Pregenerated sensors for PABPC6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046173Ensembl transcript IDs: ENSMUST00000057190.4
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CACTCACCCAGCTCTTCCCTCCCTAGAACCCACTTAGCTCATATCTaGTCCAGAGGGTATCATGCCTGTCTTCCTGATATGTTTGGGTTT | + |
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Preference number: 1 (lower is better) Translates to: HSPSSSLPRTHLAHI*SRGYHACLPDMFGF Trigger: AAACCCAAACATATCAGGAAGACAGGCATGATACCCTCTGGAGCAGATATGAGCTAAGTGGGTTCTAGGGAGGGAAGAGCTGGGTGAGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| 3UTR CCA 90 bp | CCCCTTTGTTATGTTGCTTTTCTACTCAAATCCTCACTCTTTGTATaGAGAAAGGCCACTCACCCAGCTCTTCCCTCCCTAGAACCCACT | + |
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Preference number: 1 (lower is better) Translates to: PLCYVAFLLKSSLFV*RKATHPALPSLEPT Trigger: AGTGGGTTCTAGGGAGGGAAGAGCTGGGTGAGTGGCCTTTCTCCATACAAAGAGTGAGGATTTGAGTAGAAAAGCAACATAACAAAGGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| 3UTR CCA 90 bp | AGGCGGTTCTTTGGTACATCAATTGACAGGGTTGTCAATTACAGATaGCATGTGTTTTGTATCCGGCAACAACTGAGTGGAAATACAGCT | + |
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Preference number: 1 (lower is better) Translates to: RRFFGTSIDRVVNYR*HVFCIRQQLSGNTA Trigger: AGCTGTATTTCCACTCAGTTGTTGCCGGATACAAAACACATGCCATCTGTAATTGACAACCCTGTCAATTGATGTACCAAAGAACCGCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| 3UTR-3UTR GCA 90 bp | GAGAAAGGCCACTCACCCAGCTCTTCCCTCCCTAGAACCCACTTAGCTCATATCCCAAATCATGGTCCTTaGTCAAGTACAAGTTCTGTT | + |
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Preference number: 2 (lower is better) Translates to: EKGHSPSSSLPRTHLAHIPNHGP*SSTSSV Trigger: AACAGAACTTGTACTTGAGCAAGGACCATGATTTGG...GATATGAGCTAAGTGGGTTCTAGGGAGGGAAGAGCTGGGTGAGTGGCCTTTCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| 3UTR CAA 90 bp | CCAAGTGGCTTGGGCTTTGCATTGCTCACTAGACCTGACTCTGACTaGGCACAGGAGATTATAAGTTCCTTTCCCTTTCATTTAGTTTCT | + |
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Preference number: 2 (lower is better) Translates to: PSGLGFALLTRPDSD*AQEIISSFPFHLVS Trigger: AGAAACTAAATGAAAGGGAAAGGAACTTATAATCTCCTGTGCCAAGTCAGAGTCAGGTCTAGTGAGCAATGCAAAGCCCAAGCCACTTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| 3UTR CAA 90 bp | TTAAATGTCACTATTTCTGTTATCTGCTGTCTTAAACCAAGTGGCTaGGGCTTTGCATTGCTCACTAGACCTGACTCTGACTTGGCACAG | + |
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Preference number: 2 (lower is better) Translates to: LNVTISVICCLKPSG*GFALLTRPDSDLAQ Trigger: CTGTGCCAAGTCAGAGTCAGGTCTAGTGAGCAATGCAAAGCCCAAGCCACTTGGTTTAAGACAGCAGATAACAGAAATAGTGACATTTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| 3UTR-3UTR TCA 90 bp | CTCATATCTGCTCCAGAGGGTATCATGCCTGTCTTCCTGATATGTTTGGGTTTTTATAAAGTGGATCAGTaGAGTCCAGAGACTATGGAG | + |
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Preference number: 2 (lower is better) Translates to: LISAPEGIMPVFLICLGFYKVDQ*SPETME Trigger: CTCCATAGTCTCTGGACTTCACTGATCCACTTTATA...AAAACCCAAACATATCAGGAAGACAGGCATGATACCCTCTGGAGCAGATATGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| 3UTR-3UTR CCA 90 bp | AGTAGCCTTCTAGAAGTCTCAGAGGTATTATTAGCCAACAGCGATGCCTTTATTTTAAACCAAGTGGCTTaGGCTTTGCATTGCTCACTA | + |
