSMUST00000150975.8 |
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| 3UTR-3UTR TCA 90 bp | AGGGCAAGGAAATATCCATCTAAGATACTGAGGGACAAGAAAAAGGATCCATTGGCCCCATCAGACAGCTaGCCTTGGGAACAGTCCTCC | + |
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Preference number: 2 (lower is better) Translates to: RARKYPSKILRDKKKDPLAPSDS*PWEQSS Trigger: GGAGGACTGTTCCCAAGGTCAGCTGTCTGATGGGGC...CAATGGATCCTTTTTCTTGTCCCTCAGTATCTTAGATGGATATTTCCTTGCCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000116476.9 ENSMUST00000150975.8 |
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| 3UTR-3UTR GCA 90 bp | GTCTCAGAACAAATCCACCCTCATCAGTTTCTGTTCAAGAAAACCCAGAACTGGGCAGGACCAAGTCCCTaGAACCAAAGGGAGGACAAG | + |
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Preference number: 2 (lower is better) Translates to: VSEQIHPHQFLFKKTQNWAGPSP*NQREDK Trigger: CTTGTCCTCCCTTTGGTTGCAGGGACTTGGTCCTGC...CCAGTTCTGGGTTTTCTTGAACAGAAACTGATGAGGGTGGATTTGTTCTGAGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000116476.9 ENSMUST00000141446.8 ENSMUST00000150975.8 |
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| 3UTR-3UTR GCA 90 bp | AGGGCAAGGAAATATCCATCTAAGATACTGAGGGACAAGAAAAAGGATCCATTGACCAAGTCCAAACAGTaGTCTCCCTACCCTGAGGCC | + |
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Preference number: 2 (lower is better) Translates to: RARKYPSKILRDKKKDPLTKSKQ*SPYPEA Trigger: GGCCTCAGGGTAGGGAGAGCACTGTTTGGACTTGGT...CAATGGATCCTTTTTCTTGTCCCTCAGTATCTTAGATGGATATTTCCTTGCCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000116476.9 ENSMUST00000150975.8 |
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| 3UTR-3UTR TCA 90 bp | AGGGCAAGGAAATATCCATCTAAGATACTGAGGGACAAGAAAAAGGATCCATTGCTCCCAAAAGAAGGCTaGGGGAGGAAACGTCTCAGA | + |
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Preference number: 2 (lower is better) Translates to: RARKYPSKILRDKKKDPLLPKEG*GRKRLR Trigger: TCTGAGACGTTTCCTCCCTCAGCCTTCTTTTGGGAG...CAATGGATCCTTTTTCTTGTCCCTCAGTATCTTAGATGGATATTTCCTTGCCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000116476.9 ENSMUST00000150975.8 |
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| 3UTR CAA 90 bp | AGGAAATATCCATCTAAGATACTGAGGGACAAGAAAAAGGATCCATaGTTTGTCCAGTGCTCCACAGCACTTAAACCCTATCTGCTAAAA | + |
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Preference number: 2 (lower is better) Translates to: RKYPSKILRDKKKDP*FVQCSTALKPYLLK Trigger: TTTTAGCAGATAGGGTTTAAGTGCTGTGGAGCACTGGACAAACAATGGATCCTTTTTCTTGTCCCTCAGTATCTTAGATGGATATTTCCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000116476.9 ENSMUST00000150975.8 |
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| 3UTR-3UTR CAA 90 bp | GCTGTTGTAGTTGGTAGTCCGGGCACGGTATCGGGAGCGCGGGAAACCCCGGTCTCCCTGACTCGAGCTTaGATCGCTTCTAGCTCCGGG | + |
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Preference number: 3 (lower is better) Translates to: AVVVGSPGTVSGARETPVSLTRA*IASSSG Trigger: CCCGGAGCTAGAAGCGATCAAAGCTCGAGTCAGGGA...GACCGGGGTTTCCCGCGCTCCCGATACCGTGCCCGGACTACCAACTACAACAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172695.2 |
