RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OVOL2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037279

Ensembl transcript IDs: ENSMUST00000037423.4, ENSMUST00000103171.10

Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACCTCAGCCACCAAGAAACAATTCACAGGGCCTGTTGTGGCAGAATaGCTGACAACTTTGGGGTGCTTCTTACTGTTGCTGTCCCAAAAG +
Preference number: 1 (lower is better)
Translates to: TSATKKQFTGPVVAE*LTTLGCFLLLLSQK
Trigger: CTTTTGGGACAGCAACAGTAAGAAGCACCCCAAAGTTGTCAGTCATTCTGCCACAACAGGCCCTGTGAATTGTTTCTTGGTGGCTGAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
3UTR TCA 90 bp CAGCCACCAAGAAACAATTCACAGGGCCTGTTGTGGCAGAATGACTaGCAACTTTGGGGTGCTTCTTACTGTTGCTGTCCCAAAAGAAGA +
Preference number: 1 (lower is better)
Translates to: QPPRNNSQGLLWQND*QLWGASYCCCPKRR
Trigger: TCTTCTTTTGGGACAGCAACAGTAAGAAGCACCCCAAAGTTGTCAGTCATTCTGCCACAACAGGCCCTGTGAATTGTTTCTTGGTGGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
3UTR-3UTR GCA 90 bp GTATGTGACCTCAGCCACCAAGAAACAATTCACAGGGCCTGTTGTGGCAGAATGGGTGCTTCTTACTGTTaGTGTCCCAAAAGAAGAGAG +
Preference number: 2 (lower is better)
Translates to: VCDLSHQETIHRACCGRMGASYC*CPKRRE
Trigger: CTCTCTTCTTTTGGGACAGCAACAGTAAGAAGCACC...CATTCTGCCACAACAGGCCCTGTGAATTGTTTCTTGGTGGCTGAGGTCACATAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
3UTR-3UTR TCA 90 bp TGCATGGGAAGCATTTCAAGGCACCTTAAGATGACAGTCTCTTTAAGAACACCTCCTGTTGTGGCAGAATaGCTGACAACTTTGGGGTGC +
Preference number: 2 (lower is better)
Translates to: CMGSISRHLKMTVSLRTPPVVAE*LTTLGC
Trigger: GCACCCCAAAGTTGTCAGTCATTCTGCCACAACAGG...AGGTGTTCTTAAAGAGACTGTCATCTTAAGGTGCCTTGAAATGCTTCCCATGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
3UTR-3UTR TCA 90 bp TTTCAGAAGAATATACATTTTCCTTGCATGGGAAGCATTTCAAGGCACCTTAAGCCTGTTGTGGCAGAATaGCTGACAACTTTGGGGTGC +
Preference number: 2 (lower is better)
Translates to: FQKNIHFPCMGSISRHLKPVVAE*LTTLGC
Trigger: GCACCCCAAAGTTGTCAGTCATTCTGCCACAACAGG...CTTAAGGTGCCTTGAAATGCTTCCCATGCAAGGAAAATGTATATTCTTCTGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
3UTR-3UTR GCA 90 bp CCTTGCATGGGAAGCATTTCAAGGCACCTTAAGATGACAGTCTCTTTAAGAACAGGTGCTTCTTACTGTTaGTGTCCCAAAAGAAGAGAG +
Preference number: 2 (lower is better)
Translates to: PCMGSISRHLKMTVSLRTGASYC*CPKRRE
Trigger: CTCTCTTCTTTTGGGACAGCAACAGTAAGAAGCACC...TGTTCTTAAAGAGACTGTCATCTTAAGGTGCCTTGAAATGCTTCCCATGCAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
3UTR-3UTR CCA 90 bp TGCATGGGAAGCATTTCAAGGCACCTTAAGATGACAGTCTCTTTAAGAACACCTAAAAGAAGAGAGAGGTaGACTGAATATGAAAAGATC +
Preference number: 2 (lower is better)
Translates to: CMGSISRHLKMTVSLRTPKRRER*TEYEKI
Trigger: GATCTTTTCATATTCAGTCCACCTCTCTCTTCTTTT...AGGTGTTCTTAAAGAGACTGTCATCTTAAGGTGCCTTGAAATGCTTCCCATGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
3UTR-3UTR CCA 90 bp ATGGGAAGCATTTCAAGGCACCTTAAGATGACAGTCTCTTTAAGAACACCTCTCAAAAGAAGAGAGAGGTaGACTGAATATGAAAAGATC +
Preference number: 2 (lower is better)
Translates to: MGSISRHLKMTVSLRTPLKRRER*TEYEKI
Trigger: GATCTTTTCATATTCAGTCCACCTCTCTCTTCTTTT...GAGAGGTGTTCTTAAAGAGACTGTCATCTTAAGGTGCCTTGAAATGCTTCCCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
3UTR-3UTR CAA 90 bp CTCAGCCACCAAGAAACAATTCACAGGGCCTGTTGTGGCAGAATGACTGACAACGGGTGCTTCTTACTGTaGCTGTCCCAAAAGAAGAGA +
Preference number: 3 (lower is better)
Translates to: LSHQETIHRACCGRMTDNGCFLL*LSQKKR
Trigger: TCTCTTCTTTTGGGACAGCAACAGTAAGAAGCACCC...GTTGTCAGTCATTCTGCCACAACAGGCCCTGTGAATTGTTTCTTGGTGGCTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
3UTR TCA 72 bp ACCAAGAAACAATTCACAGGGCCTGTTGTGGCAGAATaGCTGACAACTTTGGGGTGCTTCTTACTGTTGCTG +
Preference number: 3 (lower is better)
Translates to: TKKQFTGPVVAE*LTTLGCFLLLL
Trigger: CAGCAACAGTAAGAAGCACCCCAAAGTTGTCAGTCATTCTGCCACAACAGGCCCTGTGAATTGTTTCTTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
3UTR-3UTR CAA 90 bp ATGGGAAGCATTTCAAGGCACCTTAAGATGACAGTCTCTTTAAGAACACCTCTCGGGTGCTTCTTACTGTaGCTGTCCCAAAAGAAGAGA +
Preference number: 3 (lower is better)
Translates to: MGSISRHLKMTVSLRTPLGCFLL*LSQKKR
Trigger: TCTCTTCTTTTGGGACAGCAACAGTAAGAAGCACCC...GAGAGGTGTTCTTAAAGAGACTGTCATCTTAAGGTGCCTTGAAATGCTTCCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS-3UTR GCA 90 bp AAACCCGTATGTGACCTCAGCCACCAAGAAACAATTCACAGGGCCTGTTGTGGCCCCCGGCGCTGCTGCTaGAGCCGCTGCTACTGCCGC +
Preference number: 4 (lower is better)
Translates to: KPVCDLSHQETIHRACCGPRRCC*SRCYCR
Trigger: GCGGCAGTAGCAGCGGCTGCAGCAGCAGCGCCGGGG...GCCACAACAGGCCCTGTGAATTGTTTCTTGGTGGCTGAGGTCACATACGGGTTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS-3UTR GCA 90 bp CTCAGCCACCAAGAAACAATTCACAGGGCCTGTTGTGGCAGAATGACTGACAACCCCCGGCGCTGCTGCTaGAGCCGCTGCTACTGCCGC +
Preference number: 4 (lower is better)
Translates to: LSHQETIHRACCGRMTDNPRRCC*SRCYCR
Trigger: GCGGCAGTAGCAGCGGCTGCAGCAGCAGCGCCGGGG...GTTGTCAGTCATTCTGCCACAACAGGCCCTGTGAATTGTTTCTTGGTGGCTGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS-3UTR CCA 90 bp ACACACAGAAACCCGTATGTGACCTCAGCCACCAAGAAACAATTCACAGGGCCTACAGGTCCTCCTGGGTaGGGCCCGTGTAGCCGCAAT +
Preference number: 4 (lower is better)
Translates to: THRNPYVTSATKKQFTGPTGPPG*GPCSRN
Trigger: ATTGCGGCTACACGGGCCCCACCCAGGAGGACCTGT...AGGCCCTGTGAATTGTTTCTTGGTGGCTGAGGTCACATACGGGTTTCTGTGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS-3UTR CCA 90 bp TGTTGTGGCAGAATGACTGACAACTTTGGGGTGCTTCTTACTGTTGCTGTCCCAACAGGTCCTCCTGGGTaGGGCCCGTGTAGCCGCAAT +
Preference number: 4 (lower is better)
Translates to: CCGRMTDNFGVLLTVAVPTGPPG*GPCSRN
Trigger: ATTGCGGCTACACGGGCCCCACCCAGGAGGACCTGT...TGGGACAGCAACAGTAAGAAGCACCCCAAAGTTGTCAGTCATTCTGCCACAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS-3UTR TCA 90 bp AAACCCGTATGTGACCTCAGCCACCAAGAAACAATTCACAGGGCCTGTTGTGGCAGGAACACCGCTGGGTaGAGGCCTTGTTACACACCT +
Preference number: 4 (lower is better)
Translates to: KPVCDLSHQETIHRACCGRNTAG*RPCYTP
Trigger: AGGTGTGTAACAAGGCCTTCACCCAGCGGTGTTCCT...GCCACAACAGGCCCTGTGAATTGTTTCTTGGTGGCTGAGGTCACATACGGGTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS-3UTR TCA 90 bp ACACACAGAAACCCGTATGTGACCTCAGCCACCAAGAAACAATTCACAGGGCCTAGGAACACCGCTGGGTaGAGGCCTTGTTACACACCT +
Preference number: 4 (lower is better)
Translates to: THRNPYVTSATKKQFTGPRNTAG*RPCYTP
Trigger: AGGTGTGTAACAAGGCCTTCACCCAGCGGTGTTCCT...AGGCCCTGTGAATTGTTTCTTGGTGGCTGAGGTCACATACGGGTTTCTGTGTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS-3UTR GCA 90 bp CCTTGCATGGGAAGCATTTCAAGGCACCTTAAGATGACAGTCTCTTTAAGAACAGGAGCTCATCCCAGCTaGGGACAGAGACTCCCGGGC +
Preference number: 4 (lower is better)
Translates to: PCMGSISRHLKMTVSLRTGAHPS*GQRLPG
Trigger: GCCCGGGAGTCTCTGTCCGCAGCTGGGATGAGCTCC...TGTTCTTAAAGAGACTGTCATCTTAAGGTGCCTTGAAATGCTTCCCATGCAAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037423.4
CDS-3UTR GCA 90 bp CTCAGCCACCAAGAAACAATTCACAGGGCCTGTTGTGGCAGAATGACTGACAACCCTTGCCGCAGAAGGTaGACAGGTGCCTCTTTACCT +
Preference number: 4 (lower is better)
Translates to: LSHQETIHRACCGRMTDNPCRRR*TGASLP
Trigger: AGGTAAAGAGGCACCTGTGCACCTTCTGCGGCAAGG...GTTGTCAGTCATTCTGCCACAACAGGCCCTGTGAATTGTTTCTTGGTGGCTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS-3UTR GCA 90 bp CAGAAACCCGTATGTGACCTCAGCCACCAAGAAACAATTCACAGGGCCTGTTGTCCTTGCCGCAGAAGGTaGACAGGTGCCTCTTTACCT +
Preference number: 4 (lower is better)
Translates to: QKPVCDLSHQETIHRACCPCRRR*TGASLP
Trigger: AGGTAAAGAGGCACCTGTGCACCTTCTGCGGCAAGG...ACAACAGGCCCTGTGAATTGTTTCTTGGTGGCTGAGGTCACATACGGGTTTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS-3UTR CCA 90 bp CTCAGCCACCAAGAAACAATTCACAGGGCCTGTTGTGGCAGAATGACTGACAACACAGCCCAGGCTCACTaGGATGTAAGTGTCTGCCCT +
Preference number: 4 (lower is better)
Translates to: LSHQETIHRACCGRMTDNTAQAH*DVSVCP
Trigger: AGGGCAGACACTTACATCCCAGTGAGCCTGGGCTGT...GTTGTCAGTCATTCTGCCACAACAGGCCCTGTGAATTGTTTCTTGGTGGCTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037423.4
CDS-3UTR CCA 90 bp TGTTGTGGCAGAATGACTGACAACTTTGGGGTGCTTCTTACTGTTGCTGTCCCACCTCTTCACTCAGGGTaGAATTCTCCTGCAGCGGGG +
Preference number: 4 (lower is better)
Translates to: CCGRMTDNFGVLLTVAVPPLHSG*NSPAAG
Trigger: CCCCGCTGCAGGAGAATTCCACCCTGAGTGAAGAGG...TGGGACAGCAACAGTAAGAAGCACCCCAAAGTTGTCAGTCATTCTGCCACAACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS-3UTR GCA 90 bp CAGAAACCCGTATGTGACCTCAGCCACCAAGAAACAATTCACAGGGCCTGTTGTCAGAAGGTGCACAGGTaGCTCTTTACCTGGTTGTGG +
Preference number: 4 (lower is better)
Translates to: QKPVCDLSHQETIHRACCQKVHR*LFTWLW
Trigger: CCACAACCAGGTAAAGAGGCACCTGTGCACCTTCTG...ACAACAGGCCCTGTGAATTGTTTCTTGGTGGCTGAGGTCACATACGGGTTTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS-3UTR GCA 90 bp CAGAAACCCGTATGTGACCTCAGCCACCAAGAAACAATTCACAGGGCCTGTTGTTGGGATGTAAGTGTCTaGCCTTTTGTCATCCGGGAG +
Preference number: 4 (lower is better)
Translates to: QKPVCDLSHQETIHRACCWDVSV*PFVIRE
Trigger: CTCCCGGATGACAAAAGGGCAGACACTTACATCCCA...ACAACAGGCCCTGTGAATTGTTTCTTGGTGGCTGAGGTCACATACGGGTTTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037423.4
CDS-3UTR GCA 90 bp ACACACAGAAACCCGTATGTGACCTCAGCCACCAAGAAACAATTCACAGGGCCTTGGTCACTGTTCACATaGAGATACAGGTCCTCCTGG +
Preference number: 4 (lower is better)
Translates to: THRNPYVTSATKKQFTGPWSLFT*RYRSSW
Trigger: CCAGGAGGACCTGTATCTGCATGTGAACAGTGACCA...AGGCCCTGTGAATTGTTTCTTGGTGGCTGAGGTCACATACGGGTTTCTGTGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS-3UTR CCA 90 bp ACACACAGAAACCCGTATGTGACCTCAGCCACCAAGAAACAATTCACAGGGCCTAATGTGCTCCCTGGATaGTCACTGTTCACATGCAGA +
Preference number: 4 (lower is better)
Translates to: THRNPYVTSATKKQFTGPNVLPG*SLFTCR
Trigger: TCTGCATGTGAACAGTGACCATCCAGGGAGCACATT...AGGCCCTGTGAATTGTTTCTTGGTGGCTGAGGTCACATACGGGTTTCTGTGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS-3UTR CCA 90 bp CAGAAACCCGTATGTGACCTCAGCCACCAAGAAACAATTCACAGGGCCTGTTGTGAGAAATGTGCTCCCTaGATGGTCACTGTTCACATG +
Preference number: 4 (lower is better)
Translates to: QKPVCDLSHQETIHRACCEKCAP*MVTVHM
Trigger: CATGTGAACAGTGACCATCCAGGGAGCACATTTCTC...ACAACAGGCCCTGTGAATTGTTTCTTGGTGGCTGAGGTCACATACGGGTTTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS-3UTR CCA 90 bp ATGGGAAGCATTTCAAGGCACCTTAAGATGACAGTCTCTTTAAGAACACCTCTCCCTCTTCACTCAGGGTaGAATTCTCCTGCAGCGGGG +
Preference number: 4 (lower is better)
Translates to: MGSISRHLKMTVSLRTPLPLHSG*NSPAAG
Trigger: CCCCGCTGCAGGAGAATTCCACCCTGAGTGAAGAGG...GAGAGGTGTTCTTAAAGAGACTGTCATCTTAAGGTGCCTTGAAATGCTTCCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS-3UTR TCA 90 bp GTATGTGACCTCAGCCACCAAGAAACAATTCACAGGGCCTGTTGTGGCAGAATGCAAAGGTCACAGTTGTaGATCACAGAGTTGTCGCAT +
Preference number: 4 (lower is better)
Translates to: VCDLSHQETIHRACCGRMQRSQL*ITELSH
Trigger: ATGCGACAACTCTGTGATTCACAACTGTGACCTTTG...CATTCTGCCACAACAGGCCCTGTGAATTGTTTCTTGGTGGCTGAGGTCACATAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS-3UTR CCA 90 bp ACTGACAACTTTGGGGTGCTTCTTACTGTTGCTGTCCCAAAAGAAGAGAGAGGTTGGATCTTCTTTAGGTaGGACTCCAAGGAACACCGC +
Preference number: 4 (lower is better)
Translates to: TDNFGVLLTVAVPKEERGWIFFR*DSKEHR
Trigger: GCGGTGTTCCTTGGAGTCCCACCTAAAGAAGATCCA...ACCTCTCTCTTCTTTTGGGACAGCAACAGTAAGAAGCACCCCAAAGTTGTCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS-3UTR CCA 90 bp GACAGACACACATACACACAGAAACCCGTATGTGACCTCAGCCACCAAGAAACAAATGTGCTCCCTGGATaGTCACTGTTCACATGCAGA +
Preference number: 4 (lower is better)
Translates to: DRHTYTQKPVCDLSHQETNVLPG*SLFTCR
Trigger: TCTGCATGTGAACAGTGACCATCCAGGGAGCACATT...TGTTTCTTGGTGGCTGAGGTCACATACGGGTTTCTGTGTGTATGTGTGTCTGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS-3UTR CCA 90 bp TGTTGTGGCAGAATGACTGACAACTTTGGGGTGCTTCTTACTGTTGCTGTCCCAGAGAAATGTGCTCCCTaGATGGTCACTGTTCACATG +
Preference number: 4 (lower is better)
Translates to: CCGRMTDNFGVLLTVAVPEKCAP*MVTVHM
Trigger: CATGTGAACAGTGACCATCCAGGGAGCACATTTCTC...TGGGACAGCAACAGTAAGAAGCACCCCAAAGTTGTCAGTCATTCTGCCACAACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS-3UTR TCA 90 bp CTGACAACTTTGGGGTGCTTCTTACTGTTGCTGTCCCAAAAGAAGAGAGAGGTGCAAAGGTCACAGTTGTaGATCACAGAGTTGTCGCAT +
Preference number: 4 (lower is better)
Translates to: LTTLGCFLLLLSQKKREVQRSQL*ITELSH
Trigger: ATGCGACAACTCTGTGATTCACAACTGTGACCTTTG...CACCTCTCTCTTCTTTTGGGACAGCAACAGTAAGAAGCACCCCAAAGTTGTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS-3UTR TCA 90 bp CTGACAACTTTGGGGTGCTTCTTACTGTTGCTGTCCCAAAAGAAGAGAGAGGTGTTTTGGAAGTCTTTTTaGGAAATGTGCTCCCTGGAT +
Preference number: 4 (lower is better)
Translates to: LTTLGCFLLLLSQKKREVFWKSF*EMCSLD
Trigger: ATCCAGGGAGCACATTTCTCAAAAAGACTTCCAAAA...CACCTCTCTCTTCTTTTGGGACAGCAACAGTAAGAAGCACCCCAAAGTTGTCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS-3UTR GCA 90 bp TTTCAGAAGAATATACATTTTCCTTGCATGGGAAGCATTTCAAGGCACCTTAAGTGGTCACTGTTCACATaGAGATACAGGTCCTCCTGG +
Preference number: 4 (lower is better)
Translates to: FQKNIHFPCMGSISRHLKWSLFT*RYRSSW
Trigger: CCAGGAGGACCTGTATCTGCATGTGAACAGTGACCA...CTTAAGGTGCCTTGAAATGCTTCCCATGCAAGGAAAATGTATATTCTTCTGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS-3UTR CCA 90 bp TTTCAGAAGAATATACATTTTCCTTGCATGGGAAGCATTTCAAGGCACCTTAAGTGGATCTTCTTTAGGTaGGACTCCAAGGAACACCGC +
Preference number: 4 (lower is better)
Translates to: FQKNIHFPCMGSISRHLKWIFFR*DSKEHR
Trigger: GCGGTGTTCCTTGGAGTCCCACCTAAAGAAGATCCA...CTTAAGGTGCCTTGAAATGCTTCCCATGCAAGGAAAATGTATATTCTTCTGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS GCA 90 bp CGGCCCCTCCGGGCTCCCCGGCGCTGCTGCTGCAGCCGCTGCTACTaGCGCCGTCGCTGCGGCAGTCTTCGGGCGGGTCGCGGAGCAGAC +
Preference number: 5 (lower is better)
Translates to: RPLRAPRRCCCSRCY*RRRCGSLRAGRGAD
Trigger: GTCTGCTCCGCGACCCGCCCGAAGACTGCCGCAGCGACGGCGGCAGTAGCAGCGGCTGCAGCAGCAGCGCCGGGGAGCCCGGAGGGGCCG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS GCA 90 bp TGCTTTCGGCCCCTCCGGGCTCCCCGGCGCTGCTGCTGCAGCCGCTaGTACTGCCGCCGTCGCTGCGGCAGTCTTCGGGCGGGTCGCGGA +
Preference number: 5 (lower is better)
Translates to: CFRPLRAPRRCCCSR*YCRRRCGSLRAGRG
Trigger: TCCGCGACCCGCCCGAAGACTGCCGCAGCGACGGCGGCAGTAGCAGCGGCTGCAGCAGCAGCGCCGGGGAGCCCGGAGGGGCCGAAAGCA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS GCA 90 bp TTGACCTGGCAACCGGGCGCTGCATCGCTGCCAGATGTCCATCGGTaGCTTGGGCGTCGTGAAGCTCTGGAGTTTCAGGCTCCGGCGCGC +
Preference number: 5 (lower is better)
Translates to: LTWQPGAASLPDVHR*LGRREALEFQAPAR
Trigger: GCGCGCCGGAGCCTGAAACTCCAGAGCTTCACGACGCCCAAGGCACCGATGGACATCTGGCAGCGATGCAGCGCCCGGTTGCCAGGTCAA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS CCA 90 bp GCGGCAGTCTTCGGGCGGGTCGCGGAGCAGACAGCCCAGGCTCACTaGGATGTAAGTGTCTGCCCTTTTGTCATCCGGGAGCTCATCCCA +
Preference number: 5 (lower is better)
Translates to: AAVFGRVAEQTAQAH*DVSVCPFVIRELIP
Trigger: TGGGATGAGCTCCCGGATGACAAAAGGGCAGACACTTACATCCCAGTGAGCCTGGGCTGTCTGCTCCGCGACCCGCCCGAAGACTGCCGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037423.4
CDS GCA 90 bp CGGGTCGCGGAGCAGACAGCCCAGGCTCACTGGGATGTAAGTGTCTaGCCTTTTGTCATCCGGGAGCTCATCCCAGCTGCGGACAGAGAC +
Preference number: 5 (lower is better)
Translates to: RVAEQTAQAHWDVSV*PFVIRELIPAADRD
Trigger: GTCTCTGTCCGCAGCTGGGATGAGCTCCCGGATGACAAAAGGGCAGACACTTACATCCCAGTGAGCCTGGGCTGTCTGCTCCGCGACCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037423.4
CDS GCA 90 bp GGATGTAAGTGTCTGCCCTTTTGTCATCCGGGAGCTCATCCCAGCTaGGGACAGAGACTCCCGGGCTCCTCCTCTTCACCAAAAAGACTT +
Preference number: 5 (lower is better)
Translates to: GCKCLPFCHPGAHPS*GQRLPGSSSSPKRL
Trigger: AAGTCTTTTTGGTGAAGAGGAGGAGCCCGGGAGTCTCTGTCCGCAGCTGGGATGAGCTCCCGGATGACAAAAGGGCAGACACTTACATCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037423.4
CDS TCA 90 bp GTGAATCACAGAGTTGTCGCATGTGCCGGTGGTAAACTTGATTTTTaGCCTGGCAACCGGGCGCTGCATCGCTGCCAGATGTCCATCGGT +
Preference number: 5 (lower is better)
Translates to: VNHRVVACAGGKLDF*PGNRALHRCQMSIG
Trigger: ACCGATGGACATCTGGCAGCGATGCAGCGCCCGGTTGCCAGGTCAAAAATCAAGTTTACCACCGGCACATGCGACAACTCTGTGATTCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS GCA 72 bp ACGAGCTGCTTTCGGCCCCTCCGGGCTCCCCGGCGCTaGTGCTGCAGCCGCTGCTACTGCCGCCGTCGCTGC +
Preference number: 6 (lower is better)
Translates to: TSCFRPLRAPRR*CCSRCYCRRRC
Trigger: GCAGCGACGGCGGCAGTAGCAGCGGCTGCAGCAGCAGCGCCGGGGAGCCCGGAGGGGCCGAAAGCAGCTCGT
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS CAA 90 bp CCTGGCAACCGGGCGCTGCATCGCTGCCAGATGTCCATCGGTGCCTaGGGCGTCGTGAAGCTCTGGAGTTTCAGGCTCCGGCGCGCGCGG +
Preference number: 6 (lower is better)
Translates to: PGNRALHRCQMSIGA*GVVKLWSFRLRRAR
Trigger: CCGCGCGCGCCGGAGCCTGAAACTCCAGAGCTTCACGACGCCCAAGGCACCGATGGACATCTGGCAGCGATGCAGCGCCCGGTTGCCAGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS CAA 72 bp CGGGCGCTGCATCGCTGCCAGATGTCCATCGGTGCCTaGGGCGTCGTGAAGCTCTGGAGTTTCAGGCTCCGG +
Preference number: 6 (lower is better)
Translates to: RALHRCQMSIGA*GVVKLWSFRLR
Trigger: CCGGAGCCTGAAACTCCAGAGCTTCACGACGCCCAAGGCACCGATGGACATCTGGCAGCGATGCAGCGCCCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS GCA 72 bp CAACCGGGCGCTGCATCGCTGCCAGATGTCCATCGGTaGCTTGGGCGTCGTGAAGCTCTGGAGTTTCAGGCT +
Preference number: 6 (lower is better)
Translates to: QPGAASLPDVHR*LGRREALEFQA
Trigger: AGCCTGAAACTCCAGAGCTTCACGACGCCCAAGGCACCGATGGACATCTGGCAGCGATGCAGCGCCCGGTTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS CCA 72 bp TTCGGGCGGGTCGCGGAGCAGACAGCCCAGGCTCACTaGGATGTAAGTGTCTGCCCTTTTGTCATCCGGGAG +
Preference number: 6 (lower is better)
Translates to: FGRVAEQTAQAH*DVSVCPFVIRE
Trigger: CTCCCGGATGACAAAAGGGCAGACACTTACATCCCAGTGAGCCTGGGCTGTCTGCTCCGCGACCCGCCCGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037423.4
CDS GCA 72 bp GAGCAGACAGCCCAGGCTCACTGGGATGTAAGTGTCTaGCCTTTTGTCATCCGGGAGCTCATCCCAGCTGCG +
Preference number: 6 (lower is better)
Translates to: EQTAQAHWDVSV*PFVIRELIPAA
Trigger: CGCAGCTGGGATGAGCTCCCGGATGACAAAAGGGCAGACACTTACATCCCAGTGAGCCTGGGCTGTCTGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037423.4
CDS CCA 72 bp GGTCACTGTTCACATGCAGATACAGGTCCTCCTGGGTaGGGCCCGTGTAGCCGCAATCCTCACACACGTAGA +
Preference number: 6 (lower is better)
Translates to: GHCSHADTGPPG*GPCSRNPHTRR
Trigger: TCTACGTGTGTGAGGATTGCGGCTACACGGGCCCCACCCAGGAGGACCTGTATCTGCATGTGAACAGTGACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS TCA 72 bp AGAGTTGTCGCATGTGCCGGTGGTAAACTTGATTTTTaGCCTGGCAACCGGGCGCTGCATCGCTGCCAGATG +
Preference number: 6 (lower is better)
Translates to: RVVACAGGKLDF*PGNRALHRCQM
Trigger: CATCTGGCAGCGATGCAGCGCCCGGTTGCCAGGTCAAAAATCAAGTTTACCACCGGCACATGCGACAACTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS CAA 72 bp CTCAGGGTGGAATTCTCCTGCAGCGGGGACGTCAGCTaGTTCTGCATAAGGGCCGCCAACTTTTTGGAAGTC +
Preference number: 6 (lower is better)
Translates to: LRVEFSCSGDVS*FCIRAANFLEV
Trigger: GACTTCCAAAAAGTTGGCGGCCCTTATGCAGAACAAGCTGACGTCCCCGCTGCAGGAGAATTCCACCCTGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10
CDS CCA 72 bp TTTTTGGAAGTCTTTTTGAGAAATGTGCTCCCTGGATaGTCACTGTTCACATGCAGATACAGGTCCTCCTGG +
Preference number: 6 (lower is better)
Translates to: FLEVFLRNVLPG*SLFTCRYRSSW
Trigger: CCAGGAGGACCTGTATCTGCATGTGAACAGTGACCATCCAGGGAGCACATTTCTCAAAAAGACTTCCAAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000037423.4
ENSMUST00000103171.10