Pregenerated sensors for OTX1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000005917Ensembl transcript IDs: ENSMUST00000006071.14, ENSMUST00000147486.3
Found 90 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGAGCGAGAGCGTACTGCTATTCCGGGAAGAAACGGAGGGCCAAGTaGGAGCACCGGGCCCCACCTCCAAGGGGGAGAAGGGCTGCATCC | + |
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Preference number: 1 (lower is better) Translates to: RARAYCYSGKKRRAK*EHRAPPPRGRRAAS Trigger: GGATGCAGCCCTTCTCCCCCTTGGAGGTGGGGCCCGGTGCTCCCACTTGGCCCTCCGTTTCTTCCCGGAATAGCAGTACGCTCTCGCTCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| 3UTR GCA 90 bp | GAATCAGTCCAGCGCAGGGTAGGAAAGGAGGCTGGGGCACACTCCTaGCGCGAGCCTGGCCCAACGCTCACCACTGGTGAGACAGAAATG | + |
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Preference number: 1 (lower is better) Translates to: ESVQRRVGKEAGAHS*REPGPTLTTGETEM Trigger: CATTTCTGTCTCACCAGTGGTGAGCGTTGGGCCAGGCTCGCGGCAGGAGTGTGCCCCAGCCTCCTTTCCTACCCTGCGCTGGACTGATTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| 3UTR GCA 90 bp | GAAAGACTTGAAGGGGTGACGCACGAGCTGAGAGCGAGAGCGTACTaGTATTCCGGGAAGAAACGGAGGGCCAAGTGGGAGCACCGGGCC | + |
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Preference number: 1 (lower is better) Translates to: ERLEGVTHELRARAY*YSGKKRRAKWEHRA Trigger: GGCCCGGTGCTCCCACTTGGCCCTCCGTTTCTTCCCGGAATAGCAGTACGCTCTCGCTCTCAGCTCGTGCGTCACCCCTTCAAGTCTTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| 3UTR TCA 90 bp | GGAACGGACCTGACTATGTACAGCATTCCCGCTGAGGCGGAAGCTTaGATCAGTCCAGCGCAGGGTAGGAAAGGAGGCTGGGGCACACTC | + |
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Preference number: 1 (lower is better) Translates to: GTDLTMYSIPAEAEA*ISPAQGRKGGWGTL Trigger: GAGTGTGCCCCAGCCTCCTTTCCTACCCTGCGCTGGACTGATTCAAGCTTCCGCCTCAGCGGGAATGCTGTACATAGTCAGGTCCGTTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| 3UTR TCA 90 bp | CAACCAACAGCAACTAAAAACTTTAAGTGGTCCCTGGAACGGACCTaGCTATGTACAGCATTCCCGCTGAGGCGGAAGCTTGAATCAGTC | + |
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Preference number: 1 (lower is better) Translates to: QPTATKNFKWSLERT*LCTAFPLRRKLESV Trigger: GACTGATTCAAGCTTCCGCCTCAGCGGGAATGCTGTACATAGTCAGGTCCGTTCCAGGGACCACTTAAAGTTTTTAGTTGCTGTTGGTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| 3UTR TCA 90 bp | CTTCACATCGGACAAATCAAATTTACAAATTACTTTCCCACCTACTaGACCAAGCGGCCAAAACCAAAACCGATAGGTACACAGGTACTC | + |
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Preference number: 1 (lower is better) Translates to: LHIGQIKFTNYFPTY*TKRPKPKPIGTQVL Trigger: GAGTACCTGTGTACCTATCGGTTTTGGTTTTGGCCGCTTGGTTCAGTAGGTGGGAAAGTAATTTGTAAATTTGATTTGTCCGATGTGAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| 3UTR TCA 90 bp | AGAGGAAGAGGAGACGGACTGCCTTACATCTCAACAAGTAATTTGTaGTCTTCACATCGGACAAATCAAATTTACAAATTACTTTCCCAC | + |
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Preference number: 1 (lower is better) Translates to: RGRGDGLPYISTSNL*SSHRTNQIYKLLSH Trigger: GTGGGAAAGTAATTTGTAAATTTGATTTGTCCGATGTGAAGATCACAAATTACTTGTTGAGATGTAAGGCAGTCCGTCTCCTCTTCCTCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| 3UTR-3UTR CCA 90 bp | GGAGGGCCAAGTGGGAGCACCGGGCCCCACCTCCAAGGGGGAGAAGGGCTGCATCAAGTGGCACACAGATaGGAGCGGCAGTGCAGGCAA | + |
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Preference number: 2 (lower is better) Translates to: GGPSGSTGPHLQGGEGLHQVAHR*ERQCRQ Trigger: TTGCCTGCACTGCCGCTCCCATCTGTGTGCCACTTG...ATGCAGCCCTTCTCCCCCTTGGAGGTGGGGCCCGGTGCTCCCACTTGGCCCTCC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| 3UTR-3UTR GCA 90 bp | GGTGGGGAGCTAGATCAAGGGCAGCTGAAGGGGCGACAGTCTGCTAGGAGAAACGGCAAAGGCGGGTGGTaGAGCAGCAGCAACAGGATG | + |
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Preference number: 2 (lower is better) Translates to: GGELDQGQLKGRQSARRNGKGGW*SSSNRM Trigger: CATCCTGTTGCTGCTGCTGCACCACCCGCCTTTGCC...GTTTCTCCTAGCAGACTGTCGCCCCTTCAGCTGCCCTTGATCTAGCTCCCCACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| 3UTR-3UTR GCA 90 bp | GCTGTTTCCTTCACTTCCGATCCTCTAGCGCCCAGCTTCCTGGAACCAAGCGGGCTGGTGAGACAGAAATaGTGGAAGCTCGGGCCTGCG | + |
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Preference number: 2 (lower is better) Translates to: AVSFTSDPLAPSFLEPSGLVRQK*WKLGPA Trigger: CGCAGGCCCGAGCTTCCAGCATTTCTGTCTCACCAG...CCCGCTTGGTTCCAGGAAGCTGGGCGCTAGAGGATCGGAAGTGAAGGAAACAGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| 3UTR-3UTR GCA 90 bp | TGGAAGCTCGGGCCTGCGGGTGGGGAGCTAGATCAAGGGCAGCTGAAGGGGCGAGAGGGTATAGGTAGTTaGGTTTCTTCTCCACTTCCT | + |