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Preference number: 2 (lower is better) Translates to: SSLLEVSEVLLANSDAFILNQVA*ALHCSL Trigger: TAGTGAGCAATGCAAAGCCCAAGCCACTTGGTTTAA...AATAAAGGCATCGCTGTTGGCTAATAATACCTCTGAGACTTCTAGAAGGCTACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| 3UTR-3UTR TCA 90 bp | TTCACTTTCTGTAGTTTGTTTTGGACAGAAGCTTCTAAGTTGAAGGCGGTTCTTAAAGCAAGGATACTATaGTCCAAATCATGGTCCTTG | + |
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Preference number: 2 (lower is better) Translates to: FTFCSLFWTEASKLKAVLKARIL*SKSWSL Trigger: CAAGGACCATGATTTGGATCATAGTATCCTTGCTTT...AAGAACCGCCTTCAACTTAGAAGCTTCTGTCCAAAACAAACTACAGAAAGTGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| 3UTR-3UTR CAA 90 bp | GAGAAAGGCCACTCACCCAGCTCTTCCCTCCCTAGAACCCACTTAGCTCATATCGTTGAAGGCGGTTCTTaGGTACATCAATTGACAGGG | + |
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Preference number: 3 (lower is better) Translates to: EKGHSPSSSLPRTHLAHIVEGGS*VHQLTG Trigger: CCCTGTCAATTGATGTACCAAAGAACCGCCTTCAAC...GATATGAGCTAAGTGGGTTCTAGGGAGGGAAGAGCTGGGTGAGTGGCCTTTCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| 3UTR GCA 72 bp | AGCTCTTCCCTCCCTAGAACCCACTTAGCTCATATCTaGTCCAGAGGGTATCATGCCTGTCTTCCTGATATG | + |
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Preference number: 3 (lower is better) Translates to: SSSLPRTHLAHI*SRGYHACLPDM Trigger: CATATCAGGAAGACAGGCATGATACCCTCTGGAGCAGATATGAGCTAAGTGGGTTCTAGGGAGGGAAGAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| 3UTR CCA 72 bp | TATGTTGCTTTTCTACTCAAATCCTCACTCTTTGTATaGAGAAAGGCCACTCACCCAGCTCTTCCCTCCCTA | + |
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Preference number: 3 (lower is better) Translates to: YVAFLLKSSLFV*RKATHPALPSL Trigger: TAGGGAGGGAAGAGCTGGGTGAGTGGCCTTTCTCCATACAAAGAGTGAGGATTTGAGTAGAAAAGCAACATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| 3UTR-3UTR CAA 90 bp | TTCACTTTCTGTAGTTTGTTTTGGACAGAAGCTTCTAAGTTGAAGGCGGTTCTTCAAGTGGCTTGGGCTTaGCATTGCTCACTAGACCTG | + |
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Preference number: 3 (lower is better) Translates to: FTFCSLFWTEASKLKAVLQVAWA*HCSLDL Trigger: CAGGTCTAGTGAGCAATGCAAAGCCCAAGCCACTTG...AAGAACCGCCTTCAACTTAGAAGCTTCTGTCCAAAACAAACTACAGAAAGTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| 3UTR CCA 72 bp | CTATTTCTGTTATCTGCTGTCTTAAACCAAGTGGCTTaGGCTTTGCATTGCTCACTAGACCTGACTCTGACT | + |
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Preference number: 3 (lower is better) Translates to: LFLLSAVLNQVA*ALHCSLDLTLT Trigger: AGTCAGAGTCAGGTCTAGTGAGCAATGCAAAGCCCAAGCCACTTGGTTTAAGACAGCAGATAACAGAAATAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| 3UTR CCA 72 bp | TTTGGTACATCAATTGACAGGGTTGTCAATTACAGATaGCATGTGTTTTGTATCCGGCAACAACTGAGTGGA | + |
