RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OTUD7B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038495

Ensembl transcript IDs: ENSMUST00000035519.12, ENSMUST00000090785.9, ENSMUST00000098849.3, ENSMUST00000132980.8, ENSMUST00000138206.8

Found 466 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TTCTGCCTTGAAGTCTCAAGTCAACTGTGTGCGCAGGAGCAGTACTaGCCTGGGGTAGTGCTAGCTAGCCCAGCCCTGCTCCCACCAGAC +
Preference number: 1 (lower is better)
Translates to: FCLEVSSQLCAQEQY*PGVVLASPALLPPD
Trigger: GTCTGGTGGGAGCAGGGCTGGGCTAGCTAGCACTACCCCAGGGCAGTACTGCTCCTGCGCACACAGTTGACTTGAGACTTCAAGGCAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR GCA 90 bp CTCTGGTCAGAGCAGAAGCTGTCCAGACTTGTGCTTTGTGCAAATTaGAAGGGAGCTCTCACCACTGGGTCCAGCCCTACCCCTCTGGAG +
Preference number: 1 (lower is better)
Translates to: LWSEQKLSRLVLCAN*KGALTTGSSPTPLE
Trigger: CTCCAGAGGGGTAGGGCTGGACCCAGTGGTGAGAGCTCCCTTGCAATTTGCACAAAGCACAAGTCTGGACAGCTTCTGCTCTGACCAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CCA 90 bp GTCCAGACTTGTGCTTTGTGCAAATTGCAAGGGAGCTCTCACCACTaGGTCCAGCCCTACCCCTCTGGAGAACAGGGCTGGCTCAGGAAA +
Preference number: 1 (lower is better)
Translates to: VQTCALCKLQGSSHH*VQPYPSGEQGWLRK
Trigger: TTTCCTGAGCCAGCCCTGTTCTCCAGAGGGGTAGGGCTGGACCCAGTGGTGAGAGCTCCCTTGCAATTTGCACAAAGCACAAGTCTGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR TCA 90 bp CCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAAAGGTGTaGGCCACCACTGCCCAGTTAAGCCAGCCTGAGTTAAGGGGTTTG +
Preference number: 1 (lower is better)
Translates to: PRTQKSAWQVLGLKV*ATTAQLSQPELRGL
Trigger: CAAACCCCTTAACTCAGGCTGGCTTAACTGGGCAGTGGTGGCTCACACCTTTAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR GCA 90 bp GAAATAGCTCTGGTCAGAGCAGAAGCTGTCCAGACTTGTGCTTTGTaGAAATTGCAAGGGAGCTCTCACCACTGGGTCCAGCCCTACCCC +
Preference number: 1 (lower is better)
Translates to: EIALVRAEAVQTCAL*KLQGSSHHWVQPYP
Trigger: GGGGTAGGGCTGGACCCAGTGGTGAGAGCTCCCTTGCAATTTGCACAAAGCACAAGTCTGGACAGCTTCTGCTCTGACCAGAGCTATTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CCA 90 bp GTTAAGGGGTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTaGGGATGGTACAGAGGATGCAGGGTGGAGAGAGTGGAAAGGAGG +
Preference number: 1 (lower is better)
Translates to: VKGFGGQPSGVLALS*GWYRGCRVERVERR
Trigger: CCTCCTTTCCACTCTCTCCACCCTGCATCCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAACCCCTTAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR TCA 90 bp TTCCCTACTTTCCCTTGGGCCCTGGGATTGGGACAGAAGAGGTTATaGGCTTCCCCCTTCTGCCTTGAAGTCTCAAGTCAACTGTGTGCG +
Preference number: 1 (lower is better)
Translates to: FPTFPWALGLGQKRL*ASPFCLEVSSQLCA
Trigger: CGCACACAGTTGACTTGAGACTTCAAGGCAGAAGGGGGAAGCTCATAACCTCTTCTGTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CCA 90 bp CCCATCACACACAGGACCCTCGTAAATAAGGAAGGTTTACTCACGTaGATGCTCCCCACACAACCCTCCCTTCTCCCCACCACAGTATCT +
Preference number: 1 (lower is better)
Translates to: PITHRTLVNKEGLLT*MLPTQPSLLPTTVS
Trigger: AGATACTGTGGTGGGGAGAAGGGAGGGTTGTGTGGGGAGCATCCACGTGAGTAAACCTTCCTTATTTACGAGGGTCCTGTGTGTGATGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR TCA 90 bp AGCTGGGTGTGGTGGTTCATGCCTAGGTATCAGCACTCAGAAGACTaGGGCAGGAGGGTTGCTATGAGTTGGAGGCTAACCTGGGTTATA +
Preference number: 1 (lower is better)
Translates to: SWVWWFMPRYQHSED*GRRVAMSWRLTWVI
Trigger: TATAACCCAGGTTAGCCTCCAACTCATAGCAACCCTCCTGCCTCAGTCTTCTGAGTGCTGATACCTAGGCATGAACCACCACACCCAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR TCA 90 bp AGAAGTGCACACAGGGTGACTGCAGCCAGGAAGAGGGGCTCACGGTaGAGGTTTCACCTGCATTATTCAAGCTTCAGAAACTGGGACAAG +
Preference number: 1 (lower is better)
Translates to: RSAHRVTAARKRGSR*RFHLHYSSFRNWDK
Trigger: CTTGTCCCAGTTTCTGAAGCTTGAATAATGCAGGTGAAACCTTCACCGTGAGCCCCTCTTCCTGGCTGCAGTCACCCTGTGTGCACTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR GCA 90 bp GCTCTTAGAAATAGCTCTGGTCAGAGCAGAAGCTGTCCAGACTTGTaGTTTGTGCAAATTGCAAGGGAGCTCTCACCACTGGGTCCAGCC +
Preference number: 1 (lower is better)
Translates to: ALRNSSGQSRSCPDL*FVQIARELSPLGPA
Trigger: GGCTGGACCCAGTGGTGAGAGCTCCCTTGCAATTTGCACAAAGCACAAGTCTGGACAGCTTCTGCTCTGACCAGAGCTATTTCTAAGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR GCA 90 bp TCCAGTTATAAACACAGAAAGAGGCCAAGGTCCTTCCCACCCCACTaGTTAGACAGCTTCTATCACTTCCTCTACCCCCAACTCACACAG +
Preference number: 1 (lower is better)
Translates to: SSYKHRKRPRSFPPH*LDSFYHFLYPQLTQ
Trigger: CTGTGTGAGTTGGGGGTAGAGGAAGTGATAGAAGCTGTCTAAGCAGTGGGGTGGGAAGGACCTTGGCCTCTTTCTGTGTTTATAACTGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CCA 90 bp GATAACATTCCATTAGTGGGTGATGACATACCTCAGCAGAGAAATTaGAGCCCAGAAACAGCCCCAGGTAACTCTGGACACGTGCAGTGC +
Preference number: 1 (lower is better)
Translates to: DNIPLVGDDIPQQRN*SPETAPGNSGHVQC
Trigger: GCACTGCACGTGTCCAGAGTTACCTGGGGCTGTTTCTGGGCTCCAATTTCTCTGCTGAGGTATGTCATCACCCACTAATGGAATGTTATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR TCA 90 bp AAGGTTTCACCTGCATTATTCAAGCTTCAGAAACTGGGACAAGTCTaGGGTGATGCTAGCAAGGCACGAGGCATTCACCTACCACTCACT +
Preference number: 1 (lower is better)
Translates to: KVSPALFKLQKLGQV*GDASKARGIHLPLT
Trigger: AGTGAGTGGTAGGTGAATGCCTCGTGCCTTGCTAGCATCACCTCAGACTTGTCCCAGTTTCTGAAGCTTGAATAATGCAGGTGAAACCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CCA 90 bp CATGAGCAGAGACTGGAACAAACAGGTATGTACTTGCTAGCAAGCTaGTCTAGACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCAC +
Preference number: 1 (lower is better)
Translates to: HEQRLEQTGMYLLAS*SRRLIVEVLKTAGH
Trigger: GTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGTCTAGACCAGCTTGCTAGCAAGTACATACCTGTTTGTTCCAGTCTCTGCTCATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CCA 90 bp CCAACTCACACAGCCAAGGGAAGGAGAGGGCACAGGAATTGTACATaGAAGCATGATAGTATTTTGTTAAACAGCTTAAGCACAGGAGGC +
Preference number: 1 (lower is better)
Translates to: PTHTAKGRRGHRNCT*KHDSILLNSLSTGG
Trigger: GCCTCCTGTGCTTAAGCTGTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCCCTTGGCTGTGTGAGTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR GCA 90 bp GATCACTCTGCACCCGTTCACCTGAAGAAACCCCATATACAAGGTTaGTTCTTACCACTCTTCTCTTTCCCAAAGGGAACTTGCTTTAAA +
Preference number: 1 (lower is better)
Translates to: DHSAPVHLKKPHIQG*FLPLFSFPKGTCFK
Trigger: TTTAAAGCAAGTTCCCTTTGGGAAAGAGAAGAGTGGTAAGAAGCAACCTTGTATATGGGGTTTCTTCAGGTGAACGGGTGCAGAGTGATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR TCA 90 bp TTTATTGAAAGAAAAATAAAGTGCCTGGAACCTTGGACATGGGAGTaGAAGGAAGAACAGCAAGAGCAAGATCTCAGAGAACGGGCTCTG +
Preference number: 1 (lower is better)
Translates to: FIERKIKCLEPWTWE*KEEQQEQDLRERAL
Trigger: CAGAGCCCGTTCTCTGAGATCTTGCTCTTGCTGTTCTTCCTTTCACTCCCATGTCCAAGGTTCCAGGCACTTTATTTTTCTTTCAATAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR GCA 90 bp GCACGAGGCATTCACCTACCACTCACTGGGAGAAAACTGAAGGAGTaGTTAAAACTCACGAATCAAGATAAGTACTGTCTTGATACAGTA +
Preference number: 1 (lower is better)
Translates to: ARGIHLPLTGRKLKE*LKLTNQDKYCLDTV
Trigger: TACTGTATCAAGACAGTACTTATCTTGATTCGTGAGTTTTAAGCACTCCTTCAGTTTTCTCCCAGTGAGTGGTAGGTGAATGCCTCGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CCA 90 bp GTTAAACAGCTTAAGCACAGGAGGCAATACACAATAACTTGTGACTaGGTATCCACAAGATATTCAGACACGAGTGCCTGTGTGACTCAT +
Preference number: 1 (lower is better)
Translates to: VKQLKHRRQYTITCD*VSTRYSDTSACVTH
Trigger: ATGAGTCACACAGGCACTCGTGTCTGAATATCTTGTGGATACCCAGTCACAAGTTATTGTGTATTGCCTCCTGTGCTTAAGCTGTTTAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR GCA 90 bp TTTAAACCACCCTTTCTGTGTAACCAGGCCAAGCACATACATTACTaGCTTGATCCTTCAGGGAGAATTTATTCAACCCTAATATCTACC +
Preference number: 1 (lower is better)
Translates to: FKPPFLCNQAKHIHY*LDPSGRIYSTLIST
Trigger: GGTAGATATTAGGGTTGAATAAATTCTCCCTGAAGGATCAAGGCAGTAATGTATGTGCTTGGCCTGGTTACACAGAAAGGGTGGTTTAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CCA 90 bp ACCTCCCAAGTGTACAATATAAAGCCATGGTCATTTCTGCTTTACTaGTCTATGGATTTTGGAAAGCTATGGAGAGGGAAGGTACTTCTA +
Preference number: 1 (lower is better)
Translates to: TSQVYNIKPWSFLLY*SMDFGKLWRGKVLL
Trigger: TAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAATCCATAGACCAGTAAAGCAGAAATGACCATGGCTTTATATTGTACACTTGGGAGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR GCA 90 bp CACCCACACACACCTAGTATTTCCCTACTTTCCCTTGGGCCCTGGGATTGGGACCTGCTCCCACCAGACTaGCAGCACTCCAGCCCCCAC +
Preference number: 2 (lower is better)
Translates to: HPHTPSISLLSLGPWDWDLLPPD*QHSSPH
Trigger: GTGGGGGCTGGAGTGCTGGCAGTCTGGTGGGAGCAG...GTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTGTGGGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCAGCCCTACCCCTCTaGAGAACAGGGCTGGCTCAG +
Preference number: 2 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTPALPL*RTGLAQ
Trigger: CTGAGCCAGCCCTGTTCTCCAGAGGGGTAGGGCTGG...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR GCA 90 bp GGTGACTGCAGCCAGGAAGAGGGGCTCACGGTGAAGGTTTCACCTGCATTATTCACCCCTCTCTGCACTTaGCCCATCAACACAGGGGCT +
Preference number: 2 (lower is better)
Translates to: GDCSQEEGLTVKVSPALFTPLCT*PINTGA
Trigger: AGCCCCTGTGTTGATGGGGCAAGTGCAGAGAGGGGT...GAATAATGCAGGTGAAACCTTCACCGTGAGCCCCTCTTCCTGGCTGCAGTCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR GCA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACATGCACACAGGGTGACTaGAGCCAGGAAGAGGGGCTC +
Preference number: 2 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTCTQGD*SQEEGL
Trigger: GAGCCCCTCTTCCTGGCTGCAGTCACCCTGTGTGCA...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CAA 90 bp CCCTGGGATTGGGACAGAAGAGGTTATGAGCTTCCCCCTTCTGCCTaGAAGTCTCAAGTCAACTGTGTGCGCAGGAGCAGTACTGCCCTG +
Preference number: 2 (lower is better)
Translates to: PWDWDRRGYELPPSA*KSQVNCVRRSSTAL
Trigger: CAGGGCAGTACTGCTCCTGCGCACACAGTTGACTTGAGACTTCAAGGCAGAAGGGGGAAGCTCATAACCTCTTCTGTCCCAATCCCAGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CAA 90 bp CACCCACCTCCCACCCACACACACCTAGTATTTCCCTACTTTCCCTaGGGCCCTGGGATTGGGACAGAAGAGGTTATGAGCTTCCCCCTT +
Preference number: 2 (lower is better)
Translates to: HPPPTHTHLVFPYFP*GPGIGTEEVMSFPL
Trigger: AAGGGGGAAGCTCATAACCTCTTCTGTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTGTGGGTGGGAGGTGGGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR TCA 90 bp TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTACAGCACTCAGAAGACTaGGGCAGGAGGGTTGCTATG +
Preference number: 2 (lower is better)
Translates to: CRPGWPRTQKSAWQVLGLQHSED*GRRVAM
Trigger: CATAGCAACCCTCCTGCCTCAGTCTTCTGAGTGCTG...TAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR TCA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACAGCACTCAGAAGACTaGGGCAGGAGGGTTGCTATG +
Preference number: 2 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTQHSED*GRRVAM
Trigger: CATAGCAACCCTCCTGCCTCAGTCTTCTGAGTGCTG...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTACAGCCTGTAGAAAGCTaGGTGTGGTGGTTCATGCCT +
Preference number: 2 (lower is better)
Translates to: CRPGWPRTQKSAWQVLGLQPVES*VWWFMP
Trigger: AGGCATGAACCACCACACCCAGCTTTCTACAGGCTG...TAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp GGTGACTGCAGCCAGGAAGAGGGGCTCACGGTGAAGGTTTCACCTGCATTATTCCAGCCTGTAGAAAGCTaGGTGTGGTGGTTCATGCCT +
Preference number: 2 (lower is better)
Translates to: GDCSQEEGLTVKVSPALFQPVES*VWWFMP
Trigger: AGGCATGAACCACCACACCCAGCTTTCTACAGGCTG...GAATAATGCAGGTGAAACCTTCACCGTGAGCCCCTCTTCCTGGCTGCAGTCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR TCA 90 bp AGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCTCAATGCTTCGTTGTGGGAGAAGGATaGCAGAAGTGCACACAGGGT +
Preference number: 2 (lower is better)
Translates to: RSPKDCWSPPPHHTPQCFVVGEG*QKCTQG
Trigger: ACCCTGTGTGCACTTCTGTCATCCTTCTCCCACAAC...GAAGCATTGAGGTGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR GCA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACTGGTTATAGGTTTGTaGCAGGAGCAAGGGCTGCTG +
Preference number: 2 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTLVIGL*QEQGLL
Trigger: CAGCAGCCCTTGCTCCTGGCACAAACCTATAACCAG...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGCCTCAGCAGAGAAATTaGAGCCCAGAAACAGCCCCA +
Preference number: 2 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRPQQRN*SPETAP
Trigger: TGGGGCTGTTTCTGGGCTCCAATTTCTCTGCTGAGG...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR TCA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGAAACTGGGACAAGTCTaGGGTGATGCTAGCAAGGCA +
Preference number: 2 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRKLGQV*GDASKA
Trigger: TGCCTTGCTAGCATCACCTCAGACTTGTCCCAGTTT...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR TCA 90 bp AGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCTCAATGCTTCCCTTGGACATGGGAGTaGAAGGAAGAACAGCAAGAG +
Preference number: 2 (lower is better)
Translates to: RSPKDCWSPPPHHTPQCFPWTWE*KEEQQE
Trigger: CTCTTGCTGTTCTTCCTTTCACTCCCATGTCCAAGG...GAAGCATTGAGGTGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp GGTGACTGCAGCCAGGAAGAGGGGCTCACGGTGAAGGTTTCACCTGCATTATTCGTAGAAAGCTGGGTGTaGTGGTTCATGCCTAGGTAT +
Preference number: 2 (lower is better)
Translates to: GDCSQEEGLTVKVSPALFVESWV*WFMPRY
Trigger: ATACCTAGGCATGAACCACCACACCCAGCTTTCTAC...GAATAATGCAGGTGAAACCTTCACCGTGAGCCCCTCTTCCTGGCTGCAGTCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CAA 90 bp TTAGAAATAGCTCTGGTCAGAGCAGAAGCTGTCCAGACTTGTGCTTaGTGCAAATTGCAAGGGAGCTCTCACCACTGGGTCCAGCCCTAC +
Preference number: 2 (lower is better)
Translates to: LEIALVRAEAVQTCA*CKLQGSSHHWVQPY
Trigger: GTAGGGCTGGACCCAGTGGTGAGAGCTCCCTTGCAATTTGCACAAAGCACAAGTCTGGACAGCTTCTGCTCTGACCAGAGCTATTTCTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR TCA 90 bp AGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCTCAATGCTTCTGTGCCAAAATCCCATaGCCTACTTTTCTTCTCCCC +
Preference number: 2 (lower is better)
Translates to: RSPKDCWSPPPHHTPQCFCAKIP*PTFLLP
Trigger: GGGGAGAAGAAAAGTAGGTCATGGGATTTTGGCACA...GAAGCATTGAGGTGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR GCA 90 bp AGAGAACGGGCTCTGTTCTCGGCTCGGGATCACCTCCCAAGTGTACAATATAAACTGAGGCAGGAGGGTTaGTATGAGTTGGAGGCTAAC +
Preference number: 2 (lower is better)
Translates to: RERALFSARDHLPSVQYKLRQEG*YELEAN
Trigger: GTTAGCCTCCAACTCATAGCAACCCTCCTGCCTCAG...TTTATATTGTACACTTGGGAGGTGATCCCGAGCCGAGAACAGAGCCCGTTCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp AGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCTCAATGCTTCTCACCTACCACTCACTaGGAGAAAACTGAAGGAGTG +
Preference number: 2 (lower is better)
Translates to: RSPKDCWSPPPHHTPQCFSPTTH*EKTEGV
Trigger: CACTCCTTCAGTTTTCTCCCAGTGAGTGGTAGGTGA...GAAGCATTGAGGTGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR TCA 90 bp AGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCTCAATGCTTCCCAGTCAGAGGTGTCTaGGTAACTCATAGACAATCA +
Preference number: 2 (lower is better)
Translates to: RSPKDCWSPPPHHTPQCFPVRGV*VTHRQS