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Preference number: 2 (lower is better) Translates to: WKLGPAGGELDQGQLKGREGIGS*VSSPLP Trigger: AGGAAGTGGAGAAGAAACGCAACTACCTATACCCTC...TCGCCCCTTCAGCTGCCCTTGATCTAGCTCCCCACCCGCAGGCCCGAGCTTCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| 3UTR-3UTR TCA 90 bp | GGTGGGGAGCTAGATCAAGGGCAGCTGAAGGGGCGACAGTCTGCTAGGAGAAACCGGCAGTGCAGGCAATaGATATCTTTTGGGGGACTG | + |
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Preference number: 2 (lower is better) Translates to: GGELDQGQLKGRQSARRNRQCRQ*ISFGGL Trigger: CAGTCCCCCAAAAGATATTCATTGCCTGCACTGCCG...GTTTCTCCTAGCAGACTGTCGCCCCTTCAGCTGCCCTTGATCTAGCTCCCCACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| 3UTR-3UTR TCA 90 bp | TGTTTCCTTCACTTCCGATCCTCTAGCGCCCAGCTTCCTGGAACCAAGCGGGTTCTGTCCAGAAAGACTTaGAGGGGTGACGCACGAGCT | + |
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Preference number: 2 (lower is better) Translates to: CFLHFRSSSAQLPGTKRVLSRKT*RGDARA Trigger: AGCTCGTGCGTCACCCCTTCAAGTCTTTCTGGACAG...AACCCGCTTGGTTCCAGGAAGCTGGGCGCTAGAGGATCGGAAGTGAAGGAAACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| 3UTR-3UTR CCA 90 bp | GGTGGGGAGCTAGATCAAGGGCAGCTGAAGGGGCGACAGTCTGCTAGGAGAAACAGGAGTGTGTATGTATaGACACACTCCAAACGGTTG | + |
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Preference number: 2 (lower is better) Translates to: GGELDQGQLKGRQSARRNRSVYV*THSKRL Trigger: CAACCGTTTGGAGTGTGTCCATACATACACACTCCT...GTTTCTCCTAGCAGACTGTCGCCCCTTCAGCTGCCCTTGATCTAGCTCCCCACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| 3UTR-3UTR CCA 90 bp | GACACACTCCAAACGGTTGATATACGCCAGTTAGTGACTTCAGTGTCCAGAAAGCAAGGCAAAGGCGGGTaGTGCAGCAGCAGCAACAGG | + |
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Preference number: 2 (lower is better) Translates to: DTLQTVDIRQLVTSVSRKQGKGG*CSSSNR Trigger: CCTGTTGCTGCTGCTGCACCACCCGCCTTTGCCTTG...CTTTCTGGACACTGAAGTCACTAACTGGCGTATATCAACCGTTTGGAGTGTGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| 3UTR-3UTR CCA 90 bp | GTACTCTCCGCAGATTTCGGAGAAGGAAGGTTCACTAAAAACTCACAGAACAGAGAGAGAGAGAAACATTaGACCTGGAACTCGGGCTTG | + |
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Preference number: 2 (lower is better) Translates to: VLSADFGEGRFTKNSQNREREKH*TWNSGL Trigger: CAAGCCCGAGTTCCAGGTCCAATGTTTCTCTCTCTC...TCTGTTCTGTGAGTTTTTAGTGAACCTTCCTTCTCCGAAATCTGCGGAGAGTAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| 3UTR CAA 90 bp | GAGAGAGAGAGAGAGAGAGAGAAACATTGGACCTGGAACTCGGGCTaGGTTTTCTTTCCACAATGCTGTAATTTCACCTTGTTTGTTTGT | + |
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Preference number: 2 (lower is better) Translates to: EREREREKHWTWNSG*VFFPQCCNFTLFVC Trigger: ACAAACAAACAAGGTGAAATTACAGCATTGTGGAAAGAAAACCAAGCCCGAGTTCCAGGTCCAATGTTTCTCTCTCTCTCTCTCTCTCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| 3UTR GCA 72 bp | CAGCGCAGGGTAGGAAAGGAGGCTGGGGCACACTCCTaGCGCGAGCCTGGCCCAACGCTCACCACTGGTGAG | + |
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Preference number: 3 (lower is better) Translates to: QRRVGKEAGAHS*REPGPTLTTGE Trigger: CTCACCAGTGGTGAGCGTTGGGCCAGGCTCGCGGCAGGAGTGTGCCCCAGCCTCCTTTCCTACCCTGCGCTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| 3UTR CCA 72 bp | GCGTACTGCTATTCCGGGAAGAAACGGAGGGCCAAGTaGGAGCACCGGGCCCCACCTCCAAGGGGGAGAAGG | + |
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Preference number: 3 (lower is better) Translates to: AYCYSGKKRRAK*EHRAPPPRGRR Trigger: CCTTCTCCCCCTTGGAGGTGGGGCCCGGTGCTCCCACTTGGCCCTCCGTTTCTTCCCGGAATAGCAGTACGC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| 3UTR CCA 72 bp | GGTGAGACAGAAATGCTGGAAGCTCGGGCCTGCGGGTaGGGAGCTAGATCAAGGGCAGCTGAAGGGGCGACA | + |
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Preference number: 3 (lower is better) Translates to: GETEMLEARACG*GARSRAAEGAT Trigger: TGTCGCCCCTTCAGCTGCCCTTGATCTAGCTCCCCACCCGCAGGCCCGAGCTTCCAGCATTTCTGTCTCACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| 3UTR GCA 72 bp | ACCACTGGTGAGACAGAAATGCTGGAAGCTCGGGCCTaGGGGTGGGGAGCTAGATCAAGGGCAGCTGAAGGG | + |