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Preference number: 3 (lower is better) Translates to: FGTSIDRVVNYR*HVFCIRQQLSG Trigger: TCCACTCAGTTGTTGCCGGATACAAAACACATGCCATCTGTAATTGACAACCCTGTCAATTGATGTACCAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| 3UTR TCA 72 bp | CTTTCTGTAGTTTGTTTTGGACAGAAGCTTCTAAGTTaGAGGCGGTTCTTTGGTACATCAATTGACAGGGTT | + |
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Preference number: 3 (lower is better) Translates to: LSVVCFGQKLLS*RRFFGTSIDRV Trigger: AACCCTGTCAATTGATGTACCAAAGAACCGCCTTCAACTTAGAAGCTTCTGTCCAAAACAAACTACAGAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| 3UTR-3UTR CAA 90 bp | AAACACAGCAAGATGCCAGTGCATAAATGTATTCTGAATGTTAGATTGAGTTTGTTCACTTTCTGTAGTTaGTTTTGGACAGAAGCTTCT | + |
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Preference number: 3 (lower is better) Translates to: KHSKMPVHKCILNVRLSLFTFCS*FWTEAS Trigger: AGAAGCTTCTGTCCAAAACAAACTACAGAAAGTGAA...CAAACTCAATCTAACATTCAGAATACATTTATGCACTGGCATCTTGCTGTGTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS-3UTR CCA 90 bp | GAGAAAGGCCACTCACCCAGCTCTTCCCTCCCTAGAACCCACTTAGCTCATATCGGTGTGGAGACACTCTaGAGACTCAAGCATGTGGCG | + |
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Preference number: 4 (lower is better) Translates to: EKGHSPSSSLPRTHLAHIGVETL*RLKHVA Trigger: CGCCACATGCTTGAGTCTCCAGAGTGTCTCCACACC...GATATGAGCTAAGTGGGTTCTAGGGAGGGAAGAGCTGGGTGAGTGGCCTTTCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| 3UTR CAA 72 bp | ATCTGCTGTCTTAAACCAAGTGGCTTGGGCTTTGCATaGCTCACTAGACCTGACTCTGACTTGGCACAGGAG | + |
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Preference number: 4 (lower is better) Translates to: ICCLKPSGLGFA*LTRPDSDLAQE Trigger: CTCCTGTGCCAAGTCAGAGTCAGGTCTAGTGAGCAATGCAAAGCCCAAGCCACTTGGTTTAAGACAGCAGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS-3UTR TCA 90 bp | CTCATATCTGCTCCAGAGGGTATCATGCCTGTCTTCCTGATATGTTTGGGTTTTGTCCCCCACATAGAGTaGAGCCAAAGAGTAGCTGGG | + |
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Preference number: 4 (lower is better) Translates to: LISAPEGIMPVFLICLGFVPHIE*SQRVAG Trigger: CCCAGCTACTCTTTGGCTTCACTCTATGTGGGGGAC...AAAACCCAAACATATCAGGAAGACAGGCATGATACCCTCTGGAGCAGATATGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS-3UTR GCA 90 bp | GAGAAAGGCCACTCACCCAGCTCTTCCCTCCCTAGAACCCACTTAGCTCATATCTTCCACTGCCTTTCGTaGATCTTCATGCCTTTCAAA | + |
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Preference number: 4 (lower is better) Translates to: EKGHSPSSSLPRTHLAHIFHCLS*IFMPFK Trigger: TTTGAAAGGCATGAAGATGCACGAAAGGCAGTGGAA...GATATGAGCTAAGTGGGTTCTAGGGAGGGAAGAGCTGGGTGAGTGGCCTTTCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS-3UTR TCA 90 bp | CTCATATCTGCTCCAGAGGGTATCATGCCTGTCTTCCTGATATGTTTGGGTTTTCACCAGCAACACTGCTaGCTGCTTTCTGTGAAGTCT | + |
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Preference number: 4 (lower is better) Translates to: LISAPEGIMPVFLICLGFHQQHC*LLSVKS Trigger: AGACTTCACAGAAAGCAGTCAGCAGTGTTGCTGGTG...AAAACCCAAACATATCAGGAAGACAGGCATGATACCCTCTGGAGCAGATATGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS-3UTR GCA 90 bp | GCTGTCTTAAACCAAGTGGCTTGGGCTTTGCATTGCTCACTAGACCTGACTCTGATTCATCTCTTCCACTaGCTTTCGTGCATCTTCATG | + |
