Pregenerated sensors for PABPC5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034732Ensembl transcript IDs: ENSMUST00000040961.3, ENSMUST00000113366.2
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AACACATGTCAGTGTTTGCCAGTGGATATATTCAAACATGACAAGAAACAACATAAGCTATGTAGGCACTaGCTAAGGCTAAACAAATTG | + |
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Preference number: 2 (lower is better) Translates to: NTCQCLPVDIFKHDKKQHKLCRH*LRLNKL Trigger: CAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTT...ATGTTGTTTCTTGTCATGTTTGAATATATCCACTGGCAAACACTGACATGTGTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040961.3 |
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| CDS-3UTR GCA 90 bp | TCTGTCACAAAGGAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGCATAACCCAGGGGGCTaGGGGTCACTGGGTCACGAC | + |
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Preference number: 4 (lower is better) Translates to: SVTKEPKLCRHWLRLNKLHNPGG*GSLGHD Trigger: GTCGTGACCCAGTGACCCGCAGCCCCCTGGGTTATG...CAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTCCTTTGTGACAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR GCA 90 bp | GAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGCTCATAGTAATTCATAACCCAGGGGGCTaGGGGTCACTGGGTCACGAC | + |
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Preference number: 4 (lower is better) Translates to: EPKLCRHWLRLNKLLIVIHNPGG*GSLGHD Trigger: GTCGTGACCCAGTGACCCGCAGCCCCCTGGGTTATG...AATTACTATGAGCAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR CCA 90 bp | TCTGTCACAAAGGAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGGGGGCTGCGGGTCACTaGGTCACGACAGATTCTAGT | + |
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Preference number: 4 (lower is better) Translates to: SVTKEPKLCRHWLRLNKLGAAGH*VTTDSS Trigger: ACTAGAATCTGTCGTGACCCAGTGACCCGCAGCCCC...CAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTCCTTTGTGACAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR TCA 90 bp | TCTGTCACAAAGGAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGAGAGCATGTCCTCTGTaGCGTCAGGGTCCAAGTCAC | + |
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Preference number: 4 (lower is better) Translates to: SVTKEPKLCRHWLRLNKLRACPL*RQGPSH Trigger: GTGACTTGGACCCTGACGTCACAGAGGACATGCTCT...CAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTCCTTTGTGACAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR TCA 90 bp | GAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGCTCATAGTAATTAGAGCATGTCCTCTGTaGCGTCAGGGTCCAAGTCAC | + |
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Preference number: 4 (lower is better) Translates to: EPKLCRHWLRLNKLLIVIRACPL*RQGPSH Trigger: GTGACTTGGACCCTGACGTCACAGAGGACATGCTCT...AATTACTATGAGCAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR TCA 90 bp | GAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGCTCATAGTAATTACGGTCATCTGGCTGTaGCCACATGAGGCGAAATGG | + |
|
Preference number: 4 (lower is better) Translates to: EPKLCRHWLRLNKLLIVITVIWL*PHEAKW Trigger: CCATTTCGCCTCATGTGGTCACAGCCAGATGACCGT...AATTACTATGAGCAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR CCA 90 bp | TCTGTCACAAAGGAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGCGACCAACATATACCTaGCGGTTATTGAGCCGCACT | + |
|
Preference number: 4 (lower is better) Translates to: SVTKEPKLCRHWLRLNKLRPTYT*RLLSRT Trigger: AGTGCGGCTCAATAACCGCCAGGTATATGTTGGTCG...CAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTCCTTTGTGACAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR TCA 90 bp | TCTGTCACAAAGGAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGCATACAGGGCAGCCTTaGGGTACTTCTTTTTCTTGC | + |
