Pregenerated sensors for PA2G4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025364Ensembl transcript IDs: ENSMUST00000026425.13, ENSMUST00000131728.4
Found 36 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TGCCTAAGCAGGTCACAAGGAATCTGCCACCACAGCCAGCCCTCTTTGAGGGCATGCGGTGGGAGGGGGTaGGGCAGGAATGACAAGCTG | + |
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Preference number: 2 (lower is better) Translates to: CLSRSQGICHHSQPSLRACGGRG*GRNDKL Trigger: CAGCTTGTCATTCCTGCCTCACCCCCTCCCACCGCA...TGCCCTCAAAGAGGGCTGGCTGTGGTGGCAGATTCCTTGTGACCTGCTTAGGCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| 3UTR-3UTR CCA 90 bp | CAGTCCAGGCCTCCATGCTGGTGGATAACCTCACCTCCTTTCTGTTTTGTAGTTGCACTTGACAGAGCCTaGGGTGCGGTGGGAGGGGGT | + |
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Preference number: 2 (lower is better) Translates to: QSRPPCWWITSPPFCFVVALDRA*GAVGGG Trigger: ACCCCCTCCCACCGCACCCCAGGCTCTGTCAAGTGC...AACTACAAAACAGAAAGGAGGTGAGGTTATCCACCAGCATGGAGGCCTGGACTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| 3UTR-3UTR CCA 90 bp | CAGGTCACAAGGAATCTGCCACCACAGCCAGCCCTCTTTGAGGGCAGATTAAATGGTGGCTGGGAAGCCTaGCCTCCCAACACCAGAGTC | + |
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Preference number: 2 (lower is better) Translates to: QVTRNLPPQPALFEGRLNGGWEA*PPNTRV Trigger: GACTCTGGTGTTGGGAGGCCAGGCTTCCCAGCCACC...ATTTAATCTGCCCTCAAAGAGGGCTGGCTGTGGTGGCAGATTCCTTGTGACCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| 3UTR-3UTR TCA 90 bp | CAGTCCAGGCCTCCATGCTGGTGGATAACCTCACCTCCTTTCTGTTTTGTAGTTTGCGGTGGGAGGGGGTaGGGCAGGAATGACAAGCTG | + |
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Preference number: 2 (lower is better) Translates to: QSRPPCWWITSPPFCFVVCGGRG*GRNDKL Trigger: CAGCTTGTCATTCCTGCCTCACCCCCTCCCACCGCA...AACTACAAAACAGAAAGGAGGTGAGGTTATCCACCAGCATGGAGGCCTGGACTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| 3UTR-3UTR GCA 90 bp | CTAGGTGTGGTGGTGCACACCTTAACTCTAGCACTGAGGAGGCTCTCTGTGAGGAGGTCACAAGGAATCTaGCACCACAGCCAGCCCTCT | + |
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Preference number: 2 (lower is better) Translates to: LGVVVHTLTLALRRLSVRRSQGI*HHSQPS Trigger: AGAGGGCTGGCTGTGGTGGCAGATTCCTTGTGACCT...CCTCACAGAGAGCCTCCTCAGTGCTAGAGTTAAGGTGTGCACCACCACACCTAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| 3UTR-3UTR CCA 90 bp | GAATTAGCGAGACCCTGTTTCAAACCAACTCCACCCCACCTTACACACCAAACAGCACTTGACAGAGCCTaGGGTGCGGTGGGAGGGGGT | + |
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Preference number: 2 (lower is better) Translates to: ELARPCFKPTPPHLTHQTALDRA*GAVGGG Trigger: ACCCCCTCCCACCGCACCCCAGGCTCTGTCAAGTGC...TGTTTGGTGTGTAAGGTGGGGTGGAGTTGGTTTGAAACAGGGTCTCGCTAATTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| 3UTR-3UTR GCA 90 bp | CTAGGTGTGGTGGTGCACACCTTAACTCTAGCACTGAGGAGGCTCTCTGTGAGGTCAAGTGAGGGAAAATaGACTGGACCCAGATGGCGG | + |