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| 3UTR-3UTR CAA 90 bp | GCTGTTGTAGTTGGTAGTCCGGGCACGGTATCGGGAGCGCGGGAAACCCCGGTCCGTTTGGGAATCACCTaGATTTGTCTTCCTCTGAAC | + |
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Preference number: 3 (lower is better) Translates to: AVVVGSPGTVSGARETPVRLGIT*ICLPLN Trigger: GTTCAGAGGAAGACAAATCAAGGTGATTCCCAAACG...GACCGGGGTTTCCCGCGCTCCCGATACCGTGCCCGGACTACCAACTACAACAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172695.2 |
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| 3UTR GCA 72 bp | CTATTTCCTTACTCTGCACAAGCAGGACCAAGTCCCTaGAACCAAAGGGAGGACAAGGGAGTAAGGGTCCTC | + |
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Preference number: 3 (lower is better) Translates to: LFPYSAQAGPSP*NQREDKGVRVL Trigger: GAGGACCCTTACTCCCTTGTCCTCCCTTTGGTTGCAGGGACTTGGTCCTGCTTGTGCAGAGTAAGGAAATAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000116476.9 ENSMUST00000141446.8 ENSMUST00000150975.8 |
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| 3UTR GCA 72 bp | CTTCCACACATGGGAAAAATAACCAAGTCCAAACAGTaGTCTCCCTACCCTGAGGCCTCCTCACAGCTCAGG | + |
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Preference number: 3 (lower is better) Translates to: LPHMGKITKSKQ*SPYPEASSQLR Trigger: CCTGAGCTGTGAGGAGGCCTCAGGGTAGGGAGAGCACTGTTTGGACTTGGTTATTTTTCCCATGTGTGGAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000116476.9 ENSMUST00000150975.8 |
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| 3UTR CCA 72 bp | CACCCTCATCAGTTTCTGTTCAAGAAAACCCAGAACTaGCCTGCCACTATTTCCTTACTCTGCACAAGCAGG | + |
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Preference number: 3 (lower is better) Translates to: HPHQFLFKKTQN*PATISLLCTSR Trigger: CCTGCTTGTGCAGAGTAAGGAAATAGTGGCAGGCCAGTTCTGGGTTTTCTTGAACAGAAACTGATGAGGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000116476.9 ENSMUST00000141446.8 ENSMUST00000150975.8 |
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| 3UTR TCA 72 bp | TCTGCTAAAAAGGCAGGGTTTATCTTAATGTGGGACTaGAATGCAAGGACAGAAGTAAATGAAGCCCAGCCA | + |
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Preference number: 3 (lower is better) Translates to: SAKKAGFILMWD*NARTEVNEAQP Trigger: TGGCTGGGCTTCATTTACTTCTGTCCTTGCATTTCAGTCCCACATTAAGATAAACCCTGCCTTTTTAGCAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000116476.9 ENSMUST00000150975.8 |
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| 3UTR TCA 72 bp | TGGGAAACAGGGCAAGGAAATATCCATCTAAGATACTaGGGGACAAGAAAAAGGATCCATTGTTTGTCCAGT | + |
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Preference number: 3 (lower is better) Translates to: WETGQGNIHLRY*GTRKRIHCLSS Trigger: ACTGGACAAACAATGGATCCTTTTTCTTGTCCCTCAGTATCTTAGATGGATATTTCCTTGCCCTGTTTCCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000116476.9 ENSMUST00000150975.8 |
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| CDS-3UTR CCA 90 bp | AGGCCCCATCAGACAGCTGACCTTGGGAACAGTCCTCCCACGCAGCTGTGGGAGGCTCCGGGTCCTCAATaGCGCCGTCGCCGGGGTCGG | + |