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Preference number: 4 (lower is better) Translates to: AVLNQVAWALHCSLDLTLIHLFH*LSCIFM Trigger: CATGAAGATGCACGAAAGGCAGTGGAAGAGATGAAT...CAGAGTCAGGTCTAGTGAGCAATGCAAAGCCCAAGCCACTTGGTTTAAGACAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS-3UTR GCA 90 bp | TTCACTTTCTGTAGTTTGTTTTGGACAGAAGCTTCTAAGTTGAAGGCGGTTCTTAGCAGCAGCAGCAGCTaGAGGATGTGGGCCCATCAT | + |
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Preference number: 4 (lower is better) Translates to: FTFCSLFWTEASKLKAVLSSSSS*RMWAHH Trigger: ATGATGGGCCCACATCCTGCAGCTGCTGCTGCTGCT...AAGAACCGCCTTCAACTTAGAAGCTTCTGTCCAAAACAAACTACAGAAAGTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS-3UTR CCA 90 bp | GCTGTCTTAAACCAAGTGGCTTGGGCTTTGCATTGCTCACTAGACCTGACTCTGATAGTATGTGATGGGTaGATGGTACTAGACATGTTT | + |
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Preference number: 4 (lower is better) Translates to: AVLNQVAWALHCSLDLTLIVCDG*MVLDMF Trigger: AAACATGTCTAGTACCATCCACCCATCACATACTAT...CAGAGTCAGGTCTAGTGAGCAATGCAAAGCCCAAGCCACTTGGTTTAAGACAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS-3UTR CCA 90 bp | AGTAGCCTTCTAGAAGTCTCAGAGGTATTATTAGCCAACAGCGATGCCTTTATTCTGCGTGCTGACATGTaGCTGTGTATTAGGATGCTG | + |
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Preference number: 4 (lower is better) Translates to: SSLLEVSEVLLANSDAFILRADM*LCIRML Trigger: CAGCATCCTAATACACAGCCACATGTCAGCACGCAG...AATAAAGGCATCGCTGTTGGCTAATAATACCTCTGAGACTTCTAGAAGGCTACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| 3UTR CAA 72 bp | TTGGGCTTTGCATTGCTCACTAGACCTGACTCTGACTaGGCACAGGAGATTATAAGTTCCTTTCCCTTTCAT | + |
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Preference number: 4 (lower is better) Translates to: LGFALLTRPDSD*AQEIISSFPFH Trigger: ATGAAAGGGAAAGGAACTTATAATCTCCTGTGCCAAGTCAGAGTCAGGTCTAGTGAGCAATGCAAAGCCCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS-3UTR CCA 90 bp | GGTACATCAATTGACAGGGTTGTCAATTACAGATGGCATGTGTTTTGTATCCGGAGACATGTTTTGGAATaGATGAGCTCTGGTACCGTG | + |
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Preference number: 4 (lower is better) Translates to: GTSIDRVVNYRWHVFCIRRHVLE*MSSGTV Trigger: CACGGTACCAGAGCTCATCCATTCCAAAACATGTCT...CCGGATACAAAACACATGCCATCTGTAATTGACAACCCTGTCAATTGATGTACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS-3UTR CCA 90 bp | TTCACTTTCTGTAGTTTGTTTTGGACAGAAGCTTCTAAGTTGAAGGCGGTTCTTGAGCAGAGGCCAACATaGAGGCAGTCAAAGACTCTT | + |
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Preference number: 4 (lower is better) Translates to: FTFCSLFWTEASKLKAVLEQRPT*RQSKTL Trigger: AAGAGTCTTTGACTGCCTCCATGTTGGCCTCTGCTC...AAGAACCGCCTTCAACTTAGAAGCTTCTGTCCAAAACAAACTACAGAAAGTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS-3UTR CCA 90 bp | ACTTTCTGTAGTTTGTTTTGGACAGAAGCTTCTAAGTTGAAGGCGGTTCTTTGGCCAACGAACACTTTGTaGTCATTTAGGAACATCCCG | + |