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Preference number: 2 (lower is better) Translates to: LGVVVHTLTLALRRLSVRSSEGK*TGPRWR Trigger: CCGCCATCTGGGTCCAGTGCATTTTCCCTCACTTGA...CCTCACAGAGAGCCTCCTCAGTGCTAGAGTTAAGGTGTGCACCACCACACCTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| 3UTR-3UTR CCA 90 bp | CAGTCCAGGCCTCCATGCTGGTGGATAACCTCACCTCCTTTCTGTTTTGTAGTTAAAGGAGTGGGTGGGTaGGTTGGGGACCGGGATGAG | + |
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Preference number: 2 (lower is better) Translates to: QSRPPCWWITSPPFCFVVKGVGG*VGDRDE Trigger: CTCATCCCGGTCCCCAACCCACCCACCCACTCCTTT...AACTACAAAACAGAAAGGAGGTGAGGTTATCCACCAGCATGGAGGCCTGGACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| 3UTR-3UTR CCA 90 bp | CAGTCCAGGCCTCCATGCTGGTGGATAACCTCACCTCCTTTCTGTTTTGTAGTTGTAGTCTTCGGTGGCTaGGAAGCCTGGCCTCCCAAC | + |
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Preference number: 2 (lower is better) Translates to: QSRPPCWWITSPPFCFVVVVFGG*EAWPPN Trigger: GTTGGGAGGCCAGGCTTCCCAGCCACCGAAGACTAC...AACTACAAAACAGAAAGGAGGTGAGGTTATCCACCAGCATGGAGGCCTGGACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| 3UTR-3UTR CCA 90 bp | CTAGGTGTGGTGGTGCACACCTTAACTCTAGCACTGAGGAGGCTCTCTGTGAGGGCTGGTAGTCTTGGGTaGAGAAGACGAACTGCACTT | + |
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Preference number: 2 (lower is better) Translates to: LGVVVHTLTLALRRLSVRAGSLG*RRRTAL Trigger: AAGTGCAGTTCGTCTTCTCCACCCAAGACTACCAGC...CCTCACAGAGAGCCTCCTCAGTGCTAGAGTTAAGGTGTGCACCACCACACCTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| 3UTR-3UTR TCA 90 bp | CTAGGTGTGGTGGTGCACACCTTAACTCTAGCACTGAGGAGGCTCTCTGTGAGGACAGCCAGCCCTCTTTaGGGGCAGATTAAATACTTG | + |
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Preference number: 2 (lower is better) Translates to: LGVVVHTLTLALRRLSVRTASPL*GQIKYL Trigger: CAAGTATTTAATCTGCCCTCAAAGAGGGCTGGCTGT...CCTCACAGAGAGCCTCCTCAGTGCTAGAGTTAAGGTGTGCACCACCACACCTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| 3UTR-3UTR CCA 90 bp | GTTTCAAACCAACTCCACCCCACCTTACACACCAAACAATTTAAACAGGGGAAAGTAGTCTTCGGTGGCTaGGAAGCCTGGCCTCCCAAC | + |
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Preference number: 2 (lower is better) Translates to: VSNQLHPTLHTKQFKQGKVVFGG*EAWPPN Trigger: GTTGGGAGGCCAGGCTTCCCAGCCACCGAAGACTAC...TTTCCCCTGTTTAAATTGTTTGGTGTGTAAGGTGGGGTGGAGTTGGTTTGAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| 3UTR-3UTR CCA 90 bp | GTTTCAAACCAACTCCACCCCACCTTACACACCAAACAATTTAAACAGGGGAAAGCTGGTAGTCTTGGGTaGAGAAGACGAACTGCACTT | + |
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Preference number: 2 (lower is better) Translates to: VSNQLHPTLHTKQFKQGKAGSLG*RRRTAL Trigger: AAGTGCAGTTCGTCTTCTCCACCCAAGACTACCAGC...TTTCCCCTGTTTAAATTGTTTGGTGTGTAAGGTGGGGTGGAGTTGGTTTGAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| 3UTR-3UTR CAA 90 bp | CAGGTCACAAGGAATCTGCCACCACAGCCAGCCCTCTTTGAGGGCAGATTAAATGAAGACGAACTGCACTaGACAGAGCCTGGGGTGCGG | + |
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Preference number: 3 (lower is better) Translates to: QVTRNLPPQPALFEGRLNEDELH*TEPGVR Trigger: CCGCACCCCAGGCTCTGTCAAGTGCAGTTCGTCTTC...ATTTAATCTGCCCTCAAAGAGGGCTGGCTGTGGTGGCAGATTCCTTGTGACCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| 3UTR TCA 72 bp | GGTCACAAGGAATCTGCCACCACAGCCAGCCCTCTTTaGGGGCAGATTAAATACTTGATGACAGATAGGGGG | + |
