RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OXR1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022307

Ensembl transcript IDs: ENSMUST00000022918.15, ENSMUST00000090095.13, ENSMUST00000090096.11, ENSMUST00000110297.10, ENSMUST00000166917.3, ENSMUST00000170127.9, ENSMUST00000179393.8, ENSMUST00000229769.2, ENSMUST00000229836.2, ENSMUST00000230127.2, ENSMUST00000230131.2, ENSMUST00000230203.2, ENSMUST00000230778.2, ENSMUST00000231215.2

Found 530 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCTCTATTCAGTGATGAAAACATGCGCCCAAACCTGCAGACTGTGTaGGCTGTGGTCTATGCCAATCAGACTGCCCCTCCAATTTCATTC +
Preference number: 1 (lower is better)
Translates to: PLFSDENMRPNLQTV*AVVYANQTAPPISF
Trigger: GAATGAAATTGGAGGGGCAGTCTGATTGGCATAGACCACAGCGCACACAGTCTGCAGGTTTGGGCGCATGTTTTCATCACTGAATAGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR GCA 90 bp TCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATaGGCCCAAACCTGCAGACTGTGTGCGCTGTGGTCTATGCCAATC +
Preference number: 1 (lower is better)
Translates to: SHSPLSILLYSVMKT*AQTCRLCALWSMPI
Trigger: GATTGGCATAGACCACAGCGCACACAGTCTGCAGGTTTGGGCGCATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR CCA 90 bp GTGCTGACAAATTCCACCCGCTGTTACACTACTGGATCCCACTACTaGATCCCAGGCCATGGTGTAAACAAAAGAACTCTGGGACAGAAA +
Preference number: 1 (lower is better)
Translates to: VLTNSTRCYTTGSHY*IPGHGVNKRTLGQK
Trigger: TTTCTGTCCCAGAGTTCTTTTGTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGTGGAATTTGTCAGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR CCA 90 bp CAAATGCTGCACTGTGCTGACAAATTCCACCCGCTGTTACACTACTaGATCCCACTACTGGATCCCAGGCCATGGTGTAAACAAAAGAAC +
Preference number: 1 (lower is better)
Translates to: QMLHCADKFHPLLHY*IPLLDPRPWCKQKN
Trigger: GTTCTTTTGTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGTGGAATTTGTCAGCACAGTGCAGCATTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR TCA 90 bp GTCCTTTTTGTAGTTGGAATCCATTACAGGATGTTTAAAGTTTTGTaGTTTAGTCACCTCCACAAAGACAATAATACTGCTGTGGAAGAC +
Preference number: 1 (lower is better)
Translates to: VLFVVGIHYRMFKVL*FSHLHKDNNTAVED
Trigger: GTCTTCCACAGCAGTATTATTGTCTTTGTGGAGGTGACTAAATCACAAAACTTTAAACATCCTGTAATGGATTCCAACTACAAAAAGGAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR TCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTAATGCTGCACTGTGCTaGCAAATTCCACCCGCTGTT +
Preference number: 2 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRNAALC*QIPPAV
Trigger: AACAGCGGGTGGAATTTGTCAGCACAGTGCAGCATT...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR TCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCAATGCTGCACTGTGCTaGCAAATTCCACCCGCTGTT +
Preference number: 2 (lower is better)
Translates to: WGSWYATRLNKRTVKQCINAALC*QIPPAV
Trigger: AACAGCGGGTGGAATTTGTCAGCACAGTGCAGCATT...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR GCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCAACCTGCAGACTGTGTaGGCTGTGGTCTATGCCAAT +
Preference number: 2 (lower is better)
Translates to: WGSWYATRLNKRTVKQCINLQTV*AVVYAN
Trigger: ATTGGCATAGACCACAGCGCACACAGTCTGCAGGTT...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR GCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTAACCTGCAGACTGTGTaGGCTGTGGTCTATGCCAAT +
Preference number: 2 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRNLQTV*AVVYAN
Trigger: ATTGGCATAGACCACAGCGCACACAGTCTGCAGGTT...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR GCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTTCAGTGATGAAAACATaGGCCCAAACCTGCAGACTG +
Preference number: 2 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRSVMKT*AQTCRL
Trigger: CAGTCTGCAGGTTTGGGCGCATGTTTTCATCACTGA...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR GCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCTCAGTGATGAAAACATaGGCCCAAACCTGCAGACTG +
Preference number: 2 (lower is better)
Translates to: WGSWYATRLNKRTVKQCISVMKT*AQTCRL
Trigger: CAGTCTGCAGGTTTGGGCGCATGTTTTCATCACTGA...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR TCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTAATGCTGCACTGTGCTaGCAAATTCCACCCGCTGTT +
Preference number: 2 (lower is better)
Translates to: LNYSIVYYSHCPFIRADANAALC*QIPPAV
Trigger: AACAGCGGGTGGAATTTGTCAGCACAGTGCAGCATT...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR GCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTAACCTGCAGACTGTGTaGGCTGTGGTCTATGCCAAT +
Preference number: 2 (lower is better)
Translates to: LNYSIVYYSHCPFIRADANLQTV*AVVYAN
Trigger: ATTGGCATAGACCACAGCGCACACAGTCTGCAGGTT...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR GCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCAAACCTGCAGACTGTGTaGGCTGTGGTCTATGCCAAT +
Preference number: 2 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLANLQTV*AVVYAN
Trigger: ATTGGCATAGACCACAGCGCACACAGTCTGCAGGTT...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR CCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTCTGGATCCCAGGCCATaGTGTAAACAAAAGAACTCT +
Preference number: 2 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRLDPRP*CKQKNS
Trigger: AGAGTTCTTTTGTTTACACCATGGCCTGGGATCCAG...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR TCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGAATGCTGCACTGTGCTaGCAAATTCCACCCGCTGTT +
Preference number: 2 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMNAALC*QIPPAV
Trigger: AACAGCGGGTGGAATTTGTCAGCACAGTGCAGCATT...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR TCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTGCTCTGAAATTTAACTaGCGAATTGTTGCCACATGG +
Preference number: 2 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRALKFN*RIVATW
Trigger: CCATGTGGCAACAATTCGTCAGTTAAATTTCAGAGC...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR GCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGAACCTGCAGACTGTGTaGGCTGTGGTCTATGCCAAT +
Preference number: 2 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMNLQTV*AVVYAN
Trigger: ATTGGCATAGACCACAGCGCACACAGTCTGCAGGTT...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR GCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGTCAGTGATGAAAACATaGGCCCAAACCTGCAGACTG +
Preference number: 2 (lower is better)
Translates to: RIVATWLIVGFLQERIQLSVMKT*AQTCRL
Trigger: CAGTCTGCAGGTTTGGGCGCATGTTTTCATCACTGA...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR GCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTGTCTACTACAGTCACTaGCCTTTTATAAGAGCAGAT +
Preference number: 2 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRVYYSH*PFIRAD
Trigger: ATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGAC...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR CCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCACTGGATCCCAGGCCATaGTGTAAACAAAAGAACTCT +
Preference number: 2 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLALDPRP*CKQKNS
Trigger: AGAGTTCTTTTGTTTACACCATGGCCTGGGATCCAG...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR CCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTCTGGATCCCAGGCCATaGTGTAAACAAAAGAACTCT +
Preference number: 2 (lower is better)
Translates to: LNYSIVYYSHCPFIRADALDPRP*CKQKNS
Trigger: AGAGTTCTTTTGTTTACACCATGGCCTGGGATCCAG...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR CCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTCGAATTGTTGCCACATaGCTTATTGTTGGTTTCCTA +
Preference number: 2 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRRIVAT*LIVGFL
Trigger: TAGGAAACCAACAATAAGCCATGTGGCAACAATTCG...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR TCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTAGATTAAAAACAAGTTaGACAGAGCACCATCCAGTT +
Preference number: 2 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRRLKTS*TEHHPV
Trigger: AACTGGATGGTGCTCTGTTCAACTTGTTTTTAATCT...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR TCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTACTAGAAGAGGTCTATaGAGCATGTATTATTTTGGC +
Preference number: 2 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRTRRGL*SMYYFG
Trigger: GCCAAAATAATACATGCTTCATAGACCTCTTCTAGT...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR TCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCACTAGAAGAGGTCTATaGAGCATGTATTATTTTGGC +
Preference number: 2 (lower is better)
Translates to: WGSWYATRLNKRTVKQCITRRGL*SMYYFG
Trigger: GCCAAAATAATACATGCTTCATAGACCTCTTCTAGT...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR CCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGCTGGATCCCAGGCCATaGTGTAAACAAAAGAACTCT +
Preference number: 2 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMLDPRP*CKQKNS
Trigger: AGAGTTCTTTTGTTTACACCATGGCCTGGGATCCAG...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR GCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCCTCCAAAATTATAGTTaGAGTAAATGGCCAAACAGA +
Preference number: 2 (lower is better)
Translates to: WGSWYATRLNKRTVKQCILQNYS*SKWPNR
Trigger: TCTGTTTGGCCATTTACTGCAACTATAATTTTGGAG...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR GCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCAGTCTACTACAGTCACTaGCCTTTTATAAGAGCAGAT +
Preference number: 2 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLAVYYSH*PFIRAD
Trigger: ATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGAC...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR CCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCTATAGTTGCAGTAAATaGCCAAACAGACTGACTTTA +
Preference number: 2 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIYSCSK*PNRLTL
Trigger: TAAAGTCAGTCTGTTTGGCCATTTACTGCAACTATA...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR CCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTTATAGTTGCAGTAAATaGCCAAACAGACTGACTTTA +
Preference number: 2 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRYSCSK*PNRLTL
Trigger: TAAAGTCAGTCTGTTTGGCCATTTACTGCAACTATA...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR CCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTAAAACAAAAATGTCTTaGGGTAGTTGGTATGCAACA +
Preference number: 2 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRKTKMS*GSWYAT
Trigger: TGTTGCATACCAACTACCCCAAGACATTTTTGTTTT...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR CAA 90 bp CTACAAGAAAGAATACAATTGCTAGTTTATTCTACCTTTTCGTTTTaGAGGCCACTTGACAGTAAGCTTGCACATTCACCAAGTCTACTG +
Preference number: 2 (lower is better)
Translates to: LQERIQLLVYSTFSF*RPLDSKLAHSPSLL
Trigger: CAGTAGACTTGGTGAATGTGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAATTGTATTCTTTCTTGTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR GCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCAATGCCCCGAGTACACTaGTCTATAAAAAGAATCAAT +
Preference number: 2 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLAMPRVH*SIKRIN
Trigger: ATTGATTCTTTTTATAGAGCAGTGTACTCGGGGCAT...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR TCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGACTAGAAGAGGTCTATaGAGCATGTATTATTTTGGC +
Preference number: 2 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMTRRGL*SMYYFG
Trigger: GCCAAAATAATACATGCTTCATAGACCTCTTCTAGT...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR TCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGACTAGAAGAGGTCTATaGAGCATGTATTATTTTGGC +
Preference number: 2 (lower is better)
Translates to: RIVATWLIVGFLQERIQLTRRGL*SMYYFG
Trigger: GCCAAAATAATACATGCTTCATAGACCTCTTCTAGT...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR GCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTCTCCAAAATTATAGTTaGAGTAAATGGCCAAACAGA +
Preference number: 2 (lower is better)
Translates to: LNYSIVYYSHCPFIRADALQNYS*SKWPNR
Trigger: TCTGTTTGGCCATTTACTGCAACTATAATTTTGGAG...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR CCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCATATAGTTGCAGTAAATaGCCAAACAGACTGACTTTA +
Preference number: 2 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLAYSCSK*PNRLTL
Trigger: TAAAGTCAGTCTGTTTGGCCATTTACTGCAACTATA...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR CCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTTATAGTTGCAGTAAATaGCCAAACAGACTGACTTTA +
Preference number: 2 (lower is better)
Translates to: LNYSIVYYSHCPFIRADAYSCSK*PNRLTL
Trigger: TAAAGTCAGTCTGTTTGGCCATTTACTGCAACTATA...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR CCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTAAAACAAAAATGTCTTaGGGTAGTTGGTATGCAACA +
Preference number: 2 (lower is better)
Translates to: LNYSIVYYSHCPFIRADAKTKMS*GSWYAT
Trigger: TGTTGCATACCAACTACCCCAAGACATTTTTGTTTT...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR CCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCAAAAACAAAAATGTCTTaGGGTAGTTGGTATGCAACA +
Preference number: 2 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLAKTKMS*GSWYAT
Trigger: TGTTGCATACCAACTACCCCAAGACATTTTTGTTTT...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR GCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGCTCCAAAATTATAGTTaGAGTAAATGGCCAAACAGA +
Preference number: 2 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMLQNYS*SKWPNR
Trigger: TCTGTTTGGCCATTTACTGCAACTATAATTTTGGAG...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR GCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGCTCCAAAATTATAGTTaGAGTAAATGGCCAAACAGA +
Preference number: 2 (lower is better)
Translates to: RIVATWLIVGFLQERIQLLQNYS*SKWPNR
Trigger: TCTGTTTGGCCATTTACTGCAACTATAATTTTGGAG...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR CCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGTATAGTTGCAGTAAATaGCCAAACAGACTGACTTTA +
Preference number: 2 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMYSCSK*PNRLTL
Trigger: TAAAGTCAGTCTGTTTGGCCATTTACTGCAACTATA...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR TCA 72 bp GGTGGCGGCCTCTATGATCCAAATGCTGCACTGTGCTaGCAAATTCCACCCGCTGTTACACTACTGGATCCC +
Preference number: 3 (lower is better)
Translates to: GGGLYDPNAALC*QIPPAVTLLDP
Trigger: GGGATCCAGTAGTGTAACAGCGGGTGGAATTTGTCAGCACAGTGCAGCATTTGGATCATAGAGGCCGCCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR CAA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACTTTGTCCATTCAGGTTaGGGCCGATGTCCTGCTACA +
Preference number: 3 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNFVHSG*GRCPAT
Trigger: TGTAGCAGGACATCGGCCCAAACCTGAATGGACAAA...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR GCA 72 bp GCGCCCAAACCTGCAGACTGTGTGCGCTGTGGTCTATaGCAATCAGACTGCCCCTCCAATTTCATTCTTAAA +
Preference number: 3 (lower is better)
Translates to: APKPADCVRCGL*QSDCPSNFILK
Trigger: TTTAAGAATGAAATTGGAGGGGCAGTCTGATTGGCATAGACCACAGCGCACACAGTCTGCAGGTTTGGGCGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR CCA 72 bp CACTGTGCTGACAAATTCCACCCGCTGTTACACTACTaGATCCCACTACTGGATCCCAGGCCATGGTGTAAA +
Preference number: 3 (lower is better)
Translates to: HCADKFHPLLHY*IPLLDPRPWCK
Trigger: TTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGTGGAATTTGTCAGCACAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR CCA 72 bp AAAACATGCGCCCAAACCTGCAGACTGTGTGCGCTGTaGTCTATGCCAATCAGACTGCCCCTCCAATTTCAT +
Preference number: 3 (lower is better)
Translates to: KTCAQTCRLCAL*SMPIRLPLQFH
Trigger: ATGAAATTGGAGGGGCAGTCTGATTGGCATAGACCACAGCGCACACAGTCTGCAGGTTTGGGCGCATGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR GCA 72 bp CTCCTCTATTCAGTGATGAAAACATGCGCCCAAACCTaGAGACTGTGTGCGCTGTGGTCTATGCCAATCAGA +
Preference number: 3 (lower is better)
Translates to: LLYSVMKTCAQT*RLCALWSMPIR
Trigger: TCTGATTGGCATAGACCACAGCGCACACAGTCTGCAGGTTTGGGCGCATGTTTTCATCACTGAATAGAGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR GCA 72 bp CCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATaGGCCCAAACCTGCAGACTGTGTGCGCTGTGGTCT +
Preference number: 3 (lower is better)
Translates to: PLSILLYSVMKT*AQTCRLCALWS
Trigger: AGACCACAGCGCACACAGTCTGCAGGTTTGGGCGCATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR CAA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTTTTGTCCATTCAGGTTaGGGCCGATGTCCTGCTACA +
Preference number: 3 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRFVHSG*GRCPAT
Trigger: TGTAGCAGGACATCGGCCCAAACCTGAATGGACAAA...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR CAA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCTTCCAAACGATGCGTTaGTCCATTCAGGTTTGGGCC +
Preference number: 3 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIFQTMR*SIQVWA
Trigger: GGCCCAAACCTGAATGGACAAACGCATCGTTTGGAA...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR CAA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCATTTGTCCATTCAGGTTaGGGCCGATGTCCTGCTACA +
Preference number: 3 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLAFVHSG*GRCPAT
Trigger: TGTAGCAGGACATCGGCCCAAACCTGAATGGACAAA...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR CAA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTTTTGTCCATTCAGGTTaGGGCCGATGTCCTGCTACA +
Preference number: 3 (lower is better)
Translates to: LNYSIVYYSHCPFIRADAFVHSG*GRCPAT
Trigger: TGTAGCAGGACATCGGCCCAAACCTGAATGGACAAA...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR CAA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCATTCCAAACGATGCGTTaGTCCATTCAGGTTTGGGCC +
Preference number: 3 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLAFQTMR*SIQVWA
Trigger: GGCCCAAACCTGAATGGACAAACGCATCGTTTGGAA...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR CAA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTCACTTGACAGTAAGCTaGCACATTCACCAAGTCTAC +
Preference number: 3 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRHLTVS*HIHQVY
Trigger: GTAGACTTGGTGAATGTGCAAGCTTACTGTCAAGTG...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR CAA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGTTTGTCCATTCAGGTTaGGGCCGATGTCCTGCTACA +
Preference number: 3 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMFVHSG*GRCPAT
Trigger: TGTAGCAGGACATCGGCCCAAACCTGAATGGACAAA...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR CAA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGTTCCAAACGATGCGTTaGTCCATTCAGGTTTGGGCC +
Preference number: 3 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMFQTMR*SIQVWA
Trigger: GGCCCAAACCTGAATGGACAAACGCATCGTTTGGAA...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR TCA 72 bp CACTTGACAGTAAGCTTGCACATTCACCAAGTCTACTaGATTACAGTATTGTCTACTACAGTCACTGCCCTT +
Preference number: 3 (lower is better)
Translates to: HLTVSLHIHQVY*ITVLSTTVTAL
Trigger: AAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAGTAGACTTGGTGAATGTGCAAGCTTACTGTCAAGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR CAA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTTTAACTGACGAATTGTaGCCACATGGCTTATTGTTG +
Preference number: 3 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRLTDEL*PHGLLL
Trigger: CAACAATAAGCCATGTGGCAACAATTCGTCAGTTAA...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR-3UTR CAA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGCACTTGACAGTAAGCTaGCACATTCACCAAGTCTAC +
Preference number: 3 (lower is better)
Translates to: RIVATWLIVGFLQERIQLHLTVS*HIHQVY
Trigger: GTAGACTTGGTGAATGTGCAAGCTTACTGTCAAGTG...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
3UTR CCA 72 bp GATTTAGTCACCTCCACAAAGACAATAATACTGCTGTaGAAGACTAATAGGAAGGGTACATTTATTTACAGT +
Preference number: 3 (lower is better)
Translates to: DLVTSTKTIILL*KTNRKGTFIYS
Trigger: ACTGTAAATAAATGTACCCTTCCTATTAGTCTTCCACAGCAGTATTATTGTCTTTGTGGAGGTGACTAAATC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACCTCCCACTCCCTGGCTaGTGCTTCACCAGCAGGGGC +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNLPLPG*CFTSRG
Trigger: GCCCCTGCTGGTGAAGCAGCAGCCAGGGAGTGGGAG...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACGGCCGCTCTTGCCGGTaGACGTGGTCAGGTAGTCCA +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNGRSCR*TWSGSP
Trigger: TGGACTACCTGACCACGTTCACCGGCAAGAGCGGCC...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170127.9
CDS-3UTR GCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACACGCGCTCTCGGGTCTaGGTCCTCAGCAGAGACTCC +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNTRSRV*VLSRDS
Trigger: GGAGTCTCTGCTGAGGACGCAGACCCGAGAGCGCGT...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACGGAGCCCTCTCCATGTaGGTCTGCTGCTGCGCTGCT +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNGALSM*VCCCAA
Trigger: AGCAGCGCAGCAGCAGACGCACATGGAGAGGGCTCC...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACGAGGGCTTACAGGGCTaGGGGATGGGGAACTCTCAA +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNEGLQG*GMGNSQ
Trigger: TTGAGAGTTCCCCATCCCTCAGCCCTGTAAGCCCTC...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACTGCTCCTGGGAGCAGTaGTGGCACTGTCGTTACCCT +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNCSWEQ*WHCRYP
Trigger: AGGGTAACGACAGTGCCAGCACTGCTCCCAGGAGCA...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCTCCTCGAAGCGCACCTaGCGCGCTTCCCCGCCGCCG +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCISSKRT*RASPPP
Trigger: CGGCGGCGGGGAAGCGCGGCAGGTGCGCTTCGAGGA...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000170127.9
CDS-3UTR CCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACTCCTGGGAGCAGTGCTaGCACTGTCGTTACCCTGGT +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNSWEQC*HCRYPG
Trigger: ACCAGGGTAACGACAGTGCCAGCACTGCTCCCAGGA...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACAAATTCAGCCTCGGATaGCGTTGGCGACAGAGGGCT +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNKFSLG*RWRQRA
Trigger: AGCCCTCTGTCGCCAACGTCATCCGAGGCTGAATTT...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACTCCTGTCGCTTTCTTTaGATGGCAGGACCCCCTTCC +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNSCRFL*MAGPPS
Trigger: GGAAGGGGGTCCTGCCATTCAAAGAAAGCGACAGGA...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACCTCTCCATGTGCGTCTaGTGCTGCGCTGCTGTGTTT +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNLSMCV*CCAAVF
Trigger: AAACACAGCAGCGCAGCAGCAGACGCACATGGAGAG...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACTGCCTCTTGCTGCAGTaGACTTTCCTGGTGGGAAGA +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNCLLLQ*TFLVGR
Trigger: TCTTCCCACCAGGAAAGTTCACTGCAGCAAGAGGCA...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACCGGGGGTGCTTCTTTTaGATGGGCTACATCTGGAGT +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNRGCFF*MGYIWS
Trigger: ACTCCAGATGTAGCCCATCCAAAAGAAGCACCCCCG...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACGTCGCTTTCTTTGAATaGCAGGACCCCCTTCCTGAC +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNVAFFE*QDPLPD
Trigger: GTCAGGAAGGGGGTCCTGCCATTCAAAGAAAGCGAC...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACCTTCCATCGGACACATaGTGCCGTATTCCTCACAAC +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNLPSDT*CRIPHN
Trigger: GTTGTGAGGAATACGGCATCATGTGTCCGATGGAAG...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACTTTGTACATGGCAGCTaGCATCACCTCTTCCATCGG +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNFVHGS*HHLFHR
Trigger: CCGATGGAAGAGGTGATGTCAGCTGCCATGTACAAA...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACGGACTTCCATCTGACTaGCAGTCTGCACAGATTCTG +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNGLPSD*QSAQIL
Trigger: CAGAATCTGTGCAGACTGTCAGTCAGATGGAAGTCC...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACTCTTCACCTGCCTCTTaGTGCAGTGAACTTTCCTGG +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNSSPAS*CSELSW
Trigger: CCAGGAAAGTTCACTGCAGCAAGAGGCAGGTGAAGA...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTCTCCCACTCCCTGGCTaGTGCTTCACCAGCAGGGGC +
Preference number: 4 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRLPLPG*CFTSRG
Trigger: GCCCCTGCTGGTGAAGCAGCAGCCAGGGAGTGGGAG...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACGCAGTAAGAGTTCACTaGGGTCGCTTAGGTTTGGTC +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNAVRVH*GRLGLV
Trigger: GACCAAACCTAAGCGACCCCAGTGAACTCTTACTGC...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACGGGCCTGAGACTTCTTaGAGGCTTTCTGTAGCTTTA +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNGPETS*RLSVAL
Trigger: TAAAGCTACAGAAAGCCTTCAAGAAGTCTCAGGCCC...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACTGGAGCAACCTGCTTTaGGTTGATGTCTTCCCTTGT +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNWSNLL*VDVFPC
Trigger: ACAAGGGAAGACATCAACTCAAAGCAGGTTGCTCCA...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCACGCGCTCTCGGGTCTaGGTCCTCAGCAGAGACTCC +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCITRSRV*VLSRDS
Trigger: GGAGTCTCTGCTGAGGACGCAGACCCGAGAGCGCGT...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCGGAGCCCTCTCCATGTaGGTCTGCTGCTGCGCTGCT +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIGALSM*VCCCAA
Trigger: AGCAGCGCAGCAGCAGACGCACATGGAGAGGGCTCC...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACGTTCCTTTAGGCTTCTaGAAAGACATCCTTCTCCCA +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNVPLGF*KDILLP
Trigger: TGGGAGAAGGATGTCTTTTCAGAAGCCTAAAGGAAC...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCAGAGAGACTCCTCGGTaGTCCTGGGAGCAGTGCTGG +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIRETPR*SWEQCW
Trigger: CCAGCACTGCTCCCAGGAGCACCGAGGAGTCTCTCT...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACGACCTTTTACTTCTGTaGTTTGTTCCTTTGGGCCTG +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNDLLLL*FVPLGL
Trigger: CAGGCCCAAAGGAACAAAGCACAGAAGTAAAAGGTC...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACCTTTGTGCATACTGTTaGATCGTAGCACTTGCTTGC +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNLCAYC*IVALAC
Trigger: GCAAGCAAGTGCTACGATGCAACAGTATGCACAAAG...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTCTCCCACTCCCTGGCTaGTGCTTCACCAGCAGGGGC +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADALPLPG*CFTSRG
Trigger: GCCCCTGCTGGTGAAGCAGCAGCCAGGGAGTGGGAG...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTACTCCTCGGTGCTCCTaGGAGCAGTGCTGGCACTGT +
Preference number: 4 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRTPRCS*EQCWHC
Trigger: ACAGTGCCAGCACTGCTCCCAGGAGCACCGAGGAGT...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCACTCCTCGGTGCTCCTaGGAGCAGTGCTGGCACTGT +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCITPRCS*EQCWHC
Trigger: ACAGTGCCAGCACTGCTCCCAGGAGCACCGAGGAGT...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACTGCAGTGAACTTTCCTaGTGGGAAGAATCCTGGTTA +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNCSELS*WEESWL
Trigger: TAACCAGGATTCTTCCCACCAGGAAAGTTCACTGCA...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACAAGAAGGCATACAAGTaGTCTGTCCTTTCTTGTGGC +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNKKAYK*SVLSCG
Trigger: GCCACAAGAAAGGACAGACCACTTGTATGCCTTCTT...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTGAGGGCTTACAGGGCTaGGGGATGGGGAACTCTCAA +
Preference number: 4 (lower is better)
Translates to: HYYLTCNESFTQTRKRCREGLQG*GMGNSQ
Trigger: TTGAGAGTTCCCCATCCCTCAGCCCTGTAAGCCCTC...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACGAATCCTGGTTATCCTaGCCTTTTACTTCTGTGCTT +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNESWLS*PFTSVL
Trigger: AAGCACAGAAGTAAAAGGTCAGGATAACCAGGATTC...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACATTTCTGGACTCCACTaGATGAAGAAGGCATACAAG +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNISGLH*MKKAYK
Trigger: CTTGTATGCCTTCTTCATTCAGTGGAGTCCAGAAAT...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CAATCTGATCAGGCAGTAAGAGTTCACTGGGGTCGCTTAGGTTTGGTCGGAAAGTGGAGCAACCTGCTTTaGGTTGATGTCTTCCCTTGT +
Preference number: 4 (lower is better)
Translates to: QSDQAVRVHWGRLGLVGKWSNLL*VDVFPC
Trigger: ACAAGGGAAGACATCAACTCAAAGCAGGTTGCTCCA...CTTTCCGACCAAACCTAAGCGACCCCAGTGAACTCTTACTGCCTGATCAGATTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231215.2
CDS-3UTR GCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCAACGCGCTCTCGGGTCTaGGTCCTCAGCAGAGACTCC +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLATRSRV*VLSRDS
Trigger: GGAGTCTCTGCTGAGGACGCAGACCCGAGAGCGCGT...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTTGCTCCTGGGAGCAGTaGTGGCACTGTCGTTACCCT +
Preference number: 4 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRCSWEQ*WHCRYP
Trigger: AGGGTAACGACAGTGCCAGCACTGCTCCCAGGAGCA...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTGGAGCCCTCTCCATGTaGGTCTGCTGCTGCGCTGCT +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADAGALSM*VCCCAA
Trigger: AGCAGCGCAGCAGCAGACGCACATGGAGAGGGCTCC...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGCTCCCACTCCCTGGCTaGTGCTTCACCAGCAGGGGC +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLLPLPG*CFTSRG
Trigger: GCCCCTGCTGGTGAAGCAGCAGCCAGGGAGTGGGAG...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAACTCCCACTCCCTGGCTaGTGCTTCACCAGCAGGGGC +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKLPLPG*CFTSRG
Trigger: GCCCCTGCTGGTGAAGCAGCAGCCAGGGAGTGGGAG...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR GCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTTGGGTGCCGGGGGCTTaGTGGCTTGTGGTGCTTGCT +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADAWVPGA*WLVVLA
Trigger: AGCAAGCACCACAAGCCAGCAAGCCCCCGGCACCCA...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGGATGGGGGTCTTGGGTaGCGGGGGCTTGCTGGCTTG +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMDGGLG*RGLAGL
Trigger: CAAGCCAGCAAGCCCCCGGCACCCAAGACCCCCATC...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGGATGGGGGTCTTGGGTaGCGGGGGCTTGCTGGCTTG +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLDGGLG*RGLAGL
Trigger: CAAGCCAGCAAGCCCCCGGCACCCAAGACCCCCATC...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCAGTGCCGGGGGCTTGCTaGCTTGTGGTGCTTGCTTCC +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLAVPGAC*LVVLAS
Trigger: GGAAGCAAGCACCACAAGCCAGCAAGCCCCCGGCAC...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACTCAGTTCACTTTTTCTaGAAGGATGCTTCTGGGTGT +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNSVHFF*KDASGC
Trigger: ACACCCAGAAGCATCCTTCCAGAAAAAGTGAACTGA...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
3UTR CAA 72 bp TTGAACATTCCAAACGATGCGTTTGTCCATTCAGGTTaGGGCCGATGTCCTGCTACAACCAAGAGCACTGTG +
Preference number: 4 (lower is better)
Translates to: LNIPNDAFVHSG*GRCPATTKSTV
Trigger: CACAGTGCTCTTGGTTGTAGCAGGACATCGGCCCAAACCTGAATGGACAAACGCATCGTTTGGAATGTTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCAAATTCAGCCTCGGATaGCGTTGGCGACAGAGGGCT +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIKFSLG*RWRQRA
Trigger: AGCCCTCTGTCGCCAACGTCATCCGAGGCTGAATTT...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTAAATTCAGCCTCGGATaGCGTTGGCGACAGAGGGCT +
Preference number: 4 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRKFSLG*RWRQRA
Trigger: AGCCCTCTGTCGCCAACGTCATCCGAGGCTGAATTT...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTTCCTGTCGCTTTCTTTaGATGGCAGGACCCCCTTCC +
Preference number: 4 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRSCRFL*MAGPPS
Trigger: GGAAGGGGGTCCTGCCATTCAAAGAAAGCGACAGGA...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACTTGGTTTTCCGACTCTaGGACATAGGAACTTATGTA +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNLVFRL*DIGTYV
Trigger: TACATAAGTTCCTATGTCTCAGAGTCGGAAAACCAA...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACGTAAGCTTTTCAATCTaGTCAGGCAGTAAGAGTTCA +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNVSFSI*SGSKSS
Trigger: TGAACTCTTACTGCCTGATCAGATTGAAAAGCTTAC...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGACGCGCTCTCGGGTCTaGGTCCTCAGCAGAGACTCC +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLTRSRV*VLSRDS
Trigger: GGAGTCTCTGCTGAGGACGCAGACCCGAGAGCGCGT...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAAACGCGCTCTCGGGTCTaGGTCCTCAGCAGAGACTCC +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKTRSRV*VLSRDS
Trigger: GGAGTCTCTGCTGAGGACGCAGACCCGAGAGCGCGT...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR GCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTAGAGAGACTCCTCGGTaGTCCTGGGAGCAGTGCTGG +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADARETPR*SWEQCW
Trigger: CCAGCACTGCTCCCAGGAGCACCGAGGAGTCTCTCT...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCAAGAGAGACTCCTCGGTaGTCCTGGGAGCAGTGCTGG +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLARETPR*SWEQCW
Trigger: CCAGCACTGCTCCCAGGAGCACCGAGGAGTCTCTCT...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCCTCTCCATGTGCGTCTaGTGCTGCGCTGCTGTGTTT +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCILSMCV*CCAAVF
Trigger: AAACACAGCAGCGCAGCAGCAGACGCACATGGAGAG...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGGGAGCCCTCTCCATGTaGGTCTGCTGCTGCGCTGCT +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLGALSM*VCCCAA
Trigger: AGCAGCGCAGCAGCAGACGCACATGGAGAGGGCTCC...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGGGAGCCCTCTCCATGTaGGTCTGCTGCTGCGCTGCT +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMGALSM*VCCCAA
Trigger: AGCAGCGCAGCAGCAGACGCACATGGAGAGGGCTCC...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAAGGAGCCCTCTCCATGTaGGTCTGCTGCTGCGCTGCT +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKGALSM*VCCCAA
Trigger: AGCAGCGCAGCAGCAGACGCACATGGAGAGGGCTCC...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR GCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACCCTTTCTTGTGGCACTaGAAACCAATATTCGTGTTT +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNPFLWH*KPIFVF
Trigger: AAACACGAATATTGGTTTGCAGTGCCACAAGAAAGG...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGTGGGTGCCGGGGGCTTaGTGGCTTGTGGTGCTTGCT +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLWVPGA*WLVVLA
Trigger: AGCAAGCACCACAAGCCAGCAAGCCCCCGGCACCCA...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACCTACATCTGGAGTCGTaGTTTTATCAAATTCAGCCT +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNLHLES*FYQIQP
Trigger: AGGCTGAATTTGATAAAACCACGACTCCAGATGTAG...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTACTCCTCGGTGCTCCTaGGAGCAGTGCTGGCACTGT +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADATPRCS*EQCWHC
Trigger: ACAGTGCCAGCACTGCTCCCAGGAGCACCGAGGAGT...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGGTGCCGGGGGCTTGCTaGCTTGTGGTGCTTGCTTCC +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLVPGAC*LVVLAS
Trigger: GGAAGCAAGCACCACAAGCCAGCAAGCCCCCGGCAC...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CAATCTGATCAGGCAGTAAGAGTTCACTGGGGTCGCTTAGGTTTGGTCGGAAAGTTCAATACTGCTTCTTaGAAGTCCCAGTGTGAGCTG +
Preference number: 4 (lower is better)
Translates to: QSDQAVRVHWGRLGLVGKFNTAS*KSQCEL
Trigger: CAGCTCACACTGGGACTTCCAAGAAGCAGTATTGAA...CTTTCCGACCAAACCTAAGCGACCCCAGTGAACTCTTACTGCCTGATCAGATTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231215.2
CDS-3UTR TCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTGAGGGCTTACAGGGCTaGGGGATGGGGAACTCTCAA +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADAEGLQG*GMGNSQ
Trigger: TTGAGAGTTCCCCATCCCTCAGCCCTGTAAGCCCTC...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTTGCCTCTTGCTGCAGTaGACTTTCCTGGTGGGAAGA +
Preference number: 4 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRCLLLQ*TFLVGR
Trigger: TCTTCCCACCAGGAAAGTTCACTGCAGCAAGAGGCA...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCTGCCTCTTGCTGCAGTaGACTTTCCTGGTGGGAAGA +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCICLLLQ*TFLVGR
Trigger: TCTTCCCACCAGGAAAGTTCACTGCAGCAAGAGGCA...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCAGCATCGATCCTGCGGTaGTACTCAGCCACCGACACT +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLAASILR*YSATDT
Trigger: AGTGTCGGTGGCTGAGTATCACCGCAGGATCGATGC...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022918.15
ENSMUST00000110297.10
CDS-3UTR GCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACCAAATTTCAGGGCTATaGTATTCAAAGAATCCCTTG +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNQISGL*YSKNPL
Trigger: CAAGGGATTCTTTGAATAGCATAGCCCTGAAATTTG...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCATGCTCCTGGGAGCAGTaGTGGCACTGTCGTTACCCT +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLACSWEQ*WHCRYP
Trigger: AGGGTAACGACAGTGCCAGCACTGCTCCCAGGAGCA...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGAGAGAGACTCCTCGGTaGTCCTGGGAGCAGTGCTGG +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMRETPR*SWEQCW
Trigger: CCAGCACTGCTCCCAGGAGCACCGAGGAGTCTCTCT...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGAGAGAGACTCCTCGGTaGTCCTGGGAGCAGTGCTGG +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLRETPR*SWEQCW
Trigger: CCAGCACTGCTCCCAGGAGCACCGAGGAGTCTCTCT...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAAAGAGAGACTCCTCGGTaGTCCTGGGAGCAGTGCTGG +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKRETPR*SWEQCW
Trigger: CCAGCACTGCTCCCAGGAGCACCGAGGAGTCTCTCT...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR GCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTTTCAGGCTCCAGGTCTaGTTTTGCTGGAGCAACCTG +
Preference number: 4 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRFRLQV*FCWSNL
Trigger: CAGGTTGCTCCAGCAAAAGCAGACCTGGAGCCTGAA...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CAATCTGATCAGGCAGTAAGAGTTCACTGGGGTCGCTTAGGTTTGGTCGGAAAGTGCACATTTCAATACTaGTTCTTGGAAGTCCCAGTG +
Preference number: 4 (lower is better)
Translates to: QSDQAVRVHWGRLGLVGKCTFQY*FLEVPV
Trigger: CACTGGGACTTCCAAGAAGCAGTATTGAAATGTGCA...CTTTCCGACCAAACCTAAGCGACCCCAGTGAACTCTTACTGCCTGATCAGATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231215.2
CDS-3UTR GCA 90 bp GCTTTTCAATCTGATCAGGCAGTAAGAGTTCACTGGGGTCGCTTAGGTTTGGTCGTAGTAATAGAGTCCTaGAGCCCTTATCTCTGTCAC +
Preference number: 4 (lower is better)
Translates to: AFQSDQAVRVHWGRLGLVVVIES*SPYLCH
Trigger: GTGACAGAGATAAGGGCTGCAGGACTCTATTACTAC...GACCAAACCTAAGCGACCCCAGTGAACTCTTACTGCCTGATCAGATTGAAAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231215.2
CDS-3UTR CCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTCGGGGGTGCTTCTTTTaGATGGGCTACATCTGGAGT +
Preference number: 4 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRRGCFF*MGYIWS
Trigger: ACTCCAGATGTAGCCCATCCAAAAGAAGCACCCCCG...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTGTCGCTTTCTTTGAATaGCAGGACCCCCTTCCTGAC +
Preference number: 4 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRVAFFE*QDPLPD
Trigger: GTCAGGAAGGGGGTCCTGCCATTCAAAGAAAGCGAC...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCGTCGCTTTCTTTGAATaGCAGGACCCCCTTCCTGAC +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIVAFFE*QDPLPD
Trigger: GTCAGGAAGGGGGTCCTGCCATTCAAAGAAAGCGAC...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCATCCTGGGAGCAGTGCTaGCACTGTCGTTACCCTGGT +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLASWEQC*HCRYPG
Trigger: ACCAGGGTAACGACAGTGCCAGCACTGCTCCCAGGA...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTTCCTGGGAGCAGTGCTaGCACTGTCGTTACCCTGGT +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADASWEQC*HCRYPG
Trigger: ACCAGGGTAACGACAGTGCCAGCACTGCTCCCAGGA...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGACTCCTCGGTGCTCCTaGGAGCAGTGCTGGCACTGT +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLTPRCS*EQCWHC
Trigger: ACAGTGCCAGCACTGCTCCCAGGAGCACCGAGGAGT...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAAACTCCTCGGTGCTCCTaGGAGCAGTGCTGGCACTGT +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKTPRCS*EQCWHC
Trigger: ACAGTGCCAGCACTGCTCCCAGGAGCACCGAGGAGT...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR CCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACTTCTGCATAGATTTCTaGACTCCACTGAATGAAGAA +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNFCIDF*TPLNEE
Trigger: TTCTTCATTCAGTGGAGTCCAGAAATCTATGCAGAA...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGGAGGGCTTACAGGGCTaGGGGATGGGGAACTCTCAA +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLEGLQG*GMGNSQ
Trigger: TTGAGAGTTCCCCATCCCTCAGCCCTGTAAGCCCTC...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAAGAGGGCTTACAGGGCTaGGGGATGGGGAACTCTCAA +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKEGLQG*GMGNSQ
Trigger: TTGAGAGTTCCCCATCCCTCAGCCCTGTAAGCCCTC...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR TCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTAAATTCAGCCTCGGATaGCGTTGGCGACAGAGGGCT +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADAKFSLG*RWRQRA
Trigger: AGCCCTCTGTCGCCAACGTCATCCGAGGCTGAATTT...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCTCACAACCGTTCTCTTaGACCAAGGGGTCTGTCTTG +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCISQPFS*TKGSVL
Trigger: CAAGACAGACCCCTTGGTTCAAGAGAACGGTTGTGA...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCCTTCCATCGGACACATaGTGCCGTATTCCTCACAAC +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCILPSDT*CRIPHN
Trigger: GTTGTGAGGAATACGGCATCATGTGTCCGATGGAAG...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCTTTGTACATGGCAGCTaGCATCACCTCTTCCATCGG +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIFVHGS*HHLFHR
Trigger: CCGATGGAAGAGGTGATGTCAGCTGCCATGTACAAA...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCATCCTGTCGCTTTCTTTaGATGGCAGGACCCCCTTCC +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLASCRFL*MAGPPS
Trigger: GGAAGGGGGTCCTGCCATTCAAAGAAAGCGACAGGA...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCGGACTTCCATCTGACTaGCAGTCTGCACAGATTCTG +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIGLPSD*QSAQIL
Trigger: CAGAATCTGTGCAGACTGTCAGTCAGATGGAAGTCC...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGGCATCGATCCTGCGGTaGTACTCAGCCACCGACACT +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMASILR*YSATDT
Trigger: AGTGTCGGTGGCTGAGTATCACCGCAGGATCGATGC...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022918.15
ENSMUST00000110297.10
CDS-3UTR TCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTTCTGTTCTTCTTCGATaGTGGGGGTCTTGGGTGCCG +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADASVLLR*WGSWVP
Trigger: CGGCACCCAAGACCCCCATCATCGAAGAAGAACAGA...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGTGCTCCTGGGAGCAGTaGTGGCACTGTCGTTACCCT +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMCSWEQ*WHCRYP
Trigger: AGGGTAACGACAGTGCCAGCACTGCTCCCAGGAGCA...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGTGCTCCTGGGAGCAGTaGTGGCACTGTCGTTACCCT +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLCSWEQ*WHCRYP
Trigger: AGGGTAACGACAGTGCCAGCACTGCTCCCAGGAGCA...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAATGCTCCTGGGAGCAGTaGTGGCACTGTCGTTACCCT +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKCSWEQ*WHCRYP
Trigger: AGGGTAACGACAGTGCCAGCACTGCTCCCAGGAGCA...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR GCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTTCTTCACCTGCCTCTTaGTGCAGTGAACTTTCCTGG +
Preference number: 4 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRSSPAS*CSELSW
Trigger: CCAGGAAAGTTCACTGCAGCAAGAGGCAGGTGAAGA...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCATCGTGTCCCTTTGCTaGTTGGCTTGCTGCATAGAG +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIIVSLC*LACCIE
Trigger: CTCTATGCAGCAAGCCAAGCAGCAAAGGGACACGAT...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTATCGTGTCCCTTTGCTaGTTGGCTTGCTGCATAGAG +
Preference number: 4 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRIVSLC*LACCIE
Trigger: CTCTATGCAGCAAGCCAAGCAGCAAAGGGACACGAT...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTATGTGCGTCTGCTGCTaGGCTGCTGTGTTTACTTTC +
Preference number: 4 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRMCVCC*AAVFTF
Trigger: GAAAGTAAACACAGCAGCGCAGCAGCAGACGCACAT...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCACTCTCCATGTGCGTCTaGTGCTGCGCTGCTGTGTTT +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLALSMCV*CCAAVF
Trigger: AAACACAGCAGCGCAGCAGCAGACGCACATGGAGAG...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACAACTTATGTAATCGATaGCTTCGCTTTTCCTTTAAC +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNNLCNR*LRFSFN
Trigger: GTTAAAGGAAAAGCGAAGGCATCGATTACATAAGTT...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACACTGAACAAGTTCATTaGGTGTGGTATCAAATTTCA +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNTEQVH*VWYQIS
Trigger: TGAAATTTGATACCACACCCAATGAACTTGTTCAGT...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGTCCTGGGAGCAGTGCTaGCACTGTCGTTACCCTGGT +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLSWEQC*HCRYPG
Trigger: ACCAGGGTAACGACAGTGCCAGCACTGCTCCCAGGA...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAATCCTGGGAGCAGTGCTaGCACTGTCGTTACCCTGGT +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKSWEQC*HCRYPG
Trigger: ACCAGGGTAACGACAGTGCCAGCACTGCTCCCAGGA...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR CCA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACAAAGACCTCAAATTCTaGGCAGAATGTGAAAACAAA +
Preference number: 4 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNKDLKF*AECENK
Trigger: TTTGTTTTCACATTCTGCCCAGAATTTGAGGTCTTT...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGAAATTCAGCCTCGGATaGCGTTGGCGACAGAGGGCT +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLKFSLG*RWRQRA
Trigger: AGCCCTCTGTCGCCAACGTCATCCGAGGCTGAATTT...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAAAAATTCAGCCTCGGATaGCGTTGGCGACAGAGGGCT +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKKFSLG*RWRQRA
Trigger: AGCCCTCTGTCGCCAACGTCATCCGAGGCTGAATTT...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
44% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR TCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGTCCTGTCGCTTTCTTTaGATGGCAGGACCCCCTTCC +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMSCRFL*MAGPPS
Trigger: GGAAGGGGGTCCTGCCATTCAAAGAAAGCGACAGGA...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAATCCTGTCGCTTTCTTTaGATGGCAGGACCCCCTTCC +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKSCRFL*MAGPPS
Trigger: GGAAGGGGGTCCTGCCATTCAAAGAAAGCGACAGGA...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR TCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTGGGCCTGAGACTTCTTaGAGGCTTTCTGTAGCTTTA +
Preference number: 4 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRGPETS*RLSVAL
Trigger: TAAAGCTACAGAAAGCCTTCAAGAAGTCTCAGGCCC...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCGGGCCTGAGACTTCTTaGAGGCTTTCTGTAGCTTTA +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIGPETS*RLSVAL
Trigger: TAAAGCTACAGAAAGCCTTCAAGAAGTCTCAGGCCC...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCTTGTTCCTTTGGGCCTaGGACTTCTTGAAGGCTTTC +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCILFLWA*DFLKAF
Trigger: GAAAGCCTTCAAGAAGTCTCAGGCCCAAAGGAACAA...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTTTGTTCCTTTGGGCCTaGGACTTCTTGAAGGCTTTC +
Preference number: 4 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRLFLWA*DFLKAF
Trigger: GAAAGCCTTCAAGAAGTCTCAGGCCCAAAGGAACAA...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTTGCCTCTTGCTGCAGTaGACTTTCCTGGTGGGAAGA +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADACLLLQ*TFLVGR
Trigger: TCTTCCCACCAGGAAAGTTCACTGCAGCAAGAGGCA...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTCTGGACTCCACTGAATaGAGAAGGCATACAAGTGGT +
Preference number: 4 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRLDSTE*RRHTSG
Trigger: ACCACTTGTATGCCTTCTTCATTCAGTGGAGTCCAG...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCTGGAGCAACCTGCTTTaGGTTGATGTCTTCCCTTGT +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIWSNLL*VDVFPC
Trigger: ACAAGGGAAGACATCAACTCAAAGCAGGTTGCTCCA...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGTCTGTTCTTCTTCGATaGTGGGGGTCTTGGGTGCCG +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLSVLLR*WGSWVP
Trigger: CGGCACCCAAGACCCCCATCATCGAAGAAGAACAGA...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCGAGTTTTCCAGAGTTTaGGCAGCTCCTCTACTTCTG +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIEFSRV*AAPLLL
Trigger: CAGAAGTAGAGGAGCTGCGCAAACTCTGGAAAACTC...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTGAGTTTTCCAGAGTTTaGGCAGCTCCTCTACTTCTG +
Preference number: 4 (lower is better)
Translates to: HYYLTCNESFTQTRKRCREFSRV*AAPLLL
Trigger: CAGAAGTAGAGGAGCTGCGCAAACTCTGGAAAACTC...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGCTCTCCATGTGCGTCTaGTGCTGCGCTGCTGTGTTT +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMLSMCV*CCAAVF
Trigger: AAACACAGCAGCGCAGCAGCAGACGCACATGGAGAG...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGCTCTCCATGTGCGTCTaGTGCTGCGCTGCTGTGTTT +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLLSMCV*CCAAVF
Trigger: AAACACAGCAGCGCAGCAGCAGACGCACATGGAGAG...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAACTCTCCATGTGCGTCTaGTGCTGCGCTGCTGTGTTT +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKLSMCV*CCAAVF
Trigger: AAACACAGCAGCGCAGCAGCAGACGCACATGGAGAG...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR GCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTTTAGAGCATCGATCCTaGGGTGATACTCAGCCACCG +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADALEHRS*GDTQPP
Trigger: CGGTGGCTGAGTATCACCGCAGGATCGATGCTCTAA...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022918.15
ENSMUST00000110297.10
CDS-3UTR GCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCGCCGTCTGCAGAGTGTaGGCAGTTCTTCAGTATTTA +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIAVCRV*AVLQYL
Trigger: TAAATACTGAAGAACTGCGCACACTCTGCAGACGGC...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022918.15
ENSMUST00000110297.10
CDS-3UTR GCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTTTCAGGCTCCAGGTCTaGTTTTGCTGGAGCAACCTG +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADAFRLQV*FCWSNL
Trigger: CAGGTTGCTCCAGCAAAAGCAGACCTGGAGCCTGAA...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCACGGGGGTGCTTCTTTTaGATGGGCTACATCTGGAGT +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLARGCFF*MGYIWS
Trigger: ACTCCAGATGTAGCCCATCCAAAAGAAGCACCCCCG...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTGTCGCTTTCTTTGAATaGCAGGACCCCCTTCCTGAC +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADAVAFFE*QDPLPD
Trigger: GTCAGGAAGGGGGTCCTGCCATTCAAAGAAAGCGAC...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCCTGGAAGGATGCTTCTaGGTGTTTGCTGAGTTGTTC +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCILEGCF*VFAELF
Trigger: GAACAACTCAGCAAACACCCAGAAGCATCCTTCCAG...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTCTGGAAGGATGCTTCTaGGTGTTTGCTGAGTTGTTC +
Preference number: 4 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRLEGCF*VFAELF
Trigger: GAACAACTCAGCAAACACCCAGAAGCATCCTTCCAG...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTTTCTTCTTCAGAAGTTaGAGACACAACTCTCGCAGG +
Preference number: 4 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRFFFRS*RHNSRR
Trigger: CCTGCGAGAGTTGTGTCTTCAACTTCTGAAGAAGAA...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCTTCTTCTTCAGAAGTTaGAGACACAACTCTCGCAGG +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIFFFRS*RHNSRR
Trigger: CCTGCGAGAGTTGTGTCTTCAACTTCTGAAGAAGAA...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTTCACAACCGTTCTCTTaGACCAAGGGGTCTGTCTTG +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADASQPFS*TKGSVL
Trigger: CAAGACAGACCCCTTGGTTCAAGAGAACGGTTGTGA...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTCTTCCATCGGACACATaGTGCCGTATTCCTCACAAC +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADALPSDT*CRIPHN
Trigger: GTTGTGAGGAATACGGCATCATGTGTCCGATGGAAG...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCACTTCCATCGGACACATaGTGCCGTATTCCTCACAAC +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLALPSDT*CRIPHN
Trigger: GTTGTGAGGAATACGGCATCATGTGTCCGATGGAAG...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTTTTGTACATGGCAGCTaGCATCACCTCTTCCATCGG +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADAFVHGS*HHLFHR
Trigger: CCGATGGAAGAGGTGATGTCAGCTGCCATGTACAAA...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTGGACTTCCATCTGACTaGCAGTCTGCACAGATTCTG +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADAGLPSD*QSAQIL
Trigger: CAGAATCTGTGCAGACTGTCAGTCAGATGGAAGTCC...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCAGGACTTCCATCTGACTaGCAGTCTGCACAGATTCTG +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLAGLPSD*QSAQIL
Trigger: CAGAATCTGTGCAGACTGTCAGTCAGATGGAAGTCC...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGTGCCTCTTGCTGCAGTaGACTTTCCTGGTGGGAAGA +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMCLLLQ*TFLVGR
Trigger: TCTTCCCACCAGGAAAGTTCACTGCAGCAAGAGGCA...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAATGCCTCTTGCTGCAGTaGACTTTCCTGGTGGGAAGA +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKCLLLQ*TFLVGR
Trigger: TCTTCCCACCAGGAAAGTTCACTGCAGCAAGAGGCA...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR GCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCGACCTTTTACTTCTGTaGTTTGTTCCTTTGGGCCTG +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIDLLLL*FVPLGL
Trigger: CAGGCCCAAAGGAACAAAGCACAGAAGTAAAAGGTC...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCATCTTCACCTGCCTCTTaGTGCAGTGAACTTTCCTGG +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLASSPAS*CSELSW
Trigger: CCAGGAAAGTTCACTGCAGCAAGAGGCAGGTGAAGA...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTATCGTGTCCCTTTGCTaGTTGGCTTGCTGCATAGAG +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADAIVSLC*LACCIE
Trigger: CTCTATGCAGCAAGCCAAGCAGCAAAGGGACACGAT...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCAATCGTGTCCCTTTGCTaGTTGGCTTGCTGCATAGAG +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLAIVSLC*LACCIE
Trigger: CTCTATGCAGCAAGCCAAGCAGCAAAGGGACACGAT...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTCGTCTGCTGCTGCGCTaGTGTGTTTACTTTCTCTCT +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADARLLLR*CVYFLS
Trigger: AGAGAGAAAGTAAACACAGCAGCGCAGCAGCAGACG...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCACGTCTGCTGCTGCGCTaGTGTGTTTACTTTCTCTCT +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLARLLLR*CVYFLS
Trigger: AGAGAGAAAGTAAACACAGCAGCGCAGCAGCAGACG...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCAATGTGCGTCTGCTGCTaGGCTGCTGTGTTTACTTTC +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLAMCVCC*AAVFTF
Trigger: GAAAGTAAACACAGCAGCGCAGCAGCAGACGCACAT...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTCTTTGTGCATACTGTTaGATCGTAGCACTTGCTTGC +
Preference number: 4 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRLCAYC*IVALAC
Trigger: GCAAGCAAGTGCTACGATGCAACAGTATGCACAAAG...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCCTTTGTGCATACTGTTaGATCGTAGCACTTGCTTGC +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCILCAYC*IVALAC
Trigger: GCAAGCAAGTGCTACGATGCAACAGTATGCACAAAG...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGTTAGAGCATCGATCCTaGGGTGATACTCAGCCACCG +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMLEHRS*GDTQPP
Trigger: CGGTGGCTGAGTATCACCGCAGGATCGATGCTCTAA...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022918.15
ENSMUST00000110297.10
CDS-3UTR GCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGTTCAGGCTCCAGGTCTaGTTTTGCTGGAGCAACCTG +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMFRLQV*FCWSNL
Trigger: CAGGTTGCTCCAGCAAAAGCAGACCTGGAGCCTGAA...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGTTCAGGCTCCAGGTCTaGTTTTGCTGGAGCAACCTG +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLFRLQV*FCWSNL
Trigger: CAGGTTGCTCCAGCAAAAGCAGACCTGGAGCCTGAA...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGCGGGGGTGCTTCTTTTaGATGGGCTACATCTGGAGT +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMRGCFF*MGYIWS
Trigger: ACTCCAGATGTAGCCCATCCAAAAGAAGCACCCCCG...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAACGGGGGTGCTTCTTTTaGATGGGCTACATCTGGAGT +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKRGCFF*MGYIWS
Trigger: ACTCCAGATGTAGCCCATCCAAAAGAAGCACCCCCG...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR CCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGGTCGCTTTCTTTGAATaGCAGGACCCCCTTCCTGAC +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLVAFFE*QDPLPD
Trigger: GTCAGGAAGGGGGTCCTGCCATTCAAAGAAAGCGAC...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAAGTCGCTTTCTTTGAATaGCAGGACCCCCTTCCTGAC +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKVAFFE*QDPLPD
Trigger: GTCAGGAAGGGGGTCCTGCCATTCAAAGAAAGCGAC...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR CCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTTGCAGTGAACTTTCCTaGTGGGAAGAATCCTGGTTA +
Preference number: 4 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRCSELS*WEESWL
Trigger: TAACCAGGATTCTTCCCACCAGGAAAGTTCACTGCA...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCTGCAGTGAACTTTCCTaGTGGGAAGAATCCTGGTTA +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCICSELS*WEESWL
Trigger: TAACCAGGATTCTTCCCACCAGGAAAGTTCACTGCA...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTAAGAAGGCATACAAGTaGTCTGTCCTTTCTTGTGGC +
Preference number: 4 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRKKAYK*SVLSCG
Trigger: GCCACAAGAAAGGACAGACCACTTGTATGCCTTCTT...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTGCAGTAAGAGTTCACTaGGGTCGCTTAGGTTTGGTC +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADAAVRVH*GRLGLV
Trigger: GACCAAACCTAAGCGACCCCAGTGAACTCTTACTGC...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGTCTAAGGTCTTCTTTTaGCCAGTGTCCGGTCCCTCG +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLSKVFF*PVSGPS
Trigger: CGAGGGACCGGACACTGGCCAAAAGAAGACCTTAGA...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170127.9
CDS-3UTR TCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGTCACAACCGTTCTCTTaGACCAAGGGGTCTGTCTTG +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLSQPFS*TKGSVL
Trigger: CAAGACAGACCCCTTGGTTCAAGAGAACGGTTGTGA...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGTCACAACCGTTCTCTTaGACCAAGGGGTCTGTCTTG +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMSQPFS*TKGSVL
Trigger: CAAGACAGACCCCTTGGTTCAAGAGAACGGTTGTGA...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAATCACAACCGTTCTCTTaGACCAAGGGGTCTGTCTTG +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKSQPFS*TKGSVL
Trigger: CAAGACAGACCCCTTGGTTCAAGAGAACGGTTGTGA...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR TCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGCTTCCATCGGACACATaGTGCCGTATTCCTCACAAC +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLLPSDT*CRIPHN
Trigger: GTTGTGAGGAATACGGCATCATGTGTCCGATGGAAG...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAACTTCCATCGGACACATaGTGCCGTATTCCTCACAAC +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKLPSDT*CRIPHN
Trigger: GTTGTGAGGAATACGGCATCATGTGTCCGATGGAAG...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR TCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGTTTGTACATGGCAGCTaGCATCACCTCTTCCATCGG +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLFVHGS*HHLFHR
Trigger: CCGATGGAAGAGGTGATGTCAGCTGCCATGTACAAA...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGTTTGTACATGGCAGCTaGCATCACCTCTTCCATCGG +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMFVHGS*HHLFHR
Trigger: CCGATGGAAGAGGTGATGTCAGCTGCCATGTACAAA...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAATTTGTACATGGCAGCTaGCATCACCTCTTCCATCGG +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKFVHGS*HHLFHR
Trigger: CCGATGGAAGAGGTGATGTCAGCTGCCATGTACAAA...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR TCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGGGACTTCCATCTGACTaGCAGTCTGCACAGATTCTG +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMGLPSD*QSAQIL
Trigger: CAGAATCTGTGCAGACTGTCAGTCAGATGGAAGTCC...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAAGGACTTCCATCTGACTaGCAGTCTGCACAGATTCTG +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKGLPSD*QSAQIL
Trigger: CAGAATCTGTGCAGACTGTCAGTCAGATGGAAGTCC...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR TCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTGGGCCTGAGACTTCTTaGAGGCTTTCTGTAGCTTTA +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADAGPETS*RLSVAL
Trigger: TAAAGCTACAGAAAGCCTTCAAGAAGTCTCAGGCCC...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTTTGTTCCTTTGGGCCTaGGACTTCTTGAAGGCTTTC +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADALFLWA*DFLKAF
Trigger: GAAAGCCTTCAAGAAGTCTCAGGCCCAAAGGAACAA...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCGAATCCTGGTTATCCTaGCCTTTTACTTCTGTGCTT +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIESWLS*PFTSVL
Trigger: AAGCACAGAAGTAAAAGGTCAGGATAACCAGGATTC...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCACTGGACTCCACTGAATaGAGAAGGCATACAAGTGGT +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLALDSTE*RRHTSG
Trigger: ACCACTTGTATGCCTTCTTCATTCAGTGGAGTCCAG...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTCTGGACTCCACTGAATaGAGAAGGCATACAAGTGGT +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADALDSTE*RRHTSG
Trigger: ACCACTTGTATGCCTTCTTCATTCAGTGGAGTCCAG...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCATTTCTGGACTCCACTaGATGAAGAAGGCATACAAG +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIISGLH*MKKAYK
Trigger: CTTGTATGCCTTCTTCATTCAGTGGAGTCCAGAAAT...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTTGGAGCAACCTGCTTTaGGTTGATGTCTTCCCTTGT +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADAWSNLL*VDVFPC
Trigger: ACAAGGGAAGACATCAACTCAAAGCAGGTTGCTCCA...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGTCTTCACCTGCCTCTTaGTGCAGTGAACTTTCCTGG +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLSSPAS*CSELSW
Trigger: CCAGGAAAGTTCACTGCAGCAAGAGGCAGGTGAAGA...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGTCTTCACCTGCCTCTTaGTGCAGTGAACTTTCCTGG +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMSSPAS*CSELSW
Trigger: CCAGGAAAGTTCACTGCAGCAAGAGGCAGGTGAAGA...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAATCTTCACCTGCCTCTTaGTGCAGTGAACTTTCCTGG +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKSSPAS*CSELSW
Trigger: CCAGGAAAGTTCACTGCAGCAAGAGGCAGGTGAAGA...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR GCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGATCGTGTCCCTTTGCTaGTTGGCTTGCTGCATAGAG +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLIVSLC*LACCIE
Trigger: CTCTATGCAGCAAGCCAAGCAGCAAAGGGACACGAT...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAAATCGTGTCCCTTTGCTaGTTGGCTTGCTGCATAGAG +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKIVSLC*LACCIE
Trigger: CTCTATGCAGCAAGCCAAGCAGCAAAGGGACACGAT...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR GCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGCGTCTGCTGCTGCGCTaGTGTGTTTACTTTCTCTCT +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMRLLLR*CVYFLS
Trigger: AGAGAGAAAGTAAACACAGCAGCGCAGCAGCAGACG...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGCGTCTGCTGCTGCGCTaGTGTGTTTACTTTCTCTCT +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLRLLLR*CVYFLS
Trigger: AGAGAGAAAGTAAACACAGCAGCGCAGCAGCAGACG...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAACGTCTGCTGCTGCGCTaGTGTGTTTACTTTCTCTCT +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKRLLLR*CVYFLS
Trigger: AGAGAGAAAGTAAACACAGCAGCGCAGCAGCAGACG...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR GCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGATGTGCGTCTGCTGCTaGGCTGCTGTGTTTACTTTC +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLMCVCC*AAVFTF
Trigger: GAAAGTAAACACAGCAGCGCAGCAGCAGACGCACAT...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGATGTGCGTCTGCTGCTaGGCTGCTGTGTTTACTTTC +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMMCVCC*AAVFTF
Trigger: GAAAGTAAACACAGCAGCGCAGCAGCAGACGCACAT...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAAATGTGCGTCTGCTGCTaGGCTGCTGTGTTTACTTTC +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKMCVCC*AAVFTF
Trigger: GAAAGTAAACACAGCAGCGCAGCAGCAGACGCACAT...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR GCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCAGCCGTCTGCAGAGTGTaGGCAGTTCTTCAGTATTTA +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLAAVCRV*AVLQYL
Trigger: TAAATACTGAAGAACTGCGCACACTCTGCAGACGGC...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022918.15
ENSMUST00000110297.10
CDS-3UTR CCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCTGGATGGGCTACATCTaGAGTCGTGGTTTTATCAAA +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIWMGYI*SRGFIK
Trigger: TTTGATAAAACCACGACTCCAGATGTAGCCCATCCA...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCAAAGGTCTTCCTCATTaGTTTTCCGACTCTGAGACA +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIKGLPH*FSDSET
Trigger: TGTCTCAGAGTCGGAAAACCAATGAGGAAGACCTTT...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGGCAGTAAGAGTTCACTaGGGTCGCTTAGGTTTGGTC +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMAVRVH*GRLGLV
Trigger: GACCAAACCTAAGCGACCCCAGTGAACTCTTACTGC...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGGCAGTAAGAGTTCACTaGGGTCGCTTAGGTTTGGTC +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLAVRVH*GRLGLV
Trigger: GACCAAACCTAAGCGACCCCAGTGAACTCTTACTGC...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCTCAGTTCACTTTTTCTaGAAGGATGCTTCTGGGTGT +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCISVHFF*KDASGC
Trigger: ACACCCAGAAGCATCCTTCCAGAAAAAGTGAACTGA...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTTTCTTCTTCAGAAGTTaGAGACACAACTCTCGCAGG +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADAFFFRS*RHNSRR
Trigger: CCTGCGAGAGTTGTGTCTTCAACTTCTGAAGAAGAA...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGGGGCCTGAGACTTCTTaGAGGCTTTCTGTAGCTTTA +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMGPETS*RLSVAL
Trigger: TAAAGCTACAGAAAGCCTTCAAGAAGTCTCAGGCCC...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAAGGGCCTGAGACTTCTTaGAGGCTTTCTGTAGCTTTA +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKGPETS*RLSVAL
Trigger: TAAAGCTACAGAAAGCCTTCAAGAAGTCTCAGGCCC...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR TCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGTTGTTCCTTTGGGCCTaGGACTTCTTGAAGGCTTTC +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLLFLWA*DFLKAF
Trigger: GAAAGCCTTCAAGAAGTCTCAGGCCCAAAGGAACAA...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGTTGTTCCTTTGGGCCTaGGACTTCTTGAAGGCTTTC +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMLFLWA*DFLKAF
Trigger: GAAAGCCTTCAAGAAGTCTCAGGCCCAAAGGAACAA...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAATTGTTCCTTTGGGCCTaGGACTTCTTGAAGGCTTTC +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKLFLWA*DFLKAF
Trigger: GAAAGCCTTCAAGAAGTCTCAGGCCCAAAGGAACAA...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR TCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCTTGGTTTTCCGACTCTaGGACATAGGAACTTATGTA +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCILVFRL*DIGTYV
Trigger: TACATAAGTTCCTATGTCTCAGAGTCGGAAAACCAA...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGCTGGACTCCACTGAATaGAGAAGGCATACAAGTGGT +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMLDSTE*RRHTSG
Trigger: ACCACTTGTATGCCTTCTTCATTCAGTGGAGTCCAG...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAACTGGACTCCACTGAATaGAGAAGGCATACAAGTGGT +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKLDSTE*RRHTSG
Trigger: ACCACTTGTATGCCTTCTTCATTCAGTGGAGTCCAG...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR TCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGTGGAGCAACCTGCTTTaGGTTGATGTCTTCCCTTGT +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLWSNLL*VDVFPC
Trigger: ACAAGGGAAGACATCAACTCAAAGCAGGTTGCTCCA...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGTGGAGCAACCTGCTTTaGGTTGATGTCTTCCCTTGT +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMWSNLL*VDVFPC
Trigger: ACAAGGGAAGACATCAACTCAAAGCAGGTTGCTCCA...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCAGCAGTAATATCCACTaGCTGGGACTTTTTCTTCAA +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCISSNIH*LGLFLQ
Trigger: TTGAAGAAAAAGTCCCAGTCAGTGGATATTACTGCT...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCACTTCTGGGTGTTTGCTaGGTTGTTCTGTTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLALLGVC*VVLFFF
Trigger: GAAGAAGAACAGAACAACTCAGCAAACACCCAGAAG...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTGACCTTTTACTTCTGTaGTTTGTTCCTTTGGGCCTG +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADADLLLL*FVPLGL
Trigger: CAGGCCCAAAGGAACAAAGCACAGAAGTAAAAGGTC...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGGAGTTTTCCAGAGTTTaGGCAGCTCCTCTACTTCTG +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMEFSRV*AAPLLL
Trigger: CAGAAGTAGAGGAGCTGCGCAAACTCTGGAAAACTC...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGGAGTTTTCCAGAGTTTaGGCAGCTCCTCTACTTCTG +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLEFSRV*AAPLLL
Trigger: CAGAAGTAGAGGAGCTGCGCAAACTCTGGAAAACTC...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAAGAGTTTTCCAGAGTTTaGGCAGCTCCTCTACTTCTG +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKEFSRV*AAPLLL
Trigger: CAGAAGTAGAGGAGCTGCGCAAACTCTGGAAAACTC...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR GCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCACTTTGTGCATACTGTTaGATCGTAGCACTTGCTTGC +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLALCAYC*IVALAC
Trigger: GCAAGCAAGTGCTACGATGCAACAGTATGCACAAAG...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTCTTTGTGCATACTGTTaGATCGTAGCACTTGCTTGC +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADALCAYC*IVALAC
Trigger: GCAAGCAAGTGCTACGATGCAACAGTATGCACAAAG...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCCCTTTCTTGTGGCACTaGAAACCAATATTCGTGTTT +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIPFLWH*KPIFVF
Trigger: AAACACGAATATTGGTTTGCAGTGCCACAAGAAAGG...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCTTCACCAGAATCTTCTaGATAGATTTCTGGACTCCA +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIFTRIF*IDFWTP
Trigger: TGGAGTCCAGAAATCTATGCAGAAGATTCTGGTGAA...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTCTTTTTCTGGAAGGATaGTTCTGGGTGTTTGCTGAG +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADALFLEG*FWVFAE
Trigger: CTCAGCAAACACCCAGAAGCATCCTTCCAGAAAAAG...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTCTACATCTGGAGTCGTaGTTTTATCAAATTCAGCCT +
Preference number: 4 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRLHLES*FYQIQP
Trigger: AGGCTGAATTTGATAAAACCACGACTCCAGATGTAG...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTTGCAGTGAACTTTCCTaGTGGGAAGAATCCTGGTTA +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADACSELS*WEESWL
Trigger: TAACCAGGATTCTTCCCACCAGGAAAGTTCACTGCA...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCAAAGAAGGCATACAAGTaGTCTGTCCTTTCTTGTGGC +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLAKKAYK*SVLSCG
Trigger: GCCACAAGAAAGGACAGACCACTTGTATGCCTTCTT...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGTTCTTCTTCAGAAGTTaGAGACACAACTCTCGCAGG +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMFFFRS*RHNSRR
Trigger: CCTGCGAGAGTTGTGTCTTCAACTTCTGAAGAAGAA...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGTTCTTCTTCAGAAGTTaGAGACACAACTCTCGCAGG +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLFFFRS*RHNSRR
Trigger: CCTGCGAGAGTTGTGTCTTCAACTTCTGAAGAAGAA...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAATTCTTCTTCAGAAGTTaGAGACACAACTCTCGCAGG +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKFFFRS*RHNSRR
Trigger: CCTGCGAGAGTTGTGTCTTCAACTTCTGAAGAAGAA...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR TCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCAGAATCCTGGTTATCCTaGCCTTTTACTTCTGTGCTT +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLAESWLS*PFTSVL
Trigger: AAGCACAGAAGTAAAAGGTCAGGATAACCAGGATTC...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGCTTCTGGGTGTTTGCTaGGTTGTTCTGTTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLLLGVC*VVLFFF
Trigger: GAAGAAGAACAGAACAACTCAGCAAACACCCAGAAG...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGGTTCCTTTAGGCTTCTaGAAAGACATCCTTCTCCCA +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLVPLGF*KDILLP
Trigger: TGGGAGAAGGATGTCTTTTCAGAAGCCTAAAGGAAC...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGGTTCCTTTAGGCTTCTaGAAAGACATCCTTCTCCCA +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMVPLGF*KDILLP
Trigger: TGGGAGAAGGATGTCTTTTCAGAAGCCTAAAGGAAC...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCCAAATTTCAGGGCTATaGTATTCAAAGAATCCCTTG +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIQISGL*YSKNPL
Trigger: CAAGGGATTCTTTGAATAGCATAGCCCTGAAATTTG...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTCAAATTTCAGGGCTATaGTATTCAAAGAATCCCTTG +
Preference number: 4 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRQISGL*YSKNPL
Trigger: CAAGGGATTCTTTGAATAGCATAGCCCTGAAATTTG...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGGACCTTTTACTTCTGTaGTTTGTTCCTTTGGGCCTG +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMDLLLL*FVPLGL
Trigger: CAGGCCCAAAGGAACAAAGCACAGAAGTAAAAGGTC...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAAGACCTTTTACTTCTGTaGTTTGTTCCTTTGGGCCTG +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKDLLLL*FVPLGL
Trigger: CAGGCCCAAAGGAACAAAGCACAGAAGTAAAAGGTC...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR GCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAACTTTGTGCATACTGTTaGATCGTAGCACTTGCTTGC +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKLCAYC*IVALAC
Trigger: GCAAGCAAGTGCTACGATGCAACAGTATGCACAAAG...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR GCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGCTTTTTCTGGAAGGATaGTTCTGGGTGTTTGCTGAG +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLLFLEG*FWVFAE
Trigger: CTCAGCAAACACCCAGAAGCATCCTTCCAGAAAAAG...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTTGGATGGGCTACATCTaGAGTCGTGGTTTTATCAAA +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADAWMGYI*SRGFIK
Trigger: TTTGATAAAACCACGACTCCAGATGTAGCCCATCCA...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCATGGATGGGCTACATCTaGAGTCGTGGTTTTATCAAA +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLAWMGYI*SRGFIK
Trigger: TTTGATAAAACCACGACTCCAGATGTAGCCCATCCA...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTGGGGTCTGTCTTGTGTaGATCAAACATTATGTTATT +
Preference number: 4 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRGVCLV*IKHYVI
Trigger: AATAACATAATGTTTGATCCACACAAGACAGACCCC...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAATGCAGTGAACTTTCCTaGTGGGAAGAATCCTGGTTA +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKCSELS*WEESWL
Trigger: TAACCAGGATTCTTCCCACCAGGAAAGTTCACTGCA...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR CCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCAAAAGGTCTTCCTCATTaGTTTTCCGACTCTGAGACA +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLAKGLPH*FSDSET
Trigger: TGTCTCAGAGTCGGAAAACCAATGAGGAAGACCTTT...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTAAAGGTCTTCCTCATTaGTTTTCCGACTCTGAGACA +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADAKGLPH*FSDSET
Trigger: TGTCTCAGAGTCGGAAAACCAATGAGGAAGACCTTT...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGAAGAAGGCATACAAGTaGTCTGTCCTTTCTTGTGGC +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLKKAYK*SVLSCG
Trigger: GCCACAAGAAAGGACAGACCACTTGTATGCCTTCTT...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAAAAGAAGGCATACAAGTaGTCTGTCCTTTCTTGTGGC +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKKKAYK*SVLSCG
Trigger: GCCACAAGAAAGGACAGACCACTTGTATGCCTTCTT...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
40% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR CCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCGTAATATCCACTGACTaGGACTTTTTCTTCAACCAT +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIVISTD*DFFFNH
Trigger: ATGGTTGAAGAAAAAGTCCCAGTCAGTGGATATTAC...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGGAATCCTGGTTATCCTaGCCTTTTACTTCTGTGCTT +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMESWLS*PFTSVL
Trigger: AAGCACAGAAGTAAAAGGTCAGGATAACCAGGATTC...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAAGAATCCTGGTTATCCTaGCCTTTTACTTCTGTGCTT +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKESWLS*PFTSVL
Trigger: AAGCACAGAAGTAAAAGGTCAGGATAACCAGGATTC...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR TCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTTTGGTTTTCCGACTCTaGGACATAGGAACTTATGTA +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADALVFRL*DIGTYV
Trigger: TACATAAGTTCCTATGTCTCAGAGTCGGAAAACCAA...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGATTTCTGGACTCCACTaGATGAAGAAGGCATACAAG +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMISGLH*MKKAYK
Trigger: CTTGTATGCCTTCTTCATTCAGTGGAGTCCAGAAAT...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGATTTCTGGACTCCACTaGATGAAGAAGGCATACAAG +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLISGLH*MKKAYK
Trigger: CTTGTATGCCTTCTTCATTCAGTGGAGTCCAGAAAT...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAAATTTCTGGACTCCACTaGATGAAGAAGGCATACAAG +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKISGLH*MKKAYK
Trigger: CTTGTATGCCTTCTTCATTCAGTGGAGTCCAGAAAT...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR TCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTGTAAGCTTTTCAATCTaGTCAGGCAGTAAGAGTTCA +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADAVSFSI*SGSKSS
Trigger: TGAACTCTTACTGCCTGATCAGATTGAAAAGCTTAC...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCAGTAAGCTTTTCAATCTaGTCAGGCAGTAAGAGTTCA +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLAVSFSI*SGSKSS
Trigger: TGAACTCTTACTGCCTGATCAGATTGAAAAGCTTAC...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTAACTTATGTAATCGATaGCTTCGCTTTTCCTTTAAC +
Preference number: 4 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRNLCNR*LRFSFN
Trigger: GTTAAAGGAAAAGCGAAGGCATCGATTACATAAGTT...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTCCTTTCTTGTGGCACTaGAAACCAATATTCGTGTTT +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADAPFLWH*KPIFVF
Trigger: AAACACGAATATTGGTTTGCAGTGCCACAAGAAAGG...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTACTGAACAAGTTCATTaGGTGTGGTATCAAATTTCA +
Preference number: 4 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRTEQVH*VWYQIS
Trigger: TGAAATTTGATACCACACCCAATGAACTTGTTCAGT...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTCTACATCTGGAGTCGTaGTTTTATCAAATTCAGCCT +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADALHLES*FYQIQP
Trigger: AGGCTGAATTTGATAAAACCACGACTCCAGATGTAG...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCACTACATCTGGAGTCGTaGTTTTATCAAATTCAGCCT +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLALHLES*FYQIQP
Trigger: AGGCTGAATTTGATAAAACCACGACTCCAGATGTAG...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGTGGATGGGCTACATCTaGAGTCGTGGTTTTATCAAA +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLWMGYI*SRGFIK
Trigger: TTTGATAAAACCACGACTCCAGATGTAGCCCATCCA...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAATGGATGGGCTACATCTaGAGTCGTGGTTTTATCAAA +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKWMGYI*SRGFIK
Trigger: TTTGATAAAACCACGACTCCAGATGTAGCCCATCCA...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR CCA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTACTGATCTAGTTCTATaGGCAGTGATTCCTTTATTT +
Preference number: 4 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRTDLVL*AVIPLF
Trigger: AAATAAAGGAATCACTGCCCATAGAACTAGATCAGT...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCACTGATCTAGTTCTATaGGCAGTGATTCCTTTATTT +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCITDLVL*AVIPLF
Trigger: AAATAAAGGAATCACTGCCCATAGAACTAGATCAGT...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGAAAGGTCTTCCTCATTaGTTTTCCGACTCTGAGACA +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMKGLPH*FSDSET
Trigger: TGTCTCAGAGTCGGAAAACCAATGAGGAAGACCTTT...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAAAAAGGTCTTCCTCATTaGTTTTCCGACTCTGAGACA +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKKGLPH*FSDSET
Trigger: TGTCTCAGAGTCGGAAAACCAATGAGGAAGACCTTT...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
39% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR CCA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCAAAGACCTCAAATTCTaGGCAGAATGTGAAAACAAA +
Preference number: 4 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIKDLKF*AECENK
Trigger: TTTGTTTTCACATTCTGCCCAGAATTTGAGGTCTTT...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGTTGGTTTTCCGACTCTaGGACATAGGAACTTATGTA +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMLVFRL*DIGTYV
Trigger: TACATAAGTTCCTATGTCTCAGAGTCGGAAAACCAA...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGTTGGTTTTCCGACTCTaGGACATAGGAACTTATGTA +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLLVFRL*DIGTYV
Trigger: TACATAAGTTCCTATGTCTCAGAGTCGGAAAACCAA...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAATTGGTTTTCCGACTCTaGGACATAGGAACTTATGTA +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKLVFRL*DIGTYV
Trigger: TACATAAGTTCCTATGTCTCAGAGTCGGAAAACCAA...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR TCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGGTAAGCTTTTCAATCTaGTCAGGCAGTAAGAGTTCA +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMVSFSI*SGSKSS
Trigger: TGAACTCTTACTGCCTGATCAGATTGAAAAGCTTAC...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGGTAAGCTTTTCAATCTaGTCAGGCAGTAAGAGTTCA +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLVSFSI*SGSKSS
Trigger: TGAACTCTTACTGCCTGATCAGATTGAAAAGCTTAC...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR TCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGAGCAGTAATATCCACTaGCTGGGACTTTTTCTTCAA +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLSSNIH*LGLFLQ
Trigger: TTGAAGAAAAAGTCCCAGTCAGTGGATATTACTGCT...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCACAAATTTCAGGGCTATaGTATTCAAAGAATCCCTTG +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLAQISGL*YSKNPL
Trigger: CAAGGGATTCTTTGAATAGCATAGCCCTGAAATTTG...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGCCTTTCTTGTGGCACTaGAAACCAATATTCGTGTTT +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLPFLWH*KPIFVF
Trigger: AAACACGAATATTGGTTTGCAGTGCCACAAGAAAGG...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAACCTTTCTTGTGGCACTaGAAACCAATATTCGTGTTT +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKPFLWH*KPIFVF
Trigger: AAACACGAATATTGGTTTGCAGTGCCACAAGAAAGG...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR GCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGTTCACCAGAATCTTCTaGATAGATTTCTGGACTCCA +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLFTRIF*IDFWTP
Trigger: TGGAGTCCAGAAATCTATGCAGAAGATTCTGGTGAA...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGTTCACCAGAATCTTCTaGATAGATTTCTGGACTCCA +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMFTRIF*IDFWTP
Trigger: TGGAGTCCAGAAATCTATGCAGAAGATTCTGGTGAA...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAATTCACCAGAATCTTCTaGATAGATTTCTGGACTCCA +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKFTRIF*IDFWTP
Trigger: TGGAGTCCAGAAATCTATGCAGAAGATTCTGGTGAA...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR CCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGCTACATCTGGAGTCGTaGTTTTATCAAATTCAGCCT +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMLHLES*FYQIQP
Trigger: AGGCTGAATTTGATAAAACCACGACTCCAGATGTAG...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAACTACATCTGGAGTCGTaGTTTTATCAAATTCAGCCT +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKLHLES*FYQIQP
Trigger: AGGCTGAATTTGATAAAACCACGACTCCAGATGTAG...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR CCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCAGGGGTCTGTCTTGTGTaGATCAAACATTATGTTATT +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLAGVCLV*IKHYVI
Trigger: AATAACATAATGTTTGATCCACACAAGACAGACCCC...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCATTCTGCATAGATTTCTaGACTCCACTGAATGAAGAA +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLAFCIDF*TPLNEE
Trigger: TTCTTCATTCAGTGGAGTCCAGAAATCTATGCAGAA...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGTTTGGCCAGTGTCAATaGTATAGAACCTCTTCAGTT +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLFGQCQ*YRTSSV
Trigger: AACTGAAGAGGTTCTATACCATTGACACTGGCCAAA...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGCAAATTTCAGGGCTATaGTATTCAAAGAATCCCTTG +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLQISGL*YSKNPL
Trigger: CAAGGGATTCTTTGAATAGCATAGCCCTGAAATTTG...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTAACTTATGTAATCGATaGCTTCGCTTTTCCTTTAAC +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADANLCNR*LRFSFN
Trigger: GTTAAAGGAAAAGCGAAGGCATCGATTACATAAGTT...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCAACTGAACAAGTTCATTaGGTGTGGTATCAAATTTCA +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLATEQVH*VWYQIS
Trigger: TGAAATTTGATACCACACCCAATGAACTTGTTCAGT...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGGGGGTCTGTCTTGTGTaGATCAAACATTATGTTATT +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLGVCLV*IKHYVI
Trigger: AATAACATAATGTTTGATCCACACAAGACAGACCCC...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGGGGGTCTGTCTTGTGTaGATCAAACATTATGTTATT +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMGVCLV*IKHYVI
Trigger: AATAACATAATGTTTGATCCACACAAGACAGACCCC...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAAGGGGTCTGTCTTGTGTaGATCAAACATTATGTTATT +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKGVCLV*IKHYVI
Trigger: AATAACATAATGTTTGATCCACACAAGACAGACCCC...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR CCA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTACTGATCTAGTTCTATaGGCAGTGATTCCTTTATTT +
Preference number: 4 (lower is better)
Translates to: LNYSIVYYSHCPFIRADATDLVL*AVIPLF
Trigger: AAATAAAGGAATCACTGCCCATAGAACTAGATCAGT...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGTTCTGCATAGATTTCTaGACTCCACTGAATGAAGAA +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMFCIDF*TPLNEE
Trigger: TTCTTCATTCAGTGGAGTCCAGAAATCTATGCAGAA...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAATTCTGCATAGATTTCTaGACTCCACTGAATGAAGAA +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKFCIDF*TPLNEE
Trigger: TTCTTCATTCAGTGGAGTCCAGAAATCTATGCAGAA...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR CCA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCAAAAGACCTCAAATTCTaGGCAGAATGTGAAAACAAA +
Preference number: 4 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLAKDLKF*AECENK
Trigger: TTTGTTTTCACATTCTGCCCAGAATTTGAGGTCTTT...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGGTAATATCCACTGACTaGGACTTTTTCTTCAACCAT +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMVISTD*DFFFNH
Trigger: ATGGTTGAAGAAAAAGTCCCAGTCAGTGGATATTAC...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGAACTTATGTAATCGATaGCTTCGCTTTTCCTTTAAC +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMNLCNR*LRFSFN
Trigger: GTTAAAGGAAAAGCGAAGGCATCGATTACATAAGTT...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGAACTTATGTAATCGATaGCTTCGCTTTTCCTTTAAC +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLNLCNR*LRFSFN
Trigger: GTTAAAGGAAAAGCGAAGGCATCGATTACATAAGTT...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR GCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAAAACTTATGTAATCGATaGCTTCGCTTTTCCTTTAAC +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKNLCNR*LRFSFN
Trigger: GTTAAAGGAAAAGCGAAGGCATCGATTACATAAGTT...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
36% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR CCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGACTGAACAAGTTCATTaGGTGTGGTATCAAATTTCA +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMTEQVH*VWYQIS
Trigger: TGAAATTTGATACCACACCCAATGAACTTGTTCAGT...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGACTGAACAAGTTCATTaGGTGTGGTATCAAATTTCA +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLTEQVH*VWYQIS
Trigger: TGAAATTTGATACCACACCCAATGAACTTGTTCAGT...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGACTGATCTAGTTCTATaGGCAGTGATTCCTTTATTT +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLTDLVL*AVIPLF
Trigger: AAATAAAGGAATCACTGCCCATAGAACTAGATCAGT...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGACTGATCTAGTTCTATaGGCAGTGATTCCTTTATTT +
Preference number: 4 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMTDLVL*AVIPLF
Trigger: AAATAAAGGAATCACTGCCCATAGAACTAGATCAGT...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CCA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAAACTGATCTAGTTCTATaGGCAGTGATTCCTTTATTT +
Preference number: 4 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKTDLVL*AVIPLF
Trigger: AAATAAAGGAATCACTGCCCATAGAACTAGATCAGT...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR CCA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGAAAGACCTCAAATTCTaGGCAGAATGTGAAAACAAA +
Preference number: 4 (lower is better)
Translates to: RIVATWLIVGFLQERIQLKDLKF*AECENK
Trigger: TTTGTTTTCACATTCTGCCCAGAATTTGAGGTCTTT...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS CCA 90 bp TCTTGTCTAAGGTCTTCTTTTGGCCAGTGTCCGGTCCCTCGGGACTaGCCGGCGAGGGCGGTCGGAGCTCCTCCGGCCCGCAGCCCGGGT +
Preference number: 5 (lower is better)
Translates to: SCLRSSFGQCPVPRD*PARAVGAPPARSPG
Trigger: ACCCGGGCTGCGGGCCGGAGGAGCTCCGACCGCCCTCGCCGGCCAGTCCCGAGGGACCGGACACTGGCCAAAAGAAGACCTTAGACAAGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170127.9
CDS CCA 90 bp GACTCCTCGGTGCTCCTGGGAGCAGTGCTGGCACTGTCGTTACCCTaGTCACGCGCTCTCGGGTCTGCGTCCTCAGCAGAGACTCCTGTC +
Preference number: 5 (lower is better)
Translates to: DSSVLLGAVLALSLP*SRALGSASSAETPV
Trigger: GACAGGAGTCTCTGCTGAGGACGCAGACCCGAGAGCGCGTGACCAGGGTAACGACAGTGCCAGCACTGCTCCCAGGAGCACCGAGGAGTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000229769.2
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS CCA 90 bp AAGCGTCTTCCGAGAGAGACTCCTCGGTGCTCCTGGGAGCAGTGCTaGCACTGTCGTTACCCTGGTCACGCGCTCTCGGGTCTGCGTCCT +
Preference number: 5 (lower is better)
Translates to: KRLPRETPRCSWEQC*HCRYPGHALSGLRP
Trigger: AGGACGCAGACCCGAGAGCGCGTGACCAGGGTAACGACAGTGCCAGCACTGCTCCCAGGAGCACCGAGGAGTCTCTCTCGGAAGACGCTT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000229769.2
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS TCA 90 bp CAGAGTGTGCGCAGTTCTTCAGTATTTAGAGCATCGATCCTGCGGTaGTACTCAGCCACCGACACTACCTCCCACTCCCTGGCTGCTGCT +
Preference number: 5 (lower is better)
Translates to: QSVRSSSVFRASILR*YSATDTTSHSLAAA
Trigger: AGCAGCAGCCAGGGAGTGGGAGGTAGTGTCGGTGGCTGAGTATCACCGCAGGATCGATGCTCTAAATACTGAAGAACTGCGCACACTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022918.15
ENSMUST00000110297.10
CDS GCA 90 bp GTCTGCAGAGTGTGCGCAGTTCTTCAGTATTTAGAGCATCGATCCTaGGGTGATACTCAGCCACCGACACTACCTCCCACTCCCTGGCTG +
Preference number: 5 (lower is better)
Translates to: VCRVCAVLQYLEHRS*GDTQPPTLPPTPWL
Trigger: CAGCCAGGGAGTGGGAGGTAGTGTCGGTGGCTGAGTATCACCGCAGGATCGATGCTCTAAATACTGAAGAACTGCGCACACTCTGCAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022918.15
ENSMUST00000110297.10
CDS-3UTR CAA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACCTCCTGTCGCTTTCTTaGAATGGCAGGACCCCCTTC +
Preference number: 5 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNLLSLS*NGRTPF
Trigger: GAAGGGGGTCCTGCCATTCAAAGAAAGCGACAGGAG...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACGCTCCAGGTCTGCTTTaGCTGGAGCAACCTGCTTTG +
Preference number: 5 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNAPGLL*LEQPAL
Trigger: CAAAGCAGGTTGCTCCAGCAAAAGCAGACCTGGAGC...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS TCA 90 bp ATGGGCTACATCTGGAGTCGTGGTTTTATCAAATTCAGCCTCGGATaGCGTTGGCGACAGAGGGCTTACAGGGCTGAGGGATGGGGAACT +
Preference number: 5 (lower is better)
Translates to: MGYIWSRGFIKFSLG*RWRQRAYRAEGWGT
Trigger: AGTTCCCCATCCCTCAGCCCTGTAAGCCCTCTGTCGCCAACGTCATCCGAGGCTGAATTTGATAAAACCACGACTCCAGATGTAGCCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000229769.2
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS TCA 90 bp TCCATGTGCGTCTGCTGCTGCGCTGCTGTGTTTACTTTCTCTCTGTaGCACCTGCTGAATCGTGTCCCTTTGCTGCTTGGCTTGCTGCAT +
Preference number: 5 (lower is better)
Translates to: SMCVCCCAAVFTFSL*HLLNRVPLLLGLLH
Trigger: ATGCAGCAAGCCAAGCAGCAAAGGGACACGATTCAGCAGGTGTCACAGAGAGAAAGTAAACACAGCAGCGCAGCAGCAGACGCACATGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS-3UTR CAA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACCTGAATCGTGTCCCTTaGCTGCTTGGCTTGCTGCAT +
Preference number: 5 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNLNRVP*LLGLLH
Trigger: ATGCAGCAAGCCAAGCAGCAAAGGGACACGATTCAG...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS TCA 90 bp ACGTTAGCAGCCTCTGACGTGGCTGTCAAGGACTGGACTTCCATCTaGCTGACAGTCTGCACAGATTCTGACGAGGCATCAGATGACTTC +
Preference number: 5 (lower is better)
Translates to: TLAASDVAVKDWTSI*LTVCTDSDEASDDF
Trigger: GAAGTCATCTGATGCCTCGTCAGAATCTGTGCAGACTGTCAGTCAGATGGAAGTCCAGTCCTTGACAGCCACGTCAGAGGCTGCTAACGT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000229769.2
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS-3UTR CAA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCTTGGGTGCCGGGGGCTaGCTGGCTTGTGGTGCTTGC +
Preference number: 5 (lower is better)
Translates to: WGSWYATRLNKRTVKQCILGAGG*LACGAC
Trigger: GCAAGCACCACAAGCCAGCAAGCCCCCGGCACCCAA...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS GCA 90 bp GGTCGGAAAGATTCAGGCTCCAGGTCTGCTTTTGCTGGAGCAACCTaGTTTGAGTTGATGTCTTCCCTTGTAGTAATCTGGAGCCGTCTG +
Preference number: 5 (lower is better)
Translates to: GRKDSGSRSAFAGAT*FELMSSLVVIWSRL
Trigger: CAGACGGCTCCAGATTACTACAAGGGAAGACATCAACTCAAAGCAGGTTGCTCCAGCAAAAGCAGACCTGGAGCCTGAATCTTTCCGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022918.15
ENSMUST00000110297.10
ENSMUST00000230131.2
CDS GCA 90 bp GGTCGGAAAGATTCAGGCTCCAGGTCTGCTTTTGCTGGAGCAACCTaGTTTGAGTTGATGTCTTCCCTTGTAGTAATCTCCCACTCCCTG +
Preference number: 5 (lower is better)
Translates to: GRKDSGSRSAFAGAT*FELMSSLVVISHSL
Trigger: CAGGGAGTGGGAGATTACTACAAGGGAAGACATCAACTCAAAGCAGGTTGCTCCAGCAAAAGCAGACCTGGAGCCTGAATCTTTCCGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACCCTTTGCTGCTTGGCTaGCTGCATAGAGTGAGTTTT +
Preference number: 5 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNPLLLG*LHRVSF
Trigger: AAAACTCACTCTATGCAGCAAGCCAAGCAGCAAAGG...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACCATCGTAGCACTTGCTaGCGATACAAAGGTCTTCCT +
Preference number: 5 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNHRSTC*RYKGLP
Trigger: AGGAAGACCTTTGTATCGCAAGCAAGTGCTACGATG...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACGTGGTCTGTCCTTTCTaGTGGCACTGCAAACCAATA +
Preference number: 5 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNVVCPF*WHCKPI
Trigger: TATTGGTTTGCAGTGCCACAAGAAAGGACAGACCAC...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp TTTCAATCTGATCAGGCAGTAAGAGTTCACTGGGGTCGCTTAGGTTTGGTCGGAGCTCCAGGTCTGCTTTaGCTGGAGCAACCTGCTTTG +
Preference number: 5 (lower is better)
Translates to: FQSDQAVRVHWGRLGLVGAPGLL*LEQPAL
Trigger: CAAAGCAGGTTGCTCCAGCAAAAGCAGACCTGGAGC...TCCGACCAAACCTAAGCGACCCCAGTGAACTCTTACTGCCTGATCAGATTGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231215.2
CDS TCA 90 bp TCTCTTTGTACATGGCAGCTGACATCACCTCTTCCATCGGACACATaGTGCCGTATTCCTCACAACCGTTCTCTTGAACCAAGGGGTCTG +
Preference number: 5 (lower is better)
Translates to: SLCTWQLTSPLPSDT*CRIPHNRSLEPRGL
Trigger: CAGACCCCTTGGTTCAAGAGAACGGTTGTGAGGAATACGGCATCATGTGTCCGATGGAAGAGGTGATGTCAGCTGCCATGTACAAAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000229769.2
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS TCA 90 bp AACATGCACATTTCAATACTGCTTCTTGGAAGTCCCAGTGTGAGCTaGCGCTTGGACATGTCAGGAAGGCACCAGCAGCTTTCCCTATGG +
Preference number: 5 (lower is better)
Translates to: NMHISILLLGSPSVS*RLDMSGRHQQLSLW
Trigger: CCATAGGGAAAGCTGCTGGTGCCTTCCTGACATGTCCAAGCGTCAGCTCACACTGGGACTTCCAAGAAGCAGTATTGAAATGTGCATGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231215.2
CDS-3UTR CAA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACCTTCTTCTTCAGAAGTaGAAGACACAACTCTCGCAG +
Preference number: 5 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNLLLQK*KTQLSQ
Trigger: CTGCGAGAGTTGTGTCTTCAACTTCTGAAGAAGAAG...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACACCAAGGGGTCTGTCTaGTGTGGATCAAACATTATG +
Preference number: 5 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNTKGSV*CGSNIM
Trigger: CATAATGTTTGATCCACACAAGACAGACCCCTTGGT...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS TCA 90 bp TGCAGCCCTTATCTCTGTCACTCTTCCAGCCACCTCAGACTGCAATaGCCAACATGCACATTTCAATACTGCTTCTTGGAAGTCCCAGTG +
Preference number: 5 (lower is better)
Translates to: CSPYLCHSSSHLRLQ*PTCTFQYCFLEVPV
Trigger: CACTGGGACTTCCAAGAAGCAGTATTGAAATGTGCATGTTGGTCATTGCAGTCTGAGGTGGCTGGAAGAGTGACAGAGATAAGGGCTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231215.2
CDS GCA 90 bp GTCTGCAGAGTGTGCGCAGTTCTTCAGTATTTAGAGCATCGATCCTaGGGTGATACTCAGCCACCGACACTACCAGAGTGTATTTATGGT +
Preference number: 5 (lower is better)
Translates to: VCRVCAVLQYLEHRS*GDTQPPTLPECIYG
Trigger: ACCATAAATACACTCTGGTAGTGTCGGTGGCTGAGTATCACCGCAGGATCGATGCTCTAAATACTGAAGAACTGCGCACACTCTGCAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230131.2
CDS GCA 90 bp AGTCCTGCAGCCCTTATCTCTGTCACTCTTCCAGCCACCTCAGACTaGAATGACCAACATGCACATTTCAATACTGCTTCTTGGAAGTCC +
Preference number: 5 (lower is better)
Translates to: SPAALISVTLPATSD*NDQHAHFNTASWKS
Trigger: GGACTTCCAAGAAGCAGTATTGAAATGTGCATGTTGGTCATTGCAGTCTGAGGTGGCTGGAAGAGTGACAGAGATAAGGGCTGCAGGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231215.2
CDS GCA 90 bp GCAACCTGCTTTGAGTTGATGTCTTCCCTTGTAGTAATAGAGTCCTaGAGCCCTTATCTCTGTCACTCTTCCAGCCACCTCAGACTGCAA +
Preference number: 5 (lower is better)
Translates to: ATCFELMSSLVVIES*SPYLCHSSSHLRLQ
Trigger: TTGCAGTCTGAGGTGGCTGGAAGAGTGACAGAGATAAGGGCTGCAGGACTCTATTACTACAAGGGAAGACATCAACTCAAAGCAGGTTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231215.2
CDS CCA 90 bp ACCTCAGACTGCAATGACCAACATGCACATTTCAATACTGCTTCTTaGAAGTCCCAGTGTGAGCTGACGCTTGGACATGTCAGGAAGGCA +
Preference number: 5 (lower is better)
Translates to: TSDCNDQHAHFNTAS*KSQCELTLGHVRKA
Trigger: TGCCTTCCTGACATGTCCAAGCGTCAGCTCACACTGGGACTTCCAAGAAGCAGTATTGAAATGTGCATGTTGGTCATTGCAGTCTGAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231215.2
CDS-3UTR CAA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTCCGGGGGTGCTTCTTTaGGATGGGCTACATCTGGAG +
Preference number: 5 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRPGVLL*DGLHLE
Trigger: CTCCAGATGTAGCCCATCCAAAAGAAGCACCCCCGG...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACCTATCCAAAATCTCTTaGTACATGGCAGCTGACATC +
Preference number: 5 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNLSKIS*YMAADI
Trigger: GATGTCAGCTGCCATGTACAAAGAGATTTTGGATAG...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp ACCCGCTGTTACACTACTGGATCCCACTACTGGATCCCAGGCCATGGTGTAAACCTTCTCCCATCTTTCTaGTCTAAGGTCTTCTTTTGG +
Preference number: 5 (lower is better)
Translates to: TRCYTTGSHYWIPGHGVNLLPSF*SKVFFW
Trigger: CCAAAAGAAGACCTTAGACAAGAAAGATGGGAGAAG...GTTTACACCATGGCCTGGGATCCAGTAGTGGGATCCAGTAGTGTAACAGCGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000230203.2
CDS GCA 90 bp CTCATTGGTTTTCCGACTCTGAGACATAGGAACTTATGTAATCGATaGCTTCGCTTTTCCTTTAACAGCGAGGAGCCCTCTCCATGTGCG +
Preference number: 5 (lower is better)
Translates to: LIGFPTLRHRNLCNR*LRFSFNSEEPSPCA
Trigger: CGCACATGGAGAGGGCTCCTCGCTGTTAAAGGAAAAGCGAAGGCATCGATTACATAAGTTCCTATGTCTCAGAGTCGGAAAACCAATGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS-3UTR CAA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTCTCCTGTCGCTTTCTTaGAATGGCAGGACCCCCTTC +
Preference number: 5 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRLLSLS*NGRTPF
Trigger: GAAGGGGGTCCTGCCATTCAAAGAAAGCGACAGGAG...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCGCTCCAGGTCTGCTTTaGCTGGAGCAACCTGCTTTG +
Preference number: 5 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIAPGLL*LEQPAL
Trigger: CAAAGCAGGTTGCTCCAGCAAAAGCAGACCTGGAGC...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS TCA 90 bp TGTTTCTCCAGAAGATACACTGTCTTCACCTGCCTCTTGCTGCAGTaGACTTTCCTGGTGGGAAGAATCCTGGTTATCCTGACCTTTTAC +
Preference number: 5 (lower is better)
Translates to: CFSRRYTVFTCLLLQ*TFLVGRILVILTFY
Trigger: GTAAAAGGTCAGGATAACCAGGATTCTTCCCACCAGGAAAGTTCACTGCAGCAAGAGGCAGGTGAAGACAGTGTATCTTCTGGAGAAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000229769.2
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS TCA 90 bp CAGAGTGTGCGCAGTTCTTCAGTATTTAGAGCATCGATCCTGCGGTaGTACTCAGCCACCGACACTACCAGAGTGTATTTATGGTTAACT +
Preference number: 5 (lower is better)
Translates to: QSVRSSSVFRASILR*YSATDTTRVYLWLT
Trigger: AGTTAACCATAAATACACTCTGGTAGTGTCGGTGGCTGAGTATCACCGCAGGATCGATGCTCTAAATACTGAAGAACTGCGCACACTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230131.2
CDS-3UTR CAA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCACCGGGGGTGCTTCTTTaGGATGGGCTACATCTGGAG +
Preference number: 5 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLAPGVLL*DGLHLE
Trigger: CTCCAGATGTAGCCCATCCAAAAGAAGCACCCCCGG...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTCCGGGGGTGCTTCTTTaGGATGGGCTACATCTGGAG +
Preference number: 5 (lower is better)
Translates to: LNYSIVYYSHCPFIRADAPGVLL*DGLHLE
Trigger: CTCCAGATGTAGCCCATCCAAAAGAAGCACCCCCGG...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTCTGAATCGTGTCCCTTaGCTGCTTGGCTTGCTGCAT +
Preference number: 5 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRLNRVP*LLGLLH
Trigger: ATGCAGCAAGCCAAGCAGCAAAGGGACACGATTCAG...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS GCA 90 bp GGTCGGAAAGATTCAGGCTCCAGGTCTGCTTTTGCTGGAGCAACCTaGTTTGAGTTGATGTCTTCCCTTGTAGTAATCAGAGTGTATTTA +
Preference number: 5 (lower is better)
Translates to: GRKDSGSRSAFAGAT*FELMSSLVVIRVYL
Trigger: TAAATACACTCTGATTACTACAAGGGAAGACATCAACTCAAAGCAGGTTGCTCCAGCAAAAGCAGACCTGGAGCCTGAATCTTTCCGACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166917.3
CDS GCA 90 bp GGTCGGAAAGATTCAGGCTCCAGGTCTGCTTTTGCTGGAGCAACCTaGTTTGAGTTGATGTCTTCCCTTGTAGTAATTAACTCATTCTGT +
Preference number: 5 (lower is better)
Translates to: GRKDSGSRSAFAGAT*FELMSSLVVINSFC
Trigger: ACAGAATGAGTTAATTACTACAAGGGAAGACATCAACTCAAAGCAGGTTGCTCCAGCAAAAGCAGACCTGGAGCCTGAATCTTTCCGACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230127.2
CDS-3UTR CAA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGCCGGGGGTGCTTCTTTaGGATGGGCTACATCTGGAG +
Preference number: 5 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMPGVLL*DGLHLE
Trigger: CTCCAGATGTAGCCCATCCAAAAGAAGCACCCCCGG...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGCCGGGGGTGCTTCTTTaGGATGGGCTACATCTGGAG +
Preference number: 5 (lower is better)
Translates to: RIVATWLIVGFLQERIQLPGVLL*DGLHLE
Trigger: CTCCAGATGTAGCCCATCCAAAAGAAGCACCCCCGG...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTCTCACAACCGTTCTCTaGAACCAAGGGGTCTGTCTT +
Preference number: 5 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRLTTVL*NQGVCL
Trigger: AAGACAGACCCCTTGGTTCAAGAGAACGGTTGTGAG...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCACTCCTGTCGCTTTCTTaGAATGGCAGGACCCCCTTC +
Preference number: 5 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLALLSLS*NGRTPF
Trigger: GAAGGGGGTCCTGCCATTCAAAGAAAGCGACAGGAG...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTGCTCCAGGTCTGCTTTaGCTGGAGCAACCTGCTTTG +
Preference number: 5 (lower is better)
Translates to: LNYSIVYYSHCPFIRADAAPGLL*LEQPAL
Trigger: CAAAGCAGGTTGCTCCAGCAAAAGCAGACCTGGAGC...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCGCACCACCTAAAGGGTaGAACCCTGGAGCAGTAATA +
Preference number: 5 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIAPPKG*NPGAVI
Trigger: TATTACTGCTCCAGGGTTCAACCCTTTAGGTGGTGC...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGCTCCTGTCGCTTTCTTaGAATGGCAGGACCCCCTTC +
Preference number: 5 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMLLSLS*NGRTPF
Trigger: GAAGGGGGTCCTGCCATTCAAAGAAAGCGACAGGAG...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAACTCCTGTCGCTTTCTTaGAATGGCAGGACCCCCTTC +
Preference number: 5 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKLLSLS*NGRTPF
Trigger: GAAGGGGGTCCTGCCATTCAAAGAAAGCGACAGGAG...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR CAA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTCTGTGCTTTGTTCCTTaGGGCCTGAGACTTCTTGAA +
Preference number: 5 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRLCFVP*GLRLLE
Trigger: TTCAAGAAGTCTCAGGCCCAAAGGAACAAAGCACAG...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCCCTTTGCTGCTTGGCTaGCTGCATAGAGTGAGTTTT +
Preference number: 5 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIPLLLG*LHRVSF
Trigger: AAAACTCACTCTATGCAGCAAGCCAAGCAGCAAAGG...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTCCTTTGCTGCTTGGCTaGCTGCATAGAGTGAGTTTT +
Preference number: 5 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRPLLLG*LHRVSF
Trigger: AAAACTCACTCTATGCAGCAAGCCAAGCAGCAAAGG...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTCTGAATCGTGTCCCTTaGCTGCTTGGCTTGCTGCAT +
Preference number: 5 (lower is better)
Translates to: LNYSIVYYSHCPFIRADALNRVP*LLGLLH
Trigger: ATGCAGCAAGCCAAGCAGCAAAGGGACACGATTCAG...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCACTGAATCGTGTCCCTTaGCTGCTTGGCTTGCTGCAT +
Preference number: 5 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLALNRVP*LLGLLH
Trigger: ATGCAGCAAGCCAAGCAGCAAAGGGACACGATTCAG...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCCATCGTAGCACTTGCTaGCGATACAAAGGTCTTCCT +
Preference number: 5 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIHRSTC*RYKGLP
Trigger: AGGAAGACCTTTGTATCGCAAGCAAGTGCTACGATG...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTCATCGTAGCACTTGCTaGCGATACAAAGGTCTTCCT +
Preference number: 5 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRHRSTC*RYKGLP
Trigger: AGGAAGACCTTTGTATCGCAAGCAAGTGCTACGATG...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCGTGGTCTGTCCTTTCTaGTGGCACTGCAAACCAATA +
Preference number: 5 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIVVCPF*WHCKPI
Trigger: TATTGGTTTGCAGTGCCACAAGAAAGGACAGACCAC...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGGCTCCAGGTCTGCTTTaGCTGGAGCAACCTGCTTTG +
Preference number: 5 (lower is better)
Translates to: RIVATWLIVGFLQERIQLAPGLL*LEQPAL
Trigger: CAAAGCAGGTTGCTCCAGCAAAAGCAGACCTGGAGC...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGGCTCCAGGTCTGCTTTaGCTGGAGCAACCTGCTTTG +
Preference number: 5 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMAPGLL*LEQPAL
Trigger: CAAAGCAGGTTGCTCCAGCAAAAGCAGACCTGGAGC...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAAGAGCTGATGGAAGTCTaGCCCTCCTTACCTCCCACT +
Preference number: 5 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKELMEV*PSLPPT
Trigger: AGTGGGAGGTAAGGAGGGCAAGACTTCCATCAGCTC...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS TCA 90 bp TCTTCCATCGGACACATGATGCCGTATTCCTCACAACCGTTCTCTTaGACCAAGGGGTCTGTCTTGTGTGGATCAAACATTATGTTATTT +
Preference number: 5 (lower is better)
Translates to: SSIGHMMPYSSQPFS*TKGSVLCGSNIMLF
Trigger: AAATAACATAATGTTTGATCCACACAAGACAGACCCCTTGGTTCAAGAGAACGGTTGTGAGGAATACGGCATCATGTGTCCGATGGAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000229769.2
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS TCA 90 bp TCCTCTACTTCTGTCTCTGAGTCCCGTTTTAGCTCCTGCCCTTGTTaGTCCTTAAGAACAGCTGGTTTTTCTTTCAGTTCTACTGTTTCT +
Preference number: 5 (lower is better)
Translates to: SSTSVSESRFSSCPC*SLRTAGFSFSSTVS
Trigger: AGAAACAGTAGAACTGAAAGAAAAACCAGCTGTTCTTAAGGATCAACAAGGGCAGGAGCTAAAACGGGACTCAGAGACAGAAGTAGAGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS GCA 90 bp GACTACTATGAATCCAGGCTCTCTGGTGTATTCACCAGAATCTTCTaGATAGATTTCTGGACTCCACTGAATGAAGAAGGCATACAAGTG +
Preference number: 5 (lower is better)
Translates to: DYYESRLSGVFTRIF*IDFWTPLNEEGIQV
Trigger: CACTTGTATGCCTTCTTCATTCAGTGGAGTCCAGAAATCTATGCAGAAGATTCTGGTGAATACACCAGAGAGCCTGGATTCATAGTAGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS-3UTR CAA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCCTTCTTCTTCAGAAGTaGAAGACACAACTCTCGCAG +
Preference number: 5 (lower is better)
Translates to: WGSWYATRLNKRTVKQCILLLQK*KTQLSQ
Trigger: CTGCGAGAGTTGTGTCTTCAACTTCTGAAGAAGAAG...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTCTTCTTCTTCAGAAGTaGAAGACACAACTCTCGCAG +
Preference number: 5 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRLLLQK*KTQLSQ
Trigger: CTGCGAGAGTTGTGTCTTCAACTTCTGAAGAAGAAG...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTACCAAGGGGTCTGTCTaGTGTGGATCAAACATTATG +
Preference number: 5 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRTKGSV*CGSNIM
Trigger: CATAATGTTTGATCCACACAAGACAGACCCCTTGGT...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTCTCACAACCGTTCTCTaGAACCAAGGGGTCTGTCTT +
Preference number: 5 (lower is better)
Translates to: LNYSIVYYSHCPFIRADALTTVL*NQGVCL
Trigger: AAGACAGACCCCTTGGTTCAAGAGAACGGTTGTGAG...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAACTGAATCGTGTCCCTTaGCTGCTTGGCTTGCTGCAT +
Preference number: 5 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKLNRVP*LLGLLH
Trigger: ATGCAGCAAGCCAAGCAGCAAAGGGACACGATTCAG...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR CAA 90 bp TGGGGTAGTTGGTATGCAACAAGGCTGAACAAGAGAACTGTAAAACAGTGTATCGATGCTTCTGGGTGTTaGCTGAGTTGTTCTGTTCTT +
Preference number: 5 (lower is better)
Translates to: WGSWYATRLNKRTVKQCIDASGC*LSCSVL
Trigger: AAGAACAGAACAACTCAGCAAACACCCAGAAGCATC...GATACACTGTTTTACAGTTCTCTTGTTCAGCCTTGTTGCATACCAACTACCCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS TCA 90 bp CACTTGCTTGCGATACAAAGGTCTTCCTCATTGGTTTTCCGACTCTaGGACATAGGAACTTATGTAATCGATGCCTTCGCTTTTCCTTTA +
Preference number: 5 (lower is better)
Translates to: HLLAIQRSSSLVFRL*DIGTYVIDAFAFPL
Trigger: TAAAGGAAAAGCGAAGGCATCGATTACATAAGTTCCTATGTCTCAGAGTCGGAAAACCAATGAGGAAGACCTTTGTATCGCAAGCAAGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS-3UTR CAA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGCTCACAACCGTTCTCTaGAACCAAGGGGTCTGTCTT +
Preference number: 5 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMLTTVL*NQGVCL
Trigger: AAGACAGACCCCTTGGTTCAAGAGAACGGTTGTGAG...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGCTCACAACCGTTCTCTaGAACCAAGGGGTCTGTCTT +
Preference number: 5 (lower is better)
Translates to: RIVATWLIVGFLQERIQLLTTVL*NQGVCL
Trigger: AAGACAGACCCCTTGGTTCAAGAGAACGGTTGTGAG...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAACTCACAACCGTTCTCTaGAACCAAGGGGTCTGTCTT +
Preference number: 5 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKLTTVL*NQGVCL
Trigger: AAGACAGACCCCTTGGTTCAAGAGAACGGTTGTGAG...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR CAA 90 bp CACTATTACCTAACTTGTAATGAGAGCTTTACACAGACGAGGAAACGATGCCGTCTATCCAAAATCTCTTaGTACATGGCAGCTGACATC +
Preference number: 5 (lower is better)
Translates to: HYYLTCNESFTQTRKRCRLSKIS*YMAADI
Trigger: GATGTCAGCTGCCATGTACAAAGAGATTTTGGATAG...ACGGCATCGTTTCCTCGTCTGTGTAAAGCTCTCATTACAAGTTAGGTAATAGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTCTGTGCTTTGTTCCTTaGGGCCTGAGACTTCTTGAA +
Preference number: 5 (lower is better)
Translates to: LNYSIVYYSHCPFIRADALCFVP*GLRLLE
Trigger: TTCAAGAAGTCTCAGGCCCAAAGGAACAAAGCACAG...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCACTGTGCTTTGTTCCTTaGGGCCTGAGACTTCTTGAA +
Preference number: 5 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLALCFVP*GLRLLE
Trigger: TTCAAGAAGTCTCAGGCCCAAAGGAACAAAGCACAG...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCACCTTTGCTGCTTGGCTaGCTGCATAGAGTGAGTTTT +
Preference number: 5 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLAPLLLG*LHRVSF
Trigger: AAAACTCACTCTATGCAGCAAGCCAAGCAGCAAAGG...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCACATCGTAGCACTTGCTaGCGATACAAAGGTCTTCCT +
Preference number: 5 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLAHRSTC*RYKGLP
Trigger: AGGAAGACCTTTGTATCGCAAGCAAGTGCTACGATG...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCAGTGGTCTGTCCTTTCTaGTGGCACTGCAAACCAATA +
Preference number: 5 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLAVVCPF*WHCKPI
Trigger: TATTGGTTTGCAGTGCCACAAGAAAGGACAGACCAC...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTGTGGTCTGTCCTTTCTaGTGGCACTGCAAACCAATA +
Preference number: 5 (lower is better)
Translates to: LNYSIVYYSHCPFIRADAVVCPF*WHCKPI
Trigger: TATTGGTTTGCAGTGCCACAAGAAAGGACAGACCAC...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CTGAATTACAGTATTGTCTACTACAGTCACTGCCCTTTTATAAGAGCAGATGCTACCAAGGGGTCTGTCTaGTGTGGATCAAACATTATG +
Preference number: 5 (lower is better)
Translates to: LNYSIVYYSHCPFIRADATKGSV*CGSNIM
Trigger: CATAATGTTTGATCCACACAAGACAGACCCCTTGGT...AGCATCTGCTCTTATAAAAGGGCAGTGACTGTAGTAGACAATACTGTAATTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCAACCAAGGGGTCTGTCTaGTGTGGATCAAACATTATG +
Preference number: 5 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLATKGSV*CGSNIM
Trigger: CATAATGTTTGATCCACACAAGACAGACCCCTTGGT...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGCTGTGCTTTGTTCCTTaGGGCCTGAGACTTCTTGAA +
Preference number: 5 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMLCFVP*GLRLLE
Trigger: TTCAAGAAGTCTCAGGCCCAAAGGAACAAAGCACAG...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAACTGTGCTTTGTTCCTTaGGGCCTGAGACTTCTTGAA +
Preference number: 5 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKLCFVP*GLRLLE
Trigger: TTCAAGAAGTCTCAGGCCCAAAGGAACAAAGCACAG...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR CAA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAACCTTTGCTGCTTGGCTaGCTGCATAGAGTGAGTTTT +
Preference number: 5 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKPLLLG*LHRVSF
Trigger: AAAACTCACTCTATGCAGCAAGCCAAGCAGCAAAGG...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR CAA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGCATCGTAGCACTTGCTaGCGATACAAAGGTCTTCCT +
Preference number: 5 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMHRSTC*RYKGLP
Trigger: AGGAAGACCTTTGTATCGCAAGCAAGTGCTACGATG...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAACATCGTAGCACTTGCTaGCGATACAAAGGTCTTCCT +
Preference number: 5 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKHRSTC*RYKGLP
Trigger: AGGAAGACCTTTGTATCGCAAGCAAGTGCTACGATG...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR CAA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGGTGGTCTGTCCTTTCTaGTGGCACTGCAAACCAATA +
Preference number: 5 (lower is better)
Translates to: RIVATWLIVGFLQERIQLVVCPF*WHCKPI
Trigger: TATTGGTTTGCAGTGCCACAAGAAAGGACAGACCAC...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGGTGGTCTGTCCTTTCTaGTGGCACTGCAAACCAATA +
Preference number: 5 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMVVCPF*WHCKPI
Trigger: TATTGGTTTGCAGTGCCACAAGAAAGGACAGACCAC...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAAGTGGTCTGTCCTTTCTaGTGGCACTGCAAACCAATA +
Preference number: 5 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKVVCPF*WHCKPI
Trigger: TATTGGTTTGCAGTGCCACAAGAAAGGACAGACCAC...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR CAA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCATGGGTGTTTGCTGAGTaGTTCTGTTCTTCTTCGATG +
Preference number: 5 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLAWVFAE*FCSSSM
Trigger: CATCGAAGAAGAACAGAACAACTCAGCAAACACCCA...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS TCA 90 bp AAAACCTGTCCAGTCACGACTGCTCGAGAGAATAACTTATTTAACTaGACAAGTTCATTGGGTGTGGTATCAAATTTCAGGGCTATGCTA +
Preference number: 5 (lower is better)
Translates to: KTCPVTTARENNLFN*TSSLGVVSNFRAML
Trigger: TAGCATAGCCCTGAAATTTGATACCACACCCAATGAACTTGTTCAGTTAAATAAGTTATTCTCTCGAGCAGTCGTGACTGGACAGGTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000229769.2
ENSMUST00000229836.2
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS GCA 90 bp TTCCTGACAACTGATCTAGTTCTATGGGCAGTGATTCCTTTATTTTaGTATCCAAAATCTCTTTGTACATGGCAGCTGACATCACCTCTT +
Preference number: 5 (lower is better)
Translates to: FLTTDLVLWAVIPLF*YPKSLCTWQLTSPL
Trigger: AAGAGGTGATGTCAGCTGCCATGTACAAAGAGATTTTGGATAGCAAAATAAAGGAATCACTGCCCATAGAACTAGATCAGTTGTCAGGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000229769.2
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS-3UTR CAA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGCTTCTTCTTCAGAAGTaGAAGACACAACTCTCGCAG +
Preference number: 5 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMLLLQK*KTQLSQ
Trigger: CTGCGAGAGTTGTGTCTTCAACTTCTGAAGAAGAAG...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGCTTCTTCTTCAGAAGTaGAAGACACAACTCTCGCAG +
Preference number: 5 (lower is better)
Translates to: RIVATWLIVGFLQERIQLLLLQK*KTQLSQ
Trigger: CTGCGAGAGTTGTGTCTTCAACTTCTGAAGAAGAAG...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAACTTCTTCTTCAGAAGTaGAAGACACAACTCTCGCAG +
Preference number: 5 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKLLLQK*KTQLSQ
Trigger: CTGCGAGAGTTGTGTCTTCAACTTCTGAAGAAGAAG...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR CAA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGACCAAGGGGTCTGTCTaGTGTGGATCAAACATTATG +
Preference number: 5 (lower is better)
Translates to: RIVATWLIVGFLQERIQLTKGSV*CGSNIM
Trigger: CATAATGTTTGATCCACACAAGACAGACCCCTTGGT...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAAACCAAGGGGTCTGTCTaGTGTGGATCAAACATTATG +
Preference number: 5 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKTKGSV*CGSNIM
Trigger: CATAATGTTTGATCCACACAAGACAGACCCCTTGGT...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR CAA 90 bp TTGCTAGTTTATTCTACCTTTTCGTTTTTGAGGCCACTTGACAGTAAGCTTGCACTATCCAAAATCTCTTaGTACATGGCAGCTGACATC +
Preference number: 5 (lower is better)
Translates to: LLVYSTFSFLRPLDSKLALSKIS*YMAADI
Trigger: GATGTCAGCTGCCATGTACAAAGAGATTTTGGATAG...TGCAAGCTTACTGTCAAGTGGCCTCAAAAACGAAAAGGTAGAATAAACTAGCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGGATGCTTCTGGGTGTTaGCTGAGTTGTTCTGTTCTT +
Preference number: 5 (lower is better)
Translates to: RIVATWLIVGFLQERIQLDASGC*LSCSVL
Trigger: AAGAACAGAACAACTCAGCAAACACCCAGAAGCATC...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGCTATCCAAAATCTCTTaGTACATGGCAGCTGACATC +
Preference number: 5 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMLSKIS*YMAADI
Trigger: GATGTCAGCTGCCATGTACAAAGAGATTTTGGATAG...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CGAATTGTTGCCACATGGCTTATTGTTGGTTTCCTACAAGAAAGAATACAATTGCTATCCAAAATCTCTTaGTACATGGCAGCTGACATC +
Preference number: 5 (lower is better)
Translates to: RIVATWLIVGFLQERIQLLSKIS*YMAADI
Trigger: GATGTCAGCTGCCATGTACAAAGAGATTTTGGATAG...CAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATGTGGCAACAATTCG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS-3UTR CAA 90 bp CAGACTCATTCAATAAACACATTTGGGCCTGGACTACAAACTATGTCTTCAAAACTATCCAAAATCTCTTaGTACATGGCAGCTGACATC +
Preference number: 5 (lower is better)
Translates to: QTHSINTFGPGLQTMSSKLSKIS*YMAADI
Trigger: GATGTCAGCTGCCATGTACAAAGAGATTTTGGATAG...TTTTGAAGACATAGTTTGTAGTCCAGGCCCAAATGTGTTTATTGAATGAGTCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS-3UTR CAA 90 bp ATTGAATTCCCATTCTCCTCTGTCAATTCTCCTCTATTCAGTGATGAAAACATGCTTCTCCCATCTTTCTaGTCTAAGGTCTTCTTTTGG +
Preference number: 5 (lower is better)
Translates to: IEFPFSSVNSPLFSDENMLLPSF*SKVFFW
Trigger: CCAAAAGAAGACCTTAGACAAGAAAGATGGGAGAAG...CATGTTTTCATCACTGAATAGAGGAGAATTGACAGAGGAGAATGGGAATTCAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000230203.2
CDS TCA 90 bp GAATCCCTTGATTCAACAGTATATTCAATGGTTCCTTTAGGCTTCTaGAAAGACATCCTTCTCCCATCTTTCTTGTCTAAGGTCTTCTTT +
Preference number: 5 (lower is better)
Translates to: ESLDSTVYSMVPLGF*KDILLPSFLSKVFF
Trigger: AAAGAAGACCTTAGACAAGAAAGATGGGAGAAGGATGTCTTTTCAGAAGCCTAAAGGAACCATTGAATATACTGTTGAATCAAGGGATTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000229769.2
ENSMUST00000229836.2
ENSMUST00000230203.2
CDS GCA 90 bp TTAACTGAACAAGTTCATTGGGTGTGGTATCAAATTTCAGGGCTATaGTATTCAAAGAATCCCTTGATTCAACAGTATATTCAATGGTTC +
Preference number: 5 (lower is better)
Translates to: LTEQVHWVWYQISGL*YSKNPLIQQYIQWF
Trigger: GAACCATTGAATATACTGTTGAATCAAGGGATTCTTTGAATAGCATAGCCCTGAAATTTGATACCACACCCAATGAACTTGTTCAGTTAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000229769.2
ENSMUST00000229836.2
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS CCA 72 bp AGGTCTTCTTTTGGCCAGTGTCCGGTCCCTCGGGACTaGCCGGCGAGGGCGGTCGGAGCTCCTCCGGCCCGC +
Preference number: 6 (lower is better)
Translates to: RSSFGQCPVPRD*PARAVGAPPAR
Trigger: GCGGGCCGGAGGAGCTCCGACCGCCCTCGCCGGCCAGTCCCGAGGGACCGGACACTGGCCAAAAGAAGACCT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170127.9
CDS CCA 72 bp GTGCTCCTGGGAGCAGTGCTGGCACTGTCGTTACCCTaGTCACGCGCTCTCGGGTCTGCGTCCTCAGCAGAG +
Preference number: 6 (lower is better)
Translates to: VLLGAVLALSLP*SRALGSASSAE
Trigger: CTCTGCTGAGGACGCAGACCCGAGAGCGCGTGACCAGGGTAACGACAGTGCCAGCACTGCTCCCAGGAGCAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000229769.2
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS CCA 72 bp CCGAGAGAGACTCCTCGGTGCTCCTGGGAGCAGTGCTaGCACTGTCGTTACCCTGGTCACGCGCTCTCGGGT +
Preference number: 6 (lower is better)
Translates to: PRETPRCSWEQC*HCRYPGHALSG
Trigger: ACCCGAGAGCGCGTGACCAGGGTAACGACAGTGCCAGCACTGCTCCCAGGAGCACCGAGGAGTCTCTCTCGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000229769.2
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS GCA 72 bp CTCAGCCACCGACACTACCTCCCACTCCCTGGCTGCTaGTTCACCAGCAGGGGCTTCATTCGCTTCAGACTC +
Preference number: 6 (lower is better)
Translates to: LSHRHYLPLPGC*FTSRGFIRFRL
Trigger: GAGTCTGAAGCGAATGAAGCCCCTGCTGGTGAAGCAGCAGCCAGGGAGTGGGAGGTAGTGTCGGTGGCTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022918.15
ENSMUST00000110297.10
CDS GCA 72 bp CACAACTCTCGCAGGCCGAATACCGCTCACAGTCGATaGCGGGGGTGCTTCTTTTGGATGGGCTACATCTGG +
Preference number: 6 (lower is better)
Translates to: HNSRRPNTAHSR*RGCFFWMGYIW
Trigger: CCAGATGTAGCCCATCCAAAAGAAGCACCCCCGGCATCGACTGTGAGCGGTATTCGGCCTGCGAGAGTTGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000229769.2
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS GCA 72 bp ATACTCAGCCACCGACACTACCTCCCACTCCCTGGCTaGTGCTTCACCAGCAGGGGCTTCATTCGCTTCAGA +
Preference number: 6 (lower is better)
Translates to: ILSHRHYLPLPG*CFTSRGFIRFR
Trigger: TCTGAAGCGAATGAAGCCCCTGCTGGTGAAGCAGCAGCCAGGGAGTGGGAGGTAGTGTCGGTGGCTGAGTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022918.15
ENSMUST00000110297.10
CDS GCA 72 bp GTTGTTCTGTTCTTCTTCGATGATGGGGGTCTTGGGTaGCGGGGGCTTGCTGGCTTGTGGTGCTTGCTTCCC +
Preference number: 6 (lower is better)
Translates to: VVLFFFDDGGLG*RGLAGLWCLLP
Trigger: GGGAAGCAAGCACCACAAGCCAGCAAGCCCCCGGCACCCAAGACCCCCATCATCGAAGAAGAACAGAACAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS GCA 72 bp TGGAAGTCTTGCCCTCCTTACCTCCCACTCCCTGGCTaGTGCTTCACCAGCAGGGGCTTCATTCGCTTCAGA +
Preference number: 6 (lower is better)
Translates to: WKSCPPYLPLPG*CFTSRGFIRFR
Trigger: TCTGAAGCGAATGAAGCCCCTGCTGGTGAAGCAGCAGCCAGGGAGTGGGAGGTAAGGAGGGCAAGACTTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230778.2
CDS CAA 90 bp TTGTTCTGTTCTTCTTCGATGATGGGGGTCTTGGGTGCCGGGGGCTaGCTGGCTTGTGGTGCTTGCTTCCCTGCACCACCTAAAGGGTTG +
Preference number: 6 (lower is better)
Translates to: LFCSSSMMGVLGAGG*LACGACFPAPPKGL
Trigger: CAACCCTTTAGGTGGTGCAGGGAAGCAAGCACCACAAGCCAGCAAGCCCCCGGCACCCAAGACCCCCATCATCGAAGAAGAACAGAACAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS CCA 72 bp ATCCTTCTCCCATCTTTCTTGTCTAAGGTCTTCTTTTaGCCAGTGTCCGGTCCCTCGGGACTGGCCGGCGAG +
Preference number: 6 (lower is better)
Translates to: ILLPSFLSKVFF*PVSGPSGLAGE
Trigger: CTCGCCGGCCAGTCCCGAGGGACCGGACACTGGCCAAAAGAAGACCTTAGACAAGAAAGATGGGAGAAGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170127.9
CDS CAA 90 bp GCGCTCTCGGGTCTGCGTCCTCAGCAGAGACTCCTGTCGCTTTCTTaGAATGGCAGGACCCCCTTCCTGACAACTGATCTAGTTCTATGG +
Preference number: 6 (lower is better)
Translates to: ALSGLRPQQRLLSLS*NGRTPFLTTDLVLW
Trigger: CCATAGAACTAGATCAGTTGTCAGGAAGGGGGTCCTGCCATTCAAAGAAAGCGACAGGAGTCTCTGCTGAGGACGCAGACCCGAGAGCGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000229769.2
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS TCA 72 bp TCTGGGTGTTTGCTGAGTTGTTCTGTTCTTCTTCGATaGTGGGGGTCTTGGGTGCCGGGGGCTTGCTGGCTT +
Preference number: 6 (lower is better)
Translates to: SGCLLSCSVLLR*WGSWVPGACWL
Trigger: AAGCCAGCAAGCCCCCGGCACCCAAGACCCCCATCATCGAAGAAGAACAGAACAACTCAGCAAACACCCAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS GCA 72 bp GTCTTCCCTTGTAGTAATCTCCCACTCCCTGGCTGCTaGTTCACCAGCAGGGGCTTCATTCGCTTCAGACTC +
Preference number: 6 (lower is better)
Translates to: VFPCSNLPLPGC*FTSRGFIRFRL
Trigger: GAGTCTGAAGCGAATGAAGCCCCTGCTGGTGAAGCAGCAGCCAGGGAGTGGGAGATTACTACAAGGGAAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS TCA 72 bp GCCTCTGACGTGGCTGTCAAGGACTGGACTTCCATCTaGCTGACAGTCTGCACAGATTCTGACGAGGCATCA +
Preference number: 6 (lower is better)
Translates to: ASDVAVKDWTSI*LTVCTDSDEAS
Trigger: TGATGCCTCGTCAGAATCTGTGCAGACTGTCAGTCAGATGGAAGTCCAGTCCTTGACAGCCACGTCAGAGGC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000229769.2
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS GCA 72 bp GATGTCTTCCCTTGTAGTAATCTCCCACTCCCTGGCTaGTGCTTCACCAGCAGGGGCTTCATTCGCTTCAGA +
Preference number: 6 (lower is better)
Translates to: DVFPCSNLPLPG*CFTSRGFIRFR
Trigger: TCTGAAGCGAATGAAGCCCCTGCTGGTGAAGCAGCAGCCAGGGAGTGGGAGATTACTACAAGGGAAGACATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS CAA 72 bp GGTCTGCGTCCTCAGCAGAGACTCCTGTCGCTTTCTTaGAATGGCAGGACCCCCTTCCTGACAACTGATCTA +
Preference number: 6 (lower is better)
Translates to: GLRPQQRLLSLS*NGRTPFLTTDL
Trigger: TAGATCAGTTGTCAGGAAGGGGGTCCTGCCATTCAAAGAAAGCGACAGGAGTCTCTGCTGAGGACGCAGACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000229769.2
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS TCA 72 bp ATCTGGAGTCGTGGTTTTATCAAATTCAGCCTCGGATaGCGTTGGCGACAGAGGGCTTACAGGGCTGAGGGA +
Preference number: 6 (lower is better)
Translates to: IWSRGFIKFSLG*RWRQRAYRAEG
Trigger: TCCCTCAGCCCTGTAAGCCCTCTGTCGCCAACGTCATCCGAGGCTGAATTTGATAAAACCACGACTCCAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000229769.2
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS TCA 72 bp CTGACGTGGCTGTCAAGGACTGGACTTCCATCTGACTaGCAGTCTGCACAGATTCTGACGAGGCATCAGATG +
Preference number: 6 (lower is better)
Translates to: LTWLSRTGLPSD*QSAQILTRHQM
Trigger: CATCTGATGCCTCGTCAGAATCTGTGCAGACTGTCAGTCAGATGGAAGTCCAGTCCTTGACAGCCACGTCAG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000229769.2
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS GCA 72 bp GTGTGCGCAGTTCTTCAGTATTTAGAGCATCGATCCTaGGGTGATACTCAGCCACCGACACTACCTCCCACT +
Preference number: 6 (lower is better)
Translates to: VCAVLQYLEHRS*GDTQPPTLPPT
Trigger: AGTGGGAGGTAGTGTCGGTGGCTGAGTATCACCGCAGGATCGATGCTCTAAATACTGAAGAACTGCGCACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022918.15
ENSMUST00000110297.10
CDS CAA 90 bp GATTCAGGCTCCAGGTCTGCTTTTGCTGGAGCAACCTGCTTTGAGTaGATGTCTTCCCTTGTAGTAATCTCCCACTCCCTGGCTGCTGCT +
Preference number: 6 (lower is better)
Translates to: DSGSRSAFAGATCFE*MSSLVVISHSLAAA
Trigger: AGCAGCAGCCAGGGAGTGGGAGATTACTACAAGGGAAGACATCAACTCAAAGCAGGTTGCTCCAGCAAAAGCAGACCTGGAGCCTGAATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS CAA 90 bp GGCTTGCTGGCTTGTGGTGCTTGCTTCCCTGCACCACCTAAAGGGTaGAACCCTGGAGCAGTAATATCCACTGACTGGGACTTTTTCTTC +
Preference number: 6 (lower is better)
Translates to: GLLACGACFPAPPKG*NPGAVISTDWDFFF
Trigger: GAAGAAAAAGTCCCAGTCAGTGGATATTACTGCTCCAGGGTTCAACCCTTTAGGTGGTGCAGGGAAGCAAGCACCACAAGCCAGCAAGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS CAA 90 bp GATTCAGGCTCCAGGTCTGCTTTTGCTGGAGCAACCTGCTTTGAGTaGATGTCTTCCCTTGTAGTAATCTGGAGCCGTCTGCAGAGTGTG +
Preference number: 6 (lower is better)
Translates to: DSGSRSAFAGATCFE*MSSLVVIWSRLQSV
Trigger: CACACTCTGCAGACGGCTCCAGATTACTACAAGGGAAGACATCAACTCAAAGCAGGTTGCTCCAGCAAAAGCAGACCTGGAGCCTGAATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022918.15
ENSMUST00000110297.10
ENSMUST00000230131.2
CDS TCA 72 bp GCGCTGCTGTGTTTACTTTCTCTCTGTGACACCTGCTaGATCGTGTCCCTTTGCTGCTTGGCTTGCTGCATA +
Preference number: 6 (lower is better)
Translates to: ALLCLLSLCDTC*IVSLCCLACCI
Trigger: TATGCAGCAAGCCAAGCAGCAAAGGGACACGATTCAGCAGGTGTCACAGAGAGAAAGTAAACACAGCAGCGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS TCA 72 bp TGCACATTTCAATACTGCTTCTTGGAAGTCCCAGTGTaGGCTGACGCTTGGACATGTCAGGAAGGCACCAGC +
Preference number: 6 (lower is better)
Translates to: CTFQYCFLEVPV*ADAWTCQEGTS
Trigger: GCTGGTGCCTTCCTGACATGTCCAAGCGTCAGCTCACACTGGGACTTCCAAGAAGCAGTATTGAAATGTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231215.2
CDS GCA 72 bp GTGTGCGCAGTTCTTCAGTATTTAGAGCATCGATCCTaGGGTGATACTCAGCCACCGACACTACCAGAGTGT +
Preference number: 6 (lower is better)
Translates to: VCAVLQYLEHRS*GDTQPPTLPEC
Trigger: ACACTCTGGTAGTGTCGGTGGCTGAGTATCACCGCAGGATCGATGCTCTAAATACTGAAGAACTGCGCACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230131.2
CDS CAA 72 bp GATCAGGCAGTAAGAGTTCACTGGGGTCGCTTAGGTTaGGTCGGAAAGATTCAGGCTCCAGGTCTGCTTTTG +
Preference number: 6 (lower is better)
Translates to: DQAVRVHWGRLG*VGKIQAPGLLL
Trigger: CAAAAGCAGACCTGGAGCCTGAATCTTTCCGACCAAACCTAAGCGACCCCAGTGAACTCTTACTGCCTGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000166917.3
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230127.2
ENSMUST00000230131.2
ENSMUST00000230203.2
CDS TCA 72 bp ACATGGCAGCTGACATCACCTCTTCCATCGGACACATaGTGCCGTATTCCTCACAACCGTTCTCTTGAACCA +
Preference number: 6 (lower is better)
Translates to: TWQLTSPLPSDT*CRIPHNRSLEP
Trigger: TGGTTCAAGAGAACGGTTGTGAGGAATACGGCATCATGTGTCCGATGGAAGAGGTGATGTCAGCTGCCATGT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000229769.2
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS TCA 72 bp ATTTCAATACTGCTTCTTGGAAGTCCCAGTGTGAGCTaGCGCTTGGACATGTCAGGAAGGCACCAGCAGCTT +
Preference number: 6 (lower is better)
Translates to: ISILLLGSPSVS*RLDMSGRHQQL
Trigger: AAGCTGCTGGTGCCTTCCTGACATGTCCAAGCGTCAGCTCACACTGGGACTTCCAAGAAGCAGTATTGAAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231215.2
CDS CAA 90 bp TTTCAATCTGATCAGGCAGTAAGAGTTCACTGGGGTCGCTTAGGTTaGGTCGGAAAGATTCAGGCTCCAGGTCTGCTTTTGCTGGAGCAA +
Preference number: 6 (lower is better)
Translates to: FQSDQAVRVHWGRLG*VGKIQAPGLLLLEQ
Trigger: TTGCTCCAGCAAAAGCAGACCTGGAGCCTGAATCTTTCCGACCAAACCTAAGCGACCCCAGTGAACTCTTACTGCCTGATCAGATTGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 10 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000166917.3
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230127.2
ENSMUST00000230131.2
ENSMUST00000230203.2
CDS TCA 72 bp AGAAGATACACTGTCTTCACCTGCCTCTTGCTGCAGTaGACTTTCCTGGTGGGAAGAATCCTGGTTATCCTG +
Preference number: 6 (lower is better)
Translates to: RRYTVFTCLLLQ*TFLVGRILVIL
Trigger: CAGGATAACCAGGATTCTTCCCACCAGGAAAGTTCACTGCAGCAAGAGGCAGGTGAAGACAGTGTATCTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000229769.2
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS GCA 72 bp TCTCCAGAAGATACACTGTCTTCACCTGCCTCTTGCTaGAGTGAACTTTCCTGGTGGGAAGAATCCTGGTTA +
Preference number: 6 (lower is better)
Translates to: SPEDTLSSPASC*SELSWWEESWL
Trigger: TAACCAGGATTCTTCCCACCAGGAAAGTTCACTGCAGCAAGAGGCAGGTGAAGACAGTGTATCTTCTGGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000229769.2
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS GCA 72 bp GATTCAGGCTCCAGGTCTGCTTTTGCTGGAGCAACCTaGTTTGAGTTGATGTCTTCCCTTGTAGTAATCTGG +
Preference number: 6 (lower is better)
Translates to: DSGSRSAFAGAT*FELMSSLVVIW
Trigger: CCAGATTACTACAAGGGAAGACATCAACTCAAAGCAGGTTGCTCCAGCAAAAGCAGACCTGGAGCCTGAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022918.15
ENSMUST00000110297.10
ENSMUST00000230131.2
CDS GCA 72 bp GATTCAGGCTCCAGGTCTGCTTTTGCTGGAGCAACCTaGTTTGAGTTGATGTCTTCCCTTGTAGTAATCTCC +
Preference number: 6 (lower is better)
Translates to: DSGSRSAFAGAT*FELMSSLVVIS
Trigger: GGAGATTACTACAAGGGAAGACATCAACTCAAAGCAGGTTGCTCCAGCAAAAGCAGACCTGGAGCCTGAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
CDS CAA 72 bp CGGACACATGATGCCGTATTCCTCACAACCGTTCTCTaGAACCAAGGGGTCTGTCTTGTGTGGATCAAACAT +
Preference number: 6 (lower is better)
Translates to: RTHDAVFLTTVL*NQGVCLVWIKH
Trigger: ATGTTTGATCCACACAAGACAGACCCCTTGGTTCAAGAGAACGGTTGTGAGGAATACGGCATCATGTGTCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000229769.2
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS CAA 90 bp GCTTCACCAGCAGGGGCTTCATTCGCTTCAGACTCGTCCATCTTTTaGACTACTATGAATCCAGGCTCTCTGGTGTATTCACCAGAATCT +
Preference number: 6 (lower is better)
Translates to: ASPAGASFASDSSIF*TTMNPGSLVYSPES
Trigger: AGATTCTGGTGAATACACCAGAGAGCCTGGATTCATAGTAGTCAAAAAGATGGACGAGTCTGAAGCGAATGAAGCCCCTGCTGGTGAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS CAA 90 bp GATTCAGGCTCCAGGTCTGCTTTTGCTGGAGCAACCTGCTTTGAGTaGATGTCTTCCCTTGTAGTAATTAACTCATTCTGTGAGGCCAGC +
Preference number: 6 (lower is better)
Translates to: DSGSRSAFAGATCFE*MSSLVVINSFCEAS
Trigger: GCTGGCCTCACAGAATGAGTTAATTACTACAAGGGAAGACATCAACTCAAAGCAGGTTGCTCCAGCAAAAGCAGACCTGGAGCCTGAATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230127.2
CDS TCA 72 bp GGACACATGATGCCGTATTCCTCACAACCGTTCTCTTaGACCAAGGGGTCTGTCTTGTGTGGATCAAACATT +
Preference number: 6 (lower is better)
Translates to: GHMMPYSSQPFS*TKGSVLCGSNI
Trigger: AATGTTTGATCCACACAAGACAGACCCCTTGGTTCAAGAGAACGGTTGTGAGGAATACGGCATCATGTGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000229769.2
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS TCA 72 bp CGCAGTTCTTCAGTATTTAGAGCATCGATCCTGCGGTaGTACTCAGCCACCGACACTACCAGAGTGTATTTA +
Preference number: 6 (lower is better)
Translates to: RSSSVFRASILR*YSATDTTRVYL
Trigger: TAAATACACTCTGGTAGTGTCGGTGGCTGAGTATCACCGCAGGATCGATGCTCTAAATACTGAAGAACTGCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230131.2
CDS GCA 72 bp GATTCAGGCTCCAGGTCTGCTTTTGCTGGAGCAACCTaGTTTGAGTTGATGTCTTCCCTTGTAGTAATCAGA +
Preference number: 6 (lower is better)
Translates to: DSGSRSAFAGAT*FELMSSLVVIR
Trigger: TCTGATTACTACAAGGGAAGACATCAACTCAAAGCAGGTTGCTCCAGCAAAAGCAGACCTGGAGCCTGAATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166917.3
CDS GCA 72 bp GCCCTTATCTCTGTCACTCTTCCAGCCACCTCAGACTaGAATGACCAACATGCACATTTCAATACTGCTTCT +
Preference number: 6 (lower is better)
Translates to: ALISVTLPATSD*NDQHAHFNTAS
Trigger: AGAAGCAGTATTGAAATGTGCATGTTGGTCATTGCAGTCTGAGGTGGCTGGAAGAGTGACAGAGATAAGGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231215.2
CDS CCA 72 bp TGCAATGACCAACATGCACATTTCAATACTGCTTCTTaGAAGTCCCAGTGTGAGCTGACGCTTGGACATGTC +
Preference number: 6 (lower is better)
Translates to: CNDQHAHFNTAS*KSQCELTLGHV
Trigger: GACATGTCCAAGCGTCAGCTCACACTGGGACTTCCAAGAAGCAGTATTGAAATGTGCATGTTGGTCATTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231215.2
CDS CAA 72 bp GCAGGGGCTTCATTCGCTTCAGACTCGTCCATCTTTTaGACTACTATGAATCCAGGCTCTCTGGTGTATTCA +
Preference number: 6 (lower is better)
Translates to: AGASFASDSSIF*TTMNPGSLVYS
Trigger: TGAATACACCAGAGAGCCTGGATTCATAGTAGTCAAAAAGATGGACGAGTCTGAAGCGAATGAAGCCCCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS CAA 72 bp CTTTTTCTGGAAGGATGCTTCTGGGTGTTTGCTGAGTaGTTCTGTTCTTCTTCGATGATGGGGGTCTTGGGT +
Preference number: 6 (lower is better)
Translates to: LFLEGCFWVFAE*FCSSSMMGVLG
Trigger: ACCCAAGACCCCCATCATCGAAGAAGAACAGAACAACTCAGCAAACACCCAGAAGCATCCTTCCAGAAAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS GCA 72 bp TTTCCGACTCTGAGACATAGGAACTTATGTAATCGATaGCTTCGCTTTTCCTTTAACAGCGAGGAGCCCTCT +
Preference number: 6 (lower is better)
Translates to: FPTLRHRNLCNR*LRFSFNSEEPS
Trigger: AGAGGGCTCCTCGCTGTTAAAGGAAAAGCGAAGGCATCGATTACATAAGTTCCTATGTCTCAGAGTCGGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS GCA 72 bp GAATCCAGGCTCTCTGGTGTATTCACCAGAATCTTCTaGATAGATTTCTGGACTCCACTGAATGAAGAAGGC +
Preference number: 6 (lower is better)
Translates to: ESRLSGVFTRIF*IDFWTPLNEEG
Trigger: GCCTTCTTCATTCAGTGGAGTCCAGAAATCTATGCAGAAGATTCTGGTGAATACACCAGAGAGCCTGGATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS GCA 72 bp GATTCAGGCTCCAGGTCTGCTTTTGCTGGAGCAACCTaGTTTGAGTTGATGTCTTCCCTTGTAGTAATTAAC +
Preference number: 6 (lower is better)
Translates to: DSGSRSAFAGAT*FELMSSLVVIN
Trigger: GTTAATTACTACAAGGGAAGACATCAACTCAAAGCAGGTTGCTCCAGCAAAAGCAGACCTGGAGCCTGAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230127.2
CDS CAA 90 bp CTCTTCCATCGGACACATGATGCCGTATTCCTCACAACCGTTCTCTaGAACCAAGGGGTCTGTCTTGTGTGGATCAAACATTATGTTATT +
Preference number: 6 (lower is better)
Translates to: LFHRTHDAVFLTTVL*NQGVCLVWIKHYVI
Trigger: AATAACATAATGTTTGATCCACACAAGACAGACCCCTTGGTTCAAGAGAACGGTTGTGAGGAATACGGCATCATGTGTCCGATGGAAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000229769.2
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS TCA 72 bp GCTTTCTTTGAATGGCAGGACCCCCTTCCTGACAACTaGTCTAGTTCTATGGGCAGTGATTCCTTTATTTTG +
Preference number: 6 (lower is better)
Translates to: AFFEWQDPLPDN*SSSMGSDSFIL
Trigger: CAAAATAAAGGAATCACTGCCCATAGAACTAGATCAGTTGTCAGGAAGGGGGTCCTGCCATTCAAAGAAAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000229769.2
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS TCA 72 bp TCTGTCTCTGAGTCCCGTTTTAGCTCCTGCCCTTGTTaGTCCTTAAGAACAGCTGGTTTTTCTTTCAGTTCT +
Preference number: 6 (lower is better)
Translates to: SVSESRFSSCPC*SLRTAGFSFSS
Trigger: AGAACTGAAAGAAAAACCAGCTGTTCTTAAGGATCAACAAGGGCAGGAGCTAAAACGGGACTCAGAGACAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS TCA 72 bp GCGATACAAAGGTCTTCCTCATTGGTTTTCCGACTCTaGGACATAGGAACTTATGTAATCGATGCCTTCGCT +
Preference number: 6 (lower is better)
Translates to: AIQRSSSLVFRL*DIGTYVIDAFA
Trigger: AGCGAAGGCATCGATTACATAAGTTCCTATGTCTCAGAGTCGGAAAACCAATGAGGAAGACCTTTGTATCGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS TCA 72 bp TATCTCTGTCACTCTTCCAGCCACCTCAGACTGCAATaGCCAACATGCACATTTCAATACTGCTTCTTGGAA +
Preference number: 6 (lower is better)
Translates to: YLCHSSSHLRLQ*PTCTFQYCFLE
Trigger: TTCCAAGAAGCAGTATTGAAATGTGCATGTTGGTCATTGCAGTCTGAGGTGGCTGGAAGAGTGACAGAGATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231215.2
CDS CAA 72 bp ATCTCTTTGTGCATACTGTTGCATCGTAGCACTTGCTaGCGATACAAAGGTCTTCCTCATTGGTTTTCCGAC +
Preference number: 6 (lower is better)
Translates to: ISLCILLHRSTC*RYKGLPHWFSD
Trigger: GTCGGAAAACCAATGAGGAAGACCTTTGTATCGCAAGCAAGTGCTACGATGCAACAGTATGCACAAAGAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS CAA 90 bp GATTCAGGCTCCAGGTCTGCTTTTGCTGGAGCAACCTGCTTTGAGTaGATGTCTTCCCTTGTAGTAATCAGAGTGTATTTATGGTTAACT +
Preference number: 6 (lower is better)
Translates to: DSGSRSAFAGATCFE*MSSLVVIRVYLWLT
Trigger: AGTTAACCATAAATACACTCTGATTACTACAAGGGAAGACATCAACTCAAAGCAGGTTGCTCCAGCAAAAGCAGACCTGGAGCCTGAATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166917.3
CDS TCA 72 bp TATTTTGCTATCCAAAATCTCTTTGTACATGGCAGCTaGCATCACCTCTTCCATCGGACACATGATGCCGTA +
Preference number: 6 (lower is better)
Translates to: YFAIQNLFVHGS*HHLFHRTHDAV
Trigger: TACGGCATCATGTGTCCGATGGAAGAGGTGATGTCAGCTGCCATGTACAAAGAGATTTTGGATAGCAAAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000229769.2
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS CCA 72 bp AACCTCTTCAGTTCACTTTTTCTGGAAGGATGCTTCTaGGTGTTTGCTGAGTTGTTCTGTTCTTCTTCGATG +
Preference number: 6 (lower is better)
Translates to: NLFSSLFLEGCF*VFAELFCSSSM
Trigger: CATCGAAGAAGAACAGAACAACTCAGCAAACACCCAGAAGCATCCTTCCAGAAAAAGTGAACTGAAGAGGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2
CDS CAA 90 bp AGTTCTATGGGCAGTGATTCCTTTATTTTGCTATCCAAAATCTCTTaGTACATGGCAGCTGACATCACCTCTTCCATCGGACACATGATG +
Preference number: 6 (lower is better)
Translates to: SSMGSDSFILLSKIS*YMAADITSSIGHMM
Trigger: CATCATGTGTCCGATGGAAGAGGTGATGTCAGCTGCCATGTACAAAGAGATTTTGGATAGCAAAATAAAGGAATCACTGCCCATAGAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000229769.2
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS GCA 72 bp TTTATCTCTTTGTGCATACTGTTGCATCGTAGCACTTaGTTGCGATACAAAGGTCTTCCTCATTGGTTTTCC +
Preference number: 6 (lower is better)
Translates to: FISLCILLHRST*LRYKGLPHWFS
Trigger: GGAAAACCAATGAGGAAGACCTTTGTATCGCAAGCAAGTGCTACGATGCAACAGTATGCACAAAGAGATAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS TCA 72 bp CCAGTCACGACTGCTCGAGAGAATAACTTATTTAACTaGACAAGTTCATTGGGTGTGGTATCAAATTTCAGG +
Preference number: 6 (lower is better)
Translates to: PVTTARENNLFN*TSSLGVVSNFR
Trigger: CCTGAAATTTGATACCACACCCAATGAACTTGTTCAGTTAAATAAGTTATTCTCTCGAGCAGTCGTGACTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 10 transcripts:
ENSMUST00000022918.15
ENSMUST00000090095.13
ENSMUST00000090096.11
ENSMUST00000110297.10
ENSMUST00000170127.9
ENSMUST00000179393.8
ENSMUST00000229769.2
ENSMUST00000229836.2
ENSMUST00000230203.2
ENSMUST00000230778.2
CDS CCA 72 bp AAAGGGTTGAACCCTGGAGCAGTAATATCCACTGACTaGGACTTTTTCTTCAACCATGATAGATTAGATACA +
Preference number: 6 (lower is better)
Translates to: KGLNPGAVISTD*DFFFNHDRLDT
Trigger: TGTATCTAATCTATCATGGTTGAAGAAAAAGTCCCAGTCAGTGGATATTACTGCTCCAGGGTTCAACCCTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110297.10
ENSMUST00000230203.2