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Preference number: 4 (lower is better) Translates to: TFCSLFWTEASKLKAVLWPTNTL*SFRNIP Trigger: CGGGATGTTCCTAAATGACCACAAAGTGTTCGTTGG...CCAAAGAACCGCCTTCAACTTAGAAGCTTCTGTCCAAAACAAACTACAGAAAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS-3UTR CCA 90 bp | TTCACTTTCTGTAGTTTGTTTTGGACAGAAGCTTCTAAGTTGAAGGCGGTTCTTAAAGACTCTTTACCTTaGACAGGAACAGCAGACCGC | + |
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Preference number: 4 (lower is better) Translates to: FTFCSLFWTEASKLKAVLKDSLP*TGTADR Trigger: GCGGTCTGCTGTTCCTGTCCAAGGTAAAGAGTCTTT...AAGAACCGCCTTCAACTTAGAAGCTTCTGTCCAAAACAAACTACAGAAAGTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS-3UTR GCA 90 bp | TTCACTTTCTGTAGTTTGTTTTGGACAGAAGCTTCTAAGTTGAAGGCGGTTCTTATCTGCCCGAATTTGTaGTTCAGTTCAGTCTGTCGT | + |
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Preference number: 4 (lower is better) Translates to: FTFCSLFWTEASKLKAVLICPNL*FSSVCR Trigger: ACGACAGACTGAACTGAAGCACAAATTCGGGCAGAT...AAGAACCGCCTTCAACTTAGAAGCTTCTGTCCAAAACAAACTACAGAAAGTGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS-3UTR CCA 90 bp | AGTAGCCTTCTAGAAGTCTCAGAGGTATTATTAGCCAACAGCGATGCCTTTATTCTACGTAGAGTGGTTTaGTGGCCACTATTTTACCAT | + |
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Preference number: 4 (lower is better) Translates to: SSLLEVSEVLLANSDAFILRRVV*WPLFYH Trigger: ATGGTAAAATAGTGGCCACCAAACCACTCTACGTAG...AATAAAGGCATCGCTGTTGGCTAATAATACCTCTGAGACTTCTAGAAGGCTACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS-3UTR CCA 90 bp | AAACACAGCAAGATGCCAGTGCATAAATGTATTCTGAATGTTAGATTGAGTTTGCCTACGGCTCTGAGTTaGTGTAGCTGTCATGCAGTA | + |
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Preference number: 4 (lower is better) Translates to: KHSKMPVHKCILNVRLSLPTALS*CSCHAV Trigger: TACTGCATGACAGCTACACCAACTCAGAGCCGTAGG...CAAACTCAATCTAACATTCAGAATACATTTATGCACTGGCATCTTGCTGTGTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS-3UTR CCA 90 bp | AAGCAAGGATACTATGATCCAAATCATGGTCCTTGCTCAAGTACAAGTTCTGTTTCATCAACTTTGGTGTaGAGACACTCTGGAGACTCA | + |
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Preference number: 4 (lower is better) Translates to: KQGYYDPNHGPCSSTSSVSSTLV*RHSGDS Trigger: TGAGTCTCCAGAGTGTCTCCACACCAAAGTTGATGA...AACAGAACTTGTACTTGAGCAAGGACCATGATTTGGATCATAGTATCCTTGCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS-3UTR GCA 90 bp | AAACACAGCAAGATGCCAGTGCATAAATGTATTCTGAATGTTAGATTGAGTTTGACCCGTTCAATTTTGTaGTTATCTTGCTTCATCTGC | + |
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Preference number: 4 (lower is better) Translates to: KHSKMPVHKCILNVRLSLTRSIL*LSCFIC Trigger: GCAGATGAAGCAAGATAAGCACAAAATTGAACGGGT...CAAACTCAATCTAACATTCAGAATACATTTATGCACTGGCATCTTGCTGTGTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS-3UTR GCA 90 bp | AAACACAGCAAGATGCCAGTGCATAAATGTATTCTGAATGTTAGATTGAGTTTGATTTTGTGCTTATCTTaGTTCATCTGCCCGAATTTG | + |
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Preference number: 4 (lower is better) Translates to: KHSKMPVHKCILNVRLSLILCLS*FICPNL Trigger: CAAATTCGGGCAGATGAAGCAAGATAAGCACAAAAT...CAAACTCAATCTAACATTCAGAATACATTTATGCACTGGCATCTTGCTGTGTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS CCA 90 bp | CTCTTTACCTTGGACAGGAACAGCAGACCGCTGCGTGCTGACATGTaGCTGTGTATTAGGATGCTGAGGGGGATTTCGGACTCCAGCAGT | + |