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Preference number: 4 (lower is better) Translates to: SVTKEPKLCRHWLRLNKLHTGQP*GTSFSC Trigger: GCAAGAAAAAGAAGTACCTCAAGGCTGCCCTGTATG...CAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTCCTTTGTGACAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR TCA 90 bp | TCTGTCACAAAGGAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGCTCTTTCTCTGGTTCTaGCTTCTGCTGCTCTCTCTT | + |
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Preference number: 4 (lower is better) Translates to: SVTKEPKLCRHWLRLNKLLFLWF*LLLLSL Trigger: AAGAGAGAGCAGCAGAAGTCAGAACCAGAGAAAGAG...CAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTCCTTTGTGACAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR TCA 90 bp | GAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGCTCATAGTAATTGAGGGCCAGCAGGTCTaGACTTCTTATAGAGCATGT | + |
|
Preference number: 4 (lower is better) Translates to: EPKLCRHWLRLNKLLIVIEGQQV*TSYRAC Trigger: ACATGCTCTATAAGAAGTTCAGACCTGCTGGCCCTC...AATTACTATGAGCAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR TCA 90 bp | GAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGCTCATAGTAATTATACCTGGCGGTTATTaGGCCGCACTCCATTCATGT | + |
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Preference number: 4 (lower is better) Translates to: EPKLCRHWLRLNKLLIVIIPGGY*AALHSC Trigger: ACATGAATGGAGTGCGGCTCAATAACCGCCAGGTAT...AATTACTATGAGCAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR GCA 90 bp | GAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGCTCATAGTAATTCGCACTCCATTCATGTaGCAGATAGCCCTATTGGCA | + |
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Preference number: 4 (lower is better) Translates to: EPKLCRHWLRLNKLLIVIRTPFM*QIALLA Trigger: TGCCAATAGGGCTATCTGGCACATGAATGGAGTGCG...AATTACTATGAGCAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR GCA 90 bp | TCTGTCACAAAGGAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGTCTGGTTCTGACTTCTaGTGCTCTCTCTTCAGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: SVTKEPKLCRHWLRLNKLSGSDF*CSLFRK Trigger: TTTCCTGAAGAGAGAGCAGCAGAAGTCAGAACCAGA...CAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTCCTTTGTGACAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR CCA 90 bp | GAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGCTCATAGTAATTCGACCAACATATACCTaGCGGTTATTGAGCCGCACT | + |
|
Preference number: 4 (lower is better) Translates to: EPKLCRHWLRLNKLLIVIRPTYT*RLLSRT Trigger: AGTGCGGCTCAATAACCGCCAGGTATATGTTGGTCG...AATTACTATGAGCAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR TCA 90 bp | GAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGCTCATAGTAATTCATACAGGGCAGCCTTaGGGTACTTCTTTTTCTTGC | + |
|
Preference number: 4 (lower is better) Translates to: EPKLCRHWLRLNKLLIVIHTGQP*GTSFSC Trigger: GCAAGAAAAAGAAGTACCTCAAGGCTGCCCTGTATG...AATTACTATGAGCAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR GCA 90 bp | TCTGTCACAAAGGAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGGGTTCTGACTTCTGCTaGTCTCTCTTCAGGAAATTT | + |
|
Preference number: 4 (lower is better) Translates to: SVTKEPKLCRHWLRLNKLGSDFC*SLFRKF Trigger: AAATTTCCTGAAGAGAGAGCAGCAGAAGTCAGAACC...CAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTCCTTTGTGACAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR GCA 90 bp | TCTGTCACAAAGGAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGTCTATTGACTTGCCATaGAGTTCTAGCACAGCCTTT | + |