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Preference number: 3 (lower is better) Translates to: TTGETEMLEARA*GWGARSRAAEG Trigger: CCCTTCAGCTGCCCTTGATCTAGCTCCCCACCCGCAGGCCCGAGCTTCCAGCATTTCTGTCTCACCAGTGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| 3UTR TCA 72 bp | TGCGCCCTGACCAGCCTAGCCCCGACCCCTGTATCCTaGCTTAGCTGTTTCCTTCACTTCCGATCCTCTAGC | + |
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Preference number: 3 (lower is better) Translates to: CALTSLAPTPVS*LSCFLHFRSSS Trigger: GCTAGAGGATCGGAAGTGAAGGAAACAGCTAAGTCAGGATACAGGGGTCGGGGCTAGGCTGGTCAGGGCGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| 3UTR TCA 72 bp | CTGACTATGTACAGCATTCCCGCTGAGGCGGAAGCTTaGATCAGTCCAGCGCAGGGTAGGAAAGGAGGCTGG | + |
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Preference number: 3 (lower is better) Translates to: LTMYSIPAEAEA*ISPAQGRKGGW Trigger: CCAGCCTCCTTTCCTACCCTGCGCTGGACTGATTCAAGCTTCCGCCTCAGCGGGAATGCTGTACATAGTCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| 3UTR-3UTR CAA 90 bp | CCCCTGTATCCTGACTTAGCTGTTTCCTTCACTTCCGATCCTCTAGCGCCCAGCTTAAAGTTCTGTTTCTaGGACGCTAAAACAAGAGAG | + |
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Preference number: 3 (lower is better) Translates to: PLYPDLAVSFTSDPLAPSLKFCF*DAKTRE Trigger: CTCTCTTGTTTTAGCGTCCAAGAAACAGAACTTTAA...GCTGGGCGCTAGAGGATCGGAAGTGAAGGAAACAGCTAAGTCAGGATACAGGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| 3UTR CCA 72 bp | AGAGAGAGAGAGAGAGAGAGAGAGAAACATTGGACCTaGAACTCGGGCTTGGTTTTCTTTCCACAATGCTGT | + |
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Preference number: 3 (lower is better) Translates to: REREREREKHWT*NSGLVFFPQCC Trigger: ACAGCATTGTGGAAAGAAAACCAAGCCCGAGTTCCAGGTCCAATGTTTCTCTCTCTCTCTCTCTCTCTCTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| 3UTR CCA 72 bp | GAGAGAGAGAGAAACATTGGACCTGGAACTCGGGCTTaGTTTTCTTTCCACAATGCTGTAATTTCACCTTGT | + |
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Preference number: 3 (lower is better) Translates to: ERERNIGPGTRA*FSFHNAVISPC Trigger: ACAAGGTGAAATTACAGCATTGTGGAAAGAAAACCAAGCCCGAGTTCCAGGTCCAATGTTTCTCTCTCTCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| 3UTR TCA 72 bp | TTAGGAGTGTGTATGTATGGACACACTCCAAACGGTTaGTATACGCCAGTTAGTGACTTCAGTGTCCAGAAA | + |
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Preference number: 3 (lower is better) Translates to: LGVCMYGHTPNG*YTPVSDFSVQK Trigger: TTTCTGGACACTGAAGTCACTAACTGGCGTATATCAACCGTTTGGAGTGTGTCCATACATACACACTCCTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| 3UTR TCA 72 bp | GGACAAATCAAATTTACAAATTACTTTCCCACCTACTaGACCAAGCGGCCAAAACCAAAACCGATAGGTACA | + |
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Preference number: 3 (lower is better) Translates to: GQIKFTNYFPTY*TKRPKPKPIGT Trigger: TGTACCTATCGGTTTTGGTTTTGGCCGCTTGGTTCAGTAGGTGGGAAAGTAATTTGTAAATTTGATTTGTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| 3UTR TCA 72 bp | GGAGACGGACTGCCTTACATCTCAACAAGTAATTTGTaGTCTTCACATCGGACAAATCAAATTTACAAATTA | + |
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Preference number: 3 (lower is better) Translates to: GDGLPYISTSNL*SSHRTNQIYKL Trigger: TAATTTGTAAATTTGATTTGTCCGATGTGAAGATCACAAATTACTTGTTGAGATGTAAGGCAGTCCGTCTCC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR TCA 90 bp | TGGAAGCTCGGGCCTGCGGGTGGGGAGCTAGATCAAGGGCAGCTGAAGGGGCGAGAGCACGTCCAGCTGTaGGCGCGTGAAGGTGGTGCG | + |
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Preference number: 4 (lower is better) Translates to: WKLGPAGGELDQGQLKGREHVQL*AREGGA Trigger: CGCACCACCTTCACGCGCTCACAGCTGGACGTGCTC...TCGCCCCTTCAGCTGCCCTTGATCTAGCTCCCCACCCGCAGGCCCGAGCTTCCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR TCA 90 bp | AGGGCCAAGTGGGAGCACCGGGCCCCACCTCCAAGGGGGAGAAGGGCTGCATCCCCACCTCCTCGCGCATaGAGATGTCTGGGTAGCGAG | + |
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Preference number: 4 (lower is better) Translates to: RAKWEHRAPPPRGRRAASPPPRA*RCLGSE Trigger: CTCGCTACCCAGACATCTTCATGCGCGAGGAGGTGG...GGATGCAGCCCTTCTCCCCCTTGGAGGTGGGGCCCGGTGCTCCCACTTGGCCCT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR TCA 90 bp | ACCTCCAAGGGGGAGAAGGGCTGCATCCTCCACCCCCAACCAAGTGGCACACAGTACGGATGTCGGCGCTaGGCCCGGCGAGATGGAGGC | + |