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Preference number: 5 (lower is better) Translates to: LFTLDRNSRPLRADM*LCIRMLRGISDSSS Trigger: ACTGCTGGAGTCCGAAATCCCCCTCAGCATCCTAATACACAGCCACATGTCAGCACGCAGCGGTCTGCTGTTCCTGTCCAAGGTAAAGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS-3UTR CAA 90 bp | GAGAAAGGCCACTCACCCAGCTCTTCCCTCCCTAGAACCCACTTAGCTCATATCCAAAGACTCTTTACCTaGGACAGGAACAGCAGACCG | + |
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Preference number: 5 (lower is better) Translates to: EKGHSPSSSLPRTHLAHIQRLFT*DRNSRP Trigger: CGGTCTGCTGTTCCTGTCCAAGGTAAAGAGTCTTTG...GATATGAGCTAAGTGGGTTCTAGGGAGGGAAGAGCTGGGTGAGTGGCCTTTCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS-3UTR CAA 90 bp | GGTACATCAATTGACAGGGTTGTCAATTACAGATGGCATGTGTTTTGTATCCGGGCCCGGCACTGGTGCTaGCCATTCTTTGCATGTACT | + |
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Preference number: 5 (lower is better) Translates to: GTSIDRVVNYRWHVFCIRARHWC*PFFACT Trigger: AGTACATGCAAAGAATGGCAAGCACCAGTGCCGGGC...CCGGATACAAAACACATGCCATCTGTAATTGACAACCCTGTCAATTGATGTACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS CCA 90 bp | GCCTGCCTGTCTCTACGAGACTTAAAGCGACCAACGAACACTTTGTaGTCATTTAGGAACATCCCGTTCATTTTCTCAATTGCTCGTTCA | + |
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Preference number: 5 (lower is better) Translates to: ACLSLRDLKRPTNTL*SFRNIPFIFSIARS Trigger: TGAACGAGCAATTGAGAAAATGAACGGGATGTTCCTAAATGACCACAAAGTGTTCGTTGGTCGCTTTAAGTCTCGTAGAGACAGGCAGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS-3UTR CAA 90 bp | AAGCAAGGATACTATGATCCAAATCATGGTCCTTGCTCAAGTACAAGTTCTGTTGGTACTAGACATGTTTaGGAATGGATGAGCTCTGGT | + |
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Preference number: 5 (lower is better) Translates to: KQGYYDPNHGPCSSTSSVGTRHV*EWMSSG Trigger: ACCAGAGCTCATCCATTCCAAAACATGTCTAGTACC...AACAGAACTTGTACTTGAGCAAGGACCATGATTTGGATCATAGTATCCTTGCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS-3UTR CAA 90 bp | AGTAGCCTTCTAGAAGTCTCAGAGGTATTATTAGCCAACAGCGATGCCTTTATTAATTTTGTGCTTATCTaGCTTCATCTGCCCGAATTT | + |
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Preference number: 5 (lower is better) Translates to: SSLLEVSEVLLANSDAFINFVLI*LHLPEF Trigger: AAATTCGGGCAGATGAAGCAAGATAAGCACAAAATT...AATAAAGGCATCGCTGTTGGCTAATAATACCTCTGAGACTTCTAGAAGGCTACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS TCA 72 bp | ACGGCTCTGAGTTGGTGTAGCTGTCATGCAGTAACCTaGCGGCCCCTGCGCTGGCTGGAAAGGGCTGACGAC | + |
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Preference number: 6 (lower is better) Translates to: TALSWCSCHAVT*RPLRWLERADD Trigger: GTCGTCAGCCCTTTCCAGCCAGCGCAGGGGCCGTCAGGTTACTGCATGACAGCTACACCAACTCAGAGCCGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS CCA 72 bp | AGGAGCAGCTGCAGCAGCAGCAGCAGCTGCAGGATGTaGGCCCATCATCTGTGTGGATGTGCTGGCAGTACG | + |