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Preference number: 4 (lower is better) Translates to: SVTKEPKLCRHWLRLNKLSIDLP*SSSTAF Trigger: AAAGGCTGTGCTAGAACTGCATGGCAAGTCAATAGA...CAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTCCTTTGTGACAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR GCA 90 bp | TCTGTCACAAAGGAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGTTTCATCCACTGCTTTaGACGCCTCTTCAAAAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: SVTKEPKLCRHWLRLNKLFHPLL*TPLQKK Trigger: CTTCTTTTGAAGAGGCGTGCAAAGCAGTGGATGAAA...CAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTCCTTTGTGACAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR TCA 90 bp | TCTGTCACAAAGGAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGTCACTTTGGCTCGACTaGTTGATCCAAATGAAGAAA | + |
|
Preference number: 4 (lower is better) Translates to: SVTKEPKLCRHWLRLNKLSLWLD*LIQMKK Trigger: TTTCTTCATTTGGATCAATCAGTCGAGCCAAAGTGA...CAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTCCTTTGTGACAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR GCA 90 bp | GAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGCTCATAGTAATTTCTGGTTCTGACTTCTaGTGCTCTCTCTTCAGGAAA | + |
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Preference number: 4 (lower is better) Translates to: EPKLCRHWLRLNKLLIVISGSDF*CSLFRK Trigger: TTTCCTGAAGAGAGAGCAGCAGAAGTCAGAACCAGA...AATTACTATGAGCAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR GCA 90 bp | GAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGCTCATAGTAATTATTCATTGTGTTCAATaGCCATTCAGCATCTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: EPKLCRHWLRLNKLLIVIIHCVQ*PFSICR Trigger: CCTGCAGATGCTGAATGGGCATTGAACACAATGAAT...AATTACTATGAGCAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR GCA 90 bp | GAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGCTCATAGTAATTTCTATTGACTTGCCATaGAGTTCTAGCACAGCCTTT | + |
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Preference number: 4 (lower is better) Translates to: EPKLCRHWLRLNKLLIVISIDLP*SSSTAF Trigger: AAAGGCTGTGCTAGAACTGCATGGCAAGTCAATAGA...AATTACTATGAGCAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR GCA 90 bp | GAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGCTCATAGTAATTTTTCATCCACTGCTTTaGACGCCTCTTCAAAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: EPKLCRHWLRLNKLLIVIFHPLL*TPLQKK Trigger: CTTCTTTTGAAGAGGCGTGCAAAGCAGTGGATGAAA...AATTACTATGAGCAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR TCA 90 bp | GAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGCTCATAGTAATTTCACTTTGGCTCGACTaGTTGATCCAAATGAAGAAA | + |
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Preference number: 4 (lower is better) Translates to: EPKLCRHWLRLNKLLIVISLWLD*LIQMKK Trigger: TTTCTTCATTTGGATCAATCAGTCGAGCCAAAGTGA...AATTACTATGAGCAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR GCA 90 bp | AACACATGTCAGTGTTTGCCAGTGGATATATTCAAACATGACAAGAAACAACATCGCACTCCATTCATGTaGCAGATAGCCCTATTGGCA | + |
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Preference number: 4 (lower is better) Translates to: NTCQCLPVDIFKHDKKQHRTPFM*QIALLA Trigger: TGCCAATAGGGCTATCTGGCACATGAATGGAGTGCG...ATGTTGTTTCTTGTCATGTTTGAATATATCCACTGGCAAACACTGACATGTGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040961.3 |
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| CDS-3UTR TCA 90 bp | AACACATGTCAGTGTTTGCCAGTGGATATATTCAAACATGACAAGAAACAACATCTCTTTCTCTGGTTCTaGCTTCTGCTGCTCTCTCTT | + |
