RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OVOL3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000100512

Ensembl transcript IDs: ENSMUST00000189482.2

Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp CGCCTCGCTGGGCTGTGGCATTTGAGGTGCCGAGTCAGCATGCGTTaGAGCGGGAAGGCCTTGGGGCAGAGTGGGCAGCCAAGTGTCCCG +
Preference number: 5 (lower is better)
Translates to: RLAGLWHLRCRVSMR*SGKALGQSGQPSVP
Trigger: CGGGACACTTGGCTGCCCACTCTGCCCCAAGGCCTTCCCGCTGCAACGCATGCTGACTCGGCACCTCAAATGCCACAGCCCAGCGAGGCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189482.2
CDS CCA 90 bp ACACACGTGCAGCTTCTCCCTGCGCTCCCGGTAAGCGTAGCTGGCTaGCTGCCCGTGCACCTTGGCAAGGTGAGCTTCCAGGGAACAGCG +
Preference number: 5 (lower is better)
Translates to: THVQLLPALPVSVAG*LPVHLGKVSFQGTA
Trigger: CGCTGTTCCCTGGAAGCTCACCTTGCCAAGGTGCACGGGCAGCCAGCCAGCTACGCTTACCGGGAGCGCAGGGAGAAGCTGCACGTGTGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189482.2
CDS TCA 90 bp TACCACAATAGTGGCACACGTGGCGCCTCGCTGGGCTGTGGCATTTaGGGTGCCGAGTCAGCATGCGTTGCAGCGGGAAGGCCTTGGGGC +
Preference number: 5 (lower is better)
Translates to: YHNSGTRGASLGCGI*GAESACVAAGRPWG
Trigger: GCCCCAAGGCCTTCCCGCTGCAACGCATGCTGACTCGGCACCTCAAATGCCACAGCCCAGCGAGGCGCCACGTGTGCCACTATTGTGGTA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189482.2
CDS TCA 90 bp GGTGTAGGGTGCGGTGCTGCGCATAAGCATCCGGCCGAGAGCTGGTaGAGCCACAGTCTTCACACACGTGCAGCTTCTCCCTGCGCTCCC +
Preference number: 5 (lower is better)
Translates to: GVGCGAAHKHPAESW*SHSLHTRAASPCAP
Trigger: GGGAGCGCAGGGAGAAGCTGCACGTGTGTGAAGACTGTGGCTTCACCAGCTCTCGGCCGGATGCTTATGCGCAGCACCGCACCCTACACC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189482.2
CDS CCA 90 bp CTTCACACACGTGCAGCTTCTCCCTGCGCTCCCGGTAAGCGTAGCTaGCTGGCTGCCCGTGCACCTTGGCAAGGTGAGCTTCCAGGGAAC +
Preference number: 5 (lower is better)
Translates to: LHTRAASPCAPGKRS*LAARAPWQGELPGN
Trigger: GTTCCCTGGAAGCTCACCTTGCCAAGGTGCACGGGCAGCCAGCCAGCTACGCTTACCGGGAGCGCAGGGAGAAGCTGCACGTGTGTGAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189482.2
CDS CCA 90 bp ATCGTGAAAGCCTTTACCACAATAGTGGCACACGTGGCGCCTCGCTaGGCTGTGGCATTTGAGGTGCCGAGTCAGCATGCGTTGCAGCGG +
Preference number: 5 (lower is better)
Translates to: IVKAFTTIVAHVAPR*AVAFEVPSQHALQR
Trigger: CCGCTGCAACGCATGCTGACTCGGCACCTCAAATGCCACAGCCCAGCGAGGCGCCACGTGTGCCACTATTGTGGTAAAGGCTTTCACGAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189482.2
CDS GCA 90 bp TGTCTCTCAGACCAGAAGATCTGTGTGCTGGTGGCACTGCCAGGCTaGTGCAGTCTGGGACATAAGCATCTCCCCGGAGCTGGTCAGGAA +
Preference number: 5 (lower is better)
Translates to: CLSDQKICVLVALPG*CSLGHKHLPGAGQE
Trigger: TTCCTGACCAGCTCCGGGGAGATGCTTATGTCCCAGACTGCAGCAGCCTGGCAGTGCCACCAGCACACAGATCTTCTGGTCTGAGAGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189482.2
CDS TCA 90 bp CGCAGCGGAATGGCCGTATTCCAGTGTGAGTCCTCATGTGACGCTTaGGATCGAAGGCATCGTGAAAGCCTTTACCACAATAGTGGCACA +
Preference number: 5 (lower is better)
Translates to: RSGMAVFQCESSCDA*DRRHRESLYHNSGT
Trigger: TGTGCCACTATTGTGGTAAAGGCTTTCACGATGCCTTCGATCTCAAGCGTCACATGAGGACTCACACTGGAATACGGCCATTCCGCTGCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189482.2
CDS CAA 90 bp GCGCCTCGCTGGGCTGTGGCATTTGAGGTGCCGAGTCAGCATGCGTaGCAGCGGGAAGGCCTTGGGGCAGAGTGGGCAGCCAAGTGTCCC +
Preference number: 6 (lower is better)
Translates to: APRWAVAFEVPSQHA*QREGLGAEWAAKCP
Trigger: GGGACACTTGGCTGCCCACTCTGCCCCAAGGCCTTCCCGCTGCAACGCATGCTGACTCGGCACCTCAAATGCCACAGCCCAGCGAGGCGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189482.2
CDS TCA 72 bp AGTGGCACACGTGGCGCCTCGCTGGGCTGTGGCATTTaGGGTGCCGAGTCAGCATGCGTTGCAGCGGGAAGG +
Preference number: 6 (lower is better)
Translates to: SGTRGASLGCGI*GAESACVAAGR
Trigger: CCTTCCCGCTGCAACGCATGCTGACTCGGCACCTCAAATGCCACAGCCCAGCGAGGCGCCACGTGTGCCACT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189482.2
CDS GCA 72 bp CACACGTGGCGCCTCGCTGGGCTGTGGCATTTGAGGTaGCGAGTCAGCATGCGTTGCAGCGGGAAGGCCTTG +
Preference number: 6 (lower is better)
Translates to: HTWRLAGLWHLR*RVSMRCSGKAL
Trigger: CAAGGCCTTCCCGCTGCAACGCATGCTGACTCGGCACCTCAAATGCCACAGCCCAGCGAGGCGCCACGTGTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189482.2
CDS CCA 72 bp CAGCTTCTCCCTGCGCTCCCGGTAAGCGTAGCTGGCTaGCTGCCCGTGCACCTTGGCAAGGTGAGCTTCCAG +
Preference number: 6 (lower is better)
Translates to: QLLPALPVSVAG*LPVHLGKVSFQ
Trigger: CTGGAAGCTCACCTTGCCAAGGTGCACGGGCAGCCAGCCAGCTACGCTTACCGGGAGCGCAGGGAGAAGCTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189482.2
CDS CCA 72 bp CGTGCAGCTTCTCCCTGCGCTCCCGGTAAGCGTAGCTaGCTGGCTGCCCGTGCACCTTGGCAAGGTGAGCTT +
Preference number: 6 (lower is better)
Translates to: RAASPCAPGKRS*LAARAPWQGEL
Trigger: AAGCTCACCTTGCCAAGGTGCACGGGCAGCCAGCCAGCTACGCTTACCGGGAGCGCAGGGAGAAGCTGCACG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189482.2
CDS TCA 72 bp CCCGGGGCCCTTGGGAGCAGAGGTCAGTGTCCCCTGTaGGGACACTGCCCAGGTGTCTCTCAGACCAGAAGA +
Preference number: 6 (lower is better)
Translates to: PGALGSRGQCPL*GHCPGVSQTRR
Trigger: TCTTCTGGTCTGAGAGACACCTGGGCAGTGTCCTCACAGGGGACACTGACCTCTGCTCCCAAGGGCCCCGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189482.2
CDS CCA 72 bp GCCTTTACCACAATAGTGGCACACGTGGCGCCTCGCTaGGCTGTGGCATTTGAGGTGCCGAGTCAGCATGCG +
Preference number: 6 (lower is better)
Translates to: AFTTIVAHVAPR*AVAFEVPSQHA
Trigger: CGCATGCTGACTCGGCACCTCAAATGCCACAGCCCAGCGAGGCGCCACGTGTGCCACTATTGTGGTAAAGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189482.2
CDS GCA 72 bp GACCAGAAGATCTGTGTGCTGGTGGCACTGCCAGGCTaGTGCAGTCTGGGACATAAGCATCTCCCCGGAGCT +
Preference number: 6 (lower is better)
Translates to: DQKICVLVALPG*CSLGHKHLPGA
Trigger: AGCTCCGGGGAGATGCTTATGTCCCAGACTGCAGCAGCCTGGCAGTGCCACCAGCACACAGATCTTCTGGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189482.2
CDS CCA 72 bp GAGCTGGTCAGGAAGGTGGCTCCAGTTAGGTGGCTGTaGACGCCGACTCCTCACAAGAAAGACCCTGGGCAT +
Preference number: 6 (lower is better)
Translates to: ELVRKVAPVRWL*TPTPHKKDPGH
Trigger: ATGCCCAGGGTCTTTCTTGTGAGGAGTCGGCGTCCACAGCCACCTAACTGGAGCCACCTTCCTGACCAGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189482.2