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Preference number: 4 (lower is better) Translates to: TSKGEKGCILHPQPSGTQYGCRR*ARRDGG Trigger: GCCTCCATCTCGCCGGGCTCAGCGCCGACATCCGTA...CTGTGTGCCACTTGGTTGGGGGTGGAGGATGCAGCCCTTCTCCCCCTTGGAGGT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR GCA 90 bp | GCTGTTTCCTTCACTTCCGATCCTCTAGCGCCCAGCTTCCTGGAACCAAGCGGGGTGCGCTCCCGTCGCTaGTTCCGCGGGGTGGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: AVSFTSDPLAPSFLEPSGVRSRR*FRGVAG Trigger: CCCTGCCACCCCGCGGAAGCAGCGACGGGAGCGCAC...CCCGCTTGGTTCCAGGAAGCTGGGCGCTAGAGGATCGGAAGTGAAGGAAACAGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR GCA 90 bp | TGGAAGCTCGGGCCTGCGGGTGGGGAGCTAGATCAAGGGCAGCTGAAGGGGCGACTACCGAGCGCTGCATaGACGAGGCGTTGCTCGGAG | + |
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Preference number: 4 (lower is better) Translates to: WKLGPAGGELDQGQLKGRLPSAA*TRRCSE Trigger: CTCCGAGCAACGCCTCGTGCATGCAGCGCTCGGTAG...TCGCCCCTTCAGCTGCCCTTGATCTAGCTCCCCACCCGCAGGCCCGAGCTTCCA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR CCA 90 bp | AGGGCCAAGTGGGAGCACCGGGCCCCACCTCCAAGGGGGAGAAGGGCTGCATCCTGGTGGCCTGAAGATTaGCTCAGTGGGTGGTGCGCA | + |
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Preference number: 4 (lower is better) Translates to: RAKWEHRAPPPRGRRAASWWPED*LSGWCA Trigger: TGCGCACCACCCACTGAGCCAATCTTCAGGCCACCA...GGATGCAGCCCTTCTCCCCCTTGGAGGTGGGGCCCGGTGCTCCCACTTGGCCCT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR GCA 90 bp | TGGAAGCTCGGGCCTGCGGGTGGGGAGCTAGATCAAGGGCAGCTGAAGGGGCGAAGCCATGGAGGAGGGTaGCATGGGGCTAAGCTGGTG | + |
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Preference number: 4 (lower is better) Translates to: WKLGPAGGELDQGQLKGRSHGGG*HGAKLV Trigger: CACCAGCTTAGCCCCATGGCACCCTCCTCCATGGCT...TCGCCCCTTCAGCTGCCCTTGATCTAGCTCCCCACCCGCAGGCCCGAGCTTCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR CCA 90 bp | GCTGTTTCCTTCACTTCCGATCCTCTAGCGCCCAGCTTCCTGGAACCAAGCGGGGGACGCTGCTGCCACTaGGTTCCCACCCAGGCCCGC | + |
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Preference number: 4 (lower is better) Translates to: AVSFTSDPLAPSFLEPSGGRCCH*VPTQAR Trigger: GCGGGCCTGGGTGGGAACCCAGTGGCAGCAGCGTCC...CCCGCTTGGTTCCAGGAAGCTGGGCGCTAGAGGATCGGAAGTGAAGGAAACAGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR CCA 90 bp | TGGAAGCTCGGGCCTGCGGGTGGGGAGCTAGATCAAGGGCAGCTGAAGGGGCGAGGTGATGAGAGTGCATaGGCGCTAGGTAGGAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: WKLGPAGGELDQGQLKGRGDESA*ALGRSC Trigger: GCAGCTCCTACCTAGCGCCCATGCACTCTCATCACC...TCGCCCCTTCAGCTGCCCTTGATCTAGCTCCCCACCCGCAGGCCCGAGCTTCCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR TCA 90 bp | CCCCTGTATCCTGACTTAGCTGTTTCCTTCACTTCCGATCCTCTAGCGCCCAGCCCAGCTGTGAGCGCGTaGAGGTGGTGCGCTCCCGTC | + |
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Preference number: 4 (lower is better) Translates to: PLYPDLAVSFTSDPLAPSPAVSA*RWCAPV Trigger: GACGGGAGCGCACCACCTTCACGCGCTCACAGCTGG...GCTGGGCGCTAGAGGATCGGAAGTGAAGGAAACAGCTAAGTCAGGATACAGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR GCA 90 bp | CCCCTGTATCCTGACTTAGCTGTTTCCTTCACTTCCGATCCTCTAGCGCCCAGCTTCCCGCTCTGCTGCTaGTGGCGGCACTTGGCGCGG | + |
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Preference number: 4 (lower is better) Translates to: PLYPDLAVSFTSDPLAPSFPLCC*WRHLAR Trigger: CCGCGCCAAGTGCCGCCAGCAGCAGCAGAGCGGGAA...GCTGGGCGCTAGAGGATCGGAAGTGAAGGAAACAGCTAAGTCAGGATACAGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR TCA 90 bp | GCTGTTTCCTTCACTTCCGATCCTCTAGCGCCCAGCTTCCTGGAACCAAGCGGGGTGGTGGTGGTGGCCTaGAGATTGGCTCAGTGGGTG | + |
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Preference number: 4 (lower is better) Translates to: AVSFTSDPLAPSFLEPSGVVVVA*RLAQWV Trigger: CACCCACTGAGCCAATCTTCAGGCCACCACCACCAC...CCCGCTTGGTTCCAGGAAGCTGGGCGCTAGAGGATCGGAAGTGAAGGAAACAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR GCA 90 bp | CAAGGGCAGCTGAAGGGGCGACAGTCTGCTAGGAGAAACAGTGGAGGGTTTGATCCATTCCCGCTCTGCTaGTGCTGGCGGCACTTGGCG | + |
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Preference number: 4 (lower is better) Translates to: QGQLKGRQSARRNSGGFDPFPLC*CWRHLA Trigger: CGCCAAGTGCCGCCAGCAGCAGCAGAGCGGGAATGG...ATCAAACCCTCCACTGTTTCTCCTAGCAGACTGTCGCCCCTTCAGCTGCCCTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR CCA 90 bp | CCCCTGTATCCTGACTTAGCTGTTTCCTTCACTTCCGATCCTCTAGCGCCCAGCGCTCGGAGCGGCCAGTaGCTCTGGCACCGATACGGA | + |
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Preference number: 4 (lower is better) Translates to: PLYPDLAVSFTSDPLAPSARSGQ*LWHRYG Trigger: TCCGTATCGGTGCCAGAGCCACTGGCCGCTCCGAGC...GCTGGGCGCTAGAGGATCGGAAGTGAAGGAAACAGCTAAGTCAGGATACAGGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR CCA 90 bp | CAAGGGCAGCTGAAGGGGCGACAGTCTGCTAGGAGAAACAGTGGAGGGTTTGATGATGATGGCCAGCCATaGAGGAGGGTGCCATGGGGC | + |
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Preference number: 4 (lower is better) Translates to: QGQLKGRQSARRNSGGFDDDGQP*RRVPWG Trigger: GCCCCATGGCACCCTCCTCCATGGCTGGCCATCATC...ATCAAACCCTCCACTGTTTCTCCTAGCAGACTGTCGCCCCTTCAGCTGCCCTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR GCA 90 bp | CAAGGGCAGCTGAAGGGGCGACAGTCTGCTAGGAGAAACAGTGGAGGGTTTGATGTTCCATTCCCGCTCTaGTGCTGCTGGCGGCACTTG | + |
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Preference number: 4 (lower is better) Translates to: QGQLKGRQSARRNSGGFDVPFPL*CCWRHL Trigger: CAAGTGCCGCCAGCAGCAGCAGAGCGGGAATGGAAC...ATCAAACCCTCCACTGTTTCTCCTAGCAGACTGTCGCCCCTTCAGCTGCCCTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR CCA 90 bp | GACACACTCCAAACGGTTGATATACGCCAGTTAGTGACTTCAGTGTCCAGAAAGCCGCTCTGCTGCTGCTaGCGGCACTTGGCGCGGCGG | + |
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Preference number: 4 (lower is better) Translates to: DTLQTVDIRQLVTSVSRKPLCCC*RHLARR Trigger: CCGCCGCGCCAAGTGCCGCCAGCAGCAGCAGAGCGG...CTTTCTGGACACTGAAGTCACTAACTGGCGTATATCAACCGTTTGGAGTGTGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR CCA 90 bp | GCTGTTTCCTTCACTTCCGATCCTCTAGCGCCCAGCTTCCTGGAACCAAGCGGGCCCGTTCATGCCGTATaGGGGTTGTTTGAGGTAAGA | + |
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Preference number: 4 (lower is better) Translates to: AVSFTSDPLAPSFLEPSGPVHAV*GLFEVR Trigger: TCTTACCTCAAACAACCCCCATACGGCATGAACGGG...CCCGCTTGGTTCCAGGAAGCTGGGCGCTAGAGGATCGGAAGTGAAGGAAACAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR CCA 90 bp | AACCAAGCGGCCAAAACCAAAACCGATAGGTACACAGGTACTCTCCGCAGATTTGGTGCAGGAGGTCCATaGCAGGGCCAGCTAGGCCCA | + |
|
Preference number: 4 (lower is better) Translates to: NQAAKTKTDRYTGTLRRFGAGGP*QGQLGP Trigger: TGGGCCTAGCTGGCCCTGCCATGGACCTCCTGCACC...AAATCTGCGGAGAGTACCTGTGTACCTATCGGTTTTGGTTTTGGCCGCTTGGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR GCA 90 bp | TGTTTCCTTCACTTCCGATCCTCTAGCGCCCAGCTTCCTGGAACCAAGCGGGTTCAGGTTGATCTTGAGTaGCACCTCCTCGCGCATGAA | + |
|
Preference number: 4 (lower is better) Translates to: CFLHFRSSSAQLPGTKRVQVDLE*HLLAHE Trigger: TTCATGCGCGAGGAGGTGGCACTCAAGATCAACCTG...AACCCGCTTGGTTCCAGGAAGCTGGGCGCTAGAGGATCGGAAGTGAAGGAAACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR CCA 90 bp | CAAGGGCAGCTGAAGGGGCGACAGTCTGCTAGGAGAAACAGTGGAGGGTTTGATCTGGACTCTGGACTCTaGCAGGTTGATCTTGAGTGC | + |
|
Preference number: 4 (lower is better) Translates to: QGQLKGRQSARRNSGGFDLDSGL*QVDLEC Trigger: GCACTCAAGATCAACCTGCCAGAGTCCAGAGTCCAG...ATCAAACCCTCCACTGTTTCTCCTAGCAGACTGTCGCCCCTTCAGCTGCCCTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR CCA 90 bp | GTACTCTCCGCAGATTTCGGAGAAGGAAGGTTCACTAAAAACTCACAGAACAGACTGAGCCCGGCGAGATaGAGGCCGGGCTCCAGATGG | + |
|
Preference number: 4 (lower is better) Translates to: VLSADFGEGRFTKNSQNRLSPAR*RPGSRW Trigger: CCATCTGGAGCCCGGCCTCCATCTCGCCGGGCTCAG...TCTGTTCTGTGAGTTTTTAGTGAACCTTCCTTCTCCGAAATCTGCGGAGAGTAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR TCA 90 bp | GTACTCTCCGCAGATTTCGGAGAAGGAAGGTTCACTAAAAACTCACAGAACAGACTGGCCGCTGCTCTCTaGACCCGAGCTCTCGCGTAC | + |
|
Preference number: 4 (lower is better) Translates to: VLSADFGEGRFTKNSQNRLAAAL*TRALAY Trigger: GTACGCGAGAGCTCGGGTTCAGAGAGCAGCGGCCAG...TCTGTTCTGTGAGTTTTTAGTGAACCTTCCTTCTCCGAAATCTGCGGAGAGTAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR GCA 90 bp | AACCAAGCGGCCAAAACCAAAACCGATAGGTACACAGGTACTCTCCGCAGATTTTGGGTAGCGAGTCTTTaGGAACAGCGCCTCGAGCAC | + |
|
Preference number: 4 (lower is better) Translates to: NQAAKTKTDRYTGTLRRFWVASL*EQRLEH Trigger: GTGCTCGAGGCGCTGTTCGCAAAGACTCGCTACCCA...AAATCTGCGGAGAGTACCTGTGTACCTATCGGTTTTGGTTTTGGCCGCTTGGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR TCA 90 bp | GTACTCTCCGCAGATTTCGGAGAAGGAAGGTTCACTAAAAACTCACAGAACAGAAGCAATCGGCAGAATTaGAGGCGAGCCCAGAGCCTC | + |
|
Preference number: 4 (lower is better) Translates to: VLSADFGEGRFTKNSQNRSNRQN*RRAQSL Trigger: GAGGCTCTGGGCTCGCCTTCAATTCTGCCGATTGCT...TCTGTTCTGTGAGTTTTTAGTGAACCTTCCTTCTCCGAAATCTGCGGAGAGTAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR CCA 90 bp | GTACTCTCCGCAGATTTCGGAGAAGGAAGGTTCACTAAAAACTCACAGAACAGACGAGCTCTCGCGTACTaGAGACGACTTCTTCTTGAC | + |