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Preference number: 4 (lower is better) Translates to: NTCQCLPVDIFKHDKKQHLFLWF*LLLLSL Trigger: AAGAGAGAGCAGCAGAAGTCAGAACCAGAGAAAGAG...ATGTTGTTTCTTGTCATGTTTGAATATATCCACTGGCAAACACTGACATGTGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040961.3 |
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| CDS-3UTR GCA 90 bp | AACACATGTCAGTGTTTGCCAGTGGATATATTCAAACATGACAAGAAACAACATGGTTCTGACTTCTGCTaGTCTCTCTTCAGGAAATTT | + |
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Preference number: 4 (lower is better) Translates to: NTCQCLPVDIFKHDKKQHGSDFC*SLFRKF Trigger: AAATTTCCTGAAGAGAGAGCAGCAGAAGTCAGAACC...ATGTTGTTTCTTGTCATGTTTGAATATATCCACTGGCAAACACTGACATGTGTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040961.3 |
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| CDS CCA 90 bp | AAAGCGGAAATTAACATAACCATAACCCAGGGGGCTGCGGGTCACTaGGTCACGACAGATTCTAGTGAAGCGCAGAGGGCCAGCAGGTCT | + |
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Preference number: 5 (lower is better) Translates to: KAEINITITQGAAGH*VTTDSSEAQRASRS Trigger: AGACCTGCTGGCCCTCTGCGCTTCACTAGAATCTGTCGTGACCCAGTGACCCGCAGCCCCCTGGGTTATGGTTATGTTAATTTCCGCTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR CAA 90 bp | TCTGTCACAAAGGAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGTGCCAGATAGCCCTATaGGCAGCAGCAAGGCTATCG | + |
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Preference number: 5 (lower is better) Translates to: SVTKEPKLCRHWLRLNKLCQIAL*AAARLS Trigger: CGATAGCCTTGCTGCTGCCAATAGGGCTATCTGGCA...CAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTCCTTTGTGACAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS CCA 90 bp | TCTGCTGCTCTCTCTTCAGGAAATTTGAATCGACCAACATATACCTaGCGGTTATTGAGCCGCACTCCATTCATGTGCCAGATAGCCCTA | + |
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Preference number: 5 (lower is better) Translates to: SAALSSGNLNRPTYT*RLLSRTPFMCQIAL Trigger: TAGGGCTATCTGGCACATGAATGGAGTGCGGCTCAATAACCGCCAGGTATATGTTGGTCGATTCAAATTTCCTGAAGAGAGAGCAGCAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR CAA 90 bp | TCTGTCACAAAGGAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGTATACCTGGCGGTTATaGAGCCGCACTCCATTCATG | + |
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Preference number: 5 (lower is better) Translates to: SVTKEPKLCRHWLRLNKLYTWRL*SRTPFM Trigger: CATGAATGGAGTGCGGCTCAATAACCGCCAGGTATA...CAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTCCTTTGTGACAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS GCA 90 bp | TCTTCTGTGCTCTCCCTACACATAGGACTTTCCCATCTATTGACTTaGCATGCAGTTCTAGCACAGCCTTTTGGGCAGCTTCATGTGTTT | + |
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Preference number: 5 (lower is better) Translates to: SSVLSLHIGLSHLLT*HAVLAQPFGQLHVF Trigger: AAACACATGAAGCTGCCCAAAAGGCTGTGCTAGAACTGCATGGCAAGTCAATAGATGGGAAAGTCCTATGTGTAGGGAGAGCACAGAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR CAA 90 bp | TCTGTCACAAAGGAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGACCAAACCCTTTTCCTaGTCCCACTTCCATCATCAC | + |
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Preference number: 5 (lower is better) Translates to: SVTKEPKLCRHWLRLNKLTKPFS*SHFHHH Trigger: GTGATGATGGAAGTGGGACAAGGAAAAGGGTTTGGT...CAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTCCTTTGTGACAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR CAA 90 bp | TCTGTCACAAAGGAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGGTGACATGCAATGTCTaGGAGCCTATTATGCGACCA | + |