Trigger: TGATTGTCTATGAGTTACTCAGACACCTCTGACTGG...GAAGCATTGAGGTGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR GCA 90 bp GGTGACTGCAGCCAGGAAGAGGGGCTCACGGTGAAGGTTTCACCTGCATTATTCAAGCACATACATTACTaGCTTGATCCTTCAGGGAGA +
Preference number: 2 (lower is better)
Translates to: GDCSQEEGLTVKVSPALFKHIHY*LDPSGR
Trigger: TCTCCCTGAAGGATCAAGGCAGTAATGTATGTGCTT...GAATAATGCAGGTGAAACCTTCACCGTGAGCCCCTCTTCCTGGCTGCAGTCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR GCA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACAAGCTGTCCAGACTTGTaGTTTGTGCAAATTGCAAGG +
Preference number: 2 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTSCPDL*FVQIAR
Trigger: CCTTGCAATTTGCACAAAGCACAAGTCTGGACAGCT...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp AGAGAACGGGCTCTGTTCTCGGCTCGGGATCACCTCCCAAGTGTACAATATAAATCTGGAGAACAGGGCTaGCTCAGGAAAAGGGAGATA +
Preference number: 2 (lower is better)
Translates to: RERALFSARDHLPSVQYKSGEQG*LRKREI
Trigger: TATCTCCCTTTTCCTGAGCCAGCCCTGTTCTCCAGA...TTTATATTGTACACTTGGGAGGTGATCCCGAGCCGAGAACAGAGCCCGTTCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp GGTTGCTATGAGTTGGAGGCTAACCTGGGTTATATAGCAAGTACCAGACTGGCTCCTCAGCAGAGAAATTaGAGCCCAGAAACAGCCCCA +
Preference number: 2 (lower is better)
Translates to: GCYELEANLGYIASTRLAPQQRN*SPETAP
Trigger: TGGGGCTGTTTCTGGGCTCCAATTTCTCTGCTGAGG...AGCCAGTCTGGTACTTGCTATATAACCCAGGTTAGCCTCCAACTCATAGCAACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp AGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCTCAATGCTTCTCAAGCTTCAGAAACTaGGACAAGTCTGAGGTGATG +
Preference number: 2 (lower is better)
Translates to: RSPKDCWSPPPHHTPQCFSSFRN*DKSEVM
Trigger: CATCACCTCAGACTTGTCCCAGTTTCTGAAGCTTGA...GAAGCATTGAGGTGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGTCAAGCTTCAGAAACTaGGACAAGTCTGAGGTGATG +
Preference number: 2 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRSSFRN*DKSEVM
Trigger: CATCACCTCAGACTTGTCCCAGTTTCTGAAGCTTGA...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CAA 90 bp AAAGCTCTTAGAAATAGCTCTGGTCAGAGCAGAAGCTGTCCAGACTaGTGCTTTGTGCAAATTGCAAGGGAGCTCTCACCACTGGGTCCA +
Preference number: 2 (lower is better)
Translates to: KALRNSSGQSRSCPD*CFVQIARELSPLGP
Trigger: TGGACCCAGTGGTGAGAGCTCCCTTGCAATTTGCACAAAGCACAAGTCTGGACAGCTTCTGCTCTGACCAGAGCTATTTCTAAGAGCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR TCA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAAAGGTCATACATTACTGCCTTaGTCCTTCAGGGAGAATTTA +
Preference number: 2 (lower is better)
Translates to: TRLASNSEIRLASAGIKGHTLLP*SFRENL
Trigger: TAAATTCTCCCTGAAGGATCAAGGCAGTAATGTATG...ACCTTTAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR GCA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAAAGGTGGTGAAGGTTTCACCTaGATTATTCAAGCTTCAGAA +
Preference number: 2 (lower is better)
Translates to: TRLASNSEIRLASAGIKGGEGFT*IIQASE
Trigger: TTCTGAAGCTTGAATAATGCAGGTGAAACCTTCACC...ACCTTTAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR GCA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACTGCACACAGGGTGACTaGAGCCAGGAAGAGGGGCTC +
Preference number: 2 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNCTQGD*SQEEGL
Trigger: GAGCCCCTCTTCCTGGCTGCAGTCACCCTGTGTGCA...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAATCCTATGTATGTTGTaGGAGAAGGATGACAGAAGT +
Preference number: 2 (lower is better)
Translates to: CRPGWPRTQKSAWQVLGLILCML*EKDDRS
Trigger: ACTTCTGTCATCCTTCTCCCACAACATACATAGGAT...TAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACAGCAGCCCAAAGGAAATaGAATTCCCTGGTTTTATTC +
Preference number: 2 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTAAQRK*NSLVLF
Trigger: GAATAAAACCAGGGAATTCCATTTCCTTTGGGCTGC...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp AGAGAACGGGCTCTGTTCTCGGCTCGGGATCACCTCCCAAGTGTACAATATAAAACTCAGAAATCCGCCTaGCAAGTGCTGGGATTAAAG +
Preference number: 2 (lower is better)
Translates to: RERALFSARDHLPSVQYKTQKSA*QVLGLK
Trigger: CTTTAATCCCAGCACTTGCCAGGCGGATTTCTGAGT...TTTATATTGTACACTTGGGAGGTGATCCCGAGCCGAGAACAGAGCCCGTTCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp AGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCTCAATGCTTCCTGGTCTATGGATTTTaGAAAGCTATGGAGAGGGAA +
Preference number: 2 (lower is better)
Translates to: RSPKDCWSPPPHHTPQCFLVYGF*KAMERE
Trigger: TTCCCTCTCCATAGCTTTCCAAAATCCATAGACCAG...GAAGCATTGAGGTGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR TCA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGCATACATTACTGCCTTaGTCCTTCAGGGAGAATTTA +
Preference number: 2 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRHTLLP*SFRENL
Trigger: TAAATTCTCCCTGAAGGATCAAGGCAGTAATGTATG...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR GCA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACACCCCTCTCTGCACTTaGCCCATCAACACAGGGGCT +
Preference number: 2 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNTPLCT*PINTGA
Trigger: AGCCCCTGTGTTGATGGGGCAAGTGCAGAGAGGGGT...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR GCA 90 bp ATTTTGGAAAGCTATGGAGAGGGAAGGTACTTCTATTTTAAGGCACAGCATGGAACCCCTCTCTGCACTTaGCCCATCAACACAGGGGCT +
Preference number: 2 (lower is better)
Translates to: ILESYGEGRYFYFKAQHGTPLCT*PINTGA
Trigger: AGCCCCTGTGTTGATGGGGCAAGTGCAGAGAGGGGT...TCCATGCTGTGCCTTAAAATAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR GCA 90 bp AGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCTCAATGCTTCGAAAGAAAAATAAAGTaGCTGGAACCTTGGACATGG +
Preference number: 2 (lower is better)
Translates to: RSPKDCWSPPPHHTPQCFERKIK*LEPWTW
Trigger: CCATGTCCAAGGTTCCAGGCACTTTATTTTTCTTTC...GAAGCATTGAGGTGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCCCTAAAACTAGAATaGATGGCAGATGAGTATCTA +
Preference number: 2 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTPLKLE*MADEYL
Trigger: TAGATACTCATCTGCCATCCATTCTAGTTTTAGGGG...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp AGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCTCAATGCTTCATCCTATGTATGTTGTaGGAGAAGGATGACAGAAGT +
Preference number: 2 (lower is better)
Translates to: RSPKDCWSPPPHHTPQCFILCML*EKDDRS
Trigger: ACTTCTGTCATCCTTCTCCCACAACATACATAGGAT...GAAGCATTGAGGTGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGATCCTATGTATGTTGTaGGAGAAGGATGACAGAAGT +
Preference number: 2 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRILCML*EKDDRS
Trigger: ACTTCTGTCATCCTTCTCCCACAACATACATAGGAT...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp AGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCTCAATGCTTCGATTTTGGAAAGCTATaGAGAGGGAAGGTACTTCTA +
Preference number: 2 (lower is better)
Translates to: RSPKDCWSPPPHHTPQCFDFGKL*RGKVLL
Trigger: TAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAATC...GAAGCATTGAGGTGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR TCA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACATCCATAAAGAAGTCTTaGCTAGCTTTGTTACCAAAG +
Preference number: 2 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTSIKKS*LALLPK
Trigger: CTTTGGTAACAAAGCTAGTCAAGACTTCTTTATGGA...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR TCA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGTCCATAAAGAAGTCTTaGCTAGCTTTGTTACCAAAG +
Preference number: 2 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRSIKKS*LALLPK
Trigger: CTTTGGTAACAAAGCTAGTCAAGACTTCTTTATGGA...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR TCA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGAGACTTGGAAGTGAATaGCTTTCAAACTTTTTGAGG +
Preference number: 2 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRRLGSE*LSNFLR
Trigger: CCTCAAAAAGTTTGAAAGTCATTCACTTCCAAGTCT...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR TCA 90 bp AGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCTCAATGCTTCTGGCAGACTTGGAAGTaGATGACTTTCAAACTTTTT +
Preference number: 2 (lower is better)
Translates to: RSPKDCWSPPPHHTPQCFWQTWK*MTFKLF
Trigger: AAAAAGTTTGAAAGTCATTCACTTCCAAGTCTGCCA...GAAGCATTGAGGTGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR GCA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAAAGGTAGAAAACTGAAGGAGTaGTTAAAACTCACGAATCAA +
Preference number: 2 (lower is better)
Translates to: TRLASNSEIRLASAGIKGRKLKE*LKLTNQ
Trigger: TTGATTCGTGAGTTTTAAGCACTCCTTCAGTTTTCT...ACCTTTAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp ACTGGATGGAAAGGGGATAGAGAGGCAAGGAGCTGTGTCAGATTTTTCCATTTTTCTGGAGAACAGGGCTaGCTCAGGAAAAGGGAGATA +
Preference number: 2 (lower is better)
Translates to: TGWKGDREARSCVRFFHFSGEQG*LRKREI
Trigger: TATCTCCCTTTTCCTGAGCCAGCCCTGTTCTCCAGA...AAAATGGAAAAATCTGACACAGCTCCTTGCCTCTCTATCCCCTTTCCATCCAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAAAGGTGGAAATGGAATTCCCTaGTTTTATTCTACAGGAAAA +
Preference number: 2 (lower is better)
Translates to: TRLASNSEIRLASAGIKGGNGIP*FYSTGK
Trigger: TTTTCCTGTAGAATAAAACCAGGGAATTCCATTTCC...ACCTTTAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp AGAGAACGGGCTCTGTTCTCGGCTCGGGATCACCTCCCAAGTGTACAATATAAACTGGTCTATGGATTTTaGAAAGCTATGGAGAGGGAA +
Preference number: 2 (lower is better)
Translates to: RERALFSARDHLPSVQYKLVYGF*KAMERE
Trigger: TTCCCTCTCCATAGCTTTCCAAAATCCATAGACCAG...TTTATATTGTACACTTGGGAGGTGATCCCGAGCCGAGAACAGAGCCCGTTCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR TCA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACGTTGTGGGAGAAGGATaGCAGAAGTGCACACAGGGT +
Preference number: 2 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNVVGEG*QKCTQG
Trigger: ACCCTGTGTGCACTTCTGTCATCCTTCTCCCACAAC...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR TCA 90 bp ATTTTGGAAAGCTATGGAGAGGGAAGGTACTTCTATTTTAAGGCACAGCATGGAGTTGTGGGAGAAGGATaGCAGAAGTGCACACAGGGT +
Preference number: 2 (lower is better)
Translates to: ILESYGEGRYFYFKAQHGVVGEG*QKCTQG
Trigger: ACCCTGTGTGCACTTCTGTCATCCTTCTCCCACAAC...TCCATGCTGTGCCTTAAAATAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR GCA 90 bp ATTTTGGAAAGCTATGGAGAGGGAAGGTACTTCTATTTTAAGGCACAGCATGGACTGAGGCAGGAGGGTTaGTATGAGTTGGAGGCTAAC +
Preference number: 2 (lower is better)
Translates to: ILESYGEGRYFYFKAQHGLRQEG*YELEAN
Trigger: GTTAGCCTCCAACTCATAGCAACCCTCCTGCCTCAG...TCCATGCTGTGCCTTAAAATAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR GCA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACGGATGGTACAGAGGATaGAGGGTGGAGAGAGTGGAA +
Preference number: 2 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNGWYRG*RVERVE
Trigger: TTCCACTCTCTCCACCCTGCATCCTCTGTACCATCC...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR TCA 90 bp CTTGCTTATTCTGAACAAGTTGATCTTTGTTTTGTTTCCCAGACGTTCCTTAACCAGCACTCAGAAGACTaGGGCAGGAGGGTTGCTATG +
Preference number: 2 (lower is better)
Translates to: LAYSEQVDLCFVSQTFLNQHSED*GRRVAM
Trigger: CATAGCAACCCTCCTGCCTCAGTCTTCTGAGTGCTG...GTTAAGGAACGTCTGGGAAACAAAACAAAGATCAACTTGTTCAGAATAAGCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR GCA 90 bp ACTGGATGGAAAGGGGATAGAGAGGCAAGGAGCTGTGTCAGATTTTTCCATTTTAGCTGTCCAGACTTGTaGTTTGTGCAAATTGCAAGG +
Preference number: 2 (lower is better)
Translates to: TGWKGDREARSCVRFFHFSCPDL*FVQIAR
Trigger: CCTTGCAATTTGCACAAAGCACAAGTCTGGACAGCT...AAAATGGAAAAATCTGACACAGCTCCTTGCCTCTCTATCCCCTTTCCATCCAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp GGTTGCTATGAGTTGGAGGCTAACCTGGGTTATATAGCAAGTACCAGACTGGCTCCCCTAAAACTAGAATaGATGGCAGATGAGTATCTA +
Preference number: 2 (lower is better)
Translates to: GCYELEANLGYIASTRLAPLKLE*MADEYL
Trigger: TAGATACTCATCTGCCATCCATTCTAGTTTTAGGGG...AGCCAGTCTGGTACTTGCTATATAACCCAGGTTAGCCTCCAACTCATAGCAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp ATTTTGGAAAGCTATGGAGAGGGAAGGTACTTCTATTTTAAGGCACAGCATGGATCTGGAGAACAGGGCTaGCTCAGGAAAAGGGAGATA +
Preference number: 2 (lower is better)
Translates to: ILESYGEGRYFYFKAQHGSGEQG*LRKREI
Trigger: TATCTCCCTTTTCCTGAGCCAGCCCTGTTCTCCAGA...TCCATGCTGTGCCTTAAAATAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACGTAGAAAGCTGGGTGTaGTGGTTCATGCCTAGGTAT +
Preference number: 2 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNVESWV*WFMPRY
Trigger: ATACCTAGGCATGAACCACCACACCCAGCTTTCTAC...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp CTTGCTTATTCTGAACAAGTTGATCTTTGTTTTGTTTCCCAGACGTTCCTTAACCAGCCTGTAGAAAGCTaGGTGTGGTGGTTCATGCCT +
Preference number: 2 (lower is better)
Translates to: LAYSEQVDLCFVSQTFLNQPVES*VWWFMP
Trigger: AGGCATGAACCACCACACCCAGCTTTCTACAGGCTG...GTTAAGGAACGTCTGGGAAACAAAACAAAGATCAACTTGTTCAGAATAAGCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR TCA 90 bp CTTGCTTATTCTGAACAAGTTGATCTTTGTTTTGTTTCCCAGACGTTCCTTAACAAACTGGGACAAGTCTaGGGTGATGCTAGCAAGGCA +
Preference number: 2 (lower is better)
Translates to: LAYSEQVDLCFVSQTFLNKLGQV*GDASKA
Trigger: TGCCTTGCTAGCATCACCTCAGACTTGTCCCAGTTT...GTTAAGGAACGTCTGGGAAACAAAACAAAGATCAACTTGTTCAGAATAAGCAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CAA 90 bp TTCCATAAAGAAGTCTTGACTAGCTTTGTTACCAAAGAGAGGTGTTaGATCATTTTTCTGACTAGGCAGAGGAAACATGCACTGGAGTCC +
Preference number: 2 (lower is better)
Translates to: FHKEVLTSFVTKERC*IIFLTRQRKHALES
Trigger: GGACTCCAGTGCATGTTTCCTCTGCCTAGTCAGAAAAATGATCAAACACCTCTCTTTGGTAACAAAGCTAGTCAAGACTTCTTTATGGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR TCA 90 bp ACTGGATGGAAAGGGGATAGAGAGGCAAGGAGCTGTGTCAGATTTTTCCATTTTTGGCAGACTTGGAAGTaGATGACTTTCAAACTTTTT +
Preference number: 2 (lower is better)
Translates to: TGWKGDREARSCVRFFHFWQTWK*MTFKLF
Trigger: AAAAAGTTTGAAAGTCATTCACTTCCAAGTCTGCCA...AAAATGGAAAAATCTGACACAGCTCCTTGCCTCTCTATCCCCTTTCCATCCAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp CTTGCTTATTCTGAACAAGTTGATCTTTGTTTTGTTTCCCAGACGTTCCTTAACGTAGAAAGCTGGGTGTaGTGGTTCATGCCTAGGTAT +
Preference number: 2 (lower is better)
Translates to: LAYSEQVDLCFVSQTFLNVESWV*WFMPRY
Trigger: ATACCTAGGCATGAACCACCACACCCAGCTTTCTAC...GTTAAGGAACGTCTGGGAAACAAAACAAAGATCAACTTGTTCAGAATAAGCAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp ACTGGATGGAAAGGGGATAGAGAGGCAAGGAGCTGTGTCAGATTTTTCCATTTTTGCTTTACTGGTCTATaGATTTTGGAAAGCTATGGA +
Preference number: 2 (lower is better)
Translates to: TGWKGDREARSCVRFFHFCFTGL*ILESYG
Trigger: TCCATAGCTTTCCAAAATCCATAGACCAGTAAAGCA...AAAATGGAAAAATCTGACACAGCTCCTTGCCTCTCTATCCCCTTTCCATCCAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR TCA 90 bp ATTTTGGAAAGCTATGGAGAGGGAAGGTACTTCTATTTTAAGGCACAGCATGGACATACATTACTGCCTTaGTCCTTCAGGGAGAATTTA +
Preference number: 2 (lower is better)
Translates to: ILESYGEGRYFYFKAQHGHTLLP*SFRENL
Trigger: TAAATTCTCCCTGAAGGATCAAGGCAGTAATGTATG...TCCATGCTGTGCCTTAAAATAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR GCA 90 bp ACTGGATGGAAAGGGGATAGAGAGGCAAGGAGCTGTGTCAGATTTTTCCATTTTAGAAAACTGAAGGAGTaGTTAAAACTCACGAATCAA +
Preference number: 2 (lower is better)
Translates to: TGWKGDREARSCVRFFHFRKLKE*LKLTNQ