|
Preference number: 4 (lower is better) Translates to: VLSADFGEGRFTKNSQNRRALAY*RRLLLD Trigger: GTCAAGAAGAAGTCGTCTCCAGTACGCGAGAGCTCG...TCTGTTCTGTGAGTTTTTAGTGAACCTTCCTTCTCCGAAATCTGCGGAGAGTAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS GCA 90 bp | GCTCCAGATGGACGAAGCAGTAGGCGTGCTCAGAGAGGACGCTGCTaGCACTGGGTTCCCACCCAGGCCCGCGGCCGCAGCAGCCGCGGG | + |
|
Preference number: 5 (lower is better) Translates to: APDGRSSRRAQRGRC*HWVPTQARGRSSRG Trigger: CCCGCGGCTGCTGCGGCCGCGGGCCTGGGTGGGAACCCAGTGGCAGCAGCGTCCTCTCTGAGCACGCCTACTGCTTCGTCCATCTGGAGC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS GCA 90 bp | CGGGCTCCAGATGGACGAAGCAGTAGGCGTGCTCAGAGAGGACGCTaGTGCCACTGGGTTCCCACCCAGGCCCGCGGCCGCAGCAGCCGC | + |
|
Preference number: 5 (lower is better) Translates to: RAPDGRSSRRAQRGR*CHWVPTQARGRSSR Trigger: GCGGCTGCTGCGGCCGCGGGCCTGGGTGGGAACCCAGTGGCAGCAGCGTCCTCTCTGAGCACGCCTACTGCTTCGTCCATCTGGAGCCCG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS CCA 90 bp | GATGGACGAAGCAGTAGGCGTGCTCAGAGAGGACGCTGCTGCCACTaGGTTCCCACCCAGGCCCGCGGCCGCAGCAGCCGCGGGGTTGGC | + |
|
Preference number: 5 (lower is better) Translates to: DGRSSRRAQRGRCCH*VPTQARGRSSRGVG Trigger: GCCAACCCCGCGGCTGCTGCGGCCGCGGGCCTGGGTGGGAACCCAGTGGCAGCAGCGTCCTCTCTGAGCACGCCTACTGCTTCGTCCATC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS TCA 90 bp | GCCCGCGGCCGCAGCAGCCGCGGGGTTGGCGGAGGCACTGGACGCTaGGCTAGACGAAGAAGCAGAGCTAGATACGGCGGGCGGCGTGAA | + |
|
Preference number: 5 (lower is better) Translates to: ARGRSSRGVGGGTGR*ARRRSRARYGGRRE Trigger: TTCACGCCGCCCGCCGTATCTAGCTCTGCTTCTTCGTCTAGCTCAGCGTCCAGTGCCTCCGCCAACCCCGCGGCTGCTGCGGCCGCGGGC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS GCA 90 bp | CAGTGGCCGCACCTGCGGCTACCGAGCGCTGCATGCACGAGGCGTTaGTCGGAGCGGCCAGTGGCTCTGGCACCGATACGGATGTCGGCG | + |
|
Preference number: 5 (lower is better) Translates to: QWPHLRLPSAACTRR*SERPVALAPIRMSA Trigger: CGCCGACATCCGTATCGGTGCCAGAGCCACTGGCCGCTCCGAGCAACGCCTCGTGCATGCAGCGCTCGGTAGCCGCAGGTGCGGCCACTG 70% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS GCA 90 bp | AGGAGGCTGCGGCAGTGGCCGCACCTGCGGCTACCGAGCGCTGCATaGACGAGGCGTTGCTCGGAGCGGCCAGTGGCTCTGGCACCGATA | + |
|
Preference number: 5 (lower is better) Translates to: RRLRQWPHLRLPSAA*TRRCSERPVALAPI Trigger: TATCGGTGCCAGAGCCACTGGCCGCTCCGAGCAACGCCTCGTGCATGCAGCGCTCGGTAGCCGCAGGTGCGGCCACTGCCGCAGCCTCCT 70% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS GCA 90 bp | CTGACCATAGCTTCCGCCCTGGCCATAGGACATAGGGTAGGAGGCTaGGGCAGTGGCCGCACCTGCGGCTACCGAGCGCTGCATGCACGA | + |
|
Preference number: 5 (lower is better) Translates to: LTIASALAIGHRVGG*GSGRTCGYRALHAR Trigger: TCGTGCATGCAGCGCTCGGTAGCCGCAGGTGCGGCCACTGCCGCAGCCTCCTACCCTATGTCCTATGGCCAGGGCGGAAGCTATGGTCAG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS TCA 90 bp | AGCAGAGCTAGATACGGCGGGCGGCGTGAACTGGCCGCTGCTCTCTaGACCCGAGCTCTCGCGTACTGGAGACGACTTCTTCTTGACCGG | + |
|
Preference number: 5 (lower is better) Translates to: SRARYGGRRELAAAL*TRALAYWRRLLLDR Trigger: CCGGTCAAGAAGAAGTCGTCTCCAGTACGCGAGAGCTCGGGTTCAGAGAGCAGCGGCCAGTTCACGCCGCCCGCCGTATCTAGCTCTGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006071.14 ENSMUST00000147486.3 |
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| CDS GCA 90 bp | GTGCGCATGAGGGTGATGGTGATGATGGCCAGCCATGGAGGAGGGTaGCATGGGGCTAAGCTGGTGCGGGTGGTGATGAGAGTGCATGGG | + |
|
Preference number: 5 (lower is better) Translates to: VRMRVMVMMASHGGG*HGAKLVRVVMRVHG Trigger: CCCATGCACTCTCATCACCACCCGCACCAGCTTAGCCCCATGGCACCCTCCTCCATGGCTGGCCATCATCACCATCACCCTCATGCGCAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS CCA 90 bp | GAGCTAGACGAAGAAGCAGAGCTAGATACGGCGGGCGGCGTGAACTaGCCGCTGCTCTCTGAACCCGAGCTCTCGCGTACTGGAGACGAC | + |
|
Preference number: 5 (lower is better) Translates to: ELDEEAELDTAGGVN*PLLSEPELSRTGDD Trigger: GTCGTCTCCAGTACGCGAGAGCTCGGGTTCAGAGAGCAGCGGCCAGTTCACGCCGCCCGCCGTATCTAGCTCTGCTTCTTCGTCTAGCTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006071.14 ENSMUST00000147486.3 |
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| CDS GCA 90 bp | GCTGGTGCGGGTGGTGATGAGAGTGCATGGGCGCTAGGTAGGAGCTaGAGTCTACACCGCCAAAGTAAGAAGAGGAGGGCGCGGGGTATC | + |
|
Preference number: 5 (lower is better) Translates to: AGAGGDESAWALGRS*SLHRQSKKRRARGI Trigger: GATACCCCGCGCCCTCCTCTTCTTACTTTGGCGGTGTAGACTGCAGCTCCTACCTAGCGCCCATGCACTCTCATCACCACCCGCACCAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR CAA 90 bp | GGAGGGCCAAGTGGGAGCACCGGGCCCCACCTCCAAGGGGGAGAAGGGCTGCATCATGCCGTATGGGGGTaGTTTGAGGTAAGACATCAT | + |