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Preference number: 5 (lower is better) Translates to: SVTKEPKLCRHWLRLNKLVTCNV*EPIMRP Trigger: TGGTCGCATAATAGGCTCCAAGACATTGCATGTCAC...CAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTCCTTTGTGACAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS GCA 90 bp | TGTGCTCTCCCTACACATAGGACTTTCCCATCTATTGACTTGCCATaGAGTTCTAGCACAGCCTTTTGGGCAGCTTCATGTGTTTCATAT | + |
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Preference number: 5 (lower is better) Translates to: CALPTHRTFPSIDLP*SSSTAFWAASCVSY Trigger: ATATGAAACACATGAAGCTGCCCAAAAGGCTGTGCTAGAACTGCATGGCAAGTCAATAGATGGGAAAGTCCTATGTGTAGGGAGAGCACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR CAA 90 bp | TCTGTCACAAAGGAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGAGGTACTTCTTTTTCTaGCCAGCAGTATTAGGCTCC | + |
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Preference number: 5 (lower is better) Translates to: SVTKEPKLCRHWLRLNKLRYFFF*PAVLGS Trigger: GGAGCCTAATACTGCTGGCAAGAAAAAGAAGTACCT...CAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTCCTTTGTGACAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR CAA 90 bp | TCTGTCACAAAGGAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGACATACAGGGCAGCCTaGAGGTACTTCTTTTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: SVTKEPKLCRHWLRLNKLTYRAA*RYFFFL Trigger: CAAGAAAAAGAAGTACCTCAAGGCTGCCCTGTATGT...CAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTCCTTTGTGACAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR CAA 90 bp | TCTGTCACAAAGGAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGATTTCATCCACTGCTTaGCACGCCTCTTCAAAAGAA | + |
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Preference number: 5 (lower is better) Translates to: SVTKEPKLCRHWLRLNKLISSTA*HASSKE Trigger: TTCTTTTGAAGAGGCGTGCAAAGCAGTGGATGAAAT...CAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTCCTTTGTGACAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR CAA 90 bp | GAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGCTCATAGTAATTGTGACATGCAATGTCTaGGAGCCTATTATGCGACCA | + |
|
Preference number: 5 (lower is better) Translates to: EPKLCRHWLRLNKLLIVIVTCNV*EPIMRP Trigger: TGGTCGCATAATAGGCTCCAAGACATTGCATGTCAC...AATTACTATGAGCAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR CAA 90 bp | GAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGCTCATAGTAATTACATACAGGGCAGCCTaGAGGTACTTCTTTTTCTTG | + |
|
Preference number: 5 (lower is better) Translates to: EPKLCRHWLRLNKLLIVITYRAA*RYFFFL Trigger: CAAGAAAAAGAAGTACCTCAAGGCTGCCCTGTATGT...AATTACTATGAGCAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR CAA 90 bp | TCTGTCACAAAGGAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGCTCTCTTCAGGAAATTaGAATCGACCAACATATACC | + |
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Preference number: 5 (lower is better) Translates to: SVTKEPKLCRHWLRLNKLLSSGN*NRPTYT Trigger: GGTATATGTTGGTCGATTCAAATTTCCTGAAGAGAG...CAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTCCTTTGTGACAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR CAA 90 bp | GAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGCTCATAGTAATTACTTCCATCATCACTTaGGCTCGACTGATTGATCCA | + |
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Preference number: 5 (lower is better) Translates to: EPKLCRHWLRLNKLLIVITSIIT*ARLIDP Trigger: TGGATCAATCAGTCGAGCCAAAGTGATGATGGAAGT...AATTACTATGAGCAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR CAA 90 bp | AACACATGTCAGTGTTTGCCAGTGGATATATTCAAACATGACAAGAAACAACATTATACCTGGCGGTTATaGAGCCGCACTCCATTCATG | + |