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Preference number: 6 (lower is better) Translates to: RSSCSSSSSCRM*AHHLCGCAGST Trigger: CGTACTGCCAGCACATCCACACAGATGATGGGCCCACATCCTGCAGCTGCTGCTGCTGCTGCAGCTGCTCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS CCA 72 bp | TTGGACAGGAACAGCAGACCGCTGCGTGCTGACATGTaGCTGTGTATTAGGATGCTGAGGGGGATTTCGGAC | + |
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Preference number: 6 (lower is better) Translates to: LDRNSRPLRADM*LCIRMLRGISD Trigger: GTCCGAAATCCCCCTCAGCATCCTAATACACAGCCACATGTCAGCACGCAGCGGTCTGCTGTTCCTGTCCAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS CAA 90 bp | TCAGCCTGCCTGTCTCTACGAGACTTAAAGCGACCAACGAACACTTaGTGGTCATTTAGGAACATCCCGTTCATTTTCTCAATTGCTCGT | + |
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Preference number: 6 (lower is better) Translates to: SACLSLRDLKRPTNT*WSFRNIPFIFSIAR Trigger: ACGAGCAATTGAGAAAATGAACGGGATGTTCCTAAATGACCACAAAGTGTTCGTTGGTCGCTTTAAGTCTCGTAGAGACAGGCAGGCTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS CAA 90 bp | TCTGACGCTTCTATCTTGTGGTACCCGTTCAATTTTGTGCTTATCTaGCTTCATCTGCCCGAATTTGTGCTTCAGTTCAGTCTGTCGTTC | + |
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Preference number: 6 (lower is better) Translates to: SDASILWYPFNFVLI*LHLPEFVLQFSLSF Trigger: GAACGACAGACTGAACTGAAGCACAAATTCGGGCAGATGAAGCAAGATAAGCACAAAATTGAACGGGTACCACAAGATAGAAGCGTCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS GCA 72 bp | CTATCTTGTGGTACCCGTTCAATTTTGTGCTTATCTTaGTTCATCTGCCCGAATTTGTGCTTCAGTTCAGTC | + |
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Preference number: 6 (lower is better) Translates to: LSCGTRSILCLS*FICPNLCFSSV Trigger: GACTGAACTGAAGCACAAATTCGGGCAGATGAAGCAAGATAAGCACAAAATTGAACGGGTACCACAAGATAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS CAA 72 bp | CTGTCTCTACGAGACTTAAAGCGACCAACGAACACTTaGTGGTCATTTAGGAACATCCCGTTCATTTTCTCA | + |
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Preference number: 6 (lower is better) Translates to: LSLRDLKRPTNT*WSFRNIPFIFS Trigger: TGAGAAAATGAACGGGATGTTCCTAAATGACCACAAAGTGTTCGTTGGTCGCTTTAAGTCTCGTAGAGACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS CAA 72 bp | TCTATCTTGTGGTACCCGTTCAATTTTGTGCTTATCTaGCTTCATCTGCCCGAATTTGTGCTTCAGTTCAGT | + |
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Preference number: 6 (lower is better) Translates to: SILWYPFNFVLI*LHLPEFVLQFS Trigger: ACTGAACTGAAGCACAAATTCGGGCAGATGAAGCAAGATAAGCACAAAATTGAACGGGTACCACAAGATAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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| CDS CCA 72 bp | TCTCTACGAGACTTAAAGCGACCAACGAACACTTTGTaGTCATTTAGGAACATCCCGTTCATTTTCTCAATT | + |
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Preference number: 6 (lower is better) Translates to: SLRDLKRPTNTL*SFRNIPFIFSI Trigger: AATTGAGAAAATGAACGGGATGTTCCTAAATGACCACAAAGTGTTCGTTGGTCGCTTTAAGTCTCGTAGAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057190.4 |
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