|
Preference number: 5 (lower is better) Translates to: GGPSGSTGPHLQGGEGLHHAVWG*FEVRHH Trigger: ATGATGTCTTACCTCAAACAACCCCCATACGGCATG...ATGCAGCCCTTCTCCCCCTTGGAGGTGGGGCCCGGTGCTCCCACTTGGCCCTCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR CAA 90 bp | ACCTCCAAGGGGGAGAAGGGCTGCATCCTCCACCCCCAACCAAGTGGCACACAGCTGGACTCTGGCAGGTaGATCTTGAGTGCCACCTCC | + |
|
Preference number: 5 (lower is better) Translates to: TSKGEKGCILHPQPSGTQLDSGR*ILSATS Trigger: GGAGGTGGCACTCAAGATCAACCTGCCAGAGTCCAG...CTGTGTGCCACTTGGTTGGGGGTGGAGGATGCAGCCCTTCTCCCCCTTGGAGGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS TCA 90 bp | TGCTCTCTGAACCCGAGCTCTCGCGTACTGGAGACGACTTCTTCTTaGCCGGCCGGGTTTTCGTTCCATTCCCGCTCTGCTGCTGCTGGC | + |
|
Preference number: 5 (lower is better) Translates to: CSLNPSSRVLETTSS*PAGFSFHSRSAAAG Trigger: GCCAGCAGCAGCAGAGCGGGAATGGAACGAAAACCCGGCCGGTCAAGAAGAAGTCGTCTCCAGTACGCGAGAGCTCGGGTTCAGAGAGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006071.14 ENSMUST00000147486.3 |
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| CDS-3UTR CAA 90 bp | ACCTCCAAGGGGGAGAAGGGCTGCATCCTCCACCCCCAACCAAGTGGCACACAGGAACCGCCACGAGGCTaGGTCCTTATAGTCCAGACA | + |
|
Preference number: 5 (lower is better) Translates to: TSKGEKGCILHPQPSGTQEPPRG*VLIVQT Trigger: TGTCTGGACTATAAGGACCAAGCCTCGTGGCGGTTC...CTGTGTGCCACTTGGTTGGGGGTGGAGGATGCAGCCCTTCTCCCCCTTGGAGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR CAA 90 bp | CAAGGGCAGCTGAAGGGGCGACAGTCTGCTAGGAGAAACAGTGGAGGGTTTGATCTGGGTAGCGAGTCTTaGCGAACAGCGCCTCGAGCA | + |
|
Preference number: 5 (lower is better) Translates to: QGQLKGRQSARRNSGGFDLGSES*RTAPRA Trigger: TGCTCGAGGCGCTGTTCGCAAAGACTCGCTACCCAG...ATCAAACCCTCCACTGTTTCTCCTAGCAGACTGTCGCCCCTTCAGCTGCCCTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR CAA 90 bp | GTACTCTCCGCAGATTTCGGAGAAGGAAGGTTCACTAAAAACTCACAGAACAGAAAGCAATCGGCAGAATaGAAGGCGAGCCCAGAGCCT | + |
|
Preference number: 5 (lower is better) Translates to: VLSADFGEGRFTKNSQNRKQSAE*KASPEP Trigger: AGGCTCTGGGCTCGCCTTCAATTCTGCCGATTGCTT...TCTGTTCTGTGAGTTTTTAGTGAACCTTCCTTCTCCGAAATCTGCGGAGAGTAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS-3UTR CAA 90 bp | AACCAAGCGGCCAAAACCAAAACCGATAGGTACACAGGTACTCTCCGCAGATTTAGACAGTCGGGAGAGTaGAAATTGAGTTTCCAGGCA | + |
|
Preference number: 5 (lower is better) Translates to: NQAAKTKTDRYTGTLRRFRQSGE*KLSFQA Trigger: TGCCTGGAAACTCAATTTCAACTCTCCCGACTGTCT...AAATCTGCGGAGAGTACCTGTGTACCTATCGGTTTTGGTTTTGGCCGCTTGGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS GCA 72 bp | CGGCAGTGGCCGCACCTGCGGCTACCGAGCGCTGCATaGACGAGGCGTTGCTCGGAGCGGCCAGTGGCTCTG | + |
|
Preference number: 6 (lower is better) Translates to: RQWPHLRLPSAA*TRRCSERPVAL Trigger: CAGAGCCACTGGCCGCTCCGAGCAACGCCTCGTGCATGCAGCGCTCGGTAGCCGCAGGTGCGGCCACTGCCG 72% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS CCA 72 bp | AGCAGTAGGCGTGCTCAGAGAGGACGCTGCTGCCACTaGGTTCCCACCCAGGCCCGCGGCCGCAGCAGCCGC | + |
|
Preference number: 6 (lower is better) Translates to: SSRRAQRGRCCH*VPTQARGRSSR Trigger: GCGGCTGCTGCGGCCGCGGGCCTGGGTGGGAACCCAGTGGCAGCAGCGTCCTCTCTGAGCACGCCTACTGCT 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS GCA 72 bp | GGACGAAGCAGTAGGCGTGCTCAGAGAGGACGCTGCTaGCACTGGGTTCCCACCCAGGCCCGCGGCCGCAGC | + |
|
Preference number: 6 (lower is better) Translates to: GRSSRRAQRGRC*HWVPTQARGRS Trigger: GCTGCGGCCGCGGGCCTGGGTGGGAACCCAGTGGCAGCAGCGTCCTCTCTGAGCACGCCTACTGCTTCGTCC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS CAA 90 bp | GCAGTGGCCGCACCTGCGGCTACCGAGCGCTGCATGCACGAGGCGTaGCTCGGAGCGGCCAGTGGCTCTGGCACCGATACGGATGTCGGC | + |
|
Preference number: 6 (lower is better) Translates to: AVAAPAATERCMHEA*LGAASGSGTDTDVG Trigger: GCCGACATCCGTATCGGTGCCAGAGCCACTGGCCGCTCCGAGCAACGCCTCGTGCATGCAGCGCTCGGTAGCCGCAGGTGCGGCCACTGC 70% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS GCA 72 bp | CACCTGCGGCTACCGAGCGCTGCATGCACGAGGCGTTaGTCGGAGCGGCCAGTGGCTCTGGCACCGATACGG | + |
|
Preference number: 6 (lower is better) Translates to: HLRLPSAACTRR*SERPVALAPIR Trigger: CCGTATCGGTGCCAGAGCCACTGGCCGCTCCGAGCAACGCCTCGTGCATGCAGCGCTCGGTAGCCGCAGGTG 69% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS GCA 72 bp | GCTTCCGCCCTGGCCATAGGACATAGGGTAGGAGGCTaGGGCAGTGGCCGCACCTGCGGCTACCGAGCGCTG | + |