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Preference number: 5 (lower is better) Translates to: NTCQCLPVDIFKHDKKQHYTWRL*SRTPFM Trigger: CATGAATGGAGTGCGGCTCAATAACCGCCAGGTATA...ATGTTGTTTCTTGTCATGTTTGAATATATCCACTGGCAAACACTGACATGTGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040961.3 |
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| CDS-3UTR CAA 90 bp | GAGCCCAAGCTATGTAGGCACTGGCTAAGGCTAAACAAATTGCTCATAGTAATTCTCTCTTCAGGAAATTaGAATCGACCAACATATACC | + |
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Preference number: 5 (lower is better) Translates to: EPKLCRHWLRLNKLLIVILSSGN*NRPTYT Trigger: GGTATATGTTGGTCGATTCAAATTTCCTGAAGAGAG...AATTACTATGAGCAATTTGTTTAGCCTTAGCCAGTGCCTACATAGCTTGGGCTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS GCA 90 bp | TACGAAAACATTGGTAAATGTTGCTCTTTCTCTGGTTCTGACTTCTaGTGCTCTCTCTTCAGGAAATTTGAATCGACCAACATATACCTG | + |
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Preference number: 5 (lower is better) Translates to: YENIGKCCSFSGSDF*CSLFRKFESTNIYL Trigger: CAGGTATATGTTGGTCGATTCAAATTTCCTGAAGAGAGAGCAGCAGAAGTCAGAACCAGAGAAAGAGCAACATTTACCAATGTTTTCGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS-3UTR CAA 90 bp | AACACATGTCAGTGTTTGCCAGTGGATATATTCAAACATGACAAGAAACAACATACCAAACCCTTTTCCTaGTCCCACTTCCATCATCAC | + |
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Preference number: 5 (lower is better) Translates to: NTCQCLPVDIFKHDKKQHTKPFS*SHFHHH Trigger: GTGATGATGGAAGTGGGACAAGGAAAAGGGTTTGGT...ATGTTGTTTCTTGTCATGTTTGAATATATCCACTGGCAAACACTGACATGTGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040961.3 |
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| CDS-3UTR CAA 90 bp | AACACATGTCAGTGTTTGCCAGTGGATATATTCAAACATGACAAGAAACAACATAGGTACTTCTTTTTCTaGCCAGCAGTATTAGGCTCC | + |
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Preference number: 5 (lower is better) Translates to: NTCQCLPVDIFKHDKKQHRYFFF*PAVLGS Trigger: GGAGCCTAATACTGCTGGCAAGAAAAAGAAGTACCT...ATGTTGTTTCTTGTCATGTTTGAATATATCCACTGGCAAACACTGACATGTGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040961.3 |
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| CDS-3UTR CAA 90 bp | AACACATGTCAGTGTTTGCCAGTGGATATATTCAAACATGACAAGAAACAACATATTTCATCCACTGCTTaGCACGCCTCTTCAAAAGAA | + |
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Preference number: 5 (lower is better) Translates to: NTCQCLPVDIFKHDKKQHISSTA*HASSKE Trigger: TTCTTTTGAAGAGGCGTGCAAAGCAGTGGATGAAAT...ATGTTGTTTCTTGTCATGTTTGAATATATCCACTGGCAAACACTGACATGTGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040961.3 |
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| CDS CCA 72 bp | ATTAACATAACCATAACCCAGGGGGCTGCGGGTCACTaGGTCACGACAGATTCTAGTGAAGCGCAGAGGGCC | + |
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Preference number: 6 (lower is better) Translates to: INITITQGAAGH*VTTDSSEAQRA Trigger: GGCCCTCTGCGCTTCACTAGAATCTGTCGTGACCCAGTGACCCGCAGCCCCCTGGGTTATGGTTATGTTAAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS GCA 72 bp | TATACCTGGCGGTTATTGAGCCGCACTCCATTCATGTaGCAGATAGCCCTATTGGCAGCAGCAAGGCTATCG | + |
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Preference number: 6 (lower is better) Translates to: YTWRLLSRTPFM*QIALLAAARLS Trigger: CGATAGCCTTGCTGCTGCCAATAGGGCTATCTGGCACATGAATGGAGTGCGGCTCAATAACCGCCAGGTATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS CAA 90 bp | TCCTCTGTGACGTCAGGGTCCAAGTCACCTACATACAGGGCAGCCTaGAGGTACTTCTTTTTCTTGCCAGCAGTATTAGGCTCCCCACTC | + |