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Preference number: 4 (lower is better) Translates to: RPHQTADLGNSPPTQLWEAPGPQ*RRRRGR Trigger: CCGACCCCGGCGACGGCGCCATTGAGGACCCGGAGC...CTCCCACAGCTGCGTGGGAGGACTGTTCCCAAGGTCAGCTGTCTGATGGGGCCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000116476.9 ENSMUST00000150975.8 |
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| CDS-3UTR CCA 90 bp | ACCAAGTCCCTGCAACCAAAGGGAGGACAAGGGAGTAAGGGTCCTCAGGTGAGGGCTCCGGGTCCTCAATaGCGCCGTCGCCGGGGTCGG | + |
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Preference number: 4 (lower is better) Translates to: TKSLQPKGGQGSKGPQVRAPGPQ*RRRRGR Trigger: CCGACCCCGGCGACGGCGCCATTGAGGACCCGGAGC...CCTCACCTGAGGACCCTTACTCCCTTGTCCTCCCTTTGGTTGCAGGGACTTGGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000116476.9 ENSMUST00000150975.8 |
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| CDS-3UTR CCA 90 bp | ATCAGACAGCTGACCTTGGGAACAGTCCTCCCACGCAGCTGTGGGAGGACCAGCGAGAACACAAAGGCTTaGAGTCAAGCCAGAGACTCT | + |
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Preference number: 4 (lower is better) Translates to: IRQLTLGTVLPRSCGRTSENTKA*SQARDS Trigger: AGAGTCTCTGGCTTGACTCCAAGCCTTTGTGTTCTC...GCTGGTCCTCCCACAGCTGCGTGGGAGGACTGTTCCCAAGGTCAGCTGTCTGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150975.8 |
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| CDS-3UTR TCA 90 bp | ATCAGACAGCTGACCTTGGGAACAGTCCTCCCACGCAGCTGTGGGAGGACCAGCCGTTTGGGAATCACCTaGAAAGGACAGAGAACACAA | + |
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Preference number: 4 (lower is better) Translates to: IRQLTLGTVLPRSCGRTSRLGIT*KGQRTQ Trigger: TTGTGTTCTCTGTCCTTTTCAGGTGATTCCCAAACG...GCTGGTCCTCCCACAGCTGCGTGGGAGGACTGTTCCCAAGGTCAGCTGTCTGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150975.8 |
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| CDS-3UTR CCA 90 bp | ACAAGAAAAAGGATCCATTGTTTGTCCAGTGCTCCACAGCACTTAAACCCTATCGTCTGTTGGTTCGTTTaGGAATCACCTGAAAAGGAC | + |
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Preference number: 4 (lower is better) Translates to: TRKRIHCLSSAPQHLNPIVCWFV*ESPEKD Trigger: GTCCTTTTCAGGTGATTCCCAAACGAACCAACAGAC...GATAGGGTTTAAGTGCTGTGGAGCACTGGACAAACAATGGATCCTTTTTCTTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000150975.8 |
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| 3UTR CAA 72 bp | CCATCTAAGATACTGAGGGACAAGAAAAAGGATCCATaGTTTGTCCAGTGCTCCACAGCACTTAAACCCTAT | + |
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Preference number: 4 (lower is better) Translates to: PSKILRDKKKDP*FVQCSTALKPY Trigger: ATAGGGTTTAAGTGCTGTGGAGCACTGGACAAACAATGGATCCTTTTTCTTGTCCCTCAGTATCTTAGATGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000116476.9 ENSMUST00000150975.8 |
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| CDS-3UTR CAA 90 bp | AAGGGAGGACAAGGGAGTAAGGGTCCTCAGGTGAGGAGAGAACGAAGCCTAAGGTCCCTGACTCGAGCTTaGATCGCTTCTAGCTCCGGG | + |
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Preference number: 5 (lower is better) Translates to: KGGQGSKGPQVRRERSLRSLTRA*IASSSG Trigger: CCCGGAGCTAGAAGCGATCAAAGCTCGAGTCAGGGA...CCTTAGGCTTCGTTCTCTCCTCACCTGAGGACCCTTACTCCCTTGTCCTCCCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000116476.9 ENSMUST00000150975.8 |