|
Preference number: 6 (lower is better) Translates to: ASALAIGHRVGG*GSGRTCGYRAL Trigger: CAGCGCTCGGTAGCCGCAGGTGCGGCCACTGCCGCAGCCTCCTACCCTATGTCCTATGGCCAGGGCGGAAGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS CAA 72 bp | GCACCTGCGGCTACCGAGCGCTGCATGCACGAGGCGTaGCTCGGAGCGGCCAGTGGCTCTGGCACCGATACG | + |
|
Preference number: 6 (lower is better) Translates to: APAATERCMHEA*LGAASGSGTDT Trigger: CGTATCGGTGCCAGAGCCACTGGCCGCTCCGAGCAACGCCTCGTGCATGCAGCGCTCGGTAGCCGCAGGTGC 69% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS GCA 72 bp | GGACATAGGGTAGGAGGCTGCGGCAGTGGCCGCACCTaGGGCTACCGAGCGCTGCATGCACGAGGCGTTGCT | + |
|
Preference number: 6 (lower is better) Translates to: GHRVGGCGSGRT*GYRALHARGVA Trigger: AGCAACGCCTCGTGCATGCAGCGCTCGGTAGCCGCAGGTGCGGCCACTGCCGCAGCCTCCTACCCTATGTCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS TCA 72 bp | CGCAGCAGCCGCGGGGTTGGCGGAGGCACTGGACGCTaGGCTAGACGAAGAAGCAGAGCTAGATACGGCGGG | + |
|
Preference number: 6 (lower is better) Translates to: RSSRGVGGGTGR*ARRRSRARYGG Trigger: CCCGCCGTATCTAGCTCTGCTTCTTCGTCTAGCTCAGCGTCCAGTGCCTCCGCCAACCCCGCGGCTGCTGCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS TCA 72 bp | AGATACGGCGGGCGGCGTGAACTGGCCGCTGCTCTCTaGACCCGAGCTCTCGCGTACTGGAGACGACTTCTT | + |
|
Preference number: 6 (lower is better) Translates to: RYGGRRELAAAL*TRALAYWRRLL Trigger: AAGAAGTCGTCTCCAGTACGCGAGAGCTCGGGTTCAGAGAGCAGCGGCCAGTTCACGCCGCCCGCCGTATCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006071.14 ENSMUST00000147486.3 |
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| CDS CCA 72 bp | GAAGAAGCAGAGCTAGATACGGCGGGCGGCGTGAACTaGCCGCTGCTCTCTGAACCCGAGCTCTCGCGTACT | + |
|
Preference number: 6 (lower is better) Translates to: EEAELDTAGGVN*PLLSEPELSRT Trigger: AGTACGCGAGAGCTCGGGTTCAGAGAGCAGCGGCCAGTTCACGCCGCCCGCCGTATCTAGCTCTGCTTCTTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006071.14 ENSMUST00000147486.3 |
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| CDS GCA 72 bp | AGGGTGATGGTGATGATGGCCAGCCATGGAGGAGGGTaGCATGGGGCTAAGCTGGTGCGGGTGGTGATGAGA | + |
|
Preference number: 6 (lower is better) Translates to: RVMVMMASHGGG*HGAKLVRVVMR Trigger: TCTCATCACCACCCGCACCAGCTTAGCCCCATGGCACCCTCCTCCATGGCTGGCCATCATCACCATCACCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS CAA 90 bp | CTGCTCTCTGAACCCGAGCTCTCGCGTACTGGAGACGACTTCTTCTaGACCGGCCGGGTTTTCGTTCCATTCCCGCTCTGCTGCTGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: LLSEPELSRTGDDFF*TGRVFVPFPLCCCW Trigger: CCAGCAGCAGCAGAGCGGGAATGGAACGAAAACCCGGCCGGTCAAGAAGAAGTCGTCTCCAGTACGCGAGAGCTCGGGTTCAGAGAGCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006071.14 ENSMUST00000147486.3 |
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| CDS CAA 72 bp | GAACCCGAGCTCTCGCGTACTGGAGACGACTTCTTCTaGACCGGCCGGGTTTTCGTTCCATTCCCGCTCTGC | + |
|
Preference number: 6 (lower is better) Translates to: EPELSRTGDDFF*TGRVFVPFPLC Trigger: GCAGAGCGGGAATGGAACGAAAACCCGGCCGGTCAAGAAGAAGTCGTCTCCAGTACGCGAGAGCTCGGGTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006071.14 ENSMUST00000147486.3 |
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| CDS TCA 72 bp | AACCCGAGCTCTCGCGTACTGGAGACGACTTCTTCTTaGCCGGCCGGGTTTTCGTTCCATTCCCGCTCTGCT | + |
|
Preference number: 6 (lower is better) Translates to: NPSSRVLETTSS*PAGFSFHSRSA Trigger: AGCAGAGCGGGAATGGAACGAAAACCCGGCCGGTCAAGAAGAAGTCGTCTCCAGTACGCGAGAGCTCGGGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006071.14 ENSMUST00000147486.3 |
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| CDS GCA 72 bp | GGTGGTGATGAGAGTGCATGGGCGCTAGGTAGGAGCTaGAGTCTACACCGCCAAAGTAAGAAGAGGAGGGCG | + |
|
Preference number: 6 (lower is better) Translates to: GGDESAWALGRS*SLHRQSKKRRA Trigger: CGCCCTCCTCTTCTTACTTTGGCGGTGTAGACTGCAGCTCCTACCTAGCGCCCATGCACTCTCATCACCACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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| CDS TCA 72 bp | CGGCGGGCTCCTTGTAATCCAAGCAATCGGCAGAATTaGAGGCGAGCCCAGAGCCTCCATAACCTTGGTGGT | + |
|
Preference number: 6 (lower is better) Translates to: RRAPCNPSNRQN*RRAQSLHNLGG Trigger: ACCACCAAGGTTATGGAGGCTCTGGGCTCGCCTTCAATTCTGCCGATTGCTTGGATTACAAGGAGCCCGCCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006071.14 |
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