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Preference number: 6 (lower is better) Translates to: SSVTSGSKSPTYRAA*RYFFFLPAVLGSPL Trigger: GAGTGGGGAGCCTAATACTGCTGGCAAGAAAAAGAAGTACCTCAAGGCTGCCCTGTATGTAGGTGACTTGGACCCTGACGTCACAGAGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS CAA 72 bp | GCTCTCCCTACACATAGGACTTTCCCATCTATTGACTaGCCATGCAGTTCTAGCACAGCCTTTTGGGCAGCT | + |
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Preference number: 6 (lower is better) Translates to: ALPTHRTFPSID*PCSSSTAFWAA Trigger: AGCTGCCCAAAAGGCTGTGCTAGAACTGCATGGCAAGTCAATAGATGGGAAAGTCCTATGTGTAGGGAGAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS GCA 72 bp | CTCTCCCTACACATAGGACTTTCCCATCTATTGACTTaGCATGCAGTTCTAGCACAGCCTTTTGGGCAGCTT | + |
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Preference number: 6 (lower is better) Translates to: LSLHIGLSHLLT*HAVLAQPFGQL Trigger: AAGCTGCCCAAAAGGCTGTGCTAGAACTGCATGGCAAGTCAATAGATGGGAAAGTCCTATGTGTAGGGAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS CAA 72 bp | CTGTGCCTAGCTTGCCCCAGAGTGACATGCAATGTCTaGGAGCCTATTATGCGACCATTCATTTCATCCACT | + |
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Preference number: 6 (lower is better) Translates to: LCLACPRVTCNV*EPIMRPFISST Trigger: AGTGGATGAAATGAATGGTCGCATAATAGGCTCCAAGACATTGCATGTCACTCTGGGGCAAGCTAGGCACAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS CAA 90 bp | CTCTCTTCAGGAAATTTGAATCGACCAACATATACCTGGCGGTTATaGAGCCGCACTCCATTCATGTGCCAGATAGCCCTATTGGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: LSSGNLNRPTYTWRL*SRTPFMCQIALLAA Trigger: TGCTGCCAATAGGGCTATCTGGCACATGAATGGAGTGCGGCTCAATAACCGCCAGGTATATGTTGGTCGATTCAAATTTCCTGAAGAGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS CAA 90 bp | TTCTTCTGTGCTCTCCCTACACATAGGACTTTCCCATCTATTGACTaGCCATGCAGTTCTAGCACAGCCTTTTGGGCAGCTTCATGTGTT | + |
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Preference number: 6 (lower is better) Translates to: FFCALPTHRTFPSID*PCSSSTAFWAASCV Trigger: AACACATGAAGCTGCCCAAAAGGCTGTGCTAGAACTGCATGGCAAGTCAATAGATGGGAAAGTCCTATGTGTAGGGAGAGCACAGAAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS CCA 72 bp | CTCTCTTCAGGAAATTTGAATCGACCAACATATACCTaGCGGTTATTGAGCCGCACTCCATTCATGTGCCAG | + |
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Preference number: 6 (lower is better) Translates to: LSSGNLNRPTYT*RLLSRTPFMCQ Trigger: CTGGCACATGAATGGAGTGCGGCTCAATAACCGCCAGGTATATGTTGGTCGATTCAAATTTCCTGAAGAGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS CAA 72 bp | GGAAATTTGAATCGACCAACATATACCTGGCGGTTATaGAGCCGCACTCCATTCATGTGCCAGATAGCCCTA | + |
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Preference number: 6 (lower is better) Translates to: GNLNRPTYTWRL*SRTPFMCQIAL Trigger: TAGGGCTATCTGGCACATGAATGGAGTGCGGCTCAATAACCGCCAGGTATATGTTGGTCGATTCAAATTTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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| CDS CAA 72 bp | GAGCCTATTATGCGACCATTCATTTCATCCACTGCTTaGCACGCCTCTTCAAAAGAAGAAAAGCAGACAACA | + |
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Preference number: 6 (lower is better) Translates to: EPIMRPFISSTA*HASSKEEKQTT Trigger: TGTTGTCTGCTTTTCTTCTTTTGAAGAGGCGTGCAAAGCAGTGGATGAAATGAATGGTCGCATAATAGGCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040961.3 ENSMUST00000113366.2 |
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