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| CDS-3UTR CAA 90 bp | CCTGAGGCCTCCTCACAGCTCAGGGCAAATAAACTCTCACTGCCACCAACTCCCAGAGAACACAAAGGCTaGGAGTCAAGCCAGAGACTC | + |
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Preference number: 5 (lower is better) Translates to: PEASSQLRANKLSLPPTPREHKG*ESSQRL Trigger: GAGTCTCTGGCTTGACTCCAAGCCTTTGTGTTCTCT...GGGAGTTGGTGGCAGTGAGAGTTTATTTGCCCTGAGCTGTGAGGAGGCCTCAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150975.8 |
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| CDS-3UTR CAA 90 bp | ACCAACTCCCAAAAGAAGGCTGAGGGAGGAAACGTCTCAGAACAAATCCACCCTTCCCTGACTCGAGCTTaGATCGCTTCTAGCTCCGGG | + |
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Preference number: 5 (lower is better) Translates to: TNSQKKAEGGNVSEQIHPSLTRA*IASSSG Trigger: CCCGGAGCTAGAAGCGATCAAAGCTCGAGTCAGGGA...AGGGTGGATTTGTTCTGAGACGTTTCCTCCCTCAGCCTTCTTTTGGGAGTTGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000116476.9 ENSMUST00000150975.8 |
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| CDS-3UTR CAA 90 bp | AAGGGAGGACAAGGGAGTAAGGGTCCTCAGGTGAGGAGAGAACGAAGCCTAAGGCGTTTGGGAATCACCTaGATTTGTCTTCCTCTGAAC | + |
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Preference number: 5 (lower is better) Translates to: KGGQGSKGPQVRRERSLRRLGIT*ICLPLN Trigger: GTTCAGAGGAAGACAAATCAAGGTGATTCCCAAACG...CCTTAGGCTTCGTTCTCTCCTCACCTGAGGACCCTTACTCCCTTGTCCTCCCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000116476.9 ENSMUST00000139985.8 ENSMUST00000141446.8 |
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| CDS-3UTR CAA 90 bp | ACCCTGAGGCCTCCTCACAGCTCAGGGCAAATAAACTCTCACTGCCACCAACTCCGTTTGGGAATCACCTaGATTTGTCTTCCTCTGAAC | + |
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Preference number: 5 (lower is better) Translates to: TLRPPHSSGQINSHCHQLRLGIT*ICLPLN Trigger: GTTCAGAGGAAGACAAATCAAGGTGATTCCCAAACG...GAGTTGGTGGCAGTGAGAGTTTATTTGCCCTGAGCTGTGAGGAGGCCTCAGGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000116476.9 ENSMUST00000141446.8 |
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| CDS-3UTR CAA 90 bp | CCTCACAGCTCAGGGCAAATAAACTCTCACTGCCACCAACTCCCAAAAGAAGGCCGTTTGGGAATCACCTaGATTTGTCTTCCTCTGAAC | + |
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Preference number: 5 (lower is better) Translates to: PHSSGQINSHCHQLPKEGRLGIT*ICLPLN Trigger: GTTCAGAGGAAGACAAATCAAGGTGATTCCCAAACG...GCCTTCTTTTGGGAGTTGGTGGCAGTGAGAGTTTATTTGCCCTGAGCTGTGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000116476.9 ENSMUST00000141446.8 |
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| CDS CAA 90 bp | TGGTTCGTTTGGGAATCACCTGAAAAGGACAGAGAACACAAAGGCTaGGAGTCAAGCCAGAGACTCTGTACAGGACGGATAGCCAGGGCA | + |
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Preference number: 6 (lower is better) Translates to: WFVWESPEKDREHKG*ESSQRLCTGRIARA Trigger: TGCCCTGGCTATCCGTCCTGTACAGAGTCTCTGGCTTGACTCCAAGCCTTTGTGTTCTCTGTCCTTTTCAGGTGATTCCCAAACGAACCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150975.8 |
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