Trigger: TTGATTCGTGAGTTTTAAGCACTCCTTCAGTTTTCT...AAAATGGAAAAATCTGACACAGCTCCTTGCCTCTCTATCCCCTTTCCATCCAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR GCA 90 bp ATTTTGGAAAGCTATGGAGAGGGAAGGTACTTCTATTTTAAGGCACAGCATGGAGGTGAAGGTTTCACCTaGATTATTCAAGCTTCAGAA +
Preference number: 2 (lower is better)
Translates to: ILESYGEGRYFYFKAQHGGEGFT*IIQASE
Trigger: TTCTGAAGCTTGAATAATGCAGGTGAAACCTTCACC...TCCATGCTGTGCCTTAAAATAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR GCA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACGAAAGAAAAATAAAGTaGCTGGAACCTTGGACATGG +
Preference number: 2 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNERKIK*LEPWTW
Trigger: CCATGTCCAAGGTTCCAGGCACTTTATTTTTCTTTC...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp ACTGGATGGAAAGGGGATAGAGAGGCAAGGAGCTGTGTCAGATTTTTCCATTTTGGAAATGGAATTCCCTaGTTTTATTCTACAGGAAAA +
Preference number: 2 (lower is better)
Translates to: TGWKGDREARSCVRFFHFGNGIP*FYSTGK
Trigger: TTTTCCTGTAGAATAAAACCAGGGAATTCCATTTCC...AAAATGGAAAAATCTGACACAGCTCCTTGCCTCTCTATCCCCTTTCCATCCAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp ACTGGATGGAAAGGGGATAGAGAGGCAAGGAGCTGTGTCAGATTTTTCCATTTTCACAGGAATTGTACATaGAAGCATGATAGTATTTTG +
Preference number: 2 (lower is better)
Translates to: TGWKGDREARSCVRFFHFHRNCT*KHDSIL
Trigger: CAAAATACTATCATGCTTCCATGTACAATTCCTGTG...AAAATGGAAAAATCTGACACAGCTCCTTGCCTCTCTATCCCCTTTCCATCCAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp CTTGCTTATTCTGAACAAGTTGATCTTTGTTTTGTTTCCCAGACGTTCCTTAACGCAGCCCAAAGGAAATaGAATTCCCTGGTTTTATTC +
Preference number: 2 (lower is better)
Translates to: LAYSEQVDLCFVSQTFLNAAQRK*NSLVLF
Trigger: GAATAAAACCAGGGAATTCCATTTCCTTTGGGCTGC...GTTAAGGAACGTCTGGGAAACAAAACAAAGATCAACTTGTTCAGAATAAGCAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR GCA 90 bp ATTTTGGAAAGCTATGGAGAGGGAAGGTACTTCTATTTTAAGGCACAGCATGGAAGAAAACTGAAGGAGTaGTTAAAACTCACGAATCAA +
Preference number: 2 (lower is better)
Translates to: ILESYGEGRYFYFKAQHGRKLKE*LKLTNQ
Trigger: TTGATTCGTGAGTTTTAAGCACTCCTTCAGTTTTCT...TCCATGCTGTGCCTTAAAATAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACTCATTTCTGCTTTACTaGTCTATGGATTTTGGAAAG +
Preference number: 2 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNSFLLY*SMDFGK
Trigger: CTTTCCAAAATCCATAGACCAGTAAAGCAGAAATGA...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CCA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACACAATAACTTGTGACTaGGTATCCACAAGATATTCA +
Preference number: 2 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNTITCD*VSTRYS
Trigger: TGAATATCTTGTGGATACCCAGTCACAAGTTATTGT...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR TCA 90 bp CTTGCTTATTCTGAACAAGTTGATCTTTGTTTTGTTTCCCAGACGTTCCTTAACAGACTTGGAAGTGAATaGCTTTCAAACTTTTTGAGG +
Preference number: 2 (lower is better)
Translates to: LAYSEQVDLCFVSQTFLNRLGSE*LSNFLR
Trigger: CCTCAAAAAGTTTGAAAGTCATTCACTTCCAAGTCT...GTTAAGGAACGTCTGGGAAACAAAACAAAGATCAACTTGTTCAGAATAAGCAAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CAA 90 bp TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTACCCCTGCTGGGCTGTTaGCATTCCCACCCAGGCAGG +
Preference number: 3 (lower is better)
Translates to: CRPGWPRTQKSAWQVLGLPLLGC*HSHPGR
Trigger: CCTGCCTGGGTGGGAATGCAAACAGCCCAGCAGGGG...TAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CAA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGCCCCTGCTGGGCTGTTaGCATTCCCACCCAGGCAGG +
Preference number: 3 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRPLLGC*HSHPGR
Trigger: CCTGCCTGGGTGGGAATGCAAACAGCCCAGCAGGGG...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CCA 72 bp CACTGGGTCCAGCCCTACCCCTCTGGAGAACAGGGCTaGCTCAGGAAAAGGGAGATATCCAAAGGCAGGTCA +
Preference number: 3 (lower is better)
Translates to: HWVQPYPSGEQG*LRKREISKGRS
Trigger: TGACCTGCCTTTGGATATCTCCCTTTTCCTGAGCCAGCCCTGTTCTCCAGAGGGGTAGGGCTGGACCCAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CCA 72 bp TGTGCTTTGTGCAAATTGCAAGGGAGCTCTCACCACTaGGTCCAGCCCTACCCCTCTGGAGAACAGGGCTGG +
Preference number: 3 (lower is better)
Translates to: CALCKLQGSSHH*VQPYPSGEQGW
Trigger: CCAGCCCTGTTCTCCAGAGGGGTAGGGCTGGACCCAGTGGTGAGAGCTCCCTTGCAATTTGCACAAAGCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CAA 90 bp GGTGACTGCAGCCAGGAAGAGGGGCTCACGGTGAAGGTTTCACCTGCATTATTCACCTCAGCAGAGAAATaGGAGCCCAGAAACAGCCCC +
Preference number: 3 (lower is better)
Translates to: GDCSQEEGLTVKVSPALFTSAEK*EPRNSP
Trigger: GGGGCTGTTTCTGGGCTCCAATTTCTCTGCTGAGGT...GAATAATGCAGGTGAAACCTTCACCGTGAGCCCCTCTTCCTGGCTGCAGTCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CCA 72 bp GGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATaGTACAGAGGATGCAGGGTGGAGAGAGTGGAAAGG +
Preference number: 3 (lower is better)
Translates to: GQPSGVLALSWG*YRGCRVERVER
Trigger: CCTTTCCACTCTCTCCACCCTGCATCCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR GCA 72 bp GGAGATATCCAAAGGCAGGTCAGATCACTGGGACCGTaGGGCCCATGGCGACAGCTCACTAAAATAGAGTTC +
Preference number: 3 (lower is better)
Translates to: GDIQRQVRSLGP*GPWRQLTKIEF
Trigger: GAACTCTATTTTAGTGAGCTGTCGCCATGGGCCGCACGGTCCCAGTGATCTGACCTGCCTTTGGATATCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CCA 72 bp CCTAGTATTTCCCTACTTTCCCTTGGGCCCTGGGATTaGGACAGAAGAGGTTATGAGCTTCCCCCTTCTGCC +
Preference number: 3 (lower is better)
Translates to: PSISLLSLGPWD*DRRGYELPPSA
Trigger: GGCAGAAGGGGGAAGCTCATAACCTCTTCTGTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CCA 72 bp AGGAAAAGGGAGATATCCAAAGGCAGGTCAGATCACTaGGACCGTGCGGCCCATGGCGACAGCTCACTAAAA +
Preference number: 3 (lower is better)
Translates to: RKREISKGRSDH*DRAAHGDSSLK
Trigger: TTTTAGTGAGCTGTCGCCATGGGCCGCACGGTCCCAGTGATCTGACCTGCCTTTGGATATCTCCCTTTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CCA 72 bp TTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTaGGGATGGTACAGAGGATGCAGGGTGGAGAGAGTG +
Preference number: 3 (lower is better)
Translates to: FGGQPSGVLALS*GWYRGCRVERV
Trigger: CACTCTCTCCACCCTGCATCCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CAA 90 bp GGTGACTGCAGCCAGGAAGAGGGGCTCACGGTGAAGGTTTCACCTGCATTATTCCTTCCCCCTTCTGCCTaGAAGTCTCAAGTCAACTGT +
Preference number: 3 (lower is better)
Translates to: GDCSQEEGLTVKVSPALFLPPSA*KSQVNC
Trigger: ACAGTTGACTTGAGACTTCAAGGCAGAAGGGGGAAG...GAATAATGCAGGTGAAACCTTCACCGTGAGCCCCTCTTCCTGGCTGCAGTCACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CAA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAAAGGTGTCCAGACTTGTGCTTaGTGCAAATTGCAAGGGAGC +
Preference number: 3 (lower is better)
Translates to: TRLASNSEIRLASAGIKGVQTCA*CKLQGS
Trigger: GCTCCCTTGCAATTTGCACAAAGCACAAGTCTGGAC...ACCTTTAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CAA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACAAAGGAGAAGGGACAATaGGCGCAGGATAGCCTTCAG +
Preference number: 3 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTKEKGQ*AQDSLQ
Trigger: CTGAAGGCTATCCTGCGCCAATTGTCCCTTCTCCTT...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR TCA 72 bp TTCCCTTGGGCCCTGGGATTGGGACAGAAGAGGTTATaGGCTTCCCCCTTCTGCCTTGAAGTCTCAAGTCAA +
Preference number: 3 (lower is better)
Translates to: FPWALGLGQKRL*ASPFCLEVSSQ
Trigger: TTGACTTGAGACTTCAAGGCAGAAGGGGGAAGCTCATAACCTCTTCTGTCCCAATCCCAGGGCCCAAGGGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR TCA 72 bp TGGTGGTTCATGCCTAGGTATCAGCACTCAGAAGACTaGGGCAGGAGGGTTGCTATGAGTTGGAGGCTAACC +
Preference number: 3 (lower is better)
Translates to: WWFMPRYQHSED*GRRVAMSWRLT
Trigger: GGTTAGCCTCCAACTCATAGCAACCCTCCTGCCTCAGTCTTCTGAGTGCTGATACCTAGGCATGAACCACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR TCA 72 bp GCAGGTAGGCATCCTATGTATGTTGTGGGAGAAGGATaGCAGAAGTGCACACAGGGTGACTGCAGCCAGGAA +
Preference number: 3 (lower is better)
Translates to: AGRHPMYVVGEG*QKCTQGDCSQE
Trigger: TTCCTGGCTGCAGTCACCCTGTGTGCACTTCTGTCATCCTTCTCCCACAACATACATAGGATGCCTACCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CCA 72 bp CACACACCTAGTATTTCCCTACTTTCCCTTGGGCCCTaGGATTGGGACAGAAGAGGTTATGAGCTTCCCCCT +
Preference number: 3 (lower is better)
Translates to: HTPSISLLSLGP*DWDRRGYELPP
Trigger: AGGGGGAAGCTCATAACCTCTTCTGTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CCA 72 bp TTCCCACCCAGGCAGGTAGGCATCCTATGTATGTTGTaGGAGAAGGATGACAGAAGTGCACACAGGGTGACT +
Preference number: 3 (lower is better)
Translates to: FPPRQVGILCML*EKDDRSAHRVT
Trigger: AGTCACCCTGTGTGCACTTCTGTCATCCTTCTCCCACAACATACATAGGATGCCTACCTGCCTGGGTGGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CAA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACATGTGCTTTGTGCAAATaGCAAGGGAGCTCTCACCAC +
Preference number: 3 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTCALCK*QGSSHH
Trigger: GTGGTGAGAGCTCCCTTGCAATTTGCACAAAGCACA...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CAA 90 bp AGAGAACGGGCTCTGTTCTCGGCTCGGGATCACCTCCCAAGTGTACAATATAAAACCTCAGCAGAGAAATaGGAGCCCAGAAACAGCCCC +
Preference number: 3 (lower is better)
Translates to: RERALFSARDHLPSVQYKTSAEK*EPRNSP
Trigger: GGGGCTGTTTCTGGGCTCCAATTTCTCTGCTGAGGT...TTTATATTGTACACTTGGGAGGTGATCCCGAGCCGAGAACAGAGCCCGTTCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CAA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGGAGGGTTGCTATGAGTaGGAGGCTAACCTGGGTTAT +
Preference number: 3 (lower is better)
Translates to: VWRSALWCTGFKLGMVQREGCYE*EANLGY
Trigger: ATAACCCAGGTTAGCCTCCAACTCATAGCAACCCTC...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CAA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACTGGGTACTGCCTCTTaGAAAAAGAGGACACAGTCC +
Preference number: 3 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTLGTAS*KKRTQS
Trigger: GGACTGTGTCCTCTTTTTCAAAGAGGCAGTACCCAG...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CAA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAAAGGTAGAAGCTGTCCAGACTaGTGCTTTGTGCAAATTGCA +
Preference number: 3 (lower is better)
Translates to: TRLASNSEIRLASAGIKGRSCPD*CFVQIA
Trigger: TGCAATTTGCACAAAGCACAAGTCTGGACAGCTTCT...ACCTTTAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CAA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGGGCATCCTATGTATGTaGTGGGAGAAGGATGACAGA +
Preference number: 3 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRGILCM*WEKDDR
Trigger: TCTGTCATCCTTCTCCCACAACATACATAGGATGCC...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR GCA 72 bp CAGCCAGGAAGAGGGGCTCACGGTGAAGGTTTCACCTaGATTATTCAAGCTTCAGAAACTGGGACAAGTCTG +
Preference number: 3 (lower is better)
Translates to: QPGRGAHGEGFT*IIQASETGTSL
Trigger: CAGACTTGTCCCAGTTTCTGAAGCTTGAATAATGCAGGTGAAACCTTCACCGTGAGCCCCTCTTCCTGGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR GCA 72 bp AAACACAGAAAGAGGCCAAGGTCCTTCCCACCCCACTaGTTAGACAGCTTCTATCACTTCCTCTACCCCCAA +
Preference number: 3 (lower is better)
Translates to: KHRKRPRSFPPH*LDSFYHFLYPQ
Trigger: TTGGGGGTAGAGGAAGTGATAGAAGCTGTCTAAGCAGTGGGGTGGGAAGGACCTTGGCCTCTTTCTGTGTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CCA 72 bp CCATTAGTGGGTGATGACATACCTCAGCAGAGAAATTaGAGCCCAGAAACAGCCCCAGGTAACTCTGGACAC +
Preference number: 3 (lower is better)
Translates to: PLVGDDIPQQRN*SPETAPGNSGH
Trigger: GTGTCCAGAGTTACCTGGGGCTGTTTCTGGGCTCCAATTTCTCTGCTGAGGTATGTCATCACCCACTAATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CAA 90 bp AGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCTCAATGCTTCAGAAGCTGTCCAGACTaGTGCTTTGTGCAAATTGCA +
Preference number: 3 (lower is better)
Translates to: RSPKDCWSPPPHHTPQCFRSCPD*CFVQIA
Trigger: TGCAATTTGCACAAAGCACAAGTCTGGACAGCTTCT...GAAGCATTGAGGTGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CAA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAAAGGTAGTATCTGCATGGGCTaGCTTATTCTGAACAAGTTG +
Preference number: 3 (lower is better)
Translates to: TRLASNSEIRLASAGIKGSICMG*LILNKL
Trigger: CAACTTGTTCAGAATAAGCAAGCCCATGCAGATACT...ACCTTTAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR GCA 72 bp TTCTGTCCTCTTGCCTATGGCTATGTGGCTGGGTACTaGCTCTTTGAAAAAGAGGACACAGTCCAGTCAGAG +
Preference number: 3 (lower is better)
Translates to: FCPLAYGYVAGY*LFEKEDTVQSE
Trigger: CTCTGACTGGACTGTGTCCTCTTTTTCAAAGAGGCAGTACCCAGCCACATAGCCATAGGCAAGAGGACAGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CAA 90 bp AGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCTCAATGCTTCTCACCCCTTCTTCATTaGCATCCACAAATGAACACA +
Preference number: 3 (lower is better)
Translates to: RSPKDCWSPPPHHTPQCFSPLLH*HPQMNT
Trigger: TGTGTTCATTTGTGGATGCAAATGAAGAAGGGGTGA...GAAGCATTGAGGTGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CAA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACATCACCCCTTCTTCATTaGCATCCACAAATGAACACA +
Preference number: 3 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTSPLLH*HPQMNT
Trigger: TGTGTTCATTTGTGGATGCAAATGAAGAAGGGGTGA...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CAA 90 bp AGAGAACGGGCTCTGTTCTCGGCTCGGGATCACCTCCCAAGTGTACAATATAAAGGCATCCTATGTATGTaGTGGGAGAAGGATGACAGA +
Preference number: 3 (lower is better)
Translates to: RERALFSARDHLPSVQYKGILCM*WEKDDR
Trigger: TCTGTCATCCTTCTCCCACAACATACATAGGATGCC...TTTATATTGTACACTTGGGAGGTGATCCCGAGCCGAGAACAGAGCCCGTTCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CAA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGAGTATCTGCATGGGCTaGCTTATTCTGAACAAGTTG +
Preference number: 3 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRSICMG*LILNKL
Trigger: CAACTTGTTCAGAATAAGCAAGCCCATGCAGATACT...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR TCA 72 bp CCTGCATTATTCAAGCTTCAGAAACTGGGACAAGTCTaGGGTGATGCTAGCAAGGCACGAGGCATTCACCTA +
Preference number: 3 (lower is better)
Translates to: PALFKLQKLGQV*GDASKARGIHL
Trigger: TAGGTGAATGCCTCGTGCCTTGCTAGCATCACCTCAGACTTGTCCCAGTTTCTGAAGCTTGAATAATGCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CCA 72 bp TCTCATACTAGGTTTCAGCCTGTAGAAAGCTGGGTGTaGTGGTTCATGCCTAGGTATCAGCACTCAGAAGAC +
Preference number: 3 (lower is better)
Translates to: SHTRFQPVESWV*WFMPRYQHSED
Trigger: GTCTTCTGAGTGCTGATACCTAGGCATGAACCACCACACCCAGCTTTCTACAGGCTGAAACCTAGTATGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CAA 90 bp GGTGACTGCAGCCAGGAAGAGGGGCTCACGGTGAAGGTTTCACCTGCATTATTCTTTTCCTTAACTGACTaGAGAACTTTCTTTCCAGGT +
Preference number: 3 (lower is better)
Translates to: GDCSQEEGLTVKVSPALFFSLTD*RTFFPG
Trigger: ACCTGGAAAGAAAGTTCTCAAGTCAGTTAAGGAAAA...GAATAATGCAGGTGAAACCTTCACCGTGAGCCCCTCTTCCTGGCTGCAGTCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CAA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAAAGGTAAGTTGATCTTTGTTTaGTTTCCCAGACGTTCCTTA +
Preference number: 3 (lower is better)
Translates to: TRLASNSEIRLASAGIKGKLIFV*FPRRSL
Trigger: TAAGGAACGTCTGGGAAACAAAACAAAGATCAACTT...ACCTTTAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CAA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACTGTTCTTTAATATCTaGAGGTATGGGAACAGCAGA +
Preference number: 3 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTLFFNI*RYGNSR
Trigger: TCTGCTGTTCCCATACCTCAAGATATTAAAGAACAG...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CAA 90 bp ACTGGATGGAAAGGGGATAGAGAGGCAAGGAGCTGTGTCAGATTTTTCCATTTTCTTCCCCCTTCTGCCTaGAAGTCTCAAGTCAACTGT +
Preference number: 3 (lower is better)
Translates to: TGWKGDREARSCVRFFHFLPPSA*KSQVNC
Trigger: ACAGTTGACTTGAGACTTCAAGGCAGAAGGGGGAAG...AAAATGGAAAAATCTGACACAGCTCCTTGCCTCTCTATCCCCTTTCCATCCAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CAA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACATTTTCCTTAACTGACTaGAGAACTTTCTTTCCAGGT +
Preference number: 3 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTFSLTD*RTFFPG
Trigger: ACCTGGAAAGAAAGTTCTCAAGTCAGTTAAGGAAAA...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CCA 72 bp TGCTTATCTCATACTAGGTTTCAGCCTGTAGAAAGCTaGGTGTGGTGGTTCATGCCTAGGTATCAGCACTCA +
Preference number: 3 (lower is better)
Translates to: CLSHTRFQPVES*VWWFMPRYQHS
Trigger: TGAGTGCTGATACCTAGGCATGAACCACCACACCCAGCTTTCTACAGGCTGAAACCTAGTATGAGATAAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CCA 72 bp TGGTCACCACCACCCCACCACACACCTCAATGCTTCTaGAATAAAGTATGTAGTAAGGAACAGCTTAGGAAC +
Preference number: 3 (lower is better)
Translates to: WSPPPHHTPQCF*NKVCSKEQLRN
Trigger: GTTCCTAAGCTGTTCCTTACTACATACTTTATTCCAGAAGCATTGAGGTGTGTGGTGGGGTGGTGGTGACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CAA 90 bp ACTGGATGGAAAGGGGATAGAGAGGCAAGGAGCTGTGTCAGATTTTTCCATTTTGGCATCCTATGTATGTaGTGGGAGAAGGATGACAGA +
Preference number: 3 (lower is better)
Translates to: TGWKGDREARSCVRFFHFGILCM*WEKDDR
Trigger: TCTGTCATCCTTCTCCCACAACATACATAGGATGCC...AAAATGGAAAAATCTGACACAGCTCCTTGCCTCTCTATCCCCTTTCCATCCAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CAA 90 bp ACTGGATGGAAAGGGGATAGAGAGGCAAGGAGCTGTGTCAGATTTTTCCATTTTTCTAATTCTGTCCTCTaGCCTATGGCTATGTGGCTG +
Preference number: 3 (lower is better)
Translates to: TGWKGDREARSCVRFFHFSNSVL*PMAMWL
Trigger: CAGCCACATAGCCATAGGCAAGAGGACAGAATTAGA...AAAATGGAAAAATCTGACACAGCTCCTTGCCTCTCTATCCCCTTTCCATCCAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CCA 72 bp CTTAAGCACAGGAGGCAATACACAATAACTTGTGACTaGGTATCCACAAGATATTCAGACACGAGTGCCTGT +
Preference number: 3 (lower is better)
Translates to: LKHRRQYTITCD*VSTRYSDTSAC
Trigger: ACAGGCACTCGTGTCTGAATATCTTGTGGATACCCAGTCACAAGTTATTGTGTATTGCCTCCTGTGCTTAAG
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CCA 72 bp AGACTGGAACAAACAGGTATGTACTTGCTAGCAAGCTaGTCTAGACGCCTGATTGTAGAAGTCCTAAAGACT +
Preference number: 3 (lower is better)
Translates to: RLEQTGMYLLAS*SRRLIVEVLKT
Trigger: AGTCTTTAGGACTTCTACAATCAGGCGTCTAGACCAGCTTGCTAGCAAGTACATACCTGTTTGTTCCAGTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CCA 72 bp ACACAGCAGCAGAGGATAGTGCTCTATAGAGGTTTTTaGTATTGTTTCAAACAGTCTAGCCAAACATCTGGG +
Preference number: 3 (lower is better)
Translates to: TQQQRIVLYRGF*YCFKQSSQTSG
Trigger: CCCAGATGTTTGGCTAGACTGTTTGAAACAATACCAAAAACCTCTATAGAGCACTATCCTCTGCTGCTGTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR GCA 72 bp ATTCACCTACCACTCACTGGGAGAAAACTGAAGGAGTaGTTAAAACTCACGAATCAAGATAAGTACTGTCTT +
Preference number: 3 (lower is better)
Translates to: IHLPLTGRKLKE*LKLTNQDKYCL
Trigger: AAGACAGTACTTATCTTGATTCGTGAGTTTTAAGCACTCCTTCAGTTTTCTCCCAGTGAGTGGTAGGTGAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR-3UTR CAA 90 bp ATTTTGGAAAGCTATGGAGAGGGAAGGTACTTCTATTTTAAGGCACAGCATGGAAAGTTGATCTTTGTTTaGTTTCCCAGACGTTCCTTA +
Preference number: 3 (lower is better)
Translates to: ILESYGEGRYFYFKAQHGKLIFV*FPRRSL
Trigger: TAAGGAACGTCTGGGAAACAAAACAAAGATCAACTT...TCCATGCTGTGCCTTAAAATAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp CACCCACACACACCTAGTATTTCCCTACTTTCCCTTGGGCCCTGGGATTGGGACCCAGCCCTCCAGGCTTaGGGCCCTTGCTGTGCATCA +
Preference number: 4 (lower is better)
Translates to: HPHTPSISLLSLGPWDWDPALQA*GPCCAS
Trigger: TGATGCACAGCAAGGGCCCCAAGCCTGGAGGGCTGG...GTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTGTGGGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTACCCACCGTCCGGCTCTaGCTTTTTGGCTGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: CRPGWPRTQKSAWQVLGLPTVRL*LFGWRR
Trigger: CCTCCTCCAGCCAAAAAGCCAGAGCCGGACGGTGGG...TAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp GGTGACTGCAGCCAGGAAGAGGGGCTCACGGTGAAGGTTTCACCTGCATTATTCGGGATGTTGTCCTGGTaGGGGTACGGTCGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: GDCSQEEGLTVKVSPALFGMLSW*GYGRPG
Trigger: TCCTGGGCGACCGTACCCCCACCAGGACAACATCCC...GAATAATGCAGGTGAAACCTTCACCGTGAGCCCCTCTTCCTGGCTGCAGTCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAAAGGTTGGGGGAAGTCCCCGTaGAGCTCCAGCCCATCCATC +
Preference number: 4 (lower is better)
Translates to: TRLASNSEIRLASAGIKGWGKSP*SSSPSI
Trigger: GATGGATGGGCTGGAGCTCCACGGGGACTTCCCCCA...ACCTTTAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp GGTGACTGCAGCCAGGAAGAGGGGCTCACGGTGAAGGTTTCACCTGCATTATTCGTGGGGGACTCAGGCTaGGCTAGGGGAGCTTGTGAA +
Preference number: 4 (lower is better)
Translates to: GDCSQEEGLTVKVSPALFVGDSG*ARGACE
Trigger: TTCACAAGCTCCCCTAGCTCAGCCTGAGTCCCCCAC...GAATAATGCAGGTGAAACCTTCACCGTGAGCCCCTCTTCCTGGCTGCAGTCACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp CACCCACACACACCTAGTATTTCCCTACTTTCCCTTGGGCCCTGGGATTGGGACTGGATCATCTCCTCCTaGTACTGGTGCCGGTGGCCC +
Preference number: 4 (lower is better)
Translates to: HPHTPSISLLSLGPWDWDWIISS*YWCRWP
Trigger: GGGCCACCGGCACCAGTATCAGGAGGAGATGATCCA...GTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTGTGGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp TGTTTCAAACAGTCTAGCCAAACATCTGGGCTCCTCCACCCCTTCTCAGGTGCAACCAGAGGGGATCGGTaGCACTGGCTGGCTGGAACC +
Preference number: 4 (lower is better)
Translates to: CFKQSSQTSGLLHPFSGATRGDR*HWLAGT
Trigger: GGTTCCAGCCAGCCAGTGTCACCGATCCCCTCTGGT...TGCACCTGAGAAGGGGTGGAGGAGCCCAGATGTTTGGCTAGACTGTTTGAAACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAAAGGTCCAGCGCCTTCTCAGTaGTTCCTTCTCCACCCCCTT +
Preference number: 4 (lower is better)
Translates to: TRLASNSEIRLASAGIKGPAPSQ*FLLHPL
Trigger: AAGGGGGTGGAGAAGGAAGCACTGAGAAGGCGCTGG...ACCTTTAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp GGTGACTGCAGCCAGGAAGAGGGGCTCACGGTGAAGGTTTCACCTGCATTATTCCCTCAGCATGGTGTCTaGCACGACCACTATGGGCCT +
Preference number: 4 (lower is better)
Translates to: GDCSQEEGLTVKVSPALFPQHGV*HDHYGP
Trigger: AGGCCCATAGTGGTCGTGGCAGACACCATGCTGAGG...GAATAATGCAGGTGAAACCTTCACCGTGAGCCCCTCTTCCTGGCTGCAGTCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACAGTCGAGAAGGGCGAGTaGGCTCTCTATCCGAACCCC +
Preference number: 4 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTVEKGE*ALYPNP
Trigger: GGGGTTCGGATAGAGAGCCCACTCGCCCTTCTCGAC...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp GGTGACTGCAGCCAGGAAGAGGGGCTCACGGTGAAGGTTTCACCTGCATTATTCCCATTGGAGGAGACATaGGAGCGGGCCAGGGAAACA +
Preference number: 4 (lower is better)
Translates to: GDCSQEEGLTVKVSPALFPLEET*ERARET
Trigger: TGTTTCCCTGGCCCGCTCCCATGTCTCCTCCAATGG...GAATAATGCAGGTGAAACCTTCACCGTGAGCCCCTCTTCCTGGCTGCAGTCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAAAGGTCCACTCCACCACCACTaGCTCCGTTGGAACCCAGAT +
Preference number: 4 (lower is better)
Translates to: TRLASNSEIRLASAGIKGPLHHH*LRWNPD
Trigger: ATCTGGGTTCCAACGGAGCCAGTGGTGGTGGAGTGG...ACCTTTAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTACCACTCCACCACCACTaGCTCCGTTGGAACCCAGAT +
Preference number: 4 (lower is better)
Translates to: CRPGWPRTQKSAWQVLGLPLHHH*LRWNPD
Trigger: ATCTGGGTTCCAACGGAGCCAGTGGTGGTGGAGTGG...TAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp TGTTTCAAACAGTCTAGCCAAACATCTGGGCTCCTCCACCCCTTCTCAGGTGCACCCACCGTCCGGCTCTaGCTTTTTGGCTGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: CFKQSSQTSGLLHPFSGAPTVRL*LFGWRR
Trigger: CCTCCTCCAGCCAAAAAGCCAGAGCCGGACGGTGGG...TGCACCTGAGAAGGGGTGGAGGAGCCCAGATGTTTGGCTAGACTGTTTGAAACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp TGTTTCAAACAGTCTAGCCAAACATCTGGGCTCCTCCACCCCTTCTCAGGTGCAGCCTGGCTCCAGAGCTaGGATGTTGTCCTGGTGGGG +
Preference number: 4 (lower is better)
Translates to: CFKQSSQTSGLLHPFSGAAWLQS*DVVLVG
Trigger: CCCCACCAGGACAACATCCCAGCTCTGGAGCCAGGC...TGCACCTGAGAAGGGGTGGAGGAGCCCAGATGTTTGGCTAGACTGTTTGAAACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp GGTGACTGCAGCCAGGAAGAGGGGCTCACGGTGAAGGTTTCACCTGCATTATTCTCAGCCACACGGAACTaGGGTGGTAACAAGGCACCC +
Preference number: 4 (lower is better)
Translates to: GDCSQEEGLTVKVSPALFSATRN*GGNKAP
Trigger: GGGTGCCTTGTTACCACCCCAGTTCCGTGTGGCTGA...GAATAATGCAGGTGAAACCTTCACCGTGAGCCCCTCTTCCTGGCTGCAGTCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp CACCCACACACACCTAGTATTTCCCTACTTTCCCTTGGGCCCTGGGATTGGGACTCAGCCACACGGAACTaGGGTGGTAACAAGGCACCC +
Preference number: 4 (lower is better)
Translates to: HPHTPSISLLSLGPWDWDSATRN*GGNKAP
Trigger: GGGTGCCTTGTTACCACCCCAGTTCCGTGTGGCTGA...GTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTGTGGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGGCATTTGGTCTGGGTTaGGGGAAGTCCCCGTGGAGC +
Preference number: 4 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRAFGLG*GKSPWS
Trigger: GCTCCACGGGGACTTCCCCCAACCCAGACCAAATGC...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp CACCCACACACACCTAGTATTTCCCTACTTTCCCTTGGGCCCTGGGATTGGGACCCACTATGGGCCTCTTaGGCACATGAGCAAGGACGA +
Preference number: 4 (lower is better)
Translates to: HPHTPSISLLSLGPWDWDPLWAS*AHEQGR
Trigger: TCGTCCTTGCTCATGTGCTCAAGAGGCCCATAGTGG...GTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTGTGGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp CCATCAACACAGGGGCTGGGTCCTGATGAGCCAGAGTTGAGCTTAACTTTCTTTACCAGAGGGGATCGGTaGCACTGGCTGGCTGGAACC +
Preference number: 4 (lower is better)
Translates to: PSTQGLGPDEPELSLTFFTRGDR*HWLAGT
Trigger: GGTTCCAGCCAGCCAGTGTCACCGATCCCCTCTGGT...AAAGAAAGTTAAGCTCAACTCTGGCTCATCAGGACCCAGCCCCTGTGTTGATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp GGTGACTGCAGCCAGGAAGAGGGGCTCACGGTGAAGGTTTCACCTGCATTATTCAACCGACTCCTTGTCTaGCTCCCCAGACTCAGGAGT +
Preference number: 4 (lower is better)
Translates to: GDCSQEEGLTVKVSPALFNRLLV*LPRLRS
Trigger: ACTCCTGAGTCTGGGGAGTCAGACAAGGAGTCGGTT...GAATAATGCAGGTGAAACCTTCACCGTGAGCCCCTCTTCCTGGCTGCAGTCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp CACCCACACACACCTAGTATTTCCCTACTTTCCCTTGGGCCCTGGGATTGGGACAACAAGGCACCCCTGTaGACTCCATCTTTGCCTGGC +
Preference number: 4 (lower is better)
Translates to: HPHTPSISLLSLGPWDWDNKAPL*TPSLPG
Trigger: GCCAGGCAAAGATGGAGTTCACAGGGGTGCCTTGTT...GTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTGTGGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp CACCCACACACACCTAGTATTTCCCTACTTTCCCTTGGGCCCTGGGATTGGGACAGGGGCAGCAGCTTGTaGTCTGAATCTGTGAGTGGG +
Preference number: 4 (lower is better)
Translates to: HPHTPSISLLSLGPWDWDRGSSL*SESVSG
Trigger: CCCACTCACAGATTCAGAGCACAAGCTGCTGCCCCT...GTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTGTGGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp CACCCACACACACCTAGTATTTCCCTACTTTCCCTTGGGCCCTGGGATTGGGACTGCCGAGAGAACTGCTaGCAACCGACTCCTTGTCTG +
Preference number: 4 (lower is better)
Translates to: HPHTPSISLLSLGPWDWDCRENC*QPTPCL
Trigger: CAGACAAGGAGTCGGTTGGCAGCAGTTCTCTCGGCA...GTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTGTGGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAAAGGTCAGCAGCCTCTTCCTTaGCACCCTTCCAGCTCTTCA +
Preference number: 4 (lower is better)
Translates to: TRLASNSEIRLASAGIKGQQPLP*HPSSSS
Trigger: TGAAGAGCTGGAAGGGTGGCAAGGAAGAGGCTGCTG...ACCTTTAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGACTTGCTCCCGCCATTaGCAACAGACTCAGACGGGG +
Preference number: 4 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRTCSRH*QQTQTG
Trigger: CCCCGTCTGAGTCTGTTGGCAATGGCGGGAGCAAGT...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACAACTTGCTCCCGCCATTaGCAACAGACTCAGACGGGG +
Preference number: 4 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTTCSRH*QQTQTG
Trigger: CCCCGTCTGAGTCTGTTGGCAATGGCGGGAGCAAGT...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp CACCCACACACACCTAGTATTTCCCTACTTTCCCTTGGGCCCTGGGATTGGGACCCTCCTGGCTATACTTaGTCCCGCCATTGCCAACAG +
Preference number: 4 (lower is better)
Translates to: HPHTPSISLLSLGPWDWDPPGYT*SRHCQQ
Trigger: CTGTTGGCAATGGCGGGAGCAAGTATAGCCAGGAGG...GTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTGTGGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp CACCCACACACACCTAGTATTTCCCTACTTTCCCTTGGGCCCTGGGATTGGGACGCCCTCCCCTTGCATTaGGATCCTCATAGTGCTCAG +
Preference number: 4 (lower is better)
Translates to: HPHTPSISLLSLGPWDWDALPLH*DPHSAQ
Trigger: CTGAGCACTATGAGGATCGCAATGCAAGGGGAGGGC...GTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTGTGGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCACTCCACCACCACTaGCTCCGTTGGAACCCAGAT +
Preference number: 4 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTPLHHH*LRWNPD
Trigger: ATCTGGGTTCCAACGGAGCCAGTGGTGGTGGAGTGG...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTACAGAGTCCCTCAGCATaGTGTCTGCCACGACCACTA +
Preference number: 4 (lower is better)
Translates to: CRPGWPRTQKSAWQVLGLQSPSA*CLPRPL
Trigger: TAGTGGTCGTGGCAGACACCATGCTGAGGGACTCTG...TAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp CACCCACACACACCTAGTATTTCCCTACTTTCCCTTGGGCCCTGGGATTGGGACATCGGTGACACTGGCTaGCTGGAACCTCCAATGGCA +
Preference number: 4 (lower is better)
Translates to: HPHTPSISLLSLGPWDWDIGDTG*LEPPMA
Trigger: TGCCATTGGAGGTTCCAGCCAGCCAGTGTCACCGAT...GTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTGTGGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp CACCCACACACACCTAGTATTTCCCTACTTTCCCTTGGGCCCTGGGATTGGGACACTCAGGAGTGGACCTaGGTTCATCTCCAGCTGAGG +
Preference number: 4 (lower is better)
Translates to: HPHTPSISLLSLGPWDWDTQEWT*VHLQLR
Trigger: CCTCAGCTGGAGATGAACCCAGGTCCACTCCTGAGT...GTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTGTGGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAACTCAGGAGTGGACCTaGGTTCATCTCCAGCTGAGG +
Preference number: 4 (lower is better)
Translates to: CRPGWPRTQKSAWQVLGLTQEWT*VHLQLR
Trigger: CCTCAGCTGGAGATGAACCCAGGTCCACTCCTGAGT...TAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp CCATCAACACAGGGGCTGGGTCCTGATGAGCCAGAGTTGAGCTTAACTTTCTTTCCCACCGTCCGGCTCTaGCTTTTTGGCTGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: PSTQGLGPDEPELSLTFFPTVRL*LFGWRR
Trigger: CCTCCTCCAGCCAAAAAGCCAGAGCCGGACGGTGGG...AAAGAAAGTTAAGCTCAACTCTGGCTCATCAGGACCCAGCCCCTGTGTTGATGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp AGAGAACGGGCTCTGTTCTCGGCTCGGGATCACCTCCCAAGTGTACAATATAAAGGGATGTTGTCCTGGTaGGGGTACGGTCGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: RERALFSARDHLPSVQYKGMLSW*GYGRPG
Trigger: TCCTGGGCGACCGTACCCCCACCAGGACAACATCCC...TTTATATTGTACACTTGGGAGGTGATCCCGAGCCGAGAACAGAGCCCGTTCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp CCATCAACACAGGGGCTGGGTCCTGATGAGCCAGAGTTGAGCTTAACTTTCTTTGCCTGGCTCCAGAGCTaGGATGTTGTCCTGGTGGGG +
Preference number: 4 (lower is better)
Translates to: PSTQGLGPDEPELSLTFFAWLQS*DVVLVG
Trigger: CCCCACCAGGACAACATCCCAGCTCTGGAGCCAGGC...AAAGAAAGTTAAGCTCAACTCTGGCTCATCAGGACCCAGCCCCTGTGTTGATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGTCAGCCACACGGAACTaGGGTGGTAACAAGGCACCC +
Preference number: 4 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRSATRN*GGNKAP
Trigger: GGGTGCCTTGTTACCACCCCAGTTCCGTGTGGCTGA...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp CCATCAACACAGGGGCTGGGTCCTGATGAGCCAGAGTTGAGCTTAACTTTCTTTGTGGGGGACTCAGGCTaGGCTAGGGGAGCTTGTGAA +
Preference number: 4 (lower is better)
Translates to: PSTQGLGPDEPELSLTFFVGDSG*ARGACE
Trigger: TTCACAAGCTCCCCTAGCTCAGCCTGAGTCCCCCAC...AAAGAAAGTTAAGCTCAACTCTGGCTCATCAGGACCCAGCCCCTGTGTTGATGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp CCATCAACACAGGGGCTGGGTCCTGATGAGCCAGAGTTGAGCTTAACTTTCTTTTGGATCATCTCCTCCTaGTACTGGTGCCGGTGGCCC +
Preference number: 4 (lower is better)
Translates to: PSTQGLGPDEPELSLTFFWIISS*YWCRWP
Trigger: GGGCCACCGGCACCAGTATCAGGAGGAGATGATCCA...AAAGAAAGTTAAGCTCAACTCTGGCTCATCAGGACCCAGCCCCTGTGTTGATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp AGAGAACGGGCTCTGTTCTCGGCTCGGGATCACCTCCCAAGTGTACAATATAAATGGATCATCTCCTCCTaGTACTGGTGCCGGTGGCCC +
Preference number: 4 (lower is better)
Translates to: RERALFSARDHLPSVQYKWIISS*YWCRWP
Trigger: GGGCCACCGGCACCAGTATCAGGAGGAGATGATCCA...TTTATATTGTACACTTGGGAGGTGATCCCGAGCCGAGAACAGAGCCCGTTCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAAAGGTCCACATCCCAAGAGATaGTGCATGCAGGAGGCAGTT +
Preference number: 4 (lower is better)
Translates to: TRLASNSEIRLASAGIKGPHPKR*CMQEAV
Trigger: AACTGCCTCCTGCATGCAGCATCTCTTGGGATGTGG...ACCTTTAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp CACCCACACACACCTAGTATTTCCCTACTTTCCCTTGGGCCCTGGGATTGGGACCCACATCCCAAGAGATaGTGCATGCAGGAGGCAGTT +
Preference number: 4 (lower is better)
Translates to: HPHTPSISLLSLGPWDWDPHPKR*CMQEAV
Trigger: AACTGCCTCCTGCATGCAGCATCTCTTGGGATGTGG...GTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTGTGGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACAAGGGGCAGCAGCTTGTaGTCTGAATCTGTGAGTGGG +
Preference number: 4 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTRGSSL*SESVSG
Trigger: CCCACTCACAGATTCAGAGCACAAGCTGCTGCCCCT...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGCAGCAGCCTCTTCCTTaGCACCCTTCCAGCTCTTCA +
Preference number: 4 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRQQPLP*HPSSSS
Trigger: TGAAGAGCTGGAAGGGTGGCAAGGAAGAGGCTGCTG...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCTCCTGGCTATACTTaGTCCCGCCATTGCCAACAG +
Preference number: 4 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTPPGYT*SRHCQQ
Trigger: CTGTTGGCAATGGCGGGAGCAAGTATAGCCAGGAGG...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp CACCCACACACACCTAGTATTTCCCTACTTTCCCTTGGGCCCTGGGATTGGGACTGTGAACTCCATCTTTaGCTGGCTCCAGAGCTGGGA +
Preference number: 4 (lower is better)
Translates to: HPHTPSISLLSLGPWDWDCELHL*LAPELG
Trigger: TCCCAGCTCTGGAGCCAGGCAAAGATGGAGTTCACA...GTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTGTGGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp AGAGAACGGGCTCTGTTCTCGGCTCGGGATCACCTCCCAAGTGTACAATATAAAATGCTGGAGCTGGCGTaGGAGATGCCCCTAGACAGG +
Preference number: 4 (lower is better)
Translates to: RERALFSARDHLPSVQYKMLELA*EMPLDR
Trigger: CCTGTCTAGGGGCATCTCCCACGCCAGCTCCAGCAT...TTTATATTGTACACTTGGGAGGTGATCCCGAGCCGAGAACAGAGCCCGTTCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp TGTTTCAAACAGTCTAGCCAAACATCTGGGCTCCTCCACCCCTTCTCAGGTGCACCATTGGAGGAGACATaGGAGCGGGCCAGGGAAACA +
Preference number: 4 (lower is better)
Translates to: CFKQSSQTSGLLHPFSGAPLEET*ERARET
Trigger: TGTTTCCCTGGCCCGCTCCCATGTCTCCTCCAATGG...TGCACCTGAGAAGGGGTGGAGGAGCCCAGATGTTTGGCTAGACTGTTTGAAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp GGTTGCTATGAGTTGGAGGCTAACCTGGGTTATATAGCAAGTACCAGACTGGCTGCCTGGCTCCAGAGCTaGGATGTTGTCCTGGTGGGG +
Preference number: 4 (lower is better)
Translates to: GCYELEANLGYIASTRLAAWLQS*DVVLVG
Trigger: CCCCACCAGGACAACATCCCAGCTCTGGAGCCAGGC...AGCCAGTCTGGTACTTGCTATATAACCCAGGTTAGCCTCCAACTCATAGCAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp GGTGACTGCAGCCAGGAAGAGGGGCTCACGGTGAAGGTTTCACCTGCATTATTCTGTTTGCATTTGGTCTaGGTTGGGGGAAGTCCCCGT +
Preference number: 4 (lower is better)
Translates to: GDCSQEEGLTVKVSPALFCLHLV*VGGSPR
Trigger: ACGGGGACTTCCCCCAACCCAGACCAAATGCAAACA...GAATAATGCAGGTGAAACCTTCACCGTGAGCCCCTCTTCCTGGCTGCAGTCACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CAA 72 bp GCTCTGGTCAGAGCAGAAGCTGTCCAGACTTGTGCTTaGTGCAAATTGCAAGGGAGCTCTCACCACTGGGTC +
Preference number: 4 (lower is better)
Translates to: ALVRAEAVQTCA*CKLQGSSHHWV
Trigger: GACCCAGTGGTGAGAGCTCCCTTGCAATTTGCACAAAGCACAAGTCTGGACAGCTTCTGCTCTGACCAGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CAA 72 bp GCATTCCCACCCAGGCAGGTAGGCATCCTATGTATGTaGTGGGAGAAGGATGACAGAAGTGCACACAGGGTG +
Preference number: 4 (lower is better)
Translates to: AFPPRQVGILCM*WEKDDRSAHRV
Trigger: CACCCTGTGTGCACTTCTGTCATCCTTCTCCCACAACATACATAGGATGCCTACCTGCCTGGGTGGGAATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CAA 72 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTaGGGGATGGTACAGAGGATGCAGGGTGGAGAGAGT +
Preference number: 4 (lower is better)
Translates to: VWRSALWCTGFK*GMVQRMQGGES
Trigger: ACTCTCTCCACCCTGCATCCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp CACCCACACACACCTAGTATTTCCCTACTTTCCCTTGGGCCCTGGGATTGGGACACTGTTCAAAATCACTaGGGGCAGCACTCACATCCC +
Preference number: 4 (lower is better)
Translates to: HPHTPSISLLSLGPWDWDTVQNH*GQHSHP
Trigger: GGGATGTGAGTGCTGCCCTCAGTGATTTTGAACAGT...GTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTGTGGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp TGTTTCAAACAGTCTAGCCAAACATCTGGGCTCCTCCACCCCTTCTCAGGTGCACCACTATGGGCCTCTTaGGCACATGAGCAAGGACGA +
Preference number: 4 (lower is better)
Translates to: CFKQSSQTSGLLHPFSGAPLWAS*AHEQGR
Trigger: TCGTCCTTGCTCATGTGCTCAAGAGGCCCATAGTGG...TGCACCTGAGAAGGGGTGGAGGAGCCCAGATGTTTGGCTAGACTGTTTGAAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp TGTTTCAAACAGTCTAGCCAAACATCTGGGCTCCTCCACCCCTTCTCAGGTGCAAACCGACTCCTTGTCTaGCTCCCCAGACTCAGGAGT +
Preference number: 4 (lower is better)
Translates to: CFKQSSQTSGLLHPFSGANRLLV*LPRLRS
Trigger: ACTCCTGAGTCTGGGGAGTCAGACAAGGAGTCGGTT...TGCACCTGAGAAGGGGTGGAGGAGCCCAGATGTTTGGCTAGACTGTTTGAAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp AGAGAACGGGCTCTGTTCTCGGCTCGGGATCACCTCCCAAGTGTACAATATAAACCAGCGCCTTCTCAGTaGTTCCTTCTCCACCCCCTT +
Preference number: 4 (lower is better)
Translates to: RERALFSARDHLPSVQYKPAPSQ*FLLHPL
Trigger: AAGGGGGTGGAGAAGGAAGCACTGAGAAGGCGCTGG...TTTATATTGTACACTTGGGAGGTGATCCCGAGCCGAGAACAGAGCCCGTTCTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp CCATCAACACAGGGGCTGGGTCCTGATGAGCCAGAGTTGAGCTTAACTTTCTTTCCAGCGCCTTCTCAGTaGTTCCTTCTCCACCCCCTT +
Preference number: 4 (lower is better)
Translates to: PSTQGLGPDEPELSLTFFPAPSQ*FLLHPL
Trigger: AAGGGGGTGGAGAAGGAAGCACTGAGAAGGCGCTGG...AAAGAAAGTTAAGCTCAACTCTGGCTCATCAGGACCCAGCCCCTGTGTTGATGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp AGAGAACGGGCTCTGTTCTCGGCTCGGGATCACCTCCCAAGTGTACAATATAAACCTCAGCATGGTGTCTaGCACGACCACTATGGGCCT +
Preference number: 4 (lower is better)
Translates to: RERALFSARDHLPSVQYKPQHGV*HDHYGP
Trigger: AGGCCCATAGTGGTCGTGGCAGACACCATGCTGAGG...TTTATATTGTACACTTGGGAGGTGATCCCGAGCCGAGAACAGAGCCCGTTCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAAAGGTTGCTGCCCAAGGTTTTaGCAAAGCTGCCCAGTTTGT +
Preference number: 4 (lower is better)
Translates to: TRLASNSEIRLASAGIKGCCPRF*QSCPVC
Trigger: ACAAACTGGGCAGCTTTGGCAAAACCTTGGGCAGCA...ACCTTTAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp TGTTTCAAACAGTCTAGCCAAACATCTGGGCTCCTCCACCCCTTCTCAGGTGCACCTCCTGGCTATACTTaGTCCCGCCATTGCCAACAG +
Preference number: 4 (lower is better)
Translates to: CFKQSSQTSGLLHPFSGAPPGYT*SRHCQQ
Trigger: CTGTTGGCAATGGCGGGAGCAAGTATAGCCAGGAGG...TGCACCTGAGAAGGGGTGGAGGAGCCCAGATGTTTGGCTAGACTGTTTGAAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGTGTGAACTCCATCTTTaGCTGGCTCCAGAGCTGGGA +
Preference number: 4 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRCELHL*LAPELG
Trigger: TCCCAGCTCTGGAGCCAGGCAAAGATGGAGTTCACA...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAGTGAGATCTGGAAGCTaGAAGGCACAGATGGGCATT +
Preference number: 4 (lower is better)
Translates to: CRPGWPRTQKSAWQVLGLVRSGS*KAQMGI
Trigger: AATGCCCATCTGTGCCTTCCAGCTTCCAGATCTCAC...TAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp CACCCACACACACCTAGTATTTCCCTACTTTCCCTTGGGCCCTGGGATTGGGACGGCTGGAACCTCCAATaGCAGATAGATCCCTCCAAA +
Preference number: 4 (lower is better)
Translates to: HPHTPSISLLSLGPWDWDGWNLQ*QIDPSK
Trigger: TTTGGAGGGATCTATCTGCCATTGGAGGTTCCAGCC...GTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTGTGGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGGTGACACTGGCTGGCTaGAACCTCCAATGGCAGATA +
Preference number: 4 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRVTLAG*NLQWQI
Trigger: TATCTGCCATTGGAGGTTCCAGCCAGCCAGTGTCAC...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp TGTTTCAAACAGTCTAGCCAAACATCTGGGCTCCTCCACCCCTTCTCAGGTGCAACTCAGGAGTGGACCTaGGTTCATCTCCAGCTGAGG +
Preference number: 4 (lower is better)
Translates to: CFKQSSQTSGLLHPFSGATQEWT*VHLQLR
Trigger: CCTCAGCTGGAGATGAACCCAGGTCCACTCCTGAGT...TGCACCTGAGAAGGGGTGGAGGAGCCCAGATGTTTGGCTAGACTGTTTGAAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp AGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCTCAATGCTTCCTTTGCATCACCTCCTaGCTATACTTGCTCCCGCCA +
Preference number: 4 (lower is better)
Translates to: RSPKDCWSPPPHHTPQCFLCITS*LYLLPP
Trigger: TGGCGGGAGCAAGTATAGCCAGGAGGTGATGCAAAG...GAAGCATTGAGGTGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp ACTGGATGGAAAGGGGATAGAGAGGCAAGGAGCTGTGTCAGATTTTTCCATTTTCGGGGTTCCTGGCAGTaGACTCCACCCCCAGAAGGC +
Preference number: 4 (lower is better)
Translates to: TGWKGDREARSCVRFFHFRGSWQ*TPPPEG
Trigger: GCCTTCTGGGGGTGGAGTCCACTGCCAGGAACCCCG...AAAATGGAAAAATCTGACACAGCTCCTTGCCTCTCTATCCCCTTTCCATCCAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAAAGGTGCCCAGGATACTGTCTaGGAAAGGTGGCATATGATG +
Preference number: 4 (lower is better)
Translates to: TRLASNSEIRLASAGIKGAQDTV*ERWHMM
Trigger: CATCATATGCCACCTTTCCCAGACAGTATCCTGGGC...ACCTTTAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAAACTCCATCTTTGCCTaGCTCCAGAGCTGGGATGTT +
Preference number: 4 (lower is better)
Translates to: CRPGWPRTQKSAWQVLGLNSIFA*LQSWDV
Trigger: AACATCCCAGCTCTGGAGCCAGGCAAAGATGGAGTT...TAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACATGTTTGCATTTGGTCTaGGTTGGGGGAAGTCCCCGT +
Preference number: 4 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTCLHLV*VGGSPR
Trigger: ACGGGGACTTCCCCCAACCCAGACCAAATGCAAACA...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGTGTTTGCATTTGGTCTaGGTTGGGGGAAGTCCCCGT +
Preference number: 4 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRCLHLV*VGGSPR
Trigger: ACGGGGACTTCCCCCAACCCAGACCAAATGCAAACA...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAAAGGTTCGGTTGTTTGCATTTaGTCTGGGTTGGGGGAAGTC +
Preference number: 4 (lower is better)
Translates to: TRLASNSEIRLASAGIKGSVVCI*SGLGEV
Trigger: GACTTCCCCCAACCCAGACCAAATGCAAACAACCGA...ACCTTTAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp CACCCACACACACCTAGTATTTCCCTACTTTCCCTTGGGCCCTGGGATTGGGACTCGGTTGTTTGCATTTaGTCTGGGTTGGGGGAAGTC +
Preference number: 4 (lower is better)
Translates to: HPHTPSISLLSLGPWDWDSVVCI*SGLGEV
Trigger: GACTTCCCCCAACCCAGACCAAATGCAAACAACCGA...GTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTGTGGGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CAA 72 bp TGGGACAGAAGAGGTTATGAGCTTCCCCCTTCTGCCTaGAAGTCTCAAGTCAACTGTGTGCGCAGGAGCAGT +
Preference number: 4 (lower is better)
Translates to: WDRRGYELPPSA*KSQVNCVRRSS
Trigger: ACTGCTCCTGCGCACACAGTTGACTTGAGACTTCAAGGCAGAAGGGGGAAGCTCATAACCTCTTCTGTCCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp GGTGACTGCAGCCAGGAAGAGGGGCTCACGGTGAAGGTTTCACCTGCATTATTCTGTGCTCTGAATCTGTaGGTGGGATCACAGCTTGTT +
Preference number: 4 (lower is better)
Translates to: GDCSQEEGLTVKVSPALFCALNL*VGSQLV
Trigger: AACAAGCTGTGATCCCACTCACAGATTCAGAGCACA...GAATAATGCAGGTGAAACCTTCACCGTGAGCCCCTCTTCCTGGCTGCAGTCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAAAGGTCTAACCCTCCATTCATaGTCTTCCTCTCAACCTCCT +
Preference number: 4 (lower is better)
Translates to: TRLASNSEIRLASAGIKGLTLHS*SSSQPP
Trigger: AGGAGGTTGAGAGGAAGATCATGAATGGAGGGTTAG...ACCTTTAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp CACCCACACACACCTAGTATTTCCCTACTTTCCCTTGGGCCCTGGGATTGGGACCTAACCCTCCATTCATaGTCTTCCTCTCAACCTCCT +
Preference number: 4 (lower is better)
Translates to: HPHTPSISLLSLGPWDWDLTLHS*SSSQPP
Trigger: AGGAGGTTGAGAGGAAGATCATGAATGGAGGGTTAG...GTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTGTGGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp AGAGAACGGGCTCTGTTCTCGGCTCGGGATCACCTCCCAAGTGTACAATATAAAAACAAGGCACCCCTGTaGACTCCATCTTTGCCTGGC +
Preference number: 4 (lower is better)
Translates to: RERALFSARDHLPSVQYKNKAPL*TPSLPG
Trigger: GCCAGGCAAAGATGGAGTTCACAGGGGTGCCTTGTT...TTTATATTGTACACTTGGGAGGTGATCCCGAGCCGAGAACAGAGCCCGTTCTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp CACCCACACACACCTAGTATTTCCCTACTTTCCCTTGGGCCCTGGGATTGGGACCCTGACTCTTTATTCTaGTGTGTTTGCTGCCACCTC +
Preference number: 4 (lower is better)
Translates to: HPHTPSISLLSLGPWDWDPDSLF*CVCCHL
Trigger: GAGGTGGCAGCAAACACAGCAGAATAAAGAGTCAGG...GTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTGTGGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp AGAGAACGGGCTCTGTTCTCGGCTCGGGATCACCTCCCAAGTGTACAATATAAATGCCGAGAGAACTGCTaGCAACCGACTCCTTGTCTG +
Preference number: 4 (lower is better)
Translates to: RERALFSARDHLPSVQYKCRENC*QPTPCL
Trigger: CAGACAAGGAGTCGGTTGGCAGCAGTTCTCTCGGCA...TTTATATTGTACACTTGGGAGGTGATCCCGAGCCGAGAACAGAGCCCGTTCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACATGCTGCCCAAGGTTTTaGCAAAGCTGCCCAGTTTGT +
Preference number: 4 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTCCPRF*QSCPVC
Trigger: ACAAACTGGGCAGCTTTGGCAAAACCTTGGGCAGCA...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACTTCTGCTTCTGCTCTaGCAGGAATCTTTCCTCAGC +
Preference number: 4 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTLLLLL*QESFLS
Trigger: GCTGAGGAAAGATTCCTGGCAGAGCAGAAGCAGAAG...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp AGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCTCAATGCTTCCTCTCAACCTCCTTCTaGTTCTGCTCTGCCAGGAAT +
Preference number: 4 (lower is better)
Translates to: RSPKDCWSPPPHHTPQCFLSTSF*FCSARN
Trigger: ATTCCTGGCAGAGCAGAAGCAGAAGGAGGTTGAGAG...GAAGCATTGAGGTGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp AGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCTCAATGCTTCGTGAGATCTGGAAGCTaGAAGGCACAGATGGGCATT +
Preference number: 4 (lower is better)
Translates to: RSPKDCWSPPPHHTPQCFVRSGS*KAQMGI
Trigger: AATGCCCATCTGTGCCTTCCAGCTTCCAGATCTCAC...GAAGCATTGAGGTGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp GGTGACTGCAGCCAGGAAGAGGGGCTCACGGTGAAGGTTTCACCTGCATTATTCGTACACAGTGAGATCTaGAAGCTGGAAGGCACAGAT +
Preference number: 4 (lower is better)
Translates to: GDCSQEEGLTVKVSPALFVHSEI*KLEGTD
Trigger: ATCTGTGCCTTCCAGCTTCCAGATCTCACTGTGTAC...GAATAATGCAGGTGAAACCTTCACCGTGAGCCCCTCTTCCTGGCTGCAGTCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp AGAGAACGGGCTCTGTTCTCGGCTCGGGATCACCTCCCAAGTGTACAATATAAACAGAGTCCCTCAGCATaGTGTCTGCCACGACCACTA +
Preference number: 4 (lower is better)
Translates to: RERALFSARDHLPSVQYKQSPSA*CLPRPL
Trigger: TAGTGGTCGTGGCAGACACCATGCTGAGGGACTCTG...TTTATATTGTACACTTGGGAGGTGATCCCGAGCCGAGAACAGAGCCCGTTCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp AGAGAACGGGCTCTGTTCTCGGCTCGGGATCACCTCCCAAGTGTACAATATAAAATCGGTGACACTGGCTaGCTGGAACCTCCAATGGCA +
Preference number: 4 (lower is better)
Translates to: RERALFSARDHLPSVQYKIGDTG*LEPPMA
Trigger: TGCCATTGGAGGTTCCAGCCAGCCAGTGTCACCGAT...TTTATATTGTACACTTGGGAGGTGATCCCGAGCCGAGAACAGAGCCCGTTCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp AGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCTCAATGCTTCTCACAGCTTGTTCTTTaGCGCTCTCCTTCTGCTCCA +
Preference number: 4 (lower is better)
Translates to: RSPKDCWSPPPHHTPQCFSQLVL*RSPSAP
Trigger: TGGAGCAGAAGGAGAGCGCCAAAGAACAAGCTGTGA...GAAGCATTGAGGTGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp AGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCTCAATGCTTCACTGTCTGGGAAAGGTaGCATATGATGGTAAGCCCC +
Preference number: 4 (lower is better)
Translates to: RSPKDCWSPPPHHTPQCFTVWER*HMMVSP
Trigger: GGGGCTTACCATCATATGCCACCTTTCCCAGACAGT...GAAGCATTGAGGTGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGGCCCAGGATACTGTCTaGGAAAGGTGGCATATGATG +
Preference number: 4 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRAQDTV*ERWHMM
Trigger: CATCATATGCCACCTTTCCCAGACAGTATCCTGGGC...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp AGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCTCAATGCTTCAACTCCATCTTTGCCTaGCTCCAGAGCTGGGATGTT +
Preference number: 4 (lower is better)
Translates to: RSPKDCWSPPPHHTPQCFNSIFA*LQSWDV
Trigger: AACATCCCAGCTCTGGAGCCAGGCAAAGATGGAGTT...GAAGCATTGAGGTGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp ACTGGATGGAAAGGGGATAGAGAGGCAAGGAGCTGTGTCAGATTTTTCCATTTTTGGGGGAAGTCCCCGTaGAGCTCCAGCCCATCCATC +
Preference number: 4 (lower is better)
Translates to: TGWKGDREARSCVRFFHFWGKSP*SSSPSI
Trigger: GATGGATGGGCTGGAGCTCCACGGGGACTTCCCCCA...AAAATGGAAAAATCTGACACAGCTCCTTGCCTCTCTATCCCCTTTCCATCCAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 23 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTACGTATACACCAGTCCTaGCTCTTTATTCTGCTGTGT +
Preference number: 4 (lower is better)
Translates to: CRPGWPRTQKSAWQVLGLRIHQS*LFILLC
Trigger: ACACAGCAGAATAAAGAGTCAGGACTGGTGTATACG...TAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp ACTGGATGGAAAGGGGATAGAGAGGCAAGGAGCTGTGTCAGATTTTTCCATTTTGTGGGGGACTCAGGCTaGGCTAGGGGAGCTTGTGAA +
Preference number: 4 (lower is better)
Translates to: TGWKGDREARSCVRFFHFVGDSG*ARGACE
Trigger: TTCACAAGCTCCCCTAGCTCAGCCTGAGTCCCCCAC...AAAATGGAAAAATCTGACACAGCTCCTTGCCTCTCTATCCCCTTTCCATCCAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGCTAACCCTCCATTCATaGTCTTCCTCTCAACCTCCT +
Preference number: 4 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRLTLHS*SSSQPP
Trigger: AGGAGGTTGAGAGGAAGATCATGAATGGAGGGTTAG...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp CCATCAACACAGGGGCTGGGTCCTGATGAGCCAGAGTTGAGCTTAACTTTCTTTGCAACCAGCATGGACTaGTCAATGAGGTCTCGCTCT +
Preference number: 4 (lower is better)
Translates to: PSTQGLGPDEPELSLTFFATSMD*SMRSRS
Trigger: AGAGCGAGACCTCATTGAGCAGTCCATGCTGGTTGC...AAAGAAAGTTAAGCTCAACTCTGGCTCATCAGGACCCAGCCCCTGTGTTGATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp CCATCAACACAGGGGCTGGGTCCTGATGAGCCAGAGTTGAGCTTAACTTTCTTTCCACATCCCAAGAGATaGTGCATGCAGGAGGCAGTT +
Preference number: 4 (lower is better)
Translates to: PSTQGLGPDEPELSLTFFPHPKR*CMQEAV
Trigger: AACTGCCTCCTGCATGCAGCATCTCTTGGGATGTGG...AAAGAAAGTTAAGCTCAACTCTGGCTCATCAGGACCCAGCCCCTGTGTTGATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp AGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCTCAATGCTTCCCTGACTCTTTATTCTaGTGTGTTTGCTGCCACCTC +
Preference number: 4 (lower is better)
Translates to: RSPKDCWSPPPHHTPQCFPDSLF*CVCCHL
Trigger: GAGGTGGCAGCAAACACAGCAGAATAAAGAGTCAGG...GAAGCATTGAGGTGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGCCGTTGGAACCCAGATaGATTCTGGGTTCACTTGAA +
Preference number: 4 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRPLEPR*ILGSLE
Trigger: TTCAAGTGAACCCAGAATGCATCTGGGTTCCAACGG...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp GGTTGCTATGAGTTGGAGGCTAACCTGGGTTATATAGCAAGTACCAGACTGGCTGCCCTCCCCTTGCATTaGGATCCTCATAGTGCTCAG +
Preference number: 4 (lower is better)
Translates to: GCYELEANLGYIASTRLAALPLH*DPHSAQ
Trigger: CTGAGCACTATGAGGATCGCAATGCAAGGGGAGGGC...AGCCAGTCTGGTACTTGCTATATAACCCAGGTTAGCCTCCAACTCATAGCAACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp CACCCACACACACCTAGTATTTCCCTACTTTCCCTTGGGCCCTGGGATTGGGACTCTTTCCTCAGCATCTaGAAGGTAACGCTGGATCAT +
Preference number: 4 (lower is better)
Translates to: HPHTPSISLLSLGPWDWDSFLSI*KVTLDH
Trigger: ATGATCCAGCGTTACCTTGCAGATGCTGAGGAAAGA...GTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTGTGGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp AGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCTCAATGCTTCGCTCTCTGTAGCCATTaGTATAGGAATCAGCCACAC +
Preference number: 4 (lower is better)
Translates to: RSPKDCWSPPPHHTPQCFALCSH*YRNQPH
Trigger: GTGTGGCTGATTCCTATAGCAATGGCTACAGAGAGC...GAAGCATTGAGGTGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGGCTCTCTGTAGCCATTaGTATAGGAATCAGCCACAC +
Preference number: 4 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRALCSH*YRNQPH
Trigger: GTGTGGCTGATTCCTATAGCAATGGCTACAGAGAGC...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp ACTGGATGGAAAGGGGATAGAGAGGCAAGGAGCTGTGTCAGATTTTTCCATTTTATGCTGGAGCTGGCGTaGGAGATGCCCCTAGACAGG +
Preference number: 4 (lower is better)
Translates to: TGWKGDREARSCVRFFHFMLELA*EMPLDR
Trigger: CCTGTCTAGGGGCATCTCCCACGCCAGCTCCAGCAT...AAAATGGAAAAATCTGACACAGCTCCTTGCCTCTCTATCCCCTTTCCATCCAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp GGTGACTGCAGCCAGGAAGAGGGGCTCACGGTGAAGGTTTCACCTGCATTATTCACCAAGTCTCTATCATaGAAACCCCACATCCCAAGA +
Preference number: 4 (lower is better)
Translates to: GDCSQEEGLTVKVSPALFTKSLS*KPHIPR
Trigger: TCTTGGGATGTGGGGTTTCCATGATAGAGACTTGGT...GAATAATGCAGGTGAAACCTTCACCGTGAGCCCCTCTTCCTGGCTGCAGTCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAAAGGTATAGATCCCTCCAAATaGGATAGGGGCAAATGCTTC +
Preference number: 4 (lower is better)
Translates to: TRLASNSEIRLASAGIKGIDPSK*DRGKCF
Trigger: GAAGCATTTGCCCCTATCCCATTTGGAGGGATCTAT...ACCTTTAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp GGTGACTGCAGCCAGGAAGAGGGGCTCACGGTGAAGGTTTCACCTGCATTATTCATAGATCCCTCCAAATaGGATAGGGGCAAATGCTTC +
Preference number: 4 (lower is better)
Translates to: GDCSQEEGLTVKVSPALFIDPSK*DRGKCF
Trigger: GAAGCATTTGCCCCTATCCCATTTGGAGGGATCTAT...GAATAATGCAGGTGAAACCTTCACCGTGAGCCCCTCTTCCTGGCTGCAGTCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp ATTTTGGAAAGCTATGGAGAGGGAAGGTACTTCTATTTTAAGGCACAGCATGGACGGGGTTCCTGGCAGTaGACTCCACCCCCAGAAGGC +
Preference number: 4 (lower is better)
Translates to: ILESYGEGRYFYFKAQHGRGSWQ*TPPPEG
Trigger: GCCTTCTGGGGGTGGAGTCCACTGCCAGGAACCCCG...TCCATGCTGTGCCTTAAAATAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp TGTTTCAAACAGTCTAGCCAAACATCTGGGCTCCTCCACCCCTTCTCAGGTGCAACTGTCTGGGAAAGGTaGCATATGATGGTAAGCCCC +
Preference number: 4 (lower is better)
Translates to: CFKQSSQTSGLLHPFSGATVWER*HMMVSP
Trigger: GGGGCTTACCATCATATGCCACCTTTCCCAGACAGT...TGCACCTGAGAAGGGGTGGAGGAGCCCAGATGTTTGGCTAGACTGTTTGAAACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp ACTGGATGGAAAGGGGATAGAGAGGCAAGGAGCTGTGTCAGATTTTTCCATTTTGCATTTGGTCTGGGTTaGGGGAAGTCCCCGTGGAGC +
Preference number: 4 (lower is better)
Translates to: TGWKGDREARSCVRFFHFAFGLG*GKSPWS
Trigger: GCTCCACGGGGACTTCCCCCAACCCAGACCAAATGC...AAAATGGAAAAATCTGACACAGCTCCTTGCCTCTCTATCCCCTTTCCATCCAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGTTCCCAGCATGGACTTaGCGCAACTGTTCAAAATCA +
Preference number: 4 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRFPAWT*RNCSKS
Trigger: TGATTTTGAACAGTTGCGTCAAGTCCATGCTGGGAA...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp CACCCACACACACCTAGTATTTCCCTACTTTCCCTTGGGCCCTGGGATTGGGACGGCGTTTTTCTTGAATaGCGTCATCTTGTCTCTGAA +
Preference number: 4 (lower is better)
Translates to: HPHTPSISLLSLGPWDWDGVFLE*RHLVSE
Trigger: TTCAGAGACAAGATGACGTCATTCAAGAAAAACGCC...GTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTGTGGGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAGGCGTTTTTCTTGAATaGCGTCATCTTGTCTCTGAA +
Preference number: 4 (lower is better)
Translates to: CRPGWPRTQKSAWQVLGLGVFLE*RHLVSE
Trigger: TTCAGAGACAAGATGACGTCATTCAAGAAAAACGCC...TAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACACCAGAGGGGATCGGTaGCACTGGCTGGCTGGAACC +
Preference number: 4 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNTRGDR*HWLAGT
Trigger: GGTTCCAGCCAGCCAGTGTCACCGATCCCCTCTGGT...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAAAGGTTCATTCCATTCCTTCTaGCACTCATCTTCCGTATAC +
Preference number: 4 (lower is better)
Translates to: TRLASNSEIRLASAGIKGSFHSF*HSSSVY
Trigger: GTATACGGAAGATGAGTGGCAGAAGGAATGGAATGA...ACCTTTAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACAACAAAAATGTACTTaGCCTCCCCTTGCATTGCGA +
Preference number: 4 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTQQKCT*PPLALR
Trigger: TCGCAATGCAAGGGGAGGGCAAGTACATTTTTGTTG...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp AGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCTCAATGCTTCTCTTTCCTCAGCATCTaGAAGGTAACGCTGGATCAT +
Preference number: 4 (lower is better)
Translates to: RSPKDCWSPPPHHTPQCFSFLSI*KVTLDH
Trigger: ATGATCCAGCGTTACCTTGCAGATGCTGAGGAAAGA...GAAGCATTGAGGTGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp CCATCAACACAGGGGCTGGGTCCTGATGAGCCAGAGTTGAGCTTAACTTTCTTTCTTCTGCTTCTGCTCTaGCAGGAATCTTTCCTCAGC +
Preference number: 4 (lower is better)
Translates to: PSTQGLGPDEPELSLTFFLLLLL*QESFLS
Trigger: GCTGAGGAAAGATTCCTGGCAGAGCAGAAGCAGAAG...AAAGAAAGTTAAGCTCAACTCTGGCTCATCAGGACCCAGCCCCTGTGTTGATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACAGGTGTCCATAGAAGCTaGAGTTCGGTTGTTTGCATT +
Preference number: 4 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTGVHRS*SSVVCI
Trigger: AATGCAAACAACCGAACTGCAGCTTCTATGGACACC...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGACCAAGTCTCTATCATaGAAACCCCACATCCCAAGA +
Preference number: 4 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRTKSLS*KPHIPR
Trigger: TCTTGGGATGTGGGGTTTCCATGATAGAGACTTGGT...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAAAGGTAACCCAGATGCATTCTaGGTTCACTTGAAGCAAGTT +
Preference number: 4 (lower is better)
Translates to: TRLASNSEIRLASAGIKGNPDAF*VHLKQV
Trigger: AACTTGCTTCAAGTGAACCCAGAATGCATCTGGGTT...ACCTTTAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp CACCCACACACACCTAGTATTTCCCTACTTTCCCTTGGGCCCTGGGATTGGGACAACCCAGATGCATTCTaGGTTCACTTGAAGCAAGTT +
Preference number: 4 (lower is better)
Translates to: HPHTPSISLLSLGPWDWDNPDAF*VHLKQV
Trigger: AACTTGCTTCAAGTGAACCCAGAATGCATCTGGGTT...GTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTGTGGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp AGAGAACGGGCTCTGTTCTCGGCTCGGGATCACCTCCCAAGTGTACAATATAAAGCCCAGGATACTGTCTaGGAAAGGTGGCATATGATG +
Preference number: 4 (lower is better)
Translates to: RERALFSARDHLPSVQYKAQDTV*ERWHMM
Trigger: CATCATATGCCACCTTTCCCAGACAGTATCCTGGGC...TTTATATTGTACACTTGGGAGGTGATCCCGAGCCGAGAACAGAGCCCGTTCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACGGGATGTTGTCCTGGTaGGGGTACGGTCGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNGMLSW*GYGRPG
Trigger: TCCTGGGCGACCGTACCCCCACCAGGACAACATCCC...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CAA 72 bp GCACTCAGAAGACTGAGGCAGGAGGGTTGCTATGAGTaGGAGGCTAACCTGGGTTATATAGCAAGTACCAGA +
Preference number: 4 (lower is better)
Translates to: ALRRLRQEGCYE*EANLGYIASTR
Trigger: TCTGGTACTTGCTATATAACCCAGGTTAGCCTCCAACTCATAGCAACCCTCCTGCCTCAGTCTTCTGAGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp AGAGAACGGGCTCTGTTCTCGGCTCGGGATCACCTCCCAAGTGTACAATATAAATGTGCTCTGAATCTGTaGGTGGGATCACAGCTTGTT +
Preference number: 4 (lower is better)
Translates to: RERALFSARDHLPSVQYKCALNL*VGSQLV
Trigger: AACAAGCTGTGATCCCACTCACAGATTCAGAGCACA...TTTATATTGTACACTTGGGAGGTGATCCCGAGCCGAGAACAGAGCCCGTTCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp ACTGGATGGAAAGGGGATAGAGAGGCAAGGAGCTGTGTCAGATTTTTCCATTTTAGCCAGCCCTGGCTCTaGACCTGTGGAACGAACAAA +
Preference number: 4 (lower is better)
Translates to: TGWKGDREARSCVRFFHFSQPWL*TCGTNK
Trigger: TTTGTTCGTTCCACAGGTGCAGAGCCAGGGCTGGCT...AAAATGGAAAAATCTGACACAGCTCCTTGCCTCTCTATCCCCTTTCCATCCAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp AGAGAACGGGCTCTGTTCTCGGCTCGGGATCACCTCCCAAGTGTACAATATAAACCGTTGGAACCCAGATaGATTCTGGGTTCACTTGAA +
Preference number: 4 (lower is better)
Translates to: RERALFSARDHLPSVQYKPLEPR*ILGSLE
Trigger: TTCAAGTGAACCCAGAATGCATCTGGGTTCCAACGG...TTTATATTGTACACTTGGGAGGTGATCCCGAGCCGAGAACAGAGCCCGTTCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp ACTGGATGGAAAGGGGATAGAGAGGCAAGGAGCTGTGTCAGATTTTTCCATTTTAGGGGCAGCAGCTTGTaGTCTGAATCTGTGAGTGGG +
Preference number: 4 (lower is better)
Translates to: TGWKGDREARSCVRFFHFRGSSL*SESVSG
Trigger: CCCACTCACAGATTCAGAGCACAAGCTGCTGCCCCT...AAAATGGAAAAATCTGACACAGCTCCTTGCCTCTCTATCCCCTTTCCATCCAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp TGTTTCAAACAGTCTAGCCAAACATCTGGGCTCCTCCACCCCTTCTCAGGTGCAGGTGTCCATAGAAGCTaGAGTTCGGTTGTTTGCATT +
Preference number: 4 (lower is better)
Translates to: CFKQSSQTSGLLHPFSGAGVHRS*SSVVCI
Trigger: AATGCAAACAACCGAACTGCAGCTTCTATGGACACC...TGCACCTGAGAAGGGGTGGAGGAGCCCAGATGTTTGGCTAGACTGTTTGAAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACGTCGAGAAGGGCGAGTaGGCTCTCTATCCGAACCCC +
Preference number: 4 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNVEKGE*ALYPNP
Trigger: GGGGTTCGGATAGAGAGCCCACTCGCCCTTCTCGAC...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp TGTTTCAAACAGTCTAGCCAAACATCTGGGCTCCTCCACCCCTTCTCAGGTGCAACCAAGTCTCTATCATaGAAACCCCACATCCCAAGA +
Preference number: 4 (lower is better)
Translates to: CFKQSSQTSGLLHPFSGATKSLS*KPHIPR
Trigger: TCTTGGGATGTGGGGTTTCCATGATAGAGACTTGGT...TGCACCTGAGAAGGGGTGGAGGAGCCCAGATGTTTGGCTAGACTGTTTGAAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp AGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCTCAATGCTTCAACCCAGATGCATTCTaGGTTCACTTGAAGCAAGTT +
Preference number: 4 (lower is better)
Translates to: RSPKDCWSPPPHHTPQCFNPDAF*VHLKQV
Trigger: AACTTGCTTCAAGTGAACCCAGAATGCATCTGGGTT...GAAGCATTGAGGTGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp TGTTTCAAACAGTCTAGCCAAACATCTGGGCTCCTCCACCCCTTCTCAGGTGCAATAGATCCCTCCAAATaGGATAGGGGCAAATGCTTC +
Preference number: 4 (lower is better)
Translates to: CFKQSSQTSGLLHPFSGAIDPSK*DRGKCF
Trigger: GAAGCATTTGCCCCTATCCCATTTGGAGGGATCTAT...TGCACCTGAGAAGGGGTGGAGGAGCCCAGATGTTTGGCTAGACTGTTTGAAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp CTTGCTTATTCTGAACAAGTTGATCTTTGTTTTGTTTCCCAGACGTTCCTTAACCGGGGTTCCTGGCAGTaGACTCCACCCCCAGAAGGC +
Preference number: 4 (lower is better)
Translates to: LAYSEQVDLCFVSQTFLNRGSWQ*TPPPEG
Trigger: GCCTTCTGGGGGTGGAGTCCACTGCCAGGAACCCCG...GTTAAGGAACGTCTGGGAAACAAAACAAAGATCAACTTGTTCAGAATAAGCAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CAA 72 bp AGAAATAGCTCTGGTCAGAGCAGAAGCTGTCCAGACTaGTGCTTTGTGCAAATTGCAAGGGAGCTCTCACCA +
Preference number: 4 (lower is better)
Translates to: RNSSGQSRSCPD*CFVQIARELSP
Trigger: TGGTGAGAGCTCCCTTGCAATTTGCACAAAGCACAAGTCTGGACAGCTTCTGCTCTGACCAGAGCTATTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp ACTGGATGGAAAGGGGATAGAGAGGCAAGGAGCTGTGTCAGATTTTTCCATTTTACGTCATCTTGTCTCTaGAGGATGGGTCGAGAAGGG +
Preference number: 4 (lower is better)
Translates to: TGWKGDREARSCVRFFHFTSSCL*RMGREG
Trigger: CCCTTCTCGACCCATCCTTCAGAGACAAGATGACGT...AAAATGGAAAAATCTGACACAGCTCCTTGCCTCTCTATCCCCTTTCCATCCAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp TGTTTCAAACAGTCTAGCCAAACATCTGGGCTCCTCCACCCCTTCTCAGGTGCAGGCGTTTTTCTTGAATaGCGTCATCTTGTCTCTGAA +
Preference number: 4 (lower is better)
Translates to: CFKQSSQTSGLLHPFSGAGVFLE*RHLVSE
Trigger: TTCAGAGACAAGATGACGTCATTCAAGAAAAACGCC...TGCACCTGAGAAGGGGTGGAGGAGCCCAGATGTTTGGCTAGACTGTTTGAAACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp CCATCAACACAGGGGCTGGGTCCTGATGAGCCAGAGTTGAGCTTAACTTTCTTTCGTATACACCAGTCCTaGCTCTTTATTCTGCTGTGT +
Preference number: 4 (lower is better)
Translates to: PSTQGLGPDEPELSLTFFRIHQS*LFILLC
Trigger: ACACAGCAGAATAAAGAGTCAGGACTGGTGTATACG...AAAGAAAGTTAAGCTCAACTCTGGCTCATCAGGACCCAGCCCCTGTGTTGATGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp GGTTGCTATGAGTTGGAGGCTAACCTGGGTTATATAGCAAGTACCAGACTGGCTTGTGCTCTGAATCTGTaGGTGGGATCACAGCTTGTT +
Preference number: 4 (lower is better)
Translates to: GCYELEANLGYIASTRLACALNL*VGSQLV
Trigger: AACAAGCTGTGATCCCACTCACAGATTCAGAGCACA...AGCCAGTCTGGTACTTGCTATATAACCCAGGTTAGCCTCCAACTCATAGCAACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp ATTTTGGAAAGCTATGGAGAGGGAAGGTACTTCTATTTTAAGGCACAGCATGGACCTCAGCATGGTGTCTaGCACGACCACTATGGGCCT +
Preference number: 4 (lower is better)
Translates to: ILESYGEGRYFYFKAQHGPQHGV*HDHYGP
Trigger: AGGCCCATAGTGGTCGTGGCAGACACCATGCTGAGG...TCCATGCTGTGCCTTAAAATAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp AGAGAACGGGCTCTGTTCTCGGCTCGGGATCACCTCCCAAGTGTACAATATAAACAACAAAAATGTACTTaGCCTCCCCTTGCATTGCGA +
Preference number: 4 (lower is better)
Translates to: RERALFSARDHLPSVQYKQQKCT*PPLALR
Trigger: TCGCAATGCAAGGGGAGGGCAAGTACATTTTTGTTG...TTTATATTGTACACTTGGGAGGTGATCCCGAGCCGAGAACAGAGCCCGTTCTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp GGTTGCTATGAGTTGGAGGCTAACCTGGGTTATATAGCAAGTACCAGACTGGCTGTACACAGTGAGATCTaGAAGCTGGAAGGCACAGAT +
Preference number: 4 (lower is better)
Translates to: GCYELEANLGYIASTRLAVHSEI*KLEGTD
Trigger: ATCTGTGCCTTCCAGCTTCCAGATCTCACTGTGTAC...AGCCAGTCTGGTACTTGCTATATAACCCAGGTTAGCCTCCAACTCATAGCAACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp ACTGGATGGAAAGGGGATAGAGAGGCAAGGAGCTGTGTCAGATTTTTCCATTTTGTGACACTGGCTGGCTaGAACCTCCAATGGCAGATA +
Preference number: 4 (lower is better)
Translates to: TGWKGDREARSCVRFFHFVTLAG*NLQWQI
Trigger: TATCTGCCATTGGAGGTTCCAGCCAGCCAGTGTCAC...AAAATGGAAAAATCTGACACAGCTCCTTGCCTCTCTATCCCCTTTCCATCCAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp CTTGCTTATTCTGAACAAGTTGATCTTTGTTTTGTTTCCCAGACGTTCCTTAACCCAGCCCTCCAGGCTTaGGGCCCTTGCTGTGCATCA +
Preference number: 4 (lower is better)
Translates to: LAYSEQVDLCFVSQTFLNPALQA*GPCCAS
Trigger: TGATGCACAGCAAGGGCCCCAAGCCTGGAGGGCTGG...GTTAAGGAACGTCTGGGAAACAAAACAAAGATCAACTTGTTCAGAATAAGCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp ACTGGATGGAAAGGGGATAGAGAGGCAAGGAGCTGTGTCAGATTTTTCCATTTTCTTTGCATCACCTCCTaGCTATACTTGCTCCCGCCA +
Preference number: 4 (lower is better)
Translates to: TGWKGDREARSCVRFFHFLCITS*LYLLPP
Trigger: TGGCGGGAGCAAGTATAGCCAGGAGGTGATGCAAAG...AAAATGGAAAAATCTGACACAGCTCCTTGCCTCTCTATCCCCTTTCCATCCAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp ATTTTGGAAAGCTATGGAGAGGGAAGGTACTTCTATTTTAAGGCACAGCATGGACCACTATGGGCCTCTTaGGCACATGAGCAAGGACGA +
Preference number: 4 (lower is better)
Translates to: ILESYGEGRYFYFKAQHGPLWAS*AHEQGR
Trigger: TCGTCCTTGCTCATGTGCTCAAGAGGCCCATAGTGG...TCCATGCTGTGCCTTAAAATAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp ATTTTGGAAAGCTATGGAGAGGGAAGGTACTTCTATTTTAAGGCACAGCATGGAAGCCAGCCCTGGCTCTaGACCTGTGGAACGAACAAA +
Preference number: 4 (lower is better)
Translates to: ILESYGEGRYFYFKAQHGSQPWL*TCGTNK
Trigger: TTTGTTCGTTCCACAGGTGCAGAGCCAGGGCTGGCT...TCCATGCTGTGCCTTAAAATAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp AGAGAACGGGCTCTGTTCTCGGCTCGGGATCACCTCCCAAGTGTACAATATAAATCATTCCATTCCTTCTaGCACTCATCTTCCGTATAC +
Preference number: 4 (lower is better)
Translates to: RERALFSARDHLPSVQYKSFHSF*HSSSVY
Trigger: GTATACGGAAGATGAGTGGCAGAAGGAATGGAATGA...TTTATATTGTACACTTGGGAGGTGATCCCGAGCCGAGAACAGAGCCCGTTCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp ATTTTGGAAAGCTATGGAGAGGGAAGGTACTTCTATTTTAAGGCACAGCATGGATGCCGAGAGAACTGCTaGCAACCGACTCCTTGTCTG +
Preference number: 4 (lower is better)
Translates to: ILESYGEGRYFYFKAQHGCRENC*QPTPCL
Trigger: CAGACAAGGAGTCGGTTGGCAGCAGTTCTCTCGGCA...TCCATGCTGTGCCTTAAAATAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACCAGCAGCCTCTTCCTTaGCACCCTTCCAGCTCTTCA +
Preference number: 4 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNQQPLP*HPSSSS
Trigger: TGAAGAGCTGGAAGGGTGGCAAGGAAGAGGCTGCTG...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp ATTTTGGAAAGCTATGGAGAGGGAAGGTACTTCTATTTTAAGGCACAGCATGGAGCCCTCCCCTTGCATTaGGATCCTCATAGTGCTCAG +
Preference number: 4 (lower is better)
Translates to: ILESYGEGRYFYFKAQHGALPLH*DPHSAQ
Trigger: CTGAGCACTATGAGGATCGCAATGCAAGGGGAGGGC...TCCATGCTGTGCCTTAAAATAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp GGTTGCTATGAGTTGGAGGCTAACCTGGGTTATATAGCAAGTACCAGACTGGCTCAACAAAAATGTACTTaGCCTCCCCTTGCATTGCGA +
Preference number: 4 (lower is better)
Translates to: GCYELEANLGYIASTRLAQQKCT*PPLALR
Trigger: TCGCAATGCAAGGGGAGGGCAAGTACATTTTTGTTG...AGCCAGTCTGGTACTTGCTATATAACCCAGGTTAGCCTCCAACTCATAGCAACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp CTTGCTTATTCTGAACAAGTTGATCTTTGTTTTGTTTCCCAGACGTTCCTTAACGTCGAGAAGGGCGAGTaGGCTCTCTATCCGAACCCC +
Preference number: 4 (lower is better)
Translates to: LAYSEQVDLCFVSQTFLNVEKGE*ALYPNP
Trigger: GGGGTTCGGATAGAGAGCCCACTCGCCCTTCTCGAC...GTTAAGGAACGTCTGGGAAACAAAACAAAGATCAACTTGTTCAGAATAAGCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACGCAACCAGCATGGACTaGTCAATGAGGTCTCGCTCT +
Preference number: 4 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNATSMD*SMRSRS
Trigger: AGAGCGAGACCTCATTGAGCAGTCCATGCTGGTTGC...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACTGTGAACTCCATCTTTaGCTGGCTCCAGAGCTGGGA +
Preference number: 4 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNCELHL*LAPELG
Trigger: TCCCAGCTCTGGAGCCAGGCAAAGATGGAGTTCACA...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp ATTTTGGAAAGCTATGGAGAGGGAAGGTACTTCTATTTTAAGGCACAGCATGGACTTTGCATCACCTCCTaGCTATACTTGCTCCCGCCA +
Preference number: 4 (lower is better)
Translates to: ILESYGEGRYFYFKAQHGLCITS*LYLLPP
Trigger: TGGCGGGAGCAAGTATAGCCAGGAGGTGATGCAAAG...TCCATGCTGTGCCTTAAAATAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACACTGTTCAAAATCACTaGGGGCAGCACTCACATCCC +
Preference number: 4 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNTVQNH*GQHSHP
Trigger: GGGATGTGAGTGCTGCCCTCAGTGATTTTGAACAGT...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp CTTGCTTATTCTGAACAAGTTGATCTTTGTTTTGTTTCCCAGACGTTCCTTAACAACCGACTCCTTGTCTaGCTCCCCAGACTCAGGAGT +
Preference number: 4 (lower is better)
Translates to: LAYSEQVDLCFVSQTFLNNRLLV*LPRLRS
Trigger: ACTCCTGAGTCTGGGGAGTCAGACAAGGAGTCGGTT...GTTAAGGAACGTCTGGGAAACAAAACAAAGATCAACTTGTTCAGAATAAGCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp CTTGCTTATTCTGAACAAGTTGATCTTTGTTTTGTTTCCCAGACGTTCCTTAACAGCCAGCCCTGGCTCTaGACCTGTGGAACGAACAAA +
Preference number: 4 (lower is better)
Translates to: LAYSEQVDLCFVSQTFLNSQPWL*TCGTNK
Trigger: TTTGTTCGTTCCACAGGTGCAGAGCCAGGGCTGGCT...GTTAAGGAACGTCTGGGAAACAAAACAAAGATCAACTTGTTCAGAATAAGCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp ATTTTGGAAAGCTATGGAGAGGGAAGGTACTTCTATTTTAAGGCACAGCATGGACTTCTGCTTCTGCTCTaGCAGGAATCTTTCCTCAGC +
Preference number: 4 (lower is better)
Translates to: ILESYGEGRYFYFKAQHGLLLLL*QESFLS
Trigger: GCTGAGGAAAGATTCCTGGCAGAGCAGAAGCAGAAG...TCCATGCTGTGCCTTAAAATAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp ATTTTGGAAAGCTATGGAGAGGGAAGGTACTTCTATTTTAAGGCACAGCATGGACTCTCAACCTCCTTCTaGTTCTGCTCTGCCAGGAAT +
Preference number: 4 (lower is better)
Translates to: ILESYGEGRYFYFKAQHGLSTSF*FCSARN
Trigger: ATTCCTGGCAGAGCAGAAGCAGAAGGAGGTTGAGAG...TCCATGCTGTGCCTTAAAATAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp CTTGCTTATTCTGAACAAGTTGATCTTTGTTTTGTTTCCCAGACGTTCCTTAACCAGAGTCCCTCAGCATaGTGTCTGCCACGACCACTA +
Preference number: 4 (lower is better)
Translates to: LAYSEQVDLCFVSQTFLNQSPSA*CLPRPL
Trigger: TAGTGGTCGTGGCAGACACCATGCTGAGGGACTCTG...GTTAAGGAACGTCTGGGAAACAAAACAAAGATCAACTTGTTCAGAATAAGCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACGGCTGGAACCTCCAATaGCAGATAGATCCCTCCAAA +
Preference number: 4 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNGWNLQ*QIDPSK
Trigger: TTTGGAGGGATCTATCTGCCATTGGAGGTTCCAGCC...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp ATTTTGGAAAGCTATGGAGAGGGAAGGTACTTCTATTTTAAGGCACAGCATGGAGGCTGGAACCTCCAATaGCAGATAGATCCCTCCAAA +
Preference number: 4 (lower is better)
Translates to: ILESYGEGRYFYFKAQHGGWNLQ*QIDPSK
Trigger: TTTGGAGGGATCTATCTGCCATTGGAGGTTCCAGCC...TCCATGCTGTGCCTTAAAATAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp CTTGCTTATTCTGAACAAGTTGATCTTTGTTTTGTTTCCCAGACGTTCCTTAACATCGGTGACACTGGCTaGCTGGAACCTCCAATGGCA +
Preference number: 4 (lower is better)
Translates to: LAYSEQVDLCFVSQTFLNIGDTG*LEPPMA
Trigger: TGCCATTGGAGGTTCCAGCCAGCCAGTGTCACCGAT...GTTAAGGAACGTCTGGGAAACAAAACAAAGATCAACTTGTTCAGAATAAGCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACTCACAGCTTGTTCTTTaGCGCTCTCCTTCTGCTCCA +
Preference number: 4 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNSQLVL*RSPSAP
Trigger: TGGAGCAGAAGGAGAGCGCCAAAGAACAAGCTGTGA...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp ATTTTGGAAAGCTATGGAGAGGGAAGGTACTTCTATTTTAAGGCACAGCATGGATCGGTTGTTTGCATTTaGTCTGGGTTGGGGGAAGTC +
Preference number: 4 (lower is better)
Translates to: ILESYGEGRYFYFKAQHGSVVCI*SGLGEV
Trigger: GACTTCCCCCAACCCAGACCAAATGCAAACAACCGA...TCCATGCTGTGCCTTAAAATAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp ACTGGATGGAAAGGGGATAGAGAGGCAAGGAGCTGTGTCAGATTTTTCCATTTTTCATTCCATTCCTTCTaGCACTCATCTTCCGTATAC +
Preference number: 4 (lower is better)
Translates to: TGWKGDREARSCVRFFHFSFHSF*HSSSVY
Trigger: GTATACGGAAGATGAGTGGCAGAAGGAATGGAATGA...AAAATGGAAAAATCTGACACAGCTCCTTGCCTCTCTATCCCCTTTCCATCCAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CAA 72 bp CTCTGGACACGTGCAGTGCACTCACCCCTTCTTCATTaGCATCCACAAATGAACACAGAATTCATTTGTATA +
Preference number: 4 (lower is better)
Translates to: LWTRAVHSPLLH*HPQMNTEFICI
Trigger: TATACAAATGAATTCTGTGTTCATTTGTGGATGCAAATGAAGAAGGGGTGAGTGCACTGCACGTGTCCAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CAA 72 bp ATGGGCTTGCTTATTCTGAACAAGTTGATCTTTGTTTaGTTTCCCAGACGTTCCTTAACTCCACCCCTACTC +
Preference number: 4 (lower is better)
Translates to: MGLLILNKLIFV*FPRRSLTPPLL
Trigger: GAGTAGGGGTGGAGTTAAGGAACGTCTGGGAAACAAAACAAAGATCAACTTGTTCAGAATAAGCAAGCCCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACTTCCCAGCATGGACTTaGCGCAACTGTTCAAAATCA +
Preference number: 4 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNFPAWT*RNCSKS
Trigger: TGATTTTGAACAGTTGCGTCAAGTCCATGCTGGGAA...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACCGTATACACCAGTCCTaGCTCTTTATTCTGCTGTGT +
Preference number: 4 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNRIHQS*LFILLC
Trigger: ACACAGCAGAATAAAGAGTCAGGACTGGTGTATACG...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp CTTGCTTATTCTGAACAAGTTGATCTTTGTTTTGTTTCCCAGACGTTCCTTAACCTCTCAACCTCCTTCTaGTTCTGCTCTGCCAGGAAT +
Preference number: 4 (lower is better)
Translates to: LAYSEQVDLCFVSQTFLNLSTSF*FCSARN
Trigger: ATTCCTGGCAGAGCAGAAGCAGAAGGAGGTTGAGAG...GTTAAGGAACGTCTGGGAAACAAAACAAAGATCAACTTGTTCAGAATAAGCAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACGGTGTCCATAGAAGCTaGAGTTCGGTTGTTTGCATT +
Preference number: 4 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNGVHRS*SSVVCI
Trigger: AATGCAAACAACCGAACTGCAGCTTCTATGGACACC...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp CTTGCTTATTCTGAACAAGTTGATCTTTGTTTTGTTTCCCAGACGTTCCTTAACGTGAGATCTGGAAGCTaGAAGGCACAGATGGGCATT +
Preference number: 4 (lower is better)
Translates to: LAYSEQVDLCFVSQTFLNVRSGS*KAQMGI
Trigger: AATGCCCATCTGTGCCTTCCAGCTTCCAGATCTCAC...GTTAAGGAACGTCTGGGAAACAAAACAAAGATCAACTTGTTCAGAATAAGCAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp CTTGCTTATTCTGAACAAGTTGATCTTTGTTTTGTTTCCCAGACGTTCCTTAACACTGTCTGGGAAAGGTaGCATATGATGGTAAGCCCC +
Preference number: 4 (lower is better)
Translates to: LAYSEQVDLCFVSQTFLNTVWER*HMMVSP
Trigger: GGGGCTTACCATCATATGCCACCTTTCCCAGACAGT...GTTAAGGAACGTCTGGGAAACAAAACAAAGATCAACTTGTTCAGAATAAGCAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CCA 90 bp CTTGCTTATTCTGAACAAGTTGATCTTTGTTTTGTTTCCCAGACGTTCCTTAACAACTCCATCTTTGCCTaGCTCCAGAGCTGGGATGTT +
Preference number: 4 (lower is better)
Translates to: LAYSEQVDLCFVSQTFLNNSIFA*LQSWDV
Trigger: AACATCCCAGCTCTGGAGCCAGGCAAAGATGGAGTT...GTTAAGGAACGTCTGGGAAACAAAACAAAGATCAACTTGTTCAGAATAAGCAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR GCA 90 bp CTTGCTTATTCTGAACAAGTTGATCTTTGTTTTGTTTCCCAGACGTTCCTTAACCCTGACTCTTTATTCTaGTGTGTTTGCTGCCACCTC +
Preference number: 4 (lower is better)
Translates to: LAYSEQVDLCFVSQTFLNPDSLF*CVCCHL
Trigger: GAGGTGGCAGCAAACACAGCAGAATAAAGAGTCAGG...GTTAAGGAACGTCTGGGAAACAAAACAAAGATCAACTTGTTCAGAATAAGCAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CAA 72 bp GAAGTCTTGACTAGCTTTGTTACCAAAGAGAGGTGTTaGATCATTTTTCTGACTAGGCAGAGGAAACATGCA +
Preference number: 4 (lower is better)
Translates to: EVLTSFVTKERC*IIFLTRQRKHA
Trigger: TGCATGTTTCCTCTGCCTAGTCAGAAAAATGATCAAACACCTCTCTTTGGTAACAAAGCTAGTCAAGACTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CAA 72 bp CACAGTATCTGCATGGGCTTGCTTATTCTGAACAAGTaGATCTTTGTTTTGTTTCCCAGACGTTCCTTAACT +
Preference number: 4 (lower is better)
Translates to: HSICMGLLILNK*IFVLFPRRSLT
Trigger: AGTTAAGGAACGTCTGGGAAACAAAACAAAGATCAACTTGTTCAGAATAAGCAAGCCCATGCAGATACTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CAA 72 bp AGCCATGGTCATTTCTGCTTTACTGGTCTATGGATTTaGGAAAGCTATGGAGAGGGAAGGTACTTCTATTTT +
Preference number: 4 (lower is better)
Translates to: SHGHFCFTGLWI*ESYGEGRYFYF
Trigger: AAAATAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAATCCATAGACCAGTAAAGCAGAAATGACCATGGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
3UTR CAA 72 bp GGGCACAGGAATTGTACATGGAAGCATGATAGTATTTaGTTAAACAGCTTAAGCACAGGAGGCAATACACAA +
Preference number: 4 (lower is better)
Translates to: GHRNCTWKHDSI*LNSLSTGGNTQ
Trigger: TTGTGTATTGCCTCCTGTGCTTAAGCTGTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACCACTTGAAGCAAGTTTaGTCAATTCATTCCATTCCT +
Preference number: 4 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNHLKQV*SIHSIP
Trigger: AGGAATGGAATGAATTGATCAAACTTGCTTCAAGTG...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR TCA 90 bp CTTGCTTATTCTGAACAAGTTGATCTTTGTTTTGTTTCCCAGACGTTCCTTAACCACTTGAAGCAAGTTTaGTCAATTCATTCCATTCCT +
Preference number: 4 (lower is better)
Translates to: LAYSEQVDLCFVSQTFLNHLKQV*SIHSIP
Trigger: AGGAATGGAATGAATTGATCAAACTTGCTTCAAGTG...GTTAAGGAACGTCTGGGAAACAAAACAAAGATCAACTTGTTCAGAATAAGCAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS GCA 90 bp TCTCCCGGTCTCGCTTTGACTTCTCCTTCCGCCTGCTGCCCTCGTTaGCGAGAGAACTGCTGCCAACCGACTCCTTGTCTGACTCCCCAG +
Preference number: 5 (lower is better)
Translates to: SPGLALTSPSACCPR*RENCCQPTPCLTPQ
Trigger: CTGGGGAGTCAGACAAGGAGTCGGTTGGCAGCAGTTCTCTCGGCAACGAGGGCAGCAGGCGGAAGGAGAAGTCAAAGCGAGACCGGGAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CCA 90 bp TGCCAACCGACTCCTTGTCTGACTCCCCAGACTCAGGAGTGGACCTaGGTTCATCTCCAGCTGAGGCTGTGGGGGACTCAGGCTGAGCTA +
Preference number: 5 (lower is better)
Translates to: CQPTPCLTPQTQEWT*VHLQLRLWGTQAEL
Trigger: TAGCTCAGCCTGAGTCCCCCACAGCCTCAGCTGGAGATGAACCCAGGTCCACTCCTGAGTCTGGGGAGTCAGACAAGGAGTCGGTTGGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CCA 90 bp CTGGGATGTTGTCCTGGTGGGGGTACGGTCGCCCAGGATACTGTCTaGGAAAGGTGGCATATGATGGTAAGCCCCCTACACATGGCCCCC +
Preference number: 5 (lower is better)
Translates to: LGCCPGGGTVAQDTV*ERWHMMVSPLHMAP
Trigger: GGGGGCCATGTGTAGGGGGCTTACCATCATATGCCACCTTTCCCAGACAGTATCCTGGGCGACCGTACCCCCACCAGGACAACATCCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCCCCACCCCCACCATaGGAGGAGACATGGGAGCGG +
Preference number: 5 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTPPPPP*EETWER
Trigger: CCGCTCCCATGTCTCCTCCAATGGTGGGGGTGGGGG...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS GCA 90 bp TCTTGTCCTTCTCCCGGTCTCGCTTTGACTTCTCCTTCCGCCTGCTaGCCTCGTTGCCGAGAGAACTGCTGCCAACCGACTCCTTGTCTG +
Preference number: 5 (lower is better)
Translates to: SCPSPGLALTSPSAC*PRCRENCCQPTPCL
Trigger: CAGACAAGGAGTCGGTTGGCAGCAGTTCTCTCGGCAACGAGGGCAGCAGGCGGAAGGAGAAGTCAAAGCGAGACCGGGAGAAGGACAAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS GCA 90 bp TGCTCAGGCTTTGCATCACCTCCTGGCTATACTTGCTCCCGCCATTaGCAACAGACTCAGACGGGGGCTTCTCAGACACAGGCCCATCCC +
Preference number: 5 (lower is better)
Translates to: CSGFASPPGYTCSRH*QQTQTGASQTQAHP
Trigger: GGGATGGGCCTGTGTCTGAGAAGCCCCCGTCTGAGTCTGTTGGCAATGGCGGGAGCAAGTATAGCCAGGAGGTGATGCAAAGCCTGAGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS GCA 90 bp TCTTCTTGTCCTTCTCCCGGTCTCGCTTTGACTTCTCCTTCCGCCTaGTGCCCTCGTTGCCGAGAGAACTGCTGCCAACCGACTCCTTGT +
Preference number: 5 (lower is better)
Translates to: SSCPSPGLALTSPSA*CPRCRENCCQPTPC
Trigger: ACAAGGAGTCGGTTGGCAGCAGTTCTCTCGGCAACGAGGGCAGCAGGCGGAAGGAGAAGTCAAAGCGAGACCGGGAGAAGGACAAGAAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp GGTGACTGCAGCCAGGAAGAGGGGCTCACGGTGAAGGTTTCACCTGCATTATTCCCAGCAGCCTCTTCCTaGCCACCCTTCCAGCTCTTC +
Preference number: 5 (lower is better)
Translates to: GDCSQEEGLTVKVSPALFPAASS*PPFQLF
Trigger: GAAGAGCTGGAAGGGTGGCAAGGAAGAGGCTGCTGG...GAATAATGCAGGTGAAACCTTCACCGTGAGCCCCTCTTCCTGGCTGCAGTCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp CACCCACACACACCTAGTATTTCCCTACTTTCCCTTGGGCCCTGGGATTGGGACTCCGGCTCTGGCTTTTaGGCTGGAGGAGGCCCACTA +
Preference number: 5 (lower is better)
Translates to: HPHTPSISLLSLGPWDWDSGSGF*AGGGPL
Trigger: TAGTGGGCCTCCTCCAGCCAAAAAGCCAGAGCCGGA...GTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTGTGGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp GGTGACTGCAGCCAGGAAGAGGGGCTCACGGTGAAGGTTTCACCTGCATTATTCTCCGGCTCTGGCTTTTaGGCTGGAGGAGGCCCACTA +
Preference number: 5 (lower is better)
Translates to: GDCSQEEGLTVKVSPALFSGSGF*AGGGPL
Trigger: TAGTGGGCCTCCTCCAGCCAAAAAGCCAGAGCCGGA...GAATAATGCAGGTGAAACCTTCACCGTGAGCCCCTCTTCCTGGCTGCAGTCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp GGTGACTGCAGCCAGGAAGAGGGGCTCACGGTGAAGGTTTCACCTGCATTATTCTCCAGAGCTGGGATGTaGTCCTGGTGGGGGTACGGT +
Preference number: 5 (lower is better)
Translates to: GDCSQEEGLTVKVSPALFSRAGM*SWWGYG
Trigger: ACCGTACCCCCACCAGGACAACATCCCAGCTCTGGA...GAATAATGCAGGTGAAACCTTCACCGTGAGCCCCTCTTCCTGGCTGCAGTCACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS GCA 90 bp CCTCTGGCAGGTGGAGTCCATACTAACCCACCAATTCAGACGCCCTaGCTGTTCCAAGGCAACCAGCATGGACTGCTCAATGAGGTCTCG +
Preference number: 5 (lower is better)
Translates to: PLAGGVHTNPPIQTP*LFQGNQHGLLNEVS
Trigger: CGAGACCTCATTGAGCAGTCCATGCTGGTTGCCTTGGAACAGGCAGGGCGTCTGAATTGGTGGGTTAGTATGGACTCCACCTGCCAGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
ENSMUST00000138206.8
CDS GCA 90 bp GATAGGGGCAAATGCTTCCCCTCCAGAGTCCCTCAGCATGGTGTCTaGCACGACCACTATGGGCCTCTTGAGCACATGAGCAAGGACGAA +
Preference number: 5 (lower is better)
Translates to: DRGKCFPSRVPQHGV*HDHYGPLEHMSKDE
Trigger: TTCGTCCTTGCTCATGTGCTCAAGAGGCCCATAGTGGTCGTGGCAGACACCATGCTGAGGGACTCTGGAGGGGAAGCATTTGCCCCTATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CCA 90 bp CCTTGCATTGCGATCCTCATAGTGCTCAGGCTTTGCATCACCTCCTaGCTATACTTGCTCCCGCCATTGCCAACAGACTCAGACGGGGGC +
Preference number: 5 (lower is better)
Translates to: PCIAILIVLRLCITS*LYLLPPLPTDSDGG
Trigger: GCCCCCGTCTGAGTCTGTTGGCAATGGCGGGAGCAAGTATAGCCAGGAGGTGATGCAAAGCCTGAGCACTATGAGGATCGCAATGCAAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCAGCAGCCTCTTCCTaGCCACCCTTCCAGCTCTTC +
Preference number: 5 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTPAASS*PPFQLF
Trigger: GAAGAGCTGGAAGGGTGGCAAGGAAGAGGCTGCTGG...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp CACCCACACACACCTAGTATTTCCCTACTTTCCCTTGGGCCCTGGGATTGGGACTACTTGCTCCCGCCATaGCCAACAGACTCAGACGGG +
Preference number: 5 (lower is better)
Translates to: HPHTPSISLLSLGPWDWDYLLPP*PTDSDG
Trigger: CCCGTCTGAGTCTGTTGGCAATGGCGGGAGCAAGTA...GTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTGTGGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp GGTGACTGCAGCCAGGAAGAGGGGCTCACGGTGAAGGTTTCACCTGCATTATTCTACTTGCTCCCGCCATaGCCAACAGACTCAGACGGG +
Preference number: 5 (lower is better)
Translates to: GDCSQEEGLTVKVSPALFYLLPP*PTDSDG
Trigger: CCCGTCTGAGTCTGTTGGCAATGGCGGGAGCAAGTA...GAATAATGCAGGTGAAACCTTCACCGTGAGCCCCTCTTCCTGGCTGCAGTCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACATCCAGAGCTGGGATGTaGTCCTGGTGGGGGTACGGT +
Preference number: 5 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTSRAGM*SWWGYG
Trigger: ACCGTACCCCCACCAGGACAACATCCCAGCTCTGGA...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAGAATCTGCTCTCTTCTaGTCCTTCTCCCGGTCTCGC +
Preference number: 5 (lower is better)
Translates to: CRPGWPRTQKSAWQVLGLESALF*SFSRSR
Trigger: GCGAGACCGGGAGAAGGACAAGAAGAGAGCAGATTC...TAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp CACCCACACACACCTAGTATTTCCCTACTTTCCCTTGGGCCCTGGGATTGGGACACCTCCTGGCTATACTaGCTCCCGCCATTGCCAACA +
Preference number: 5 (lower is better)
Translates to: HPHTPSISLLSLGPWDWDTSWLY*LPPLPT
Trigger: TGTTGGCAATGGCGGGAGCAAGTATAGCCAGGAGGT...GTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTGTGGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS GCA 90 bp TACTTGCCCTCCCCTTGCATTGCGATCCTCATAGTGCTCAGGCTTTaGATCACCTCCTGGCTATACTTGCTCCCGCCATTGCCAACAGAC +
Preference number: 5 (lower is better)
Translates to: YLPSPCIAILIVLRL*ITSWLYLLPPLPTD
Trigger: GTCTGTTGGCAATGGCGGGAGCAAGTATAGCCAGGAGGTGATGCAAAGCCTGAGCACTATGAGGATCGCAATGCAAGGGGAGGGCAAGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CCA 90 bp ATGAAGCTGCGGAAGTCTTCTTTGTACACAGTGAGATCTGGAAGCTaGAAGGCACAGATGGGCATTTCCAGGGGGTGCTCACTGCTCCCC +
Preference number: 5 (lower is better)
Translates to: MKLRKSSLYTVRSGS*KAQMGISRGCSLLP
Trigger: GGGGAGCAGTGAGCACCCCCTGGAAATGCCCATCTGTGCCTTCCAGCTTCCAGATCTCACTGTGTACAAAGAAGACTTCCGCAGCTTCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
ENSMUST00000138206.8
CDS-3UTR CAA 90 bp TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAATCACAGCTTGTTCTTaGGCGCTCTCCTTCTGCTCC +
Preference number: 5 (lower is better)
Translates to: CRPGWPRTQKSAWQVLGLITACS*ALSFCS
Trigger: GGAGCAGAAGGAGAGCGCCAAAGAACAAGCTGTGAT...TAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACAACCTCCTGGCTATACTaGCTCCCGCCATTGCCAACA +
Preference number: 5 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTTSWLY*LPPLPT
Trigger: TGTTGGCAATGGCGGGAGCAAGTATAGCCAGGAGGT...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp GGTGACTGCAGCCAGGAAGAGGGGCTCACGGTGAAGGTTTCACCTGCATTATTCCTGCAGTTCGGTTGTTaGCATTTGGTCTGGGTTGGG +
Preference number: 5 (lower is better)
Translates to: GDCSQEEGLTVKVSPALFLQFGC*HLVWVG
Trigger: CCCAACCCAGACCAAATGCAAACAACCGAACTGCAG...GAATAATGCAGGTGAAACCTTCACCGTGAGCCCCTCTTCCTGGCTGCAGTCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS TCA 90 bp GTACTCCCTCCACTAAAGGGTGGGGATAGGTTCCCAGCATGGACTTaGCGCAACTGTTCAAAATCACTGAGGGCAGCACTCACATCCCAG +
Preference number: 5 (lower is better)
Translates to: VLPPLKGGDRFPAWT*RNCSKSLRAALTSQ
Trigger: CTGGGATGTGAGTGCTGCCCTCAGTGATTTTGAACAGTTGCGTCAAGTCCATGCTGGGAACCTATCCCCACCCTTTAGTGGAGGGAGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
ENSMUST00000132980.8
ENSMUST00000138206.8
CDS TCA 90 bp CAGAGTCCCTCAGCATGGTGTCTGCCACGACCACTATGGGCCTCTTaGGCACATGAGCAAGGACGAAGACATGGAATTCCTCTAGGCTTT +
Preference number: 5 (lower is better)
Translates to: QSPSAWCLPRPLWAS*AHEQGRRHGIPLGF
Trigger: AAAGCCTAGAGGAATTCCATGTCTTCGTCCTTGCTCATGTGCTCAAGAGGCCCATAGTGGTCGTGGCAGACACCATGCTGAGGGACTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS GCA 90 bp CACCAATTCAGACGCCCTGCCTGTTCCAAGGCAACCAGCATGGACTaGTCAATGAGGTCTCGCTCTATGAAGCTGCGGAAGTCTTCTTTG +
Preference number: 5 (lower is better)
Translates to: HQFRRPACSKATSMD*SMRSRSMKLRKSSL
Trigger: CAAAGAAGACTTCCGCAGCTTCATAGAGCGAGACCTCATTGAGCAGTCCATGCTGGTTGCCTTGGAACAGGCAGGGCGTCTGAATTGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
ENSMUST00000138206.8
CDS CCA 90 bp TCTTTCCTTCTAGAAGATCTCGAGCCAGCCCTGGCTCTGCACCTGTaGAACGAACAAAATCCGACAGGACAGCATCCATGTCCAGGGTCA +
Preference number: 5 (lower is better)
Translates to: SFLLEDLEPALALHL*NEQNPTGQHPCPGS
Trigger: TGACCCTGGACATGGATGCTGTCCTGTCGGATTTTGTTCGTTCCACAGGTGCAGAGCCAGGGCTGGCTCGAGATCTTCTAGAAGGAAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
ENSMUST00000132980.8
ENSMUST00000138206.8
CDS-3UTR CAA 90 bp CACCCACACACACCTAGTATTTCCCTACTTTCCCTTGGGCCCTGGGATTGGGACCTGGCCAATCGGACATaGTCATTGTCATCTTTGCCC +
Preference number: 5 (lower is better)
Translates to: HPHTPSISLLSLGPWDWDLANRT*SLSSLP
Trigger: GGGCAAAGATGACAATGACAATGTCCGATTGGCCAG...GTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTGTGGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGTTGCTGCCCAAGGTTTaGCCAAAGCTGCCCAGTTTG +
Preference number: 5 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRLLPKV*PKLPSL
Trigger: CAAACTGGGCAGCTTTGGCAAAACCTTGGGCAGCAA...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp AGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCTCAATGCTTCTTGCTGCCCAAGGTTTaGCCAAAGCTGCCCAGTTTG +
Preference number: 5 (lower is better)
Translates to: RSPKDCWSPPPHHTPQCFLLPKV*PKLPSL
Trigger: CAAACTGGGCAGCTTTGGCAAAACCTTGGGCAGCAA...GAAGCATTGAGGTGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp ACGCCTGATTGTAGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACTGCAGTTCGGTTGTTaGCATTTGGTCTGGGTTGGG +
Preference number: 5 (lower is better)
Translates to: TPDCRSPKDCWSPPPHHTLQFGC*HLVWVG
Trigger: CCCAACCCAGACCAAATGCAAACAACCGAACTGCAG...TGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCTACAATCAGGCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp GGTGACTGCAGCCAGGAAGAGGGGCTCACGGTGAAGGTTTCACCTGCATTATTCGAAGCTGCAGTTCGGTaGTTTGCATTTGGTCTGGGT +
Preference number: 5 (lower is better)
Translates to: GDCSQEEGLTVKVSPALFEAAVR*FAFGLG
Trigger: ACCCAGACCAAATGCAAACAACCGAACTGCAGCTTC...GAATAATGCAGGTGAAACCTTCACCGTGAGCCCCTCTTCCTGGCTGCAGTCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAGAAGCTGCAGTTCGGTaGTTTGCATTTGGTCTGGGT +
Preference number: 5 (lower is better)
Translates to: CRPGWPRTQKSAWQVLGLEAAVR*FAFGLG
Trigger: ACCCAGACCAAATGCAAACAACCGAACTGCAGCTTC...TAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS GCA 90 bp TGGCCCATCTTCAGGGTTCCAACAAAAATGTACTTGCCCTCCCCTTaGATTGCGATCCTCATAGTGCTCAGGCTTTGCATCACCTCCTGG +
Preference number: 5 (lower is better)
Translates to: WPIFRVPTKMYLPSP*IAILIVLRLCITSW
Trigger: CCAGGAGGTGATGCAAAGCCTGAGCACTATGAGGATCGCAATGCAAGGGGAGGGCAAGTACATTTTTGTTGGAACCCTGAAGATGGGCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CCA 90 bp TCGCTCTATGAAGCTGCGGAAGTCTTCTTTGTACACAGTGAGATCTaGAAGCTGGAAGGCACAGATGGGCATTTCCAGGGGGTGCTCACT +
Preference number: 5 (lower is better)
Translates to: SLYEAAEVFFVHSEI*KLEGTDGHFQGVLT
Trigger: AGTGAGCACCCCCTGGAAATGCCCATCTGTGCCTTCCAGCTTCCAGATCTCACTGTGTACAAAGAAGACTTCCGCAGCTTCATAGAGCGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
ENSMUST00000138206.8
CDS-3UTR CAA 90 bp ATTTTGGAAAGCTATGGAGAGGGAAGGTACTTCTATTTTAAGGCACAGCATGGACