Pregenerated sensors for OVCA2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038268Ensembl transcript IDs: ENSMUST00000071562.3
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TATAGGGCTACCAAGTACAGGTCATCCTGTCCCCCAGCTTGGAGCTaGCACAGGGGGCTGCCTATGACTGCCAGTGGTCTGAGTACTAAC | + |
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Preference number: 1 (lower is better) Translates to: YRATKYRSSCPPAWS*HRGLPMTASGLSTN Trigger: GTTAGTACTCAGACCACTGGCAGTCATAGGCAGCCCCCTGTGTCAGCTCCAAGCTGGGGGACAGGATGACCTGTACTTGGTAGCCCTATA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR TCA 90 bp | GGACCTGGGACTAGAGCCTCTGGAACTAAGAGCTATAGATGTTTGTaGGCTACATTGTGGATGCTGGAGCCCGAACCTGGGTCCTTTGAA | + |
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Preference number: 1 (lower is better) Translates to: GPGTRASGTKSYRCL*ATLWMLEPEPGSFE Trigger: TTCAAAGGACCCAGGTTCGGGCTCCAGCATCCACAATGTAGCTCACAAACATCTATAGCTCTTAGTTCCAGAGGCTCTAGTCCCAGGTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR CCA 90 bp | ACCCAAGTCTTCAAGCTCAGAGTTCAGAGGGGGATGGAACAGTTATaGAAGAGAAAGCAATGGCCAAGCCAGGGACCAGGATGTAGGAAA | + |
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Preference number: 1 (lower is better) Translates to: TQVFKLRVQRGMEQL*KRKQWPSQGPGCRK Trigger: TTTCCTACATCCTGGTCCCTGGCTTGGCCATTGCTTTCTCTTCCATAACTGTTCCATCCCCCTCTGAACTCTGAGCTTGAAGACTTGGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR CCA 90 bp | CATATGGTACTACCCAAGTCTTCAAGCTCAGAGTTCAGAGGGGGATaGAACAGTTATGGAAGAGAAAGCAATGGCCAAGCCAGGGACCAG | + |
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Preference number: 1 (lower is better) Translates to: HMVLPKSSSSEFRGG*NSYGRESNGQARDQ Trigger: CTGGTCCCTGGCTTGGCCATTGCTTTCTCTTCCATAACTGTTCCATCCCCCTCTGAACTCTGAGCTTGAAGACTTGGGTAGTACCATATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR TCA 90 bp | GTCCTCTACCTCTGCCTGCATGTACCACCATGGCCATTGGGTCATTaGCTTTTTAAACACATATCATGTACAACCCTGGGACCTGGGACT | + |
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Preference number: 1 (lower is better) Translates to: VLYLCLHVPPWPLGH*LFKHISCTTLGPGT Trigger: AGTCCCAGGTCCCAGGGTTGTACATGATATGTGTTTAAAAAGTCAATGACCCAATGGCCATGGTGGTACATGCAGGCAGAGGTAGAGGAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR TCA 90 bp | AAACTTCCACAAAAGGATGGTGACATGGCTCAGCAGGTAGAGGCATaGCTTGCCAAGTCAAATGATCAGAGCTCAGAAAGAACCCACATG | + |
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Preference number: 1 (lower is better) Translates to: KLPQKDGDMAQQVEA*LAKSNDQSSERTHM Trigger: CATGTGGGTTCTTTCTGAGCTCTGATCATTTGACTTGGCAAGTCATGCCTCTACCTGCTGAGCCATGTCACCATCCTTTTGTGGAAGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR CCA 90 bp | ACTAGACTGTCCTCTACCTCTGCCTGCATGTACCACCATGGCCATTaGGTCATTGACTTTTTAAACACATATCATGTACAACCCTGGGAC | + |
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Preference number: 1 (lower is better) Translates to: TRLSSTSACMYHHGH*VIDFLNTYHVQPWD Trigger: GTCCCAGGGTTGTACATGATATGTGTTTAAAAAGTCAATGACCCAATGGCCATGGTGGTACATGCAGGCAGAGGTAGAGGACAGTCTAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR GCA 90 bp | AGAAACCCTGAAGATGGCTTCATTAGGAAAAGGCAGGTTACTCTGTaGTGTCTTTGGCCTCTACCCAACATATGGTACTACCCAAGTCTT | + |
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Preference number: 1 (lower is better) Translates to: RNPEDGFIRKRQVTL*CLWPLPNIWYYPSL Trigger: AAGACTTGGGTAGTACCATATGTTGGGTAGAGGCCAAAGACAGCACAGAGTAACCTGCCTTTTCCTAATGAAGCCATCTTCAGGGTTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR-3UTR TCA 90 bp | GGGTATAAGAATGACTTGGGAGTAACTGGCCAACTCCAACTCCTGCTCAGTGACTCCACAAAAGGATGGTaGCATGGCTCAGCAGGTAGA | + |
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Preference number: 2 (lower is better) Translates to: GYKNDLGVTGQLQLLLSDSTKGW*HGSAGR Trigger: TCTACCTGCTGAGCCATGTCACCATCCTTTTGTGGA...GTCACTGAGCAGGAGTTGGAGTTGGCCAGTTACTCCCAAGTCATTCTTATACCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR-3UTR CCA 90 bp | CTTCAAGCTCAGAGTTCAGAGGGGGATGGAACAGTTATGGAAGAGAAAGCAATGATGTGTCCTTGGGTTTaGTTTGGTGCTGCCCCAGGA | + |
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Preference number: 2 (lower is better) Translates to: LQAQSSEGDGTVMEEKAMMCPWV*FGAAPG Trigger: TCCTGGGGCAGCACCAAACCAAACCCAAGGACACAT...CATTGCTTTCTCTTCCATAACTGTTCCATCCCCCTCTGAACTCTGAGCTTGAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR-3UTR CCA 90 bp | GGGTATAAGAATGACTTGGGAGTAACTGGCCAACTCCAACTCCTGCTCAGTGACAAACCTAAAAGCAGATaGAGCCAAGCAGAGCCTTGC | + |
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Preference number: 2 (lower is better) Translates to: GYKNDLGVTGQLQLLLSDKPKSR*SQAEPC Trigger: GCAAGGCTCTGCTTGGCTCCATCTGCTTTTAGGTTT...GTCACTGAGCAGGAGTTGGAGTTGGCCAGTTACTCCCAAGTCATTCTTATACCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR-3UTR TCA 90 bp | TCTGTGCTGTCTTTGGCCTCTACCCAACATATGGTACTACCCAAGTCTTCAAGCCAGCAGGTAGAGGCATaGCTTGCCAAGTCAAATGAT | + |
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Preference number: 2 (lower is better) Translates to: SVLSLASTQHMVLPKSSSQQVEA*LAKSND Trigger: ATCATTTGACTTGGCAAGTCATGCCTCTACCTGCTG...GCTTGAAGACTTGGGTAGTACCATATGTTGGGTAGAGGCCAAAGACAGCACAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR-3UTR CCA 90 bp | GAAACCCTGAAGATGGCTTCATTAGGAAAAGGCAGGTTACTCTGTGCTGTCTTTTGGAAGAGAAAGCAATaGCCAAGCCAGGGACCAGGA | + |
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Preference number: 2 (lower is better) Translates to: ETLKMASLGKGRLLCAVFWKRKQ*PSQGPG Trigger: TCCTGGTCCCTGGCTTGGCCATTGCTTTCTCTTCCA...AAAGACAGCACAGAGTAACCTGCCTTTTCCTAATGAAGCCATCTTCAGGGTTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR-3UTR GCA 90 bp | TCTGCCTGCATGTACCACCATGGCCATTGGGTCATTGACTTTTTAAACACATATAGCCAAGCAGAGCCTTaGCAAGTGTTTTCTTTCCCC | + |
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Preference number: 2 (lower is better) Translates to: SACMYHHGHWVIDFLNTYSQAEP*QVFSFP Trigger: GGGGAAAGAAAACACTTGGCAAGGCTCTGCTTGGCT...ATATGTGTTTAAAAAGTCAATGACCCAATGGCCATGGTGGTACATGCAGGCAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR-3UTR TCA 90 bp | AGGGATCTCAAATCAGTACATGGGACTTTGGGGTATAATTCCAGTCTATCCTTTTTTTGGTGGAAATCTTaGGCCCTAAAGAAGCCAGAG | + |
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Preference number: 2 (lower is better) Translates to: RDLKSVHGTLGYNSSLSFFWWKS*ALKKPE Trigger: CTCTGGCTTCTTTAGGGCTCAAGATTTCCACCAAAA...AAAGGATAGACTGGAATTATACCCCAAAGTCCCATGTACTGATTTGAGATCCCT 42% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR-3UTR CCA 90 bp | AGGGATCTCAAATCAGTACATGGGACTTTGGGGTATAATTCCAGTCTATCCTTTGGGATGGAACAGTTATaGAAGAGAAAGCAATGGCCA | + |
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Preference number: 2 (lower is better) Translates to: RDLKSVHGTLGYNSSLSFGMEQL*KRKQWP Trigger: TGGCCATTGCTTTCTCTTCCATAACTGTTCCATCCC...AAAGGATAGACTGGAATTATACCCCAAAGTCCCATGTACTGATTTGAGATCCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR-3UTR CCA 90 bp | AGGGATCTCAAATCAGTACATGGGACTTTGGGGTATAATTCCAGTCTATCCTTTCTAGCTTCTTCAGTCTaGGACTTAAACTTCCACAAA | + |
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Preference number: 2 (lower is better) Translates to: RDLKSVHGTLGYNSSLSFLASSV*DLNFHK Trigger: TTTGTGGAAGTTTAAGTCCCAGACTGAAGAAGCTAG...AAAGGATAGACTGGAATTATACCCCAAAGTCCCATGTACTGATTTGAGATCCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR TCA 72 bp | ACCAAGTACAGGTCATCCTGTCCCCCAGCTTGGAGCTaGCACAGGGGGCTGCCTATGACTGCCAGTGGTCTG | + |
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Preference number: 3 (lower is better) Translates to: TKYRSSCPPAWS*HRGLPMTASGL Trigger: CAGACCACTGGCAGTCATAGGCAGCCCCCTGTGTCAGCTCCAAGCTGGGGGACAGGATGACCTGTACTTGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR GCA 72 bp | GATAAGCTCAGTCTCAGATCTGCCTGTCTCTGCCAGTaGTGGGATGAAAGGCACGTGCCACCACTAACTGGT | + |
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Preference number: 3 (lower is better) Translates to: DKLSLRSACLCQ*WDERHVPPLTG Trigger: ACCAGTTAGTGGTGGCACGTGCCTTTCATCCCAGCACTGGCAGAGACAGGCAGATCTGAGACTGAGCTTATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR-3UTR CAA 90 bp | CTTCAAGCTCAGAGTTCAGAGGGGGATGGAACAGTTATGGAAGAGAAAGCAATGGTCCTTGGGTTTGGTTaGGTGCTGCCCCAGGATCGG | + |
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Preference number: 3 (lower is better) Translates to: LQAQSSEGDGTVMEEKAMVLGFG*VLPQDR Trigger: CCGATCCTGGGGCAGCACCAAACCAAACCCAAGGAC...CATTGCTTTCTCTTCCATAACTGTTCCATCCCCCTCTGAACTCTGAGCTTGAAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR TCA 72 bp | CTTGGGAGTAACTGGCCAACTCCAACTCCTGCTCAGTaGCTAAGCTCCCTAGAAGATATTGTGGTGTGGGAC | + |
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Preference number: 3 (lower is better) Translates to: LGSNWPTPTPAQ*LSSLEDIVVWD Trigger: GTCCCACACCACAATATCTTCTAGGGAGCTTAGTCACTGAGCAGGAGTTGGAGTTGGCCAGTTACTCCCAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR TCA 72 bp | CAGTCTCAGATCTGCCTGTCTCTGCCAGTGCTGGGATaGAAGGCACGTGCCACCACTAACTGGTTGTTTTTA | + |
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Preference number: 3 (lower is better) Translates to: QSQICLSLPVLG*KARATTNWLFL Trigger: TAAAAACAACCAGTTAGTGGTGGCACGTGCCTTTCATCCCAGCACTGGCAGAGACAGGCAGATCTGAGACTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR TCA 72 bp | ACTAGAGCCTCTGGAACTAAGAGCTATAGATGTTTGTaGGCTACATTGTGGATGCTGGAGCCCGAACCTGGG | + |
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Preference number: 3 (lower is better) Translates to: TRASGTKSYRCL*ATLWMLEPEPG Trigger: CCCAGGTTCGGGCTCCAGCATCCACAATGTAGCTCACAAACATCTATAGCTCTTAGTTCCAGAGGCTCTAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR CCA 72 bp | AGCCAGGGACCAGGATGTAGGAAACCTAAAAGCAGATaGAGCCAAGCAGAGCCTTGCCAAGTGTTTTCTTTC | + |
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Preference number: 3 (lower is better) Translates to: SQGPGCRKPKSR*SQAEPCQVFSF Trigger: GAAAGAAAACACTTGGCAAGGCTCTGCTTGGCTCCATCTGCTTTTAGGTTTCCTACATCCTGGTCCCTGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR CCA 72 bp | CAGAGGGGGATGGAACAGTTATGGAAGAGAAAGCAATaGCCAAGCCAGGGACCAGGATGTAGGAAACCTAAA | + |
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Preference number: 3 (lower is better) Translates to: QRGMEQLWKRKQ*PSQGPGCRKPK Trigger: TTTAGGTTTCCTACATCCTGGTCCCTGGCTTGGCCATTGCTTTCTCTTCCATAACTGTTCCATCCCCCTCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR-3UTR CAA 90 bp | CAGATGGAGCCAAGCAGAGCCTTGCCAAGTGTTTTCTTTCCCCAAACTCCTCAAACCAAAAATGTGTCCTaGGGTTTGGTTTGGTGCTGC | + |
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Preference number: 3 (lower is better) Translates to: QMEPSRALPSVFFPQTPQTKNVS*GLVWCC Trigger: GCAGCACCAAACCAAACCCAAGGACACATTTTTGGT...TTGAGGAGTTTGGGGAAAGAAAACACTTGGCAAGGCTCTGCTTGGCTCCATCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR TCA 72 bp | TGTCTTCTCACAGGCTCTCTGGGCTTATGTGTGTCCTaGGAACTGACAGTTGTCTTAACTAGCCATGGTGAG | + |
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Preference number: 3 (lower is better) Translates to: CLLTGSLGLCVS*ELTVVLTSHGE Trigger: CTCACCATGGCTAGTTAAGACAACTGTCAGTTCTCAGGACACACATAAGCCCAGAGAGCCTGTGAGAAGACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR TCA 72 bp | CTGCTGAGCCATCTCACTGTCTTTTGGTGGAAATCTTaGGCCCTAAAGAAGCCAGAGGCCTTTGTAACTGAG | + |
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Preference number: 3 (lower is better) Translates to: LLSHLTVFWWKS*ALKKPEAFVTE Trigger: CTCAGTTACAAAGGCCTCTGGCTTCTTTAGGGCTCAAGATTTCCACCAAAAGACAGTGAGATGGCTCAGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR-3UTR CAA 90 bp | GCTGAGCCATCTCACTGTCTTTTGGTGGAAATCTTGAGCCCTAAAGAAGCCAGAGGGTATAAGAATGACTaGGGAGTAACTGGCCAACTC | + |
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Preference number: 3 (lower is better) Translates to: AEPSHCLLVEILSPKEARGYKND*GVTGQL Trigger: GAGTTGGCCAGTTACTCCCAAGTCATTCTTATACCC...TCTGGCTTCTTTAGGGCTCAAGATTTCCACCAAAAGACAGTGAGATGGCTCAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR TCA 72 bp | CAAAAGGATGGTGACATGGCTCAGCAGGTAGAGGCATaGCTTGCCAAGTCAAATGATCAGAGCTCAGAAAGA | + |
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Preference number: 3 (lower is better) Translates to: QKDGDMAQQVEA*LAKSNDQSSER Trigger: TCTTTCTGAGCTCTGATCATTTGACTTGGCAAGTCATGCCTCTACCTGCTGAGCCATGTCACCATCCTTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR GCA 72 bp | CTAAGAGCTATAGATGTTTGTGAGCTACATTGTGGATaGTGGAGCCCGAACCTGGGTCCTTTGAAAAAGCAG | + |
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Preference number: 3 (lower is better) Translates to: LRAIDVCELHCG*WSPNLGPLKKQ Trigger: CTGCTTTTTCAAAGGACCCAGGTTCGGGCTCCAGCATCCACAATGTAGCTCACAAACATCTATAGCTCTTAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR TCA 72 bp | CTCTGCCTGCATGTACCACCATGGCCATTGGGTCATTaGCTTTTTAAACACATATCATGTACAACCCTGGGA | + |
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Preference number: 3 (lower is better) Translates to: LCLHVPPWPLGH*LFKHISCTTLG Trigger: TCCCAGGGTTGTACATGATATGTGTTTAAAAAGTCAATGACCCAATGGCCATGGTGGTACATGCAGGCAGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR-3UTR CAA 90 bp | AGCAGTAATCTCAGAAACCCTGAAGATGGCTTCATTAGGAAAAGGCAGGTTACTAAAGAACCCACATGGTaGAATCAACTCCCCGCACTT | + |
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Preference number: 3 (lower is better) Translates to: SSNLRNPEDGFIRKRQVTKEPTW*NQLPAL Trigger: AAGTGCGGGGAGTTGATTCAACCATGTGGGTTCTTT...AGTAACCTGCCTTTTCCTAATGAAGCCATCTTCAGGGTTTCTGAGATTACTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR-3UTR CAA 90 bp | AGGGATCTCAAATCAGTACATGGGACTTTGGGGTATAATTCCAGTCTATCCTTTATGTGTGTGGCAAGATaGGGCACTGGAAGTGAGAAG | + |
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Preference number: 3 (lower is better) Translates to: RDLKSVHGTLGYNSSLSFMCVAR*GTGSEK Trigger: CTTCTCACTTCCAGTGCCCAATCTTGCCACACACAT...AAAGGATAGACTGGAATTATACCCCAAAGTCCCATGTACTGATTTGAGATCCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR CCA 72 bp | TCCTCTACCTCTGCCTGCATGTACCACCATGGCCATTaGGTCATTGACTTTTTAAACACATATCATGTACAA | + |
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Preference number: 3 (lower is better) Translates to: SSTSACMYHHGH*VIDFLNTYHVQ Trigger: TTGTACATGATATGTGTTTAAAAAGTCAATGACCCAATGGCCATGGTGGTACATGCAGGCAGAGGTAGAGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS-3UTR TCA 90 bp | GCAGCGTGCCTATGTGTGTGGCAAGATTGGGCACTGGAAGTGAGAAGAAAAATGGCCTCGGGGACCGGGTaGGGTCCGCTGAGGCACACA | + |
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Preference number: 4 (lower is better) Translates to: AACLCVWQDWALEVRRKMASGTG*GPLRHT Trigger: TGTGTGCCTCAGCGGACCTCACCCGGTCCCCGAGGC...CATTTTTCTTCTCACTTCCAGTGCCCAATCTTGCCACACACATAGGCACGCTGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS-3UTR GCA 90 bp | GGGTATAAGAATGACTTGGGAGTAACTGGCCAACTCCAACTCCTGCTCAGTGACGAAGCGAGGATCGCCTaGCTGGCCCAGGGCACACAC | + |
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Preference number: 4 (lower is better) Translates to: GYKNDLGVTGQLQLLLSDEARIA*LAQGTH Trigger: GTGTGTGCCCTGGGCCAGGCAGGCGATCCTCGCTTC...GTCACTGAGCAGGAGTTGGAGTTGGCCAGTTACTCCCAAGTCATTCTTATACCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS-3UTR TCA 90 bp | GGAAGAGAAAGCAATGGCCAAGCCAGGGACCAGGATGTAGGAAACCTAAAAGCAGCTGCTGGAATGAAGTaGCCACCGGAGTGGGTGAGG | + |
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Preference number: 4 (lower is better) Translates to: GRESNGQARDQDVGNLKAAAGMK*PPEWVR Trigger: CCTCACCCACTCCGGTGGTCACTTCATTCCAGCAGC...TGCTTTTAGGTTTCCTACATCCTGGTCCCTGGCTTGGCCATTGCTTTCTCTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS-3UTR GCA 90 bp | TATGGAAGAGAAAGCAATGGCCAAGCCAGGGACCAGGATGTAGGAAACCTAAAACACCAGCCTCGAGGCTaGTCCTCCGGAGAACAGGGC | + |
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Preference number: 4 (lower is better) Translates to: YGRESNGQARDQDVGNLKHQPRG*SSGEQG Trigger: GCCCTGTTCTCCGGAGGAGCAGCCTCGAGGCTGGTG...TTTTAGGTTTCCTACATCCTGGTCCCTGGCTTGGCCATTGCTTTCTCTTCCATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS-3UTR GCA 90 bp | GATGGAGCCAAGCAGAGCCTTGCCAAGTGTTTTCTTTCCCCAAACTCCTCAAACCCTCCTGCAGACCCCTaGACACTGTGGACTCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: DGAKQSLAKCFLSPNSSNPPADP*TLWTLP Trigger: TGGAAGAGTCCACAGTGTGCAGGGGTCTGCAGGAGG...GTTTGAGGAGTTTGGGGAAAGAAAACACTTGGCAAGGCTCTGCTTGGCTCCATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS-3UTR GCA 90 bp | GCTGAGCCATCTCACTGTCTTTTGGTGGAAATCTTGAGCCCTAAAGAAGCCAGAGTTTCCAGGGCCTCCTaGAGACCCCTGCACACTGTG | + |
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Preference number: 4 (lower is better) Translates to: AEPSHCLLVEILSPKEARVSRAS*RPLHTV Trigger: CACAGTGTGCAGGGGTCTGCAGGAGGCCCTGGAAAC...TCTGGCTTCTTTAGGGCTCAAGATTTCCACCAAAAGACAGTGAGATGGCTCAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS-3UTR CCA 90 bp | GCAGCGTGCCTATGTGTGTGGCAAGATTGGGCACTGGAAGTGAGAAGAAAAATGGCTAGTGCAGCCCCCTaGCTGAAGCCAAGAAGTCCA | + |
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Preference number: 4 (lower is better) Translates to: AACLCVWQDWALEVRRKMASAAP*LKPRSP Trigger: TGGACTTCTTGGCTTCAGCCAGGGGGCTGCACTAGC...CATTTTTCTTCTCACTTCCAGTGCCCAATCTTGCCACACACATAGGCACGCTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS-3UTR GCA 90 bp | GAAACCCTGAAGATGGCTTCATTAGGAAAAGGCAGGTTACTCTGTGCTGTCTTTGAGGCACACAAGCTCTaGCCGACCCCGCAGCGTCTT | + |
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Preference number: 4 (lower is better) Translates to: ETLKMASLGKGRLLCAVFEAHKL*PTPQRL Trigger: AAGACGCTGCGGGGTCGGGCAGAGCTTGTGTGCCTC...AAAGACAGCACAGAGTAACCTGCCTTTTCCTAATGAAGCCATCTTCAGGGTTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS-3UTR CCA 90 bp | GGGTATAAGAATGACTTGGGAGTAACTGGCCAACTCCAACTCCTGCTCAGTGACGACCCCTGCACACTGTaGACTCTTCCAGAGCAGAGA | + |
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Preference number: 4 (lower is better) Translates to: GYKNDLGVTGQLQLLLSDDPCTL*TLPEQR Trigger: TCTCTGCTCTGGAAGAGTCCACAGTGTGCAGGGGTC...GTCACTGAGCAGGAGTTGGAGTTGGCCAGTTACTCCCAAGTCATTCTTATACCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS-3UTR GCA 90 bp | AATAGCAGTAATCTCAGAAACCCTGAAGATGGCTTCATTAGGAAAAGGCAGGTTAAGCCCCGCTCGCTCTaGCGGAAGCCGGCTAGACAC | + |
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Preference number: 4 (lower is better) Translates to: NSSNLRNPEDGFIRKRQVKPRSL*RKPARH Trigger: GTGTCTAGCCGGCTTCCGGCAGAGCGAGCGGGGCTT...AACCTGCCTTTTCCTAATGAAGCCATCTTCAGGGTTTCTGAGATTACTGCTATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS-3UTR GCA 90 bp | GTCTTTCAGAGGCAGAAGTCAGAAAGCAGCGTGCCTATGTGTGTGGCAAGATTGACGCTGAGATGCAGCTaGTGGAATGAAGTGACCACC | + |
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Preference number: 4 (lower is better) Translates to: VFQRQKSESSVPMCVARLTLRCS*WNEVTT Trigger: GGTGGTCACTTCATTCCAGCAGCTGCATCTCAGCGT...CAATCTTGCCACACACATAGGCACGCTGCTTTCTGACTTCTGCCTCTGAAAGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR CAA 72 bp | CTACATTGTGGATGCTGGAGCCCGAACCTGGGTCCTTaGAAAAAGCAGCCCATGTCCTTAACCACAGAACCA | + |
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Preference number: 4 (lower is better) Translates to: LHCGCWSPNLGP*KKQPMSLTTEP Trigger: TGGTTCTGTGGTTAAGGACATGGGCTGCTTTTTCAAAGGACCCAGGTTCGGGCTCCAGCATCCACAATGTAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS-3UTR TCA 90 bp | GAAACCCTGAAGATGGCTTCATTAGGAAAAGGCAGGTTACTCTGTGCTGTCTTTATGCAGCTGCTGGAATaGAGTGACCACCGGAGTGGG | + |
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Preference number: 4 (lower is better) Translates to: ETLKMASLGKGRLLCAVFMQLLE*SDHRSG Trigger: CCCACTCCGGTGGTCACTTCATTCCAGCAGCTGCAT...AAAGACAGCACAGAGTAACCTGCCTTTTCCTAATGAAGCCATCTTCAGGGTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS-3UTR GCA 90 bp | CTTCAAGCTCAGAGTTCAGAGGGGGATGGAACAGTTATGGAAGAGAAAGCAATGGGCCTGACGCTGAGATaGAGCTGCTGGAATGAAGTG | + |
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Preference number: 4 (lower is better) Translates to: LQAQSSEGDGTVMEEKAMGLTLR*SCWNEV Trigger: CACTTCATTCCAGCAGCTGCATCTCAGCGTCAGGCC...CATTGCTTTCTCTTCCATAACTGTTCCATCCCCCTCTGAACTCTGAGCTTGAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS-3UTR CCA 90 bp | CTGCCCACCCCTGTCTTCTCACAGGCTCTCTGGGCTTATGTGTGTCCTGAGAACAAGTATAATAAATCTTaGCAAGGGGAAGCGAGGATC | + |
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Preference number: 4 (lower is better) Translates to: LPTPVFSQALWAYVCPENKYNKS*QGEARI Trigger: GATCCTCGCTTCCCCTTGCCAAGATTTATTATACTT...GTTCTCAGGACACACATAAGCCCAGAGAGCCTGTGAGAAGACAGGGGTGGGCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR CAA 72 bp | GTGTCAAGAACATATAACTCTGGGTATAAGAATGACTaGGGAGTAACTGGCCAACTCCAACTCCTGCTCAGT | + |
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Preference number: 4 (lower is better) Translates to: VSRTYNSGYKND*GVTGQLQLLLS Trigger: ACTGAGCAGGAGTTGGAGTTGGCCAGTTACTCCCAAGTCATTCTTATACCCAGAGTTATATGTTCTTGACAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS-3UTR TCA 90 bp | TCTGCCTGCATGTACCACCATGGCCATTGGGTCATTGACTTTTTAAACACATATAATTGCATACTCTCCTaGGAAGGGATGACTCGATCA | + |
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Preference number: 4 (lower is better) Translates to: SACMYHHGHWVIDFLNTYNCILS*EGMTRS Trigger: TGATCGAGTCATCCCTTCTCAGGAGAGTATGCAATT...ATATGTGTTTAAAAAGTCAATGACCCAATGGCCATGGTGGTACATGCAGGCAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| 3UTR CAA 72 bp | CTGTTAAAAAGGGATCTCAAATCAGTACATGGGACTTaGGGGTATAATTCCAGTCTATCCTTTCGTGAAATT | + |
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Preference number: 4 (lower is better) Translates to: LLKRDLKSVHGT*GYNSSLSFREI Trigger: AATTTCACGAAAGGATAGACTGGAATTATACCCCAAAGTCCCATGTACTGATTTGAGATCCCTTTTTAACAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS CCA 90 bp | CCACCAGCCTCGAGGCTGCTCCTCCGGAGAACAGGGCCCCGAGTCTaGACACGAACCCTCGGGAGCCGCTGCCTCGGGGACCGGGTGAGG | + |
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Preference number: 5 (lower is better) Translates to: PPASRLLLRRTGPRV*TRTLGSRCLGDRVR Trigger: CCTCACCCGGTCCCCGAGGCAGCGGCTCCCGAGGGTTCGTGTCCAGACTCGGGGCCCTGTTCTCCGGAGGAGCAGCCTCGAGGCTGGTGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS TCA 90 bp | ACGAACCCTCGGGAGCCGCTGCCTCGGGGACCGGGTGAGGTCCGCTaGGGCACACAAGCTCTGCCCGACCCCGCAGCGTCTTCCTCAGCG | + |
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Preference number: 5 (lower is better) Translates to: TNPREPLPRGPGEVR*GTQALPDPAASSSA Trigger: CGCTGAGGAAGACGCTGCGGGGTCGGGCAGAGCTTGTGTGCCTCAGCGGACCTCACCCGGTCCCCGAGGCAGCGGCTCCCGAGGGTTCGT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS TCA 90 bp | GAGTCTGGACACGAACCCTCGGGAGCCGCTGCCTCGGGGACCGGGTaGGGTCCGCTGAGGCACACAAGCTCTGCCCGACCCCGCAGCGTC | + |
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Preference number: 5 (lower is better) Translates to: ESGHEPSGAAASGTG*GPLRHTSSARPRSV Trigger: GACGCTGCGGGGTCGGGCAGAGCTTGTGTGCCTCAGCGGACCTCACCCGGTCCCCGAGGCAGCGGCTCCCGAGGGTTCGTGTCCAGACTC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS GCA 90 bp | CGCTGCCTCGGGGACCGGGTGAGGTCCGCTGAGGCACACAAGCTCTaGCCGACCCCGCAGCGTCTTCCTCAGCGCTCCGGTCTTCTCACG | + |
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Preference number: 5 (lower is better) Translates to: RCLGDRVRSAEAHKL*PTPQRLPQRSGLLT Trigger: CGTGAGAAGACCGGAGCGCTGAGGAAGACGCTGCGGGGTCGGGCAGAGCTTGTGTGCCTCAGCGGACCTCACCCGGTCCCCGAGGCAGCG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS GCA 90 bp | CGGAGAACAGGGCCCCGAGTCTGGACACGAACCCTCGGGAGCCGCTaGCTCGGGGACCGGGTGAGGTCCGCTGAGGCACACAAGCTCTGC | + |
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Preference number: 5 (lower is better) Translates to: RRTGPRVWTRTLGSR*LGDRVRSAEAHKLC Trigger: GCAGAGCTTGTGTGCCTCAGCGGACCTCACCCGGTCCCCGAGGCAGCGGCTCCCGAGGGTTCGTGTCCAGACTCGGGGCCCTGTTCTCCG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS GCA 90 bp | GTCTTCCTCAGCGCTCCGGTCTTCTCACGGAAGCCCCGCTCGCTCTaGCGGAAGCCGGCTAGACACAGCACTCGCAGGGTCTGCCGTGCC | + |
