RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for P4HA3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000051048

Ensembl transcript IDs: ENSMUST00000057023.12, ENSMUST00000138465.3, ENSMUST00000139790.8

Found 199 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTTGCTGGAGGCCTTCCTTCAGGAGGGTCGGCTCCCCTCTGCCCATaGCTTTGGCTCCTGGCTTCTCTGACAAGCTGCCATCTGCCAGTG +
Preference number: 1 (lower is better)
Translates to: LAGGLPSGGSAPLCP*LWLLASLTSCHLPV
Trigger: CACTGGCAGATGGCAGCTTGTCAGAGAAGCCAGGAGCCAAAGCCATGGGCAGAGGGGAGCCGACCCTCCTGAAGGAAGGCCTCCAGCAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR CCA 90 bp AGGGCGTCTTCCAGACTGGCCTCGTCCTCTGTCTTCCACTCGCCGTaGGCTCTCCGGAAGAGACTGACAGCTTCCTCCAGCCATGGGATG +
Preference number: 1 (lower is better)
Translates to: RASSRLASSSVFHSP*ALRKRLTASSSHGM
Trigger: CATCCCATGGCTGGAGGAAGCTGTCAGTCTCTTCCGGAGAGCCCACGGCGAGTGGAAGACAGAGGACGAGGCCAGTCTGGAAGACGCCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR CCA 90 bp TTGGCTGGGAGCCCAGGGTCTGGCATAGCCCCTCGTAGGTGTCCCTaGTCTGCAGGTGGGGTACGTTGGGCCTCTGAATTGCAGTCTCAG +
Preference number: 1 (lower is better)
Translates to: LAGSPGSGIAPRRCP*SAGGVRWASELQSQ
Trigger: CTGAGACTGCAATTCAGAGGCCCAACGTACCCCACCTGCAGACCAGGGACACCTACGAGGGGCTATGCCAGACCCTGGGCTCCCAGCCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR CCA 90 bp GGAGGCCTTCCTTCAGGAGGGTCGGCTCCCCTCTGCCCATGGCTTTaGCTCCTGGCTTCTCTGACAAGCTGCCATCTGCCAGTGTTTCAG +
Preference number: 1 (lower is better)
Translates to: GGLPSGGSAPLCPWL*LLASLTSCHLPVFQ
Trigger: CTGAAACACTGGCAGATGGCAGCTTGTCAGAGAAGCCAGGAGCCAAAGCCATGGGCAGAGGGGAGCCGACCCTCCTGAAGGAAGGCCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR TCA 90 bp CCTCGTCCTCTGTCTTCCACTCGCCGTGGGCTCTCCGGAAGAGACTaGCAGCTTCCTCCAGCCATGGGATGGCATGGTAGTAATCCCCTG +
Preference number: 1 (lower is better)
Translates to: PRPLSSTRRGLSGRD*QLPPAMGWHGSNPL
Trigger: CAGGGGATTACTACCATGCCATCCCATGGCTGGAGGAAGCTGTCAGTCTCTTCCGGAGAGCCCACGGCGAGTGGAAGACAGAGGACGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR TCA 90 bp TTGTTGGCCACCCACTTGTCTCCCACCAGCACAGGACAGCCAGCATaGAGTGTGTCACCATCCCCCTCTCCGCTCCTGTGCAGGTTCCAC +
Preference number: 1 (lower is better)
Translates to: LLATHLSPTSTGQPA*SVSPSPSPLLCRFH
Trigger: GTGGAACCTGCACAGGAGCGGAGAGGGGGATGGTGACACACTTCATGCTGGCTGTCCTGTGCTGGTGGGAGACAAGTGGGTGGCCAACAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR TCA 90 bp GAGGGTCGGCTCCCCTCTGCCCATGGCTTTGGCTCCTGGCTTCTCTaGCAAGCTGCCATCTGCCAGTGTTTCAGTCTTCAGGGTTGGTGC +
Preference number: 1 (lower is better)
Translates to: EGRLPSAHGFGSWLL*QAAICQCFSLQGWC
Trigger: GCACCAACCCTGAAGACTGAAACACTGGCAGATGGCAGCTTGTCAGAGAAGCCAGGAGCCAAAGCCATGGGCAGAGGGGAGCCGACCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR GCA 90 bp GGGCTTCCTAGTAAAGTCCTATCCTTGACTCACAGGCAGCAGCCTTaGTGGAGGCCTTCCTTCAGGAGGGTCGGCTCCCCTCTGCCCATG +
Preference number: 1 (lower is better)
Translates to: GLPSKVLSLTHRQQP*WRPSFRRVGSPLPM
Trigger: CATGGGCAGAGGGGAGCCGACCCTCCTGAAGGAAGGCCTCCAGCAAGGCTGCTGCCTGTGAGTCAAGGATAGGACTTTACTAGGAAGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR GCA 90 bp AAGACGCCTCGAGCCAAGCCCTTCACGTTGAGCATGTACACATCCTaGAGCCGCATCAGGGCCCTTGCTGCTCCCTCGAGGTCCTCAAAG +
Preference number: 1 (lower is better)
Translates to: KTPRAKPFTLSMYTS*SRIRALAAPSRSSK
Trigger: CTTTGAGGACCTCGAGGGAGCAGCAAGGGCCCTGATGCGGCTGCAGGATGTGTACATGCTCAACGTGAAGGGCTTGGCTCGAGGCGTCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR CCA 90 bp TGCCTGGGACTGTACAGGTCGGTGATGGAGGAGCCCGTGACCCTCTaGAAGACGCCTCGAGCCAAGCCCTTCACGTTGAGCATGTACACA +
Preference number: 1 (lower is better)
Translates to: CLGLYRSVMEEPVTL*KTPRAKPFTLSMYT
Trigger: TGTGTACATGCTCAACGTGAAGGGCTTGGCTCGAGGCGTCTTCCAGAGGGTCACGGGCTCCTCCATCACCGACCTGTACAGTCCCAGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR CCA 90 bp CTCGCCGTGGGCTCTCCGGAAGAGACTGACAGCTTCCTCCAGCCATaGGATGGCATGGTAGTAATCCCCTGTGTCATAGGCCACCTTGCC +
Preference number: 1 (lower is better)
Translates to: LAVGSPEETDSFLQP*DGMVVIPCVIGHLA
Trigger: GGCAAGGTGGCCTATGACACAGGGGATTACTACCATGCCATCCCATGGCTGGAGGAAGCTGTCAGTCTCTTCCGGAGAGCCCACGGCGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR TCA 90 bp CCACCTGGAGATACTCTGCGTAGGGAGGCTGGATGTCAAGGCCTGTaGGGGCCGCAATGCGGTGGTCAAGGGTCACCAGCATTGGATCAA +
Preference number: 1 (lower is better)
Translates to: PPGDTLRREAGCQGL*GPQCGGQGSPALDQ
Trigger: TTGATCCAATGCTGGTGACCCTTGACCACCGCATTGCGGCCCTCACAGGCCTTGACATCCAGCCTCCCTACGCAGAGTATCTCCAGGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR GCA 90 bp GTAGGTGTCCCTGGTCTGCAGGTGGGGTACGTTGGGCCTCTGAATTaGAGTCTCAGCCGCCATCTGGTGACCATTCTCAGCCAAGAGCCT +
Preference number: 1 (lower is better)
Translates to: VGVPGLQVGYVGPLN*SLSRHLVTILSQEP
Trigger: AGGCTCTTGGCTGAGAATGGTCACCAGATGGCGGCTGAGACTGCAATTCAGAGGCCCAACGTACCCCACCTGCAGACCAGGGACACCTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR CCA 90 bp CTTCCTAGTAAAGTCCTATCCTTGACTCACAGGCAGCAGCCTTGCTaGAGGCCTTCCTTCAGGAGGGTCGGCTCCCCTCTGCCCATGGCT +
Preference number: 1 (lower is better)
Translates to: LPSKVLSLTHRQQPC*RPSFRRVGSPLPMA
Trigger: AGCCATGGGCAGAGGGGAGCCGACCCTCCTGAAGGAAGGCCTCCAGCAAGGCTGCTGCCTGTGAGTCAAGGATAGGACTTTACTAGGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR GCA 90 bp CACGTTGAGCATGTACACATCCTGCAGCCGCATCAGGGCCCTTGCTaGTCCCTCGAGGTCCTCAAAGGCAGGAAGGTCTTGCTCTACCTT +
Preference number: 1 (lower is better)
Translates to: HVEHVHILQPHQGPC*SLEVLKGRKVLLYL
Trigger: AAGGTAGAGCAAGACCTTCCTGCCTTTGAGGACCTCGAGGGAGCAGCAAGGGCCCTGATGCGGCTGCAGGATGTGTACATGCTCAACGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR GCA 90 bp CTTCACGTTGAGCATGTACACATCCTGCAGCCGCATCAGGGCCCTTaGTGCTCCCTCGAGGTCCTCAAAGGCAGGAAGGTCTTGCTCTAC +
Preference number: 1 (lower is better)
Translates to: LHVEHVHILQPHQGP*CSLEVLKGRKVLLY
Trigger: GTAGAGCAAGACCTTCCTGCCTTTGAGGACCTCGAGGGAGCAGCAAGGGCCCTGATGCGGCTGCAGGATGTGTACATGCTCAACGTGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR GCA 90 bp CTCATAGTGCCCTCCGATTCCATAGTTCACCACCTGGAGATACTCTaGGTAGGGAGGCTGGATGTCAAGGCCTGTGAGGGCCGCAATGCG +
Preference number: 1 (lower is better)
Translates to: LIVPSDSIVHHLEIL*VGRLDVKACEGRNA
Trigger: CGCATTGCGGCCCTCACAGGCCTTGACATCCAGCCTCCCTACGCAGAGTATCTCCAGGTGGTGAACTATGGAATCGGAGGGCACTATGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR CCA 90 bp GCAGTAGGTAGGGGCTGGAATTGGTCTCATAGGAGCAGTAGAGGCTaGGGATTTGGTAGTGTGTTGGCTGGGAGCCCAGGGTCTGGCATA +
Preference number: 1 (lower is better)
Translates to: AVGRGWNWSHRSSRG*GFGSVLAGSPGSGI
Trigger: TATGCCAGACCCTGGGCTCCCAGCCAACACACTACCAAATCCCCAGCCTCTACTGCTCCTATGAGACCAATTCCAGCCCCTACCTACTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR CCA 90 bp GGTGGACAACCTCCTTTCGGGCAGGCTGGAGCAGTAGGTAGGGGCTaGAATTGGTCTCATAGGAGCAGTAGAGGCTGGGGATTTGGTAGT +
Preference number: 1 (lower is better)
Translates to: GGQPPFGQAGAVGRG*NWSHRSSRGWGFGS
Trigger: ACTACCAAATCCCCAGCCTCTACTGCTCCTATGAGACCAATTCCAGCCCCTACCTACTGCTCCAGCCTGCCCGAAAGGAGGTTGTCCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR CCA 90 bp TCAGGGTTGGTGCTGCAGGGTCTTCGGAATTCCTGTCCATACTCGTaGATCCACTTGTTGGCCACCCACTTGTCTCCCACCAGCACAGGA +
Preference number: 1 (lower is better)
Translates to: SGLVLQGLRNSCPYS*IHLLATHLSPTSTG
Trigger: TCCTGTGCTGGTGGGAGACAAGTGGGTGGCCAACAAGTGGATCCACGAGTATGGACAGGAATTCCGAAGACCCTGCAGCACCAACCCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR TCA 90 bp ATGCAAATTTGGGGGATAGGGGGCTTCCTAGTAAAGTCCTATCCTTaGCTCACAGGCAGCAGCCTTGCTGGAGGCCTTCCTTCAGGAGGG +
Preference number: 1 (lower is better)
Translates to: MQIWGIGGFLVKSYP*LTGSSLAGGLPSGG
Trigger: CCCTCCTGAAGGAAGGCCTCCAGCAAGGCTGCTGCCTGTGAGTCAAGGATAGGACTTTACTAGGAAGCCCCCTATCCCCCAAATTTGCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR TCA 90 bp TCCTCTTATTGTCTGGGCTGTAGACAAGGAACTCTCGAGAGAGGCTaGGGGCACATGAAACATTTCCTACCTGGAAACAGGCAAAGGCCA +
Preference number: 1 (lower is better)
Translates to: SSYCLGCRQGTLERG*GHMKHFLPGNRQRP
Trigger: TGGCCTTTGCCTGTTTCCAGGTAGGAAATGTTTCATGTGCCCTCAGCCTCTCTCGAGAGTTCCTTGTCTACAGCCCAGACAATAAGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR GCA 90 bp TTCTCAGTGGCCTCCAGACTATGTACCACATTCCTCCAGTCGGACTaGAGACGTTTGATGAGAGTGAAGGCAAGTAGAGGATTCACTACA +
Preference number: 1 (lower is better)
Translates to: FSVASRLCTTFLQSD*RRLMRVKASRGFTT
Trigger: TGTAGTGAATCCTCTACTTGCCTTCACTCTCATCAAACGTCTGCAGTCCGACTGGAGGAATGTGGTACATAGTCTGGAGGCCACTGAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR CCA 90 bp GGGCAGCAGCAGAAATCAGCCCCATTATTGTTTGCAGTGTGTGTGTaGGTATATGAGGATGGGTGTATGGATGTGTGTGTGTGTGCTTGT +
Preference number: 1 (lower is better)
Translates to: GQQQKSAPLLFAVCV*VYEDGCMDVCVCAC
Trigger: ACAAGCACACACACACACATCCATACACCCATCCTCATATACCCACACACACACTGCAAACAATAATGGGGCTGATTTCTGCTGCTGCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR GCA 90 bp CTGAGTTTCTACACTGAGCTCAATCCTTTTATTCCTAAGGACATCTaGGCCCTCTTAGGCCTCTTCGTCTTGTCCATTCGACTCTTAAGT +
Preference number: 1 (lower is better)
Translates to: LSFYTELNPFIPKDI*ALLGLFVLSIRLLS
Trigger: ACTTAAGAGTCGAATGGACAAGACGAAGAGGCCTAAGAGGGCGCAGATGTCCTTAGGAATAAAAGGATTGAGCTCAGTGTAGAAACTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR-3UTR GCA 90 bp CAGGCAGCAGCCTTGCTGGAGGCCTTCCTTCAGGAGGGTCGGCTCCCCTCTGCCCACAGGCAGCAGCCTTaGTGGAGGCCTTCCTTCAGG +
Preference number: 2 (lower is better)
Translates to: QAAALLEAFLQEGRLPSAHRQQP*WRPSFR
Trigger: CCTGAAGGAAGGCCTCCAGCAAGGCTGCTGCCTGTG...GGCAGAGGGGAGCCGACCCTCCTGAAGGAAGGCCTCCAGCAAGGCTGCTGCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR-3UTR CCA 90 bp CAGGCAGCAGCCTTGCTGGAGGCCTTCCTTCAGGAGGGTCGGCTCCCCTCTGCCGCTCCCCTCTGCCCATaGCTTTGGCTCCTGGCTTCT +
Preference number: 2 (lower is better)
Translates to: QAAALLEAFLQEGRLPSAAPLCP*LWLLAS
Trigger: AGAAGCCAGGAGCCAAAGCCATGGGCAGAGGGGAGC...GGCAGAGGGGAGCCGACCCTCCTGAAGGAAGGCCTCCAGCAAGGCTGCTGCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR-3UTR TCA 90 bp CAGGCAGCAGCCTTGCTGGAGGCCTTCCTTCAGGAGGGTCGGCTCCCCTCTGCCCTCTCCGGAAGAGACTaGCAGCTTCCTCCAGCCATG +
Preference number: 2 (lower is better)
Translates to: QAAALLEAFLQEGRLPSALSGRD*QLPPAM
Trigger: CATGGCTGGAGGAAGCTGTCAGTCTCTTCCGGAGAG...GGCAGAGGGGAGCCGACCCTCCTGAAGGAAGGCCTCCAGCAAGGCTGCTGCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR GCA 90 bp GGATGGGGATGGAGGCCTCTGGGTCAGACACTCCTCCTGGGGCAGCAGCAGAAAGGGTCGGCTCCCCTCTaGCCATGGCTTTGGCTCCTG +
Preference number: 2 (lower is better)
Translates to: GWGWRPLGQTLLLGQQQKGSAPL*PWLWLL
Trigger: CAGGAGCCAAAGCCATGGGCAGAGGGGAGCCGACCC...TTTCTGCTGCTGCCCCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCCATCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR-3UTR GCA 90 bp CTTCCAGACTGGCCTCGTCCTCTGTCTTCCACTCGCCGTGGGCTCTCCGGAAGACCGCATCAGGGCCCTTaGTGCTCCCTCGAGGTCCTC +
Preference number: 2 (lower is better)
Translates to: LPDWPRPLSSTRRGLSGRPHQGP*CSLEVL
Trigger: GAGGACCTCGAGGGAGCAGCAAGGGCCCTGATGCGG...TCTTCCGGAGAGCCCACGGCGAGTGGAAGACAGAGGACGAGGCCAGTCTGGAAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR CCA 90 bp GGGATGGGGATGGAGGCCTCTGGGTCAGACACTCCTCCTGGGGCAGCAGCAGAAGCTCCCCTCTGCCCATaGCTTTGGCTCCTGGCTTCT +
Preference number: 2 (lower is better)
Translates to: GMGMEASGSDTPPGAAAEAPLCP*LWLLAS
Trigger: AGAAGCCAGGAGCCAAAGCCATGGGCAGAGGGGAGC...TTCTGCTGCTGCCCCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCCATCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR-3UTR CCA 90 bp CCTTCCTTCAGGAGGGTCGGCTCCCCTCTGCCCATGGCTTTGGCTCCTGGCTTCTATCCCCACTGGGGATaGGGATGGAGGCCTCTGGGT +
Preference number: 2 (lower is better)
Translates to: PSFRRVGSPLPMALAPGFYPHWG*GWRPLG
Trigger: ACCCAGAGGCCTCCATCCCCATCCCCAGTGGGGATA...GAAGCCAGGAGCCAAAGCCATGGGCAGAGGGGAGCCGACCCTCCTGAAGGAAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR-3UTR CCA 90 bp GGGATGGGGATGGAGGCCTCTGGGTCAGACACTCCTCCTGGGGCAGCAGCAGAAGTCTTCCACTCGCCGTaGGCTCTCCGGAAGAGACTG +
Preference number: 2 (lower is better)
Translates to: GMGMEASGSDTPPGAAAEVFHSP*ALRKRL
Trigger: CAGTCTCTTCCGGAGAGCCCACGGCGAGTGGAAGAC...TTCTGCTGCTGCCCCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCCATCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR CAA 90 bp GAGCCCGTGACCCTCTGGAAGACGCCTCGAGCCAAGCCCTTCACGTaGAGCATGTACACATCCTGCAGCCGCATCAGGGCCCTTGCTGCT +
Preference number: 2 (lower is better)
Translates to: EPVTLWKTPRAKPFT*SMYTSCSRIRALAA
Trigger: AGCAGCAAGGGCCCTGATGCGGCTGCAGGATGTGTACATGCTCAACGTGAAGGGCTTGGCTCGAGGCGTCTTCCAGAGGGTCACGGGCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR CCA 90 bp GGATGGGGATGGAGGCCTCTGGGTCAGACACTCCTCCTGGGGCAGCAGCAGAAAGCTCCCCTCTGCCCATaGCTTTGGCTCCTGGCTTCT +
Preference number: 2 (lower is better)
Translates to: GWGWRPLGQTLLLGQQQKAPLCP*LWLLAS
Trigger: AGAAGCCAGGAGCCAAAGCCATGGGCAGAGGGGAGC...TTTCTGCTGCTGCCCCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCCATCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR-3UTR CCA 90 bp GGATGGGGATGGAGGCCTCTGGGTCAGACACTCCTCCTGGGGCAGCAGCAGAAAAGGCAGCAGCCTTGCTaGAGGCCTTCCTTCAGGAGG +
Preference number: 2 (lower is better)
Translates to: GWGWRPLGQTLLLGQQQKRQQPC*RPSFRR
Trigger: CCTCCTGAAGGAAGGCCTCCAGCAAGGCTGCTGCCT...TTTCTGCTGCTGCCCCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCCATCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR-3UTR CCA 90 bp TGGATCCACTTGTTGGCCACCCACTTGTCTCCCACCAGCACAGGACAGCCAGCAGGGGATGGAGGCCTCTaGGTCAGACACTCCTCCTGG +
Preference number: 2 (lower is better)
Translates to: WIHLLATHLSPTSTGQPAGDGGL*VRHSSW
Trigger: CCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCC...TGCTGGCTGTCCTGTGCTGGTGGGAGACAAGTGGGTGGCCAACAAGTGGATCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR CAA 90 bp TGGAGGCCTTCCTTCAGGAGGGTCGGCTCCCCTCTGCCCATGGCTTaGGCTCCTGGCTTCTCTGACAAGCTGCCATCTGCCAGTGTTTCA +
Preference number: 2 (lower is better)
Translates to: WRPSFRRVGSPLPMA*APGFSDKLPSASVS
Trigger: TGAAACACTGGCAGATGGCAGCTTGTCAGAGAAGCCAGGAGCCAAAGCCATGGGCAGAGGGGAGCCGACCCTCCTGAAGGAAGGCCTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR GCA 90 bp CCTTCCTTCAGGAGGGTCGGCTCCCCTCTGCCCATGGCTTTGGCTCCTGGCTTCCTTCAGGGTTGGTGCTaGAGGGTCTTCGGAATTCCT +
Preference number: 2 (lower is better)
Translates to: PSFRRVGSPLPMALAPGFLQGWC*RVFGIP
Trigger: AGGAATTCCGAAGACCCTGCAGCACCAACCCTGAAG...GAAGCCAGGAGCCAAAGCCATGGGCAGAGGGGAGCCGACCCTCCTGAAGGAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR CCA 90 bp TGGATCCACTTGTTGGCCACCCACTTGTCTCCCACCAGCACAGGACAGCCAGCACACTGGGGATGGGGATaGAGGCCTCTGGGTCAGACA +
Preference number: 2 (lower is better)
Translates to: WIHLLATHLSPTSTGQPAHWGWG*RPLGQT
Trigger: TGTCTGACCCAGAGGCCTCCATCCCCATCCCCAGTG...TGCTGGCTGTCCTGTGCTGGTGGGAGACAAGTGGGTGGCCAACAAGTGGATCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR TCA 90 bp GATGTCAAGGCCTGTGAGGGCCGCAATGCGGTGGTCAAGGGTCACCAGCATTGGGCCAGGCACTTTTGCTaGTGCGGTACTCCACTTGCA +
Preference number: 2 (lower is better)
Translates to: DVKACEGRNAVVKGHQHWARHFC*CGTPLA
Trigger: TGCAAGTGGAGTACCGCATCAGCAAAAGTGCCTGGC...CCAATGCTGGTGACCCTTGACCACCGCATTGCGGCCCTCACAGGCCTTGACATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR CCA 90 bp TGGGGATGGAGGCCTCTGGGTCAGACACTCCTCCTGGGGCAGCAGCAGAAATCACTCTGCCCATGGCTTTaGCTCCTGGCTTCTCTGACA +
Preference number: 2 (lower is better)
Translates to: WGWRPLGQTLLLGQQQKSLCPWL*LLASLT
Trigger: TGTCAGAGAAGCCAGGAGCCAAAGCCATGGGCAGAG...TGATTTCTGCTGCTGCCCCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR-3UTR TCA 90 bp GGGCCGCAATGCGGTGGTCAAGGGTCACCAGCATTGGATCAACCGTGTCCTTTATCAGCCGCCATCTGGTaGCCATTCTCAGCCAAGAGC +
Preference number: 2 (lower is better)
Translates to: GPQCGGQGSPALDQPCPLSAAIW*PFSAKS
Trigger: GCTCTTGGCTGAGAATGGTCACCAGATGGCGGCTGA...TAAAGGACACGGTTGATCCAATGCTGGTGACCCTTGACCACCGCATTGCGGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR GCA 90 bp TTCGGAATTCCTGTCCATACTCGTGGATCCACTTGTTGGCCACCCACTTGTCTCGGGTCGGCTCCCCTCTaGCCATGGCTTTGGCTCCTG +
Preference number: 2 (lower is better)
Translates to: FGIPVHTRGSTCWPPTCLGSAPL*PWLWLL
Trigger: CAGGAGCCAAAGCCATGGGCAGAGGGGAGCCGACCC...GAGACAAGTGGGTGGCCAACAAGTGGATCCACGAGTATGGACAGGAATTCCGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR CCA 90 bp TGGATCCACTTGTTGGCCACCCACTTGTCTCCCACCAGCACAGGACAGCCAGCACCTCCAGCCATGGGATaGCATGGTAGTAATCCCCTG +
Preference number: 2 (lower is better)
Translates to: WIHLLATHLSPTSTGQPAPPAMG*HGSNPL
Trigger: CAGGGGATTACTACCATGCCATCCCATGGCTGGAGG...TGCTGGCTGTCCTGTGCTGGTGGGAGACAAGTGGGTGGCCAACAAGTGGATCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR CAA 90 bp CAGGGCCCTTGCTGCTCCCTCGAGGTCCTCAAAGGCAGGAAGGTCTaGCTCTACCTTCTCATAGCCATCCTTCAGAGCTCGGATGTTCTC +
Preference number: 2 (lower is better)
Translates to: QGPCCSLEVLKGRKV*LYLLIAILQSSDVL
Trigger: GAGAACATCCGAGCTCTGAAGGATGGCTATGAGAAGGTAGAGCAAGACCTTCCTGCCTTTGAGGACCTCGAGGGAGCAGCAAGGGCCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR GCA 90 bp GATGGGGATGGAGGCCTCTGGGTCAGACACTCCTCCTGGGGCAGCAGCAGAAATTTCCTCCAGTCGGACTaGAGACGTTTGATGAGAGTG +
Preference number: 2 (lower is better)
Translates to: DGDGGLWVRHSSWGSSRNFLQSD*RRLMRV
Trigger: CACTCTCATCAAACGTCTGCAGTCCGACTGGAGGAA...ATTTCTGCTGCTGCCCCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR GCA 90 bp TCCACTTGTTGGCCACCCACTTGTCTCCCACCAGCACAGGACAGCCAGCATGAAGTGAGAGAGAAGAGCTaGCTGGGACTGTACAGGTCG +
Preference number: 2 (lower is better)
Translates to: STCWPPTCLPPAQDSQHEVREKS*LGLYRS
Trigger: CGACCTGTACAGTCCCAGGCAGCTCTTCTCTCTCAC...TTCATGCTGGCTGTCCTGTGCTGGTGGGAGACAAGTGGGTGGCCAACAAGTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR CCA 90 bp GGGCCGCAATGCGGTGGTCAAGGGTCACCAGCATTGGATCAACCGTGTCCTTTACTCTGCCCATGGCTTTaGCTCCTGGCTTCTCTGACA +
Preference number: 2 (lower is better)
Translates to: GPQCGGQGSPALDQPCPLLCPWL*LLASLT
Trigger: TGTCAGAGAAGCCAGGAGCCAAAGCCATGGGCAGAG...TAAAGGACACGGTTGATCCAATGCTGGTGACCCTTGACCACCGCATTGCGGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR CCA 90 bp GGGATGGGGATGGAGGCCTCTGGGTCAGACACTCCTCCTGGGGCAGCAGCAGAAATGAGGATGGGTGTATaGATGTGTGTGTGTGTGCTT +
Preference number: 2 (lower is better)
Translates to: GMGMEASGSDTPPGAAAEMRMGV*MCVCVL
Trigger: AAGCACACACACACACATCCATACACCCATCCTCAT...TTCTGCTGCTGCCCCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCCATCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR-3UTR CCA 90 bp GCCCTCTTAGGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGAGGGGATGGAGGCCTCTaGGTCAGACACTCCTCCTGG +
Preference number: 2 (lower is better)
Translates to: ALLGLFVLSIRLLSLTAGGDGGL*VRHSSW
Trigger: CCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCC...TCCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCCTAAGAGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR-3UTR CCA 90 bp CCTTCCTTCAGGAGGGTCGGCTCCCCTCTGCCCATGGCTTTGGCTCCTGGCTTCGAAACATTTCCTACCTaGAAACAGGCAAAGGCCAAG +
Preference number: 2 (lower is better)
Translates to: PSFRRVGSPLPMALAPGFETFPT*KQAKAK
Trigger: CTTGGCCTTTGCCTGTTTCCAGGTAGGAAATGTTTC...GAAGCCAGGAGCCAAAGCCATGGGCAGAGGGGAGCCGACCCTCCTGAAGGAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR CCA 90 bp CCTGTGAGGGCCGCAATGCGGTGGTCAAGGGTCACCAGCATTGGATCAACCGTGAGGAGCAGTAGAGGCTaGGGATTTGGTAGTGTGTTG +
Preference number: 2 (lower is better)
Translates to: PVRAAMRWSRVTSIGSTVRSSRG*GFGSVL
Trigger: CAACACACTACCAAATCCCCAGCCTCTACTGCTCCT...CACGGTTGATCCAATGCTGGTGACCCTTGACCACCGCATTGCGGCCCTCACAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR GCA 90 bp CCTTTTATTCCTAAGGACATCTGCGCCCTCTTAGGCCTCTTCGTCTTGTCCATTGGGTCGGCTCCCCTCTaGCCATGGCTTTGGCTCCTG +
Preference number: 2 (lower is better)
Translates to: PFIPKDICALLGLFVLSIGSAPL*PWLWLL
Trigger: CAGGAGCCAAAGCCATGGGCAGAGGGGAGCCGACCC...AATGGACAAGACGAAGAGGCCTAAGAGGGCGCAGATGTCCTTAGGAATAAAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR-3UTR CCA 90 bp ATGGGATGGCATGGTAGTAATCCCCTGTGTCATAGGCCACCTTGCCAACTTGGAAGGCAGCAGCCTTGCTaGAGGCCTTCCTTCAGGAGG +
Preference number: 2 (lower is better)
Translates to: MGWHGSNPLCHRPPCQLGRQQPC*RPSFRR
Trigger: CCTCCTGAAGGAAGGCCTCCAGCAAGGCTGCTGCCT...TCCAAGTTGGCAAGGTGGCCTATGACACAGGGGATTACTACCATGCCATCCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR CCA 90 bp GCCCTCTTAGGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGACACTGGGGATGGGGATaGAGGCCTCTGGGTCAGACA +
Preference number: 2 (lower is better)
Translates to: ALLGLFVLSIRLLSLTAGHWGWG*RPLGQT
Trigger: TGTCTGACCCAGAGGCCTCCATCCCCATCCCCAGTG...TCCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCCTAAGAGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR-3UTR CCA 90 bp ATCAGGGCCCTTGCTGCTCCCTCGAGGTCCTCAAAGGCAGGAAGGTCTTGCTCTCTCGGATGTTCTCAGTaGCCTCCAGACTATGTACCA +
Preference number: 2 (lower is better)
Translates to: IRALAAPSRSSKAGRSCSLGCSQ*PPDYVP
Trigger: TGGTACATAGTCTGGAGGCCACTGAGAACATCCGAG...AGAGCAAGACCTTCCTGCCTTTGAGGACCTCGAGGGAGCAGCAAGGGCCCTGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR CCA 90 bp GCAATGCGGTGGTCAAGGGTCACCAGCATTGGATCAACCGTGTCCTTTAGCCAGGCCACCTTGCCAACTTaGAAGCAGTCATCCGCTGTG +
Preference number: 2 (lower is better)
Translates to: AMRWSRVTSIGSTVSFSQATLPT*KQSSAV
Trigger: CACAGCGGATGACTGCTTCCAAGTTGGCAAGGTGGC...CTGGCTAAAGGACACGGTTGATCCAATGCTGGTGACCCTTGACCACCGCATTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR CAA 90 bp GATGCAAATTTGGGGGATAGGGGGCTTCCTAGTAAAGTCCTATCCTaGACTCACAGGCAGCAGCCTTGCTGGAGGCCTTCCTTCAGGAGG +
Preference number: 2 (lower is better)
Translates to: DANLGDRGLPSKVLS*THRQQPCWRPSFRR
Trigger: CCTCCTGAAGGAAGGCCTCCAGCAAGGCTGCTGCCTGTGAGTCAAGGATAGGACTTTACTAGGAAGCCCCCTATCCCCCAAATTTGCATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR-3UTR CCA 90 bp TGGGGATGGAGGCCTCTGGGTCAGACACTCCTCCTGGGGCAGCAGCAGAAATCAATGAGGATGGGTGTATaGATGTGTGTGTGTGTGCTT +
Preference number: 2 (lower is better)
Translates to: WGWRPLGQTLLLGQQQKSMRMGV*MCVCVL
Trigger: AAGCACACACACACACATCCATACACCCATCCTCAT...TGATTTCTGCTGCTGCCCCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR CAA 90 bp GCTTCTCTGACAAGCTGCCATCTGCCAGTGTTTCAGTCTTCAGGGTaGGTGCTGCAGGGTCTTCGGAATTCCTGTCCATACTCGTGGATC +
Preference number: 2 (lower is better)
Translates to: ASLTSCHLPVFQSSG*VLQGLRNSCPYSWI
Trigger: GATCCACGAGTATGGACAGGAATTCCGAAGACCCTGCAGCACCAACCCTGAAGACTGAAACACTGGCAGATGGCAGCTTGTCAGAGAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR GCA 90 bp GGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGAGTAGAAACACACAGGCAGCAGCCTTaGTGGAGGCCTTCCTTCAGG +
Preference number: 2 (lower is better)
Translates to: GLFVLSIRLLSLTAGVETHRQQP*WRPSFR
Trigger: CCTGAAGGAAGGCCTCCAGCAAGGCTGCTGCCTGTG...TGTTTCTACTCCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR-3UTR GCA 90 bp GATGGGGATGGAGGCCTCTGGGTCAGACACTCCTCCTGGGGCAGCAGCAGAAATAGCCCCATTATTGTTTaGAGTGTGTGTGTGGGTATA +
Preference number: 2 (lower is better)
Translates to: DGDGGLWVRHSSWGSSRNSPIIV*SVCVGI
Trigger: TATACCCACACACACACTGCAAACAATAATGGGGCT...ATTTCTGCTGCTGCCCCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR-3UTR CCA 90 bp GGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGAGTAGAAACAAGGCAGCAGCCTTGCTaGAGGCCTTCCTTCAGGAGG +
Preference number: 2 (lower is better)
Translates to: GLFVLSIRLLSLTAGVETRQQPC*RPSFRR
Trigger: CCTCCTGAAGGAAGGCCTCCAGCAAGGCTGCTGCCT...TGTTTCTACTCCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR-3UTR CCA 90 bp GGATGGGGATGGAGGCCTCTGGGTCAGACACTCCTCCTGGGGCAGCAGCAGAAACTTAAGTCTCACAGCTaGAGTAGAAACAGATGCAAA +
Preference number: 2 (lower is better)
Translates to: GWGWRPLGQTLLLGQQQKLKSHS*SRNRCK
Trigger: TTTGCATCTGTTTCTACTCCAGCTGTGAGACTTAAG...TTTCTGCTGCTGCCCCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCCATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR-3UTR GCA 90 bp TTCGGAATTCCTGTCCATACTCGTGGATCCACTTGTTGGCCACCCACTTGTCTCTACTCCACTTGCAACTaGTTTTCCCCCGAAGCCACC +
Preference number: 2 (lower is better)
Translates to: FGIPVHTRGSTCWPPTCLYSTCN*FSPEAT
Trigger: GGTGGCTTCGGGGGAAAAGCAGTTGCAAGTGGAGTA...GAGACAAGTGGGTGGCCAACAAGTGGATCCACGAGTATGGACAGGAATTCCGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR CAA 90 bp GGTCAGACACTCCTCCTGGGGCAGCAGCAGAAATCAGCCCCATTATaGTTTGCAGTGTGTGTGTGGGTATATGAGGATGGGTGTATGGAT +
Preference number: 2 (lower is better)
Translates to: GQTLLLGQQQKSAPL*FAVCVWVYEDGCMD
Trigger: ATCCATACACCCATCCTCATATACCCACACACACACTGCAAACAATAATGGGGCTGATTTCTGCTGCTGCCCCAGGAGGAGTGTCTGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR CAA 90 bp GCCTCCAGACTATGTACCACATTCCTCCAGTCGGACTGCAGACGTTaGATGAGAGTGAAGGCAAGTAGAGGATTCACTACAGGGATCTTC +
Preference number: 2 (lower is better)
Translates to: ASRLCTTFLQSDCRR*MRVKASRGFTTGIF
Trigger: GAAGATCCCTGTAGTGAATCCTCTACTTGCCTTCACTCTCATCAAACGTCTGCAGTCCGACTGGAGGAATGTGGTACATAGTCTGGAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR TCA 90 bp ATAGTGCCCTCCGATTCCATAGTTCACCACCTGGAGATACTCTGCGTAGGGAGGGCACATTCTAAACCCTaGGTTTCTACACTGAGCTCA +
Preference number: 2 (lower is better)
Translates to: IVPSDSIVHHLEILCVGRAHSKP*VSTLSS
Trigger: TGAGCTCAGTGTAGAAACTCAGGGTTTAGAATGTGC...CCTCCCTACGCAGAGTATCTCCAGGTGGTGAACTATGGAATCGGAGGGCACTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR CCA 90 bp TCCACTTGTTGGCCACCCACTTGTCTCCCACCAGCACAGGACAGCCAGCATGAACTTAAGTCTCACAGCTaGAGTAGAAACAGATGCAAA +
Preference number: 2 (lower is better)
Translates to: STCWPPTCLPPAQDSQHELKSHS*SRNRCK
Trigger: TTTGCATCTGTTTCTACTCCAGCTGTGAGACTTAAG...TTCATGCTGGCTGTCCTGTGCTGGTGGGAGACAAGTGGGTGGCCAACAAGTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR GCA 90 bp TGGAATTGGTCTCATAGGAGCAGTAGAGGCTGGGGATTTGGTAGTGTGTTGGCTTGTCATAGGCCACCTTaGCAACTTGGAAGCAGTCAT +
Preference number: 2 (lower is better)
Translates to: WNWSHRSSRGWGFGSVLACHRPP*QLGSSH
Trigger: ATGACTGCTTCCAAGTTGGCAAGGTGGCCTATGACA...AGCCAACACACTACCAAATCCCCAGCCTCTACTGCTCCTATGAGACCAATTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR CAA 90 bp CCTTTTATTCCTAAGGACATCTGCGCCCTCTTAGGCCTCTTCGTCTaGTCCATTCGACTCTTAAGTCTCACAGCTGGAGTAGAAACAGAT +
Preference number: 2 (lower is better)
Translates to: PFIPKDICALLGLFV*SIRLLSLTAGVETD
Trigger: ATCTGTTTCTACTCCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCCTAAGAGGGCGCAGATGTCCTTAGGAATAAAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR-3UTR CCA 90 bp GCCCTCTTAGGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGACTTAAGTCTCACAGCTaGAGTAGAAACAGATGCAAA +
Preference number: 2 (lower is better)
Translates to: ALLGLFVLSIRLLSLTAGLKSHS*SRNRCK
Trigger: TTTGCATCTGTTTCTACTCCAGCTGTGAGACTTAAG...TCCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCCTAAGAGGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR CAA 90 bp ATTCGACTCTTAAGTCTCACAGCTGGAGTAGAAACAGATGCAAATTaGGGGGATAGGGGGCTTCCTAGTAAAGTCCTATCCTTGACTCAC +
Preference number: 2 (lower is better)
Translates to: IRLLSLTAGVETDAN*GDRGLPSKVLSLTH
Trigger: GTGAGTCAAGGATAGGACTTTACTAGGAAGCCCCCTATCCCCCAAATTTGCATCTGTTTCTACTCCAGCTGTGAGACTTAAGAGTCGAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR-3UTR GCA 90 bp GGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGAGTAGAAACAATCTTCAAGTCCTCGTaGAAAGAAAGTACCTTGTCA +
Preference number: 2 (lower is better)
Translates to: GLFVLSIRLLSLTAGVETIFKSS*KESTLS
Trigger: TGACAAGGTACTTTCTTTGCACGAGGACTTGAAGAT...TGTTTCTACTCCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR CAA 90 bp GCCTCGTCCTCTGTCTTCCACTCGCCGTGGGCTCTCCGGAAGAGACTGACAGCTGCCGCATCAGGGCCCTaGCTGCTCCCTCGAGGTCCT +
Preference number: 3 (lower is better)
Translates to: ASSSVFHSPWALRKRLTAAASGP*LLPRGP
Trigger: AGGACCTCGAGGGAGCAGCAAGGGCCCTGATGCGGC...AGCTGTCAGTCTCTTCCGGAGAGCCCACGGCGAGTGGAAGACAGAGGACGAGGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR TCA 72 bp CCCTCTGGAAGACGCCTCGAGCCAAGCCCTTCACGTTaGGCATGTACACATCCTGCAGCCGCATCAGGGCCC +
Preference number: 3 (lower is better)
Translates to: PSGRRLEPSPSR*ACTHPAAASGP
Trigger: GGGCCCTGATGCGGCTGCAGGATGTGTACATGCTCAACGTGAAGGGCTTGGCTCGAGGCGTCTTCCAGAGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR GCA 72 bp CGAGCCAAGCCCTTCACGTTGAGCATGTACACATCCTaGAGCCGCATCAGGGCCCTTGCTGCTCCCTCGAGG +
Preference number: 3 (lower is better)
Translates to: RAKPFTLSMYTS*SRIRALAAPSR
Trigger: CCTCGAGGGAGCAGCAAGGGCCCTGATGCGGCTGCAGGATGTGTACATGCTCAACGTGAAGGGCTTGGCTCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR CCA 72 bp CTGTACAGGTCGGTGATGGAGGAGCCCGTGACCCTCTaGAAGACGCCTCGAGCCAAGCCCTTCACGTTGAGC +
Preference number: 3 (lower is better)
Translates to: LYRSVMEEPVTL*KTPRAKPFTLS
Trigger: GCTCAACGTGAAGGGCTTGGCTCGAGGCGTCTTCCAGAGGGTCACGGGCTCCTCCATCACCGACCTGTACAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR CCA 72 bp TCCAGACTGGCCTCGTCCTCTGTCTTCCACTCGCCGTaGGCTCTCCGGAAGAGACTGACAGCTTCCTCCAGC +
Preference number: 3 (lower is better)
Translates to: SRLASSSVFHSP*ALRKRLTASSS
Trigger: GCTGGAGGAAGCTGTCAGTCTCTTCCGGAGAGCCCACGGCGAGTGGAAGACAGAGGACGAGGCCAGTCTGGA
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR CAA 90 bp GATGGGGATGGAGGCCTCTGGGTCAGACACTCCTCCTGGGGCAGCAGCAGAAATCCTCTGCCCATGGCTTaGGCTCCTGGCTTCTCTGAC +
Preference number: 3 (lower is better)
Translates to: DGDGGLWVRHSSWGSSRNPLPMA*APGFSD
Trigger: GTCAGAGAAGCCAGGAGCCAAAGCCATGGGCAGAGG...ATTTCTGCTGCTGCCCCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCCATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR TCA 72 bp GATACTCTGCGTAGGGAGGCTGGATGTCAAGGCCTGTaGGGGCCGCAATGCGGTGGTCAAGGGTCACCAGCA +
Preference number: 3 (lower is better)
Translates to: DTLRREAGCQGL*GPQCGGQGSPA
Trigger: TGCTGGTGACCCTTGACCACCGCATTGCGGCCCTCACAGGCCTTGACATCCAGCCTCCCTACGCAGAGTATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR TCA 72 bp ACCCACTTGTCTCCCACCAGCACAGGACAGCCAGCATaGAGTGTGTCACCATCCCCCTCTCCGCTCCTGTGC +
Preference number: 3 (lower is better)
Translates to: THLSPTSTGQPA*SVSPSPSPLLC
Trigger: GCACAGGAGCGGAGAGGGGGATGGTGACACACTTCATGCTGGCTGTCCTGTGCTGGTGGGAGACAAGTGGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR GCA 72 bp GAGCATGTACACATCCTGCAGCCGCATCAGGGCCCTTaGTGCTCCCTCGAGGTCCTCAAAGGCAGGAAGGTC +
Preference number: 3 (lower is better)
Translates to: EHVHILQPHQGP*CSLEVLKGRKV
Trigger: GACCTTCCTGCCTTTGAGGACCTCGAGGGAGCAGCAAGGGCCCTGATGCGGCTGCAGGATGTGTACATGCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR CCA 72 bp GGCTGGATGTCAAGGCCTGTGAGGGCCGCAATGCGGTaGTCAAGGGTCACCAGCATTGGATCAACCGTGTCC +
Preference number: 3 (lower is better)
Translates to: GWMSRPVRAAMR*SRVTSIGSTVS
Trigger: GGACACGGTTGATCCAATGCTGGTGACCCTTGACCACCGCATTGCGGCCCTCACAGGCCTTGACATCCAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR TCA 72 bp CTGTCTTCCACTCGCCGTGGGCTCTCCGGAAGAGACTaGCAGCTTCCTCCAGCCATGGGATGGCATGGTAGT +
Preference number: 3 (lower is better)
Translates to: LSSTRRGLSGRD*QLPPAMGWHGS
Trigger: ACTACCATGCCATCCCATGGCTGGAGGAAGCTGTCAGTCTCTTCCGGAGAGCCCACGGCGAGTGGAAGACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR GCA 72 bp CATGTACACATCCTGCAGCCGCATCAGGGCCCTTGCTaGTCCCTCGAGGTCCTCAAAGGCAGGAAGGTCTTG +
Preference number: 3 (lower is better)
Translates to: HVHILQPHQGPC*SLEVLKGRKVL
Trigger: CAAGACCTTCCTGCCTTTGAGGACCTCGAGGGAGCAGCAAGGGCCCTGATGCGGCTGCAGGATGTGTACATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR GCA 72 bp CCTGGTCTGCAGGTGGGGTACGTTGGGCCTCTGAATTaGAGTCTCAGCCGCCATCTGGTGACCATTCTCAGC +
Preference number: 3 (lower is better)
Translates to: PGLQVGYVGPLN*SLSRHLVTILS
Trigger: GCTGAGAATGGTCACCAGATGGCGGCTGAGACTGCAATTCAGAGGCCCAACGTACCCCACCTGCAGACCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR CCA 72 bp CCTCCTTTCGGGCAGGCTGGAGCAGTAGGTAGGGGCTaGAATTGGTCTCATAGGAGCAGTAGAGGCTGGGGA +
Preference number: 3 (lower is better)
Translates to: PPFGQAGAVGRG*NWSHRSSRGWG
Trigger: TCCCCAGCCTCTACTGCTCCTATGAGACCAATTCCAGCCCCTACCTACTGCTCCAGCCTGCCCGAAAGGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR CAA 90 bp GGATGGGGATGGAGGCCTCTGGGTCAGACACTCCTCCTGGGGCAGCAGCAGAAAAGTAAAGTCCTATCCTaGACTCACAGGCAGCAGCCT +
Preference number: 3 (lower is better)
Translates to: GWGWRPLGQTLLLGQQQKSKVLS*THRQQP
Trigger: AGGCTGCTGCCTGTGAGTCAAGGATAGGACTTTACT...TTTCTGCTGCTGCCCCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCCATCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR GCA 72 bp CCCTCCGATTCCATAGTTCACCACCTGGAGATACTCTaGGTAGGGAGGCTGGATGTCAAGGCCTGTGAGGGC +
Preference number: 3 (lower is better)
Translates to: PSDSIVHHLEIL*VGRLDVKACEG
Trigger: GCCCTCACAGGCCTTGACATCCAGCCTCCCTACGCAGAGTATCTCCAGGTGGTGAACTATGGAATCGGAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR CAA 90 bp CGCCCTCTTAGGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGCCTCTGCCCATGGCTTaGGCTCCTGGCTTCTCTGAC +
Preference number: 3 (lower is better)
Translates to: RPLRPLRLVHSTLKSHSWPLPMA*APGFSD
Trigger: GTCAGAGAAGCCAGGAGCCAAAGCCATGGGCAGAGG...CCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCCTAAGAGGGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR-3UTR CAA 90 bp CCTGTGAGGGCCGCAATGCGGTGGTCAAGGGTCACCAGCATTGGATCAACCGTGGAAACAGATGCAAATTaGGGGGATAGGGGGCTTCCT +
Preference number: 3 (lower is better)
Translates to: PVRAAMRWSRVTSIGSTVETDAN*GDRGLP
Trigger: AGGAAGCCCCCTATCCCCCAAATTTGCATCTGTTTC...CACGGTTGATCCAATGCTGGTGACCCTTGACCACCGCATTGCGGCCCTCACAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR TCA 72 bp CTCCACTTGCAACTGCTTTTCCCCCGAAGCCACCACTaGTCTCTGGAGCCACGGTTCTGCAAGCTCTCGGAT +
Preference number: 3 (lower is better)
Translates to: LHLQLLFPRSHH*SLEPRFCKLSD
Trigger: ATCCGAGAGCTTGCAGAACCGTGGCTCCAGAGATCAGTGGTGGCTTCGGGGGAAAAGCAGTTGCAAGTGGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR CCA 72 bp GGCTCTCCGGAAGAGACTGACAGCTTCCTCCAGCCATaGGATGGCATGGTAGTAATCCCCTGTGTCATAGGC +
Preference number: 3 (lower is better)
Translates to: GSPEETDSFLQP*DGMVVIPCVIG
Trigger: GCCTATGACACAGGGGATTACTACCATGCCATCCCATGGCTGGAGGAAGCTGTCAGTCTCTTCCGGAGAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR CCA 72 bp GTGCTGCAGGGTCTTCGGAATTCCTGTCCATACTCGTaGATCCACTTGTTGGCCACCCACTTGTCTCCCACC +
Preference number: 3 (lower is better)
Translates to: VLQGLRNSCPYS*IHLLATHLSPT
Trigger: GGTGGGAGACAAGTGGGTGGCCAACAAGTGGATCCACGAGTATGGACAGGAATTCCGAAGACCCTGCAGCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR GCA 72 bp CCCCTCTCCGCTCCTGTGCAGGTTCCACCAAAACAGTaGAGCATTCTTAACCACAGGCACACTGAAGTTGCC +
Preference number: 3 (lower is better)
Translates to: PLSAPVQVPPKQ*SILNHRHTEVA
Trigger: GGCAACTTCAGTGTGCCTGTGGTTAAGAATGCTGCACTGTTTTGGTGGAACCTGCACAGGAGCGGAGAGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR GCA 72 bp GCCATCTGCCAGTGTTTCAGTCTTCAGGGTTGGTGCTaGAGGGTCTTCGGAATTCCTGTCCATACTCGTGGA +
Preference number: 3 (lower is better)
Translates to: AICQCFSLQGWC*RVFGIPVHTRG
Trigger: TCCACGAGTATGGACAGGAATTCCGAAGACCCTGCAGCACCAACCCTGAAGACTGAAACACTGGCAGATGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR GCA 72 bp GCTGCCATCTGCCAGTGTTTCAGTCTTCAGGGTTGGTaGTGCAGGGTCTTCGGAATTCCTGTCCATACTCGT +
Preference number: 3 (lower is better)
Translates to: AAICQCFSLQGW*CRVFGIPVHTR
Trigger: ACGAGTATGGACAGGAATTCCGAAGACCCTGCAGCACCAACCCTGAAGACTGAAACACTGGCAGATGGCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR CAA 90 bp GGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGAGTAGAAACACCTCTGCCCATGGCTTaGGCTCCTGGCTTCTCTGAC +
Preference number: 3 (lower is better)
Translates to: GLFVLSIRLLSLTAGVETPLPMA*APGFSD
Trigger: GTCAGAGAAGCCAGGAGCCAAAGCCATGGGCAGAGG...TGTTTCTACTCCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR-3UTR CAA 90 bp GCAATGCGGTGGTCAAGGGTCACCAGCATTGGATCAACCGTGTCCTTTAGCCAGAAAGGCAGGAAGGTCTaGCTCTACCTTCTCATAGCC +
Preference number: 3 (lower is better)
Translates to: AMRWSRVTSIGSTVSFSQKGRKV*LYLLIA
Trigger: GGCTATGAGAAGGTAGAGCAAGACCTTCCTGCCTTT...CTGGCTAAAGGACACGGTTGATCCAATGCTGGTGACCCTTGACCACCGCATTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR CAA 90 bp TGGAATTGGTCTCATAGGAGCAGTAGAGGCTGGGGATTTGGTAGTGTGTTGGCTGGCCACCTTGCCAACTaGGAAGCAGTCATCCGCTGT +
Preference number: 3 (lower is better)
Translates to: WNWSHRSSRGWGFGSVLAGHLAN*EAVIRC
Trigger: ACAGCGGATGACTGCTTCCAAGTTGGCAAGGTGGCC...AGCCAACACACTACCAAATCCCCAGCCTCTACTGCTCCTATGAGACCAATTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR CCA 72 bp TCTCATAGCCATCCTTCAGAGCTCGGATGTTCTCAGTaGCCTCCAGACTATGTACCACATTCCTCCAGTCGG +
Preference number: 3 (lower is better)
Translates to: SHSHPSELGCSQ*PPDYVPHSSSR
Trigger: CCGACTGGAGGAATGTGGTACATAGTCTGGAGGCCACTGAGAACATCCGAGCTCTGAAGGATGGCTATGAGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR CAA 90 bp CGCCCTCTTAGGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGGAAACAGATGCAAATTaGGGGGATAGGGGGCTTCCT +
Preference number: 3 (lower is better)
Translates to: RPLRPLRLVHSTLKSHSWETDAN*GDRGLP
Trigger: AGGAAGCCCCCTATCCCCCAAATTTGCATCTGTTTC...CCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCCTAAGAGGGCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR TCA 72 bp TGTCTGGGCTGTAGACAAGGAACTCTCGAGAGAGGCTaGGGGCACATGAAACATTTCCTACCTGGAAACAGG +
Preference number: 3 (lower is better)
Translates to: CLGCRQGTLERG*GHMKHFLPGNR
Trigger: CCTGTTTCCAGGTAGGAAATGTTTCATGTGCCCTCAGCCTCTCTCGAGAGTTCCTTGTCTACAGCCCAGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR GCA 72 bp GCCTCCAGACTATGTACCACATTCCTCCAGTCGGACTaGAGACGTTTGATGAGAGTGAAGGCAAGTAGAGGA +
Preference number: 3 (lower is better)
Translates to: ASRLCTTFLQSD*RRLMRVKASRG
Trigger: TCCTCTACTTGCCTTCACTCTCATCAAACGTCTGCAGTCCGACTGGAGGAATGTGGTACATAGTCTGGAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR GCA 72 bp TCCAGCTTCTACGGAGCTCAGATAGATCATAAACGTTaGCACTCGGTTCCCAGACTTCATTCTGTACAGGGG +
Preference number: 3 (lower is better)
Translates to: SSFYGAQIDHKR*HSVPRLHSVQG
Trigger: CCCCTGTACAGAATGAAGTCTGGGAACCGAGTGGCAACGTTTATGATCTATCTGAGCTCCGTAGAAGCTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR-3UTR CAA 90 bp GGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGAGTAGAAACAAGTAAAGTCCTATCCTaGACTCACAGGCAGCAGCCT +
Preference number: 3 (lower is better)
Translates to: GLFVLSIRLLSLTAGVETSKVLS*THRQQP
Trigger: AGGCTGCTGCCTGTGAGTCAAGGATAGGACTTTACT...TGTTTCTACTCCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR-3UTR CAA 90 bp CCTTTTATTCCTAAGGACATCTGCGCCCTCTTAGGCCTCTTCGTCTTGTCCATTGAAACAGATGCAAATTaGGGGGATAGGGGGCTTCCT +
Preference number: 3 (lower is better)
Translates to: PFIPKDICALLGLFVLSIETDAN*GDRGLP
Trigger: AGGAAGCCCCCTATCCCCCAAATTTGCATCTGTTTC...AATGGACAAGACGAAGAGGCCTAAGAGGGCGCAGATGTCCTTAGGAATAAAAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR-3UTR CAA 90 bp TGGAATTGGTCTCATAGGAGCAGTAGAGGCTGGGGATTTGGTAGTGTGTTGGCTAAATCAGCCCCATTATaGTTTGCAGTGTGTGTGTGG +
Preference number: 3 (lower is better)
Translates to: WNWSHRSSRGWGFGSVLAKSAPL*FAVCVW
Trigger: CCACACACACACTGCAAACAATAATGGGGCTGATTT...AGCCAACACACTACCAAATCCCCAGCCTCTACTGCTCCTATGAGACCAATTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
3UTR GCA 72 bp TACACTGAGCTCAATCCTTTTATTCCTAAGGACATCTaGGCCCTCTTAGGCCTCTTCGTCTTGTCCATTCGA +
Preference number: 3 (lower is better)
Translates to: YTELNPFIPKDI*ALLGLFVLSIR
Trigger: TCGAATGGACAAGACGAAGAGGCCTAAGAGGGCGCAGATGTCCTTAGGAATAAAAGGATTGAGCTCAGTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR CCA 72 bp CAGAAATCAGCCCCATTATTGTTTGCAGTGTGTGTGTaGGTATATGAGGATGGGTGTATGGATGTGTGTGTG +
Preference number: 3 (lower is better)
Translates to: QKSAPLLFAVCV*VYEDGCMDVCV
Trigger: CACACACACATCCATACACCCATCCTCATATACCCACACACACACTGCAAACAATAATGGGGCTGATTTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
3UTR CCA 72 bp TCTCAGCCAAGAGCCTTTCATATTTCAACACATTCCTaGCCATCCTCTTATTGTCTGGGCTGTAGACAAGGA +
Preference number: 3 (lower is better)
Translates to: SQPRAFHISTHS*PSSYCLGCRQG
Trigger: TCCTTGTCTACAGCCCAGACAATAAGAGGATGGCCAGGAATGTGTTGAAATATGAAAGGCTCTTGGCTGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
CDS-3UTR CCA 90 bp CAGGCAGCAGCCTTGCTGGAGGCCTTCCTTCAGGAGGGTCGGCTCCCCTCTGCCGGGCGCGCGCCACGCTaGTCAGCGCGGAGAACGTGT +
Preference number: 4 (lower is better)
Translates to: QAAALLEAFLQEGRLPSAGRAPR*SARRTC
Trigger: ACACGTTCTCCGCGCTGACCAGCGTGGCGCGCGCCC...GGCAGAGGGGAGCCGACCCTCCTGAAGGAAGGCCTCCAGCAAGGCTGCTGCCTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000139790.8
CDS-3UTR CCA 90 bp CTGGAGGCCTTCCTTCAGGAGGGTCGGCTCCCCTCTGCCCATGGCTTTGGCTCCGGGCGTCTTCCAGACTaGCCTCGTCCTCTGTCTTCC +
Preference number: 4 (lower is better)
Translates to: LEAFLQEGRLPSAHGFGSGRLPD*PRPLSS
Trigger: GGAAGACAGAGGACGAGGCCAGTCTGGAAGACGCCC...GGAGCCAAAGCCATGGGCAGAGGGGAGCCGACCCTCCTGAAGGAAGGCCTCCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR TCA 90 bp CTGGAGGCCTTCCTTCAGGAGGGTCGGCTCCCCTCTGCCCATGGCTTTGGCTCCACAGGACAGCCAGCATaGAGTGTGTCACCATCCCCC +
Preference number: 4 (lower is better)
Translates to: LEAFLQEGRLPSAHGFGSTGQPA*SVSPSP
Trigger: GGGGGATGGTGACACACTTCATGCTGGCTGTCCTGT...GGAGCCAAAGCCATGGGCAGAGGGGAGCCGACCCTCCTGAAGGAAGGCCTCCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR GCA 90 bp CTGGAGGCCTTCCTTCAGGAGGGTCGGCTCCCCTCTGCCCATGGCTTTGGCTCCCATCAGGGCCCTTGCTaGTCCCTCGAGGTCCTCAAA +
Preference number: 4 (lower is better)
Translates to: LEAFLQEGRLPSAHGFGSHQGPC*SLEVLK
Trigger: TTTGAGGACCTCGAGGGAGCAGCAAGGGCCCTGATG...GGAGCCAAAGCCATGGGCAGAGGGGAGCCGACCCTCCTGAAGGAAGGCCTCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057023.12
CDS-3UTR GCA 90 bp CAGGCAGCAGCCTTGCTGGAGGCCTTCCTTCAGGAGGGTCGGCTCCCCTCTGCCCACCTGGAGATACTCTaGGTAGGGAGGCTGGATGTC +
Preference number: 4 (lower is better)
Translates to: QAAALLEAFLQEGRLPSAHLEIL*VGRLDV
Trigger: GACATCCAGCCTCCCTACGCAGAGTATCTCCAGGTG...GGCAGAGGGGAGCCGACCCTCCTGAAGGAAGGCCTCCAGCAAGGCTGCTGCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CCA 90 bp CAGGCAGCAGCCTTGCTGGAGGCCTTCCTTCAGGAGGGTCGGCTCCCCTCTGCCGCCACCTTGCCAACTTaGAAGCAGTCATCCGCTGTG +
Preference number: 4 (lower is better)
Translates to: QAAALLEAFLQEGRLPSAATLPT*KQSSAV
Trigger: CACAGCGGATGACTGCTTCCAAGTTGGCAAGGTGGC...GGCAGAGGGGAGCCGACCCTCCTGAAGGAAGGCCTCCAGCAAGGCTGCTGCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CCA 90 bp CTGGAGGCCTTCCTTCAGGAGGGTCGGCTCCCCTCTGCCCATGGCTTTGGCTCCAGGGCCGCAATGCGGTaGTCAAGGGTCACCAGCATT +
Preference number: 4 (lower is better)
Translates to: LEAFLQEGRLPSAHGFGSRAAMR*SRVTSI
Trigger: AATGCTGGTGACCCTTGACCACCGCATTGCGGCCCT...GGAGCCAAAGCCATGGGCAGAGGGGAGCCGACCCTCCTGAAGGAAGGCCTCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR TCA 90 bp GGGATGGGGATGGAGGCCTCTGGGTCAGACACTCCTCCTGGGGCAGCAGCAGAACTCTCCGGAAGAGACTaGCAGCTTCCTCCAGCCATG +
Preference number: 4 (lower is better)
Translates to: GMGMEASGSDTPPGAAAELSGRD*QLPPAM
Trigger: CATGGCTGGAGGAAGCTGTCAGTCTCTTCCGGAGAG...TTCTGCTGCTGCCCCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCCATCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR TCA 90 bp CTGGAGGCCTTCCTTCAGGAGGGTCGGCTCCCCTCTGCCCATGGCTTTGGCTCCGCCAGGCACTTTTGCTaGTGCGGTACTCCACTTGCA +
Preference number: 4 (lower is better)
Translates to: LEAFLQEGRLPSAHGFGSARHFC*CGTPLA
Trigger: TGCAAGTGGAGTACCGCATCAGCAAAAGTGCCTGGC...GGAGCCAAAGCCATGGGCAGAGGGGAGCCGACCCTCCTGAAGGAAGGCCTCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CCA 90 bp GGGATGGGGATGGAGGCCTCTGGGTCAGACACTCCTCCTGGGGCAGCAGCAGAAGCCACCACTGATCTCTaGAGCCACGGTTCTGCAAGC +
Preference number: 4 (lower is better)
Translates to: GMGMEASGSDTPPGAAAEATTDL*SHGSAS
Trigger: GCTTGCAGAACCGTGGCTCCAGAGATCAGTGGTGGC...TTCTGCTGCTGCCCCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCCATCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR TCA 90 bp CAGGCAGCAGCCTTGCTGGAGGCCTTCCTTCAGGAGGGTCGGCTCCCCTCTGCCGAGGCTGAGGGCACATaGAACATTTCCTACCTGGAA +
Preference number: 4 (lower is better)
Translates to: QAAALLEAFLQEGRLPSAEAEGT*NISYLE
Trigger: TTCCAGGTAGGAAATGTTTCATGTGCCCTCAGCCTC...GGCAGAGGGGAGCCGACCCTCCTGAAGGAAGGCCTCCAGCAAGGCTGCTGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR GCA 90 bp CTGGAGGCCTTCCTTCAGGAGGGTCGGCTCCCCTCTGCCCATGGCTTTGGCTCCCTTCAGGGTTGGTGCTaGAGGGTCTTCGGAATTCCT +
Preference number: 4 (lower is better)
Translates to: LEAFLQEGRLPSAHGFGSLQGWC*RVFGIP
Trigger: AGGAATTCCGAAGACCCTGCAGCACCAACCCTGAAG...GGAGCCAAAGCCATGGGCAGAGGGGAGCCGACCCTCCTGAAGGAAGGCCTCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
3UTR CAA 72 bp ACCCTCTGGAAGACGCCTCGAGCCAAGCCCTTCACGTaGAGCATGTACACATCCTGCAGCCGCATCAGGGCC +
Preference number: 4 (lower is better)
Translates to: TLWKTPRAKPFT*SMYTSCSRIRA
Trigger: GGCCCTGATGCGGCTGCAGGATGTGTACATGCTCAACGTGAAGGGCTTGGCTCGAGGCGTCTTCCAGAGGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
CDS-3UTR TCA 90 bp GATGGGGATGGAGGCCTCTGGGTCAGACACTCCTCCTGGGGCAGCAGCAGAAATTCAGCCGCCATCTGGTaGCCATTCTCAGCCAAGAGC +
Preference number: 4 (lower is better)
Translates to: DGDGGLWVRHSSWGSSRNSAAIW*PFSAKS
Trigger: GCTCTTGGCTGAGAATGGTCACCAGATGGCGGCTGA...ATTTCTGCTGCTGCCCCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR TCA 90 bp GATGGGGATGGAGGCCTCTGGGTCAGACACTCCTCCTGGGGCAGCAGCAGAAATACAGGACAGCCAGCATaGAGTGTGTCACCATCCCCC +
Preference number: 4 (lower is better)
Translates to: DGDGGLWVRHSSWGSSRNTGQPA*SVSPSP
Trigger: GGGGGATGGTGACACACTTCATGCTGGCTGTCCTGT...ATTTCTGCTGCTGCCCCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCCATC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR GCA 90 bp CCTTCCTTCAGGAGGGTCGGCTCCCCTCTGCCCATGGCTTTGGCTCCTGGCTTCTACTCCACTTGCAACTaGTTTTCCCCCGAAGCCACC +
Preference number: 4 (lower is better)
Translates to: PSFRRVGSPLPMALAPGFYSTCN*FSPEAT
Trigger: GGTGGCTTCGGGGGAAAAGCAGTTGCAAGTGGAGTA...GAAGCCAGGAGCCAAAGCCATGGGCAGAGGGGAGCCGACCCTCCTGAAGGAAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CCA 90 bp ATGGGATGGCATGGTAGTAATCCCCTGTGTCATAGGCCACCTTGCCAACTTGGAGGGCGCGCGCCACGCTaGTCAGCGCGGAGAACGTGT +
Preference number: 4 (lower is better)
Translates to: MGWHGSNPLCHRPPCQLGGRAPR*SARRTC
Trigger: ACACGTTCTCCGCGCTGACCAGCGTGGCGCGCGCCC...TCCAAGTTGGCAAGGTGGCCTATGACACAGGGGATTACTACCATGCCATCCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
CDS-3UTR CCA 90 bp CTGGAGGCCTTCCTTCAGGAGGGTCGGCTCCCCTCTGCCCATGGCTTTGGCTCCAGGAGCAGTAGAGGCTaGGGATTTGGTAGTGTGTTG +
Preference number: 4 (lower is better)
Translates to: LEAFLQEGRLPSAHGFGSRSSRG*GFGSVL
Trigger: CAACACACTACCAAATCCCCAGCCTCTACTGCTCCT...GGAGCCAAAGCCATGGGCAGAGGGGAGCCGACCCTCCTGAAGGAAGGCCTCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CCA 90 bp GGATGGGGATGGAGGCCTCTGGGTCAGACACTCCTCCTGGGGCAGCAGCAGAAACGTGGATCCACTTGTTaGCCACCCACTTGTCTCCCA +
Preference number: 4 (lower is better)
Translates to: GWGWRPLGQTLLLGQQQKRGSTC*PPTCLP
Trigger: TGGGAGACAAGTGGGTGGCCAACAAGTGGATCCACG...TTTCTGCTGCTGCCCCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCCATCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR TCA 90 bp CCTTCCTTCAGGAGGGTCGGCTCCCCTCTGCCCATGGCTTTGGCTCCTGGCTTCACTCTCGAGAGAGGCTaGGGGCACATGAAACATTTC +
Preference number: 4 (lower is better)
Translates to: PSFRRVGSPLPMALAPGFTLERG*GHMKHF
Trigger: GAAATGTTTCATGTGCCCTCAGCCTCTCTCGAGAGT...GAAGCCAGGAGCCAAAGCCATGGGCAGAGGGGAGCCGACCCTCCTGAAGGAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CCA 90 bp GATGGGGATGGAGGCCTCTGGGTCAGACACTCCTCCTGGGGCAGCAGCAGAAATCCTCCAGCCATGGGATaGCATGGTAGTAATCCCCTG +
Preference number: 4 (lower is better)
Translates to: DGDGGLWVRHSSWGSSRNPPAMG*HGSNPL
Trigger: CAGGGGATTACTACCATGCCATCCCATGGCTGGAGG...ATTTCTGCTGCTGCCCCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCCATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CCA 90 bp CCTTCCTTCAGGAGGGTCGGCTCCCCTCTGCCCATGGCTTTGGCTCCTGGCTTCAGCTTCCTCCAGCCATaGGATGGCATGGTAGTAATC +
Preference number: 4 (lower is better)
Translates to: PSFRRVGSPLPMALAPGFSFLQP*DGMVVI
Trigger: GATTACTACCATGCCATCCCATGGCTGGAGGAAGCT...GAAGCCAGGAGCCAAAGCCATGGGCAGAGGGGAGCCGACCCTCCTGAAGGAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR GCA 90 bp GCCCTCTTAGGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGACCGCATCAGGGCCCTTaGTGCTCCCTCGAGGTCCTC +
Preference number: 4 (lower is better)
Translates to: ALLGLFVLSIRLLSLTAGPHQGP*CSLEVL
Trigger: GAGGACCTCGAGGGAGCAGCAAGGGCCCTGATGCGG...TCCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCCTAAGAGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057023.12
CDS-3UTR TCA 90 bp GCCCTCTTAGGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGAGGATGTCAAGGCCTGTaGGGGCCGCAATGCGGTGGT +
Preference number: 4 (lower is better)
Translates to: ALLGLFVLSIRLLSLTAGGCQGL*GPQCGG
Trigger: ACCACCGCATTGCGGCCCTCACAGGCCTTGACATCC...TCCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCCTAAGAGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR GCA 90 bp CCTTCCTTCAGGAGGGTCGGCTCCCCTCTGCCCATGGCTTTGGCTCCTGGCTTCGTTCCACCAAAACAGTaGAGCATTCTTAACCACAGG +
Preference number: 4 (lower is better)
Translates to: PSFRRVGSPLPMALAPGFVPPKQ*SILNHR
Trigger: CCTGTGGTTAAGAATGCTGCACTGTTTTGGTGGAAC...GAAGCCAGGAGCCAAAGCCATGGGCAGAGGGGAGCCGACCCTCCTGAAGGAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CCA 90 bp TGGGGATGGAGGCCTCTGGGTCAGACACTCCTCCTGGGGCAGCAGCAGAAATCAAGGAGCAGTAGAGGCTaGGGATTTGGTAGTGTGTTG +
Preference number: 4 (lower is better)
Translates to: WGWRPLGQTLLLGQQQKSRSSRG*GFGSVL
Trigger: CAACACACTACCAAATCCCCAGCCTCTACTGCTCCT...TGATTTCTGCTGCTGCCCCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
3UTR CAA 72 bp GGAATTGGTCTCATAGGAGCAGTAGAGGCTGGGGATTaGGTAGTGTGTTGGCTGGGAGCCCAGGGTCTGGCA +
Preference number: 4 (lower is better)
Translates to: GIGLIGAVEAGD*VVCWLGAQGLA
Trigger: TGCCAGACCCTGGGCTCCCAGCCAACACACTACCAAATCCCCAGCCTCTACTGCTCCTATGAGACCAATTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
CDS-3UTR TCA 90 bp CGCCCTCTTAGGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGCTCTCCGGAAGAGACTaGCAGCTTCCTCCAGCCATG +
Preference number: 4 (lower is better)
Translates to: RPLRPLRLVHSTLKSHSWLSGRD*QLPPAM
Trigger: CATGGCTGGAGGAAGCTGTCAGTCTCTTCCGGAGAG...CCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCCTAAGAGGGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR TCA 90 bp CGCCCTCTTAGGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGTCAGCCGCCATCTGGTaGCCATTCTCAGCCAAGAGC +
Preference number: 4 (lower is better)
Translates to: RPLRPLRLVHSTLKSHSWSAAIW*PFSAKS
Trigger: GCTCTTGGCTGAGAATGGTCACCAGATGGCGGCTGA...CCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCCTAAGAGGGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR GCA 90 bp CCTTCCTTCAGGAGGGTCGGCTCCCCTCTGCCCATGGCTTTGGCTCCTGGCTTCATAGATCATAAACGTTaGCACTCGGTTCCCAGACTT +
Preference number: 4 (lower is better)
Translates to: PSFRRVGSPLPMALAPGFIDHKR*HSVPRL
Trigger: AAGTCTGGGAACCGAGTGGCAACGTTTATGATCTAT...GAAGCCAGGAGCCAAAGCCATGGGCAGAGGGGAGCCGACCCTCCTGAAGGAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057023.12
CDS-3UTR CCA 90 bp CGCCCTCTTAGGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGGCCACCACTGATCTCTaGAGCCACGGTTCTGCAAGC +
Preference number: 4 (lower is better)
Translates to: RPLRPLRLVHSTLKSHSWATTDL*SHGSAS
Trigger: GCTTGCAGAACCGTGGCTCCAGAGATCAGTGGTGGC...CCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCCTAAGAGGGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
3UTR CAA 72 bp GGTCTTCGGAATTCCTGTCCATACTCGTGGATCCACTaGTTGGCCACCCACTTGTCTCCCACCAGCACAGGA +
Preference number: 4 (lower is better)
Translates to: GLRNSCPYSWIH*LATHLSPTSTG
Trigger: TCCTGTGCTGGTGGGAGACAAGTGGGTGGCCAACAAGTGGATCCACGAGTATGGACAGGAATTCCGAAGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
CDS-3UTR GCA 90 bp GATGGGGATGGAGGCCTCTGGGTCAGACACTCCTCCTGGGGCAGCAGCAGAAATGTTCCACCAAAACAGTaGAGCATTCTTAACCACAGG +
Preference number: 4 (lower is better)
Translates to: DGDGGLWVRHSSWGSSRNVPPKQ*SILNHR
Trigger: CCTGTGGTTAAGAATGCTGCACTGTTTTGGTGGAAC...ATTTCTGCTGCTGCCCCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR GCA 90 bp CGCCCTCTTAGGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGCCCTCTCCGCTCCTGTaGAGGTTCCACCAAAACAGT +
Preference number: 4 (lower is better)
Translates to: RPLRPLRLVHSTLKSHSWPSPLL*RFHQNS
Trigger: ACTGTTTTGGTGGAACCTGCACAGGAGCGGAGAGGG...CCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCCTAAGAGGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CCA 90 bp CGCCCTCTTAGGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGCGTGGATCCACTTGTTaGCCACCCACTTGTCTCCCA +
Preference number: 4 (lower is better)
Translates to: RPLRPLRLVHSTLKSHSWRGSTC*PPTCLP
Trigger: TGGGAGACAAGTGGGTGGCCAACAAGTGGATCCACG...CCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCCTAAGAGGGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR GCA 90 bp GCCCTCTTAGGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGAGTGAGAGAGAAGAGCTaGCTGGGACTGTACAGGTCG +
Preference number: 4 (lower is better)
Translates to: ALLGLFVLSIRLLSLTAGVREKS*LGLYRS
Trigger: CGACCTGTACAGTCCCAGGCAGCTCTTCTCTCTCAC...TCCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCCTAAGAGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CCA 90 bp GGATGGGGATGGAGGCCTCTGGGTCAGACACTCCTCCTGGGGCAGCAGCAGAAAATTTCAACACATTCCTaGCCATCCTCTTATTGTCTG +
Preference number: 4 (lower is better)
Translates to: GWGWRPLGQTLLLGQQQKISTHS*PSSYCL
Trigger: CAGACAATAAGAGGATGGCCAGGAATGTGTTGAAAT...TTTCTGCTGCTGCCCCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCCATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
3UTR CAA 72 bp ACAAGCTGCCATCTGCCAGTGTTTCAGTCTTCAGGGTaGGTGCTGCAGGGTCTTCGGAATTCCTGTCCATAC +
Preference number: 4 (lower is better)
Translates to: TSCHLPVFQSSG*VLQGLRNSCPY
Trigger: GTATGGACAGGAATTCCGAAGACCCTGCAGCACCAACCCTGAAGACTGAAACACTGGCAGATGGCAGCTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
CDS-3UTR TCA 90 bp CAGCAGAAATCAGCCCCATTATTGTTTGCAGTGTGTGTGTGGGTATATGAGGATGGATGTCAAGGCCTGTaGGGGCCGCAATGCGGTGGT +
Preference number: 4 (lower is better)
Translates to: QQKSAPLLFAVCVWVYEDGCQGL*GPQCGG
Trigger: ACCACCGCATTGCGGCCCTCACAGGCCTTGACATCC...ATCCTCATATACCCACACACACACTGCAAACAATAATGGGGCTGATTTCTGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR GCA 90 bp GATGGGGATGGAGGCCTCTGGGTCAGACACTCCTCCTGGGGCAGCAGCAGAAATATCTTCAAGTCCTCGTaGAAAGAAAGTACCTTGTCA +
Preference number: 4 (lower is better)
Translates to: DGDGGLWVRHSSWGSSRNIFKSS*KESTLS
Trigger: TGACAAGGTACTTTCTTTGCACGAGGACTTGAAGAT...ATTTCTGCTGCTGCCCCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057023.12
CDS-3UTR GCA 90 bp GCCCTCTTAGGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGACTGGAGCCACGGTTCTaGAAGCTCTCGGATTTTCTG +
Preference number: 4 (lower is better)
Translates to: ALLGLFVLSIRLLSLTAGLEPRF*KLSDFL
Trigger: CAGAAAATCCGAGAGCTTGCAGAACCGTGGCTCCAG...TCCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCCTAAGAGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CCA 90 bp TGGGGATGGAGGCCTCTGGGTCAGACACTCCTCCTGGGGCAGCAGCAGAAATCAATTTCAACACATTCCTaGCCATCCTCTTATTGTCTG +
Preference number: 4 (lower is better)
Translates to: WGWRPLGQTLLLGQQQKSISTHS*PSSYCL
Trigger: CAGACAATAAGAGGATGGCCAGGAATGTGTTGAAAT...TGATTTCTGCTGCTGCCCCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CCA 90 bp CGCCCTCTTAGGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGGGTAGGGGCTGGAATTaGTCTCATAGGAGCAGTAGA +
Preference number: 4 (lower is better)
Translates to: RPLRPLRLVHSTLKSHSWGRGWN*SHRSSR
Trigger: TCTACTGCTCCTATGAGACCAATTCCAGCCCCTACC...CCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCCTAAGAGGGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR TCA 90 bp GCCCTCTTAGGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGAGAGGCTGAGGGCACATaGAACATTTCCTACCTGGAA +
Preference number: 4 (lower is better)
Translates to: ALLGLFVLSIRLLSLTAGEAEGT*NISYLE
Trigger: TTCCAGGTAGGAAATGTTTCATGTGCCCTCAGCCTC...TCCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCCTAAGAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR GCA 90 bp GCCCTCTTAGGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGATTCCTCCAGTCGGACTaGAGACGTTTGATGAGAGTG +
Preference number: 4 (lower is better)
Translates to: ALLGLFVLSIRLLSLTAGFLQSD*RRLMRV
Trigger: CACTCTCATCAAACGTCTGCAGTCCGACTGGAGGAA...TCCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCCTAAGAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057023.12
CDS-3UTR GCA 90 bp CGCCCTCTTAGGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGTGTCATAGGCCACCTTaGCAACTTGGAAGCAGTCAT +
Preference number: 4 (lower is better)
Translates to: RPLRPLRLVHSTLKSHSWCHRPP*QLGSSH
Trigger: ATGACTGCTTCCAAGTTGGCAAGGTGGCCTATGACA...CCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCCTAAGAGGGCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR GCA 90 bp GGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGAGTAGAAACACCCTCTCCGCTCCTGTaGAGGTTCCACCAAAACAGT +
Preference number: 4 (lower is better)
Translates to: GLFVLSIRLLSLTAGVETPSPLL*RFHQNS
Trigger: ACTGTTTTGGTGGAACCTGCACAGGAGCGGAGAGGG...TGTTTCTACTCCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CCA 90 bp CAGCAGAAATCAGCCCCATTATTGTTTGCAGTGTGTGTGTGGGTATATGAGGATGTCTTCCACTCGCCGTaGGCTCTCCGGAAGAGACTG +
Preference number: 4 (lower is better)
Translates to: QQKSAPLLFAVCVWVYEDVFHSP*ALRKRL
Trigger: CAGTCTCTTCCGGAGAGCCCACGGCGAGTGGAAGAC...ATCCTCATATACCCACACACACACTGCAAACAATAATGGGGCTGATTTCTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CCA 90 bp CAGCAGAAATCAGCCCCATTATTGTTTGCAGTGTGTGTGTGGGTATATGAGGATGGGCGTCTTCCAGACTaGCCTCGTCCTCTGTCTTCC +
Preference number: 4 (lower is better)
Translates to: QQKSAPLLFAVCVWVYEDGRLPD*PRPLSS
Trigger: GGAAGACAGAGGACGAGGCCAGTCTGGAAGACGCCC...ATCCTCATATACCCACACACACACTGCAAACAATAATGGGGCTGATTTCTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
3UTR CAA 72 bp CCTAAGGACATCTGCGCCCTCTTAGGCCTCTTCGTCTaGTCCATTCGACTCTTAAGTCTCACAGCTGGAGTA +
Preference number: 4 (lower is better)
Translates to: PKDICALLGLFV*SIRLLSLTAGV
Trigger: TACTCCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCCTAAGAGGGCGCAGATGTCCTTAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
CDS-3UTR CCA 90 bp CGCCCTCTTAGGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGGAAACATTTCCTACCTaGAAACAGGCAAAGGCCAAG +
Preference number: 4 (lower is better)
Translates to: RPLRPLRLVHSTLKSHSWETFPT*KQAKAK
Trigger: CTTGGCCTTTGCCTGTTTCCAGGTAGGAAATGTTTC...CCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCCTAAGAGGGCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CCA 90 bp CCTTTTATTCCTAAGGACATCTGCGCCCTCTTAGGCCTCTTCGTCTTGTCCATTGCAGTAGGTAGGGGCTaGAATTGGTCTCATAGGAGC +
Preference number: 4 (lower is better)
Translates to: PFIPKDICALLGLFVLSIAVGRG*NWSHRS
Trigger: GCTCCTATGAGACCAATTCCAGCCCCTACCTACTGC...AATGGACAAGACGAAGAGGCCTAAGAGGGCGCAGATGTCCTTAGGAATAAAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CCA 90 bp GGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGAGTAGAAACAGCAGTAGGTAGGGGCTaGAATTGGTCTCATAGGAGC +
Preference number: 4 (lower is better)
Translates to: GLFVLSIRLLSLTAGVETAVGRG*NWSHRS
Trigger: GCTCCTATGAGACCAATTCCAGCCCCTACCTACTGC...TGTTTCTACTCCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CCA 90 bp GGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGAGTAGAAACATCCTGTCCATACTCGTaGATCCACTTGTTGGCCACC +
Preference number: 4 (lower is better)
Translates to: GLFVLSIRLLSLTAGVETSCPYS*IHLLAT
Trigger: GGTGGCCAACAAGTGGATCCACGAGTATGGACAGGA...TGTTTCTACTCCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR GCA 90 bp CAGCAGAAATCAGCCCCATTATTGTTTGCAGTGTGTGTGTGGGTATATGAGGATCACCTGGAGATACTCTaGGTAGGGAGGCTGGATGTC +
Preference number: 4 (lower is better)
Translates to: QQKSAPLLFAVCVWVYEDHLEIL*VGRLDV
Trigger: GACATCCAGCCTCCCTACGCAGAGTATCTCCAGGTG...ATCCTCATATACCCACACACACACTGCAAACAATAATGGGGCTGATTTCTGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR GCA 90 bp GGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGAGTAGAAACAAGTCTTCAGGGTTGGTaGTGCAGGGTCTTCGGAATT +
Preference number: 4 (lower is better)
Translates to: GLFVLSIRLLSLTAGVETSLQGW*CRVFGI
Trigger: AATTCCGAAGACCCTGCAGCACCAACCCTGAAGACT...TGTTTCTACTCCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CCA 90 bp CAGCAGAAATCAGCCCCATTATTGTTTGCAGTGTGTGTGTGGGTATATGAGGATGATTTGGTAGTGTGTTaGCTGGGAGCCCAGGGTCTG +
Preference number: 4 (lower is better)
Translates to: QQKSAPLLFAVCVWVYEDDLVVC*LGAQGL
Trigger: CAGACCCTGGGCTCCCAGCCAACACACTACCAAATC...ATCCTCATATACCCACACACACACTGCAAACAATAATGGGGCTGATTTCTGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR GCA 90 bp GGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGAGTAGAAACATGTCATAGGCCACCTTaGCAACTTGGAAGCAGTCAT +
Preference number: 4 (lower is better)
Translates to: GLFVLSIRLLSLTAGVETCHRPP*QLGSSH
Trigger: ATGACTGCTTCCAAGTTGGCAAGGTGGCCTATGACA...TGTTTCTACTCCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR GCA 90 bp CAGCAGAAATCAGCCCCATTATTGTTTGCAGTGTGTGTGTGGGTATATGAGGATTACTCCACTTGCAACTaGTTTTCCCCCGAAGCCACC +
Preference number: 4 (lower is better)
Translates to: QQKSAPLLFAVCVWVYEDYSTCN*FSPEAT
Trigger: GGTGGCTTCGGGGGAAAAGCAGTTGCAAGTGGAGTA...ATCCTCATATACCCACACACACACTGCAAACAATAATGGGGCTGATTTCTGCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR GCA 90 bp CAGCAGAAATCAGCCCCATTATTGTTTGCAGTGTGTGTGTGGGTATATGAGGATCTTCAGGGTTGGTGCTaGAGGGTCTTCGGAATTCCT +
Preference number: 4 (lower is better)
Translates to: QQKSAPLLFAVCVWVYEDLQGWC*RVFGIP
Trigger: AGGAATTCCGAAGACCCTGCAGCACCAACCCTGAAG...ATCCTCATATACCCACACACACACTGCAAACAATAATGGGGCTGATTTCTGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR GCA 90 bp CAGCAGAAATCAGCCCCATTATTGTTTGCAGTGTGTGTGTGGGTATATGAGGATAGTCTTCAGGGTTGGTaGTGCAGGGTCTTCGGAATT +
Preference number: 4 (lower is better)
Translates to: QQKSAPLLFAVCVWVYEDSLQGW*CRVFGI
Trigger: AATTCCGAAGACCCTGCAGCACCAACCCTGAAGACT...ATCCTCATATACCCACACACACACTGCAAACAATAATGGGGCTGATTTCTGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGCTTGTATATATGTGTATGTATATGTGTGTACGCATGTCTGTAGGGCCGCAATGCGGTaGTCAAGGGTCACCAGCATT +
Preference number: 4 (lower is better)
Translates to: VCVCACIYVYVYVCTHVCRAAMR*SRVTSI
Trigger: AATGCTGGTGACCCTTGACCACCGCATTGCGGCCCT...ACAGACATGCGTACACACATATACATACACATATATACAAGCACACACACACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
3UTR CAA 72 bp CTATGTACCACATTCCTCCAGTCGGACTGCAGACGTTaGATGAGAGTGAAGGCAAGTAGAGGATTCACTACA +
Preference number: 4 (lower is better)
Translates to: LCTTFLQSDCRR*MRVKASRGFTT
Trigger: TGTAGTGAATCCTCTACTTGCCTTCACTCTCATCAAACGTCTGCAGTCCGACTGGAGGAATGTGGTACATAG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139790.8
CDS-3UTR GCA 90 bp GTGTGTGTGTGTGCTTGTATATATGTGTATGTATATGTGTGTACGCATGTCTGTAGCATGTACACATCCTaGAGCCGCATCAGGGCCCTT +
Preference number: 4 (lower is better)
Translates to: VCVCACIYVYVYVCTHVCSMYTS*SRIRAL
Trigger: AAGGGCCCTGATGCGGCTGCAGGATGTGTACATGCT...ACAGACATGCGTACACACATATACATACACATATATACAAGCACACACACACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR GCA 90 bp GTGTGTGTGTGTGCTTGTATATATGTGTATGTATATGTGTGTACGCATGTCTGTGTGAGAGAGAAGAGCTaGCTGGGACTGTACAGGTCG +
Preference number: 4 (lower is better)
Translates to: VCVCACIYVYVYVCTHVCVREKS*LGLYRS
Trigger: CGACCTGTACAGTCCCAGGCAGCTCTTCTCTCTCAC...ACAGACATGCGTACACACATATACATACACATATATACAAGCACACACACACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGCTTGTATATATGTGTATGTATATGTGTGTACGCATGTCTGTGCCACCTTGCCAACTTaGAAGCAGTCATCCGCTGTG +
Preference number: 4 (lower is better)
Translates to: VCVCACIYVYVYVCTHVCATLPT*KQSSAV
Trigger: CACAGCGGATGACTGCTTCCAAGTTGGCAAGGTGGC...ACAGACATGCGTACACACATATACATACACATATATACAAGCACACACACACAC
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGCTTGTATATATGTGTATGTATATGTGTGTACGCATGTCTGTCCTCCAGCCATGGGATaGCATGGTAGTAATCCCCTG +
Preference number: 4 (lower is better)
Translates to: VCVCACIYVYVYVCTHVCPPAMG*HGSNPL
Trigger: CAGGGGATTACTACCATGCCATCCCATGGCTGGAGG...ACAGACATGCGTACACACATATACATACACATATATACAAGCACACACACACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
3UTR CAA 72 bp TTAAGTCTCACAGCTGGAGTAGAAACAGATGCAAATTaGGGGGATAGGGGGCTTCCTAGTAAAGTCCTATCC +
Preference number: 4 (lower is better)
Translates to: LSLTAGVETDAN*GDRGLPSKVLS
Trigger: GGATAGGACTTTACTAGGAAGCCCCCTATCCCCCAAATTTGCATCTGTTTCTACTCCAGCTGTGAGACTTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
ENSMUST00000139790.8
CDS-3UTR GCA 90 bp GTGTGTGTGTGTGCTTGTATATATGTGTATGTATATGTGTGTACGCATGTCTGTCTGGAGCCACGGTTCTaGAAGCTCTCGGATTTTCTG +
Preference number: 4 (lower is better)
Translates to: VCVCACIYVYVYVCTHVCLEPRF*KLSDFL
Trigger: CAGAAAATCCGAGAGCTTGCAGAACCGTGGCTCCAG...ACAGACATGCGTACACACATATACATACACATATATACAAGCACACACACACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CCA 90 bp CAGCAGAAATCAGCCCCATTATTGTTTGCAGTGTGTGTGTGGGTATATGAGGATGAAACATTTCCTACCTaGAAACAGGCAAAGGCCAAG +
Preference number: 4 (lower is better)
Translates to: QQKSAPLLFAVCVWVYEDETFPT*KQAKAK
Trigger: CTTGGCCTTTGCCTGTTTCCAGGTAGGAAATGTTTC...ATCCTCATATACCCACACACACACTGCAAACAATAATGGGGCTGATTTCTGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGCTTGTATATATGTGTATGTATATGTGTGTACGCATGTCTGTCTCGGATGTTCTCAGTaGCCTCCAGACTATGTACCA +
Preference number: 4 (lower is better)
Translates to: VCVCACIYVYVYVCTHVCLGCSQ*PPDYVP
Trigger: TGGTACATAGTCTGGAGGCCACTGAGAACATCCGAG...ACAGACATGCGTACACACATATACATACACATATATACAAGCACACACACACAC
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057023.12
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGCTTGTATATATGTGTATGTATATGTGTGTACGCATGTCTGTAGCTTCCTCCAGCCATaGGATGGCATGGTAGTAATC +
Preference number: 4 (lower is better)
Translates to: VCVCACIYVYVYVCTHVCSFLQP*DGMVVI
Trigger: GATTACTACCATGCCATCCCATGGCTGGAGGAAGCT...ACAGACATGCGTACACACATATACATACACATATATACAAGCACACACACACAC
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGCTTGTATATATGTGTATGTATATGTGTGTACGCATGTCTGTGGTAGGGGCTGGAATTaGTCTCATAGGAGCAGTAGA +
Preference number: 4 (lower is better)
Translates to: VCVCACIYVYVYVCTHVCGRGWN*SHRSSR
Trigger: TCTACTGCTCCTATGAGACCAATTCCAGCCCCTACC...ACAGACATGCGTACACACATATACATACACATATATACAAGCACACACACACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS CCA 90 bp GTGTCCCCAGCAGCCTGCGCTCGGGCGCCAGGGCGCGCGCCACGCTaGTCAGCGCGGAGAACGTGTCCTCCCGCCCCGTGGCCGCCGCGG +
Preference number: 5 (lower is better)
Translates to: VSPAACARAPGRAPR*SARRTCPPAPWPPR
Trigger: CCGCGGCGGCCACGGGGCGGGAGGACACGTTCTCCGCGCTGACCAGCGTGGCGCGCGCCCTGGCGCCCGAGCGCAGGCTGCTGGGGACAC
80% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000139790.8
CDS GCA 90 bp GCGCCTCCTCGCCGCGCAGGTAGCGCCTCAGTGTCCCCAGCAGCCTaGGCTCGGGCGCCAGGGCGCGCGCCACGCTGGTCAGCGCGGAGA +
Preference number: 5 (lower is better)
Translates to: APPRRAGSASVSPAA*ARAPGRAPRWSARR
Trigger: TCTCCGCGCTGACCAGCGTGGCGCGCGCCCTGGCGCCCGAGCGCAGGCTGCTGGGGACACTGAGGCGCTACCTGCGCGGCGAGGAGGCGC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000139790.8
CDS-3UTR CAA 90 bp CAGGCAGCAGCCTTGCTGGAGGCCTTCCTTCAGGAGGGTCGGCTCCCCTCTGCCAAAGGCAGGAAGGTCTaGCTCTACCTTCTCATAGCC +
Preference number: 5 (lower is better)
Translates to: QAAALLEAFLQEGRLPSAKGRKV*LYLLIA
Trigger: GGCTATGAGAAGGTAGAGCAAGACCTTCCTGCCTTT...GGCAGAGGGGAGCCGACCCTCCTGAAGGAAGGCCTCCAGCAAGGCTGCTGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057023.12
CDS-3UTR CAA 90 bp GGATGGGGATGGAGGCCTCTGGGTCAGACACTCCTCCTGGGGCAGCAGCAGAAAGATGCGGTACTCCACTaGCAACTGCTTTTCCCCCGA +
Preference number: 5 (lower is better)
Translates to: GWGWRPLGQTLLLGQQQKDAVLH*QLLFPR
Trigger: TCGGGGGAAAAGCAGTTGCAAGTGGAGTACCGCATC...TTTCTGCTGCTGCCCCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCCATCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CAA 90 bp GATGGGGATGGAGGCCTCTGGGTCAGACACTCCTCCTGGGGCAGCAGCAGAAATTTGTTGGCCACCCACTaGTCTCCCACCAGCACAGGA +
Preference number: 5 (lower is better)
Translates to: DGDGGLWVRHSSWGSSRNLLATH*SPTSTG
Trigger: TCCTGTGCTGGTGGGAGACAAGTGGGTGGCCAACAA...ATTTCTGCTGCTGCCCCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CAA 90 bp GGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGAGTAGAAACAGCCGCATCAGGGCCCTaGCTGCTCCCTCGAGGTCCT +
Preference number: 5 (lower is better)
Translates to: GLFVLSIRLLSLTAGVETAASGP*LLPRGP
Trigger: AGGACCTCGAGGGAGCAGCAAGGGCCCTGATGCGGC...TGTTTCTACTCCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057023.12
CDS-3UTR CAA 90 bp GATGGGGATGGAGGCCTCTGGGTCAGACACTCCTCCTGGGGCAGCAGCAGAAATTTTAGCCAGGCACTTTaGCTGATGCGGTACTCCACT +
Preference number: 5 (lower is better)
Translates to: DGDGGLWVRHSSWGSSRNFSQAL*LMRYST
Trigger: AGTGGAGTACCGCATCAGCAAAAGTGCCTGGCTAAA...ATTTCTGCTGCTGCCCCAGGAGGAGTGTCTGACCCAGAGGCCTCCATCCCCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CAA 90 bp CGCCCTCTTAGGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGCAAGGGTCACCAGCATaGGATCAACCGTGTCCTTTA +
Preference number: 5 (lower is better)
Translates to: RPLRPLRLVHSTLKSHSWQGSPA*DQPCPL
Trigger: TAAAGGACACGGTTGATCCAATGCTGGTGACCCTTG...CCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCCTAAGAGGGCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CAA 90 bp GCCCTCTTAGGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGATTTAGCCAGGCACTTTaGCTGATGCGGTACTCCACT +
Preference number: 5 (lower is better)
Translates to: ALLGLFVLSIRLLSLTAGFSQAL*LMRYST
Trigger: AGTGGAGTACCGCATCAGCAAAAGTGCCTGGCTAAA...TCCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCCTAAGAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CAA 90 bp GCCCTCTTAGGCCTCTTCGTCTTGTCCATTCGACTCTTAAGTCTCACAGCTGGACAAGGGTCACCAGCATaGGATCAACCGTGTCCTTTA +
Preference number: 5 (lower is better)
Translates to: ALLGLFVLSIRLLSLTAGQGSPA*DQPCPL
Trigger: TAAAGGACACGGTTGATCCAATGCTGGTGACCCTTG...TCCAGCTGTGAGACTTAAGAGTCGAATGGACAAGACGAAGAGGCCTAAGAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CAA 90 bp CAGCAGAAATCAGCCCCATTATTGTTTGCAGTGTGTGTGTGGGTATATGAGGATGGCCACCTTGCCAACTaGGAAGCAGTCATCCGCTGT +
Preference number: 5 (lower is better)
Translates to: QQKSAPLLFAVCVWVYEDGHLAN*EAVIRC
Trigger: ACAGCGGATGACTGCTTCCAAGTTGGCAAGGTGGCC...ATCCTCATATACCCACACACACACTGCAAACAATAATGGGGCTGATTTCTGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CAA 90 bp GTGTGTGTGTGTGCTTGTATATATGTGTATGTATATGTGTGTACGCATGTCTGTGGCCACCTTGCCAACTaGGAAGCAGTCATCCGCTGT +
Preference number: 5 (lower is better)
Translates to: VCVCACIYVYVYVCTHVCGHLAN*EAVIRC
Trigger: ACAGCGGATGACTGCTTCCAAGTTGGCAAGGTGGCC...ACAGACATGCGTACACACATATACATACACATATATACAAGCACACACACACAC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3
CDS-3UTR CAA 90 bp GTGTGTGTGTGTGCTTGTATATATGTGTATGTATATGTGTGTACGCATGTCTGTTTGTTGGCCACCCACTaGTCTCCCACCAGCACAGGA +
Preference number: 5 (lower is better)
Translates to: VCVCACIYVYVYVCTHVCLLATH*SPTSTG
Trigger: TCCTGTGCTGGTGGGAGACAAGTGGGTGGCCAACAA...ACAGACATGCGTACACACATATACATACACATATATACAAGCACACACACACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057023.12
ENSMUST00000138465.3