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Preference number: 3 (lower is better) Translates to: GHKESATTASPL*GQIKYLMTDRG Trigger: CCCCCTATCTGTCATCAAGTATTTAATCTGCCCTCAAAGAGGGCTGGCTGTGGTGGCAGATTCCTTGTGACC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| 3UTR-3UTR CAA 90 bp | GTTTCAAACCAACTCCACCCCACCTTACACACCAAACAATTTAAACAGGGGAAAGAAGACGAACTGCACTaGACAGAGCCTGGGGTGCGG | + |
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Preference number: 3 (lower is better) Translates to: VSNQLHPTLHTKQFKQGKEDELH*TEPGVR Trigger: CCGCACCCCAGGCTCTGTCAAGTGCAGTTCGTCTTC...TTTCCCCTGTTTAAATTGTTTGGTGTGTAAGGTGGGGTGGAGTTGGTTTGAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| 3UTR TCA 72 bp | AGGCTCTCTGTGAGGGCTAGCCTGGTTGACATAGTTTaGAGCCAGCTGGAATTAGCGAGACCCTGTTTCAAA | + |
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Preference number: 3 (lower is better) Translates to: RLSVRASLVDIV*SQLELARPCFK Trigger: TTTGAAACAGGGTCTCGCTAATTCCAGCTGGCTTCAAACTATGTCAACCAGGCTAGCCCTCACAGAGAGCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| 3UTR-3UTR CAA 90 bp | GAATTAGCGAGACCCTGTTTCAAACCAACTCCACCCCACCTTACACACCAAACAGGGCAGATTAAATACTaGATGACAGATAGGGGGAAA | + |
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Preference number: 3 (lower is better) Translates to: ELARPCFKPTPPHLTHQTGQIKY*MTDRGK Trigger: TTTCCCCCTATCTGTCATCAAGTATTTAATCTGCCC...TGTTTGGTGTGTAAGGTGGGGTGGAGTTGGTTTGAAACAGGGTCTCGCTAATTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| 3UTR TCA 72 bp | TGGCGGGAAACAAGGTATGACTTACTTACAATTTTGTaGAAATGGGTGGAAGGATTGAGGGACTGTTCAGAA | + |
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Preference number: 3 (lower is better) Translates to: WRETRYDLLTIL*KWVEGLRDCSE Trigger: TTCTGAACAGTCCCTCAATCCTTCCACCCATTTTCACAAAATTGTAAGTAAGTCATACCTTGTTTCCCGCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| CDS-3UTR TCA 90 bp | AAATCCCCAGTCCAGGCCTCCATGCTGGTGGATAACCTCACCTCCTTTCTGTTTCAGCACAGACACACCTaGGCTGGAAGCCTCCACCAA | + |
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Preference number: 4 (lower is better) Translates to: KSPVQASMLVDNLTSFLFQHRHT*AGSLHQ Trigger: TTGGTGGAGGCTTCCAGCTCAGGTGTGTCTGTGCTG...AAACAGAAAGGAGGTGAGGTTATCCACCAGCATGGAGGCCTGGACTGGGGATTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| CDS-3UTR TCA 90 bp | AAATCCCCAGTCCAGGCCTCCATGCTGGTGGATAACCTCACCTCCTTTCTGTTTGGCCTTGCCTTCTCCTaGGCTGACGAGGACATCTAC | + |
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Preference number: 4 (lower is better) Translates to: KSPVQASMLVDNLTSFLFGLAFS*ADEDIY Trigger: GTAGATGTCCTCGTCAGCTCAGGAGAAGGCAAGGCC...AAACAGAAAGGAGGTGAGGTTATCCACCAGCATGGAGGCCTGGACTGGGGATTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| CDS-3UTR TCA 90 bp | GAATTAGCGAGACCCTGTTTCAAACCAACTCCACCCCACCTTACACACCAAACACAGCACAGACACACCTaGGCTGGAAGCCTCCACCAA | + |
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Preference number: 4 (lower is better) Translates to: ELARPCFKPTPPHLTHQTQHRHT*AGSLHQ Trigger: TTGGTGGAGGCTTCCAGCTCAGGTGTGTCTGTGCTG...TGTTTGGTGTGTAAGGTGGGGTGGAGTTGGTTTGAAACAGGGTCTCGCTAATTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| CDS-3UTR TCA 90 bp | GAATTAGCGAGACCCTGTTTCAAACCAACTCCACCCCACCTTACACACCAAACAGGCCTTGCCTTCTCCTaGGCTGACGAGGACATCTAC | + |
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Preference number: 4 (lower is better) Translates to: ELARPCFKPTPPHLTHQTGLAFS*ADEDIY Trigger: GTAGATGTCCTCGTCAGCTCAGGAGAAGGCAAGGCC...TGTTTGGTGTGTAAGGTGGGGTGGAGTTGGTTTGAAACAGGGTCTCGCTAATTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| CDS-3UTR TCA 90 bp | TGCCTAAGCAGGTCACAAGGAATCTGCCACCACAGCCAGCCCTCTTTGAGGGCATCTCCTTTTCCTTCTTaGAGATCTTCCCTGTCTCTT | + |
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Preference number: 4 (lower is better) Translates to: CLSRSQGICHHSQPSLRASPFPS*RSSLSL Trigger: AAGAGACAGGGAAGATCTTCAAGAAGGAAAAGGAGA...TGCCCTCAAAGAGGGCTGGCTGTGGTGGCAGATTCCTTGTGACCTGCTTAGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| CDS-3UTR GCA 90 bp | ACCTTAACTCTAGCACTGAGGAGGCTCTCTGTGAGGGCTAGCCTGGTTGACATAGGCCTTAATGACATCTaGTTTCCGCCCTGTTACCTG | + |
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Preference number: 4 (lower is better) Translates to: TLTLALRRLSVRASLVDIGLNDI*FPPCYL Trigger: CAGGTAACAGGGCGGAAAGCAGATGTCATTAAGGCC...TATGTCAACCAGGCTAGCCCTCACAGAGAGCCTCCTCAGTGCTAGAGTTAAGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| CDS-3UTR GCA 90 bp | CAGGTCACAAGGAATCTGCCACCACAGCCAGCCCTCTTTGAGGGCAGATTAAATGGCCTTAATGACATCTaGTTTCCGCCCTGTTACCTG | + |
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Preference number: 4 (lower is better) Translates to: QVTRNLPPQPALFEGRLNGLNDI*FPPCYL Trigger: CAGGTAACAGGGCGGAAAGCAGATGTCATTAAGGCC...ATTTAATCTGCCCTCAAAGAGGGCTGGCTGTGGTGGCAGATTCCTTGTGACCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| CDS-3UTR TCA 90 bp | CTAGGTGTGGTGGTGCACACCTTAACTCTAGCACTGAGGAGGCTCTCTGTGAGGTCTCCTTTTCCTTCTTaGAGATCTTCCCTGTCTCTT | + |
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Preference number: 4 (lower is better) Translates to: LGVVVHTLTLALRRLSVRSPFPS*RSSLSL Trigger: AAGAGACAGGGAAGATCTTCAAGAAGGAAAAGGAGA...CCTCACAGAGAGCCTCCTCAGTGCTAGAGTTAAGGTGTGCACCACCACACCTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| CDS-3UTR CCA 90 bp | AAATCCCCAGTCCAGGCCTCCATGCTGGTGGATAACCTCACCTCCTTTCTGTTTAGGTTTCTCCACTGGTaGCATTCTCTACAGTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: KSPVQASMLVDNLTSFLFRFLHW*HSLQSW Trigger: CCAAGACTGTAGAGAATGCCACCAGTGGAGAAACCT...AAACAGAAAGGAGGTGAGGTTATCCACCAGCATGGAGGCCTGGACTGGGGATTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| CDS-3UTR CCA 90 bp | AAATCCCCAGTCCAGGCCTCCATGCTGGTGGATAACCTCACCTCCTTTCTGTTTGTAGTAACTCATGTTTaGCACACTCTACCACACCCA | + |
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Preference number: 4 (lower is better) Translates to: KSPVQASMLVDNLTSFLFVVTHV*HTLPHP Trigger: TGGGTGTGGTAGAGTGTGCCAAACATGAGTTACTAC...AAACAGAAAGGAGGTGAGGTTATCCACCAGCATGGAGGCCTGGACTGGGGATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| CDS-3UTR TCA 90 bp | GAATTAGCGAGACCCTGTTTCAAACCAACTCCACCCCACCTTACACACCAAACACCAATTACAAAAGTGTaGGCCACATTGGCAATGAAG | + |
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Preference number: 4 (lower is better) Translates to: ELARPCFKPTPPHLTHQTPITKV*ATLAMK Trigger: CTTCATTGCCAATGTGGCTCACACTTTTGTAATTGG...TGTTTGGTGTGTAAGGTGGGGTGGAGTTGGTTTGAAACAGGGTCTCGCTAATTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| CDS-3UTR CCA 90 bp | GTTTCAAACCAACTCCACCCCACCTTACACACCAAACAATTTAAACAGGGGAAAAGGTTTCTCCACTGGTaGCATTCTCTACAGTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: VSNQLHPTLHTKQFKQGKRFLHW*HSLQSW Trigger: CCAAGACTGTAGAGAATGCCACCAGTGGAGAAACCT...TTTCCCCTGTTTAAATTGTTTGGTGTGTAAGGTGGGGTGGAGTTGGTTTGAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| CDS-3UTR CCA 90 bp | GTTTCAAACCAACTCCACCCCACCTTACACACCAAACAATTTAAACAGGGGAAAGTAGTAACTCATGTTTaGCACACTCTACCACACCCA | + |
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Preference number: 4 (lower is better) Translates to: VSNQLHPTLHTKQFKQGKVVTHV*HTLPHP Trigger: TGGGTGTGGTAGAGTGTGCCAAACATGAGTTACTAC...TTTCCCCTGTTTAAATTGTTTGGTGTGTAAGGTGGGGTGGAGTTGGTTTGAAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| CDS-3UTR CAA 90 bp | TGCCTAAGCAGGTCACAAGGAATCTGCCACCACAGCCAGCCCTCTTTGAGGGCATGTAGTAACTCATGTTaGGCACACTCTACCACACCC | + |
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Preference number: 5 (lower is better) Translates to: CLSRSQGICHHSQPSLRACSNSC*AHSTTP Trigger: GGGTGTGGTAGAGTGTGCCAAACATGAGTTACTACA...TGCCCTCAAAGAGGGCTGGCTGTGGTGGCAGATTCCTTGTGACCTGCTTAGGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| CDS-3UTR CAA 90 bp | CTAGGTGTGGTGGTGCACACCTTAACTCTAGCACTGAGGAGGCTCTCTGTGAGGTGTAGTAACTCATGTTaGGCACACTCTACCACACCC | + |
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Preference number: 5 (lower is better) Translates to: LGVVVHTLTLALRRLSVRCSNSC*AHSTTP Trigger: GGGTGTGGTAGAGTGTGCCAAACATGAGTTACTACA...CCTCACAGAGAGCCTCCTCAGTGCTAGAGTTAAGGTGTGCACCACCACACCTAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| CDS-3UTR CAA 90 bp | CAGGTCACAAGGAATCTGCCACCACAGCCAGCCCTCTTTGAGGGCAGATTAAATATCTCCTTTTCCTTCTaGAAGATCTTCCCTGTCTCT | + |
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Preference number: 5 (lower is better) Translates to: QVTRNLPPQPALFEGRLNISFSF*KIFPVS Trigger: AGAGACAGGGAAGATCTTCAAGAAGGAAAAGGAGAT...ATTTAATCTGCCCTCAAAGAGGGCTGGCTGTGGTGGCAGATTCCTTGTGACCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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| CDS-3UTR CAA 90 bp | AAATCCCCAGTCCAGGCCTCCATGCTGGTGGATAACCTCACCTCCTTTCTGTTTATCTCCTTTTCCTTCTaGAAGATCTTCCCTGTCTCT | + |
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Preference number: 5 (lower is better) Translates to: KSPVQASMLVDNLTSFLFISFSF*KIFPVS Trigger: AGAGACAGGGAAGATCTTCAAGAAGGAAAAGGAGAT...AAACAGAAAGGAGGTGAGGTTATCCACCAGCATGGAGGCCTGGACTGGGGATTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026425.13 ENSMUST00000131728.4 |
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