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Preference number: 5 (lower is better) Translates to: VFLSAPVFSRKPRSL*RKPARHSTRRVCRA Trigger: GGCACGGCAGACCCTGCGAGTGCTGTGTCTAGCCGGCTTCCGGCAGAGCGAGCGGGGCTTCCGTGAGAAGACCGGAGCGCTGAGGAAGAC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS-3UTR CAA 90 bp | CTGCCCACCCCTGTCTTCTCACAGGCTCTCTGGGCTTATGTGTGTCCTGAGAACGAATCGGCTAGCCAATaGCATACTCTCCTGAGAAGG | + |
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Preference number: 5 (lower is better) Translates to: LPTPVFSQALWAYVCPENESASQ*HTLLRR Trigger: CCTTCTCAGGAGAGTATGCAATTGGCTAGCCGATTC...GTTCTCAGGACACACATAAGCCCAGAGAGCCTGTGAGAAGACAGGGGTGGGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS TCA 72 bp | CGGGAGCCGCTGCCTCGGGGACCGGGTGAGGTCCGCTaGGGCACACAAGCTCTGCCCGACCCCGCAGCGTCT | + |
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Preference number: 6 (lower is better) Translates to: REPLPRGPGEVR*GTQALPDPAAS Trigger: AGACGCTGCGGGGTCGGGCAGAGCTTGTGTGCCTCAGCGGACCTCACCCGGTCCCCGAGGCAGCGGCTCCCG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS GCA 72 bp | GGGCCCCGAGTCTGGACACGAACCCTCGGGAGCCGCTaGCTCGGGGACCGGGTGAGGTCCGCTGAGGCACAC | + |
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Preference number: 6 (lower is better) Translates to: GPRVWTRTLGSR*LGDRVRSAEAH Trigger: GTGTGCCTCAGCGGACCTCACCCGGTCCCCGAGGCAGCGGCTCCCGAGGGTTCGTGTCCAGACTCGGGGCCC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS TCA 72 bp | CACGAACCCTCGGGAGCCGCTGCCTCGGGGACCGGGTaGGGTCCGCTGAGGCACACAAGCTCTGCCCGACCC | + |
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Preference number: 6 (lower is better) Translates to: HEPSGAAASGTG*GPLRHTSSARP Trigger: GGGTCGGGCAGAGCTTGTGTGCCTCAGCGGACCTCACCCGGTCCCCGAGGCAGCGGCTCCCGAGGGTTCGTG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS GCA 72 bp | GGGGACCGGGTGAGGTCCGCTGAGGCACACAAGCTCTaGCCGACCCCGCAGCGTCTTCCTCAGCGCTCCGGT | + |
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Preference number: 6 (lower is better) Translates to: GDRVRSAEAHKL*PTPQRLPQRSG Trigger: ACCGGAGCGCTGAGGAAGACGCTGCGGGGTCGGGCAGAGCTTGTGTGCCTCAGCGGACCTCACCCGGTCCCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS CCA 72 bp | TCGAGGCTGCTCCTCCGGAGAACAGGGCCCCGAGTCTaGACACGAACCCTCGGGAGCCGCTGCCTCGGGGAC | + |
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Preference number: 6 (lower is better) Translates to: SRLLLRRTGPRV*TRTLGSRCLGD Trigger: GTCCCCGAGGCAGCGGCTCCCGAGGGTTCGTGTCCAGACTCGGGGCCCTGTTCTCCGGAGGAGCAGCCTCGA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS GCA 72 bp | AGCGCTCCGGTCTTCTCACGGAAGCCCCGCTCGCTCTaGCGGAAGCCGGCTAGACACAGCACTCGCAGGGTC | + |
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Preference number: 6 (lower is better) Translates to: SAPVFSRKPRSL*RKPARHSTRRV Trigger: GACCCTGCGAGTGCTGTGTCTAGCCGGCTTCCGGCAGAGCGAGCGGGGCTTCCGTGAGAAGACCGGAGCGCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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| CDS GCA 72 bp | TCGGCTTCCTCCTCAGAAAACCACCAGCCTCGAGGCTaGTCCTCCGGAGAACAGGGCCCCGAGTCTGGACAC | + |
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Preference number: 6 (lower is better) Translates to: SASSSENHQPRG*SSGEQGPESGH Trigger: GTGTCCAGACTCGGGGCCCTGTTCTCCGGAGGAGCAGCCTCGAGGCTGGTGGTTTTCTGAGGAGGAAGCCGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071562.3 |
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