Pregenerated sensors for OXT (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027301Ensembl transcript IDs: ENSMUST00000028764.6
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | GCAGTGGCCATGGGGAACGAAGGAAGCGCGCTAAAGGTATTCCCAGAAAGTGGGGGCAGCCATCCGGGCTaGAGCAGATGCCTGTGGCGG | + |
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Preference number: 4 (lower is better) Translates to: AVAMGNEGSALKVFPESGGSHPG*SRCLWR Trigger: CCGCCACAGGCATCTGCTGCAGCCCGGATGGCTGCC...CCCACTTTCTGGGAATACCTTTAGCGCGCTTCCTTCGTTCCCCATGGCCACTGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028764.6 |
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| CDS-3UTR GCA 90 bp | GGCAGTGGCCATGGGGAACGAAGGAAGCGCGCTAAAGGTATTCCCAGAAAGTGGCCAGCACAGCCCTCTTaGCGCCCAGGGGGCAGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: GSGHGERRKRAKGIPRKWPAQPS*RPGGSS Trigger: AGAACTGCCCCCTGGGCGGCAAGAGGGCTGTGCTGG...CCACTTTCTGGGAATACCTTTAGCGCGCTTCCTTCGTTCCCCATGGCCACTGCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028764.6 |
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| CDS-3UTR CAA 90 bp | TCTGGCAGTGGCCATGGGGAACGAAGGAAGCGCGCTAAAGGTATTCCCAGAAAGTCCAGCACAGCCCTCTaGCCGCCCAGGGGGCAGTTC | + |
|
Preference number: 5 (lower is better) Translates to: SGSGHGERRKRAKGIPRKSSTAL*PPRGQF Trigger: GAACTGCCCCCTGGGCGGCAAGAGGGCTGTGCTGGA...CTTTCTGGGAATACCTTTAGCGCGCTTCCTTCGTTCCCCATGGCCACTGCCAGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028764.6 |
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| CDS GCA 72 bp | CCGAGAAGGCAGACTCAGGGTCGCAGGCGGGGTCTGTaGGGCAGCCATCCGGGCTGCAGCAGATGCCTGTGG | + |
|
Preference number: 6 (lower is better) Translates to: PRRQTQGRRRGL*GSHPGCSRCLW Trigger: CCACAGGCATCTGCTGCAGCCCGGATGGCTGCCGCACAGACCCCGCCTGCGACCCTGAGTCTGCCTTCTCGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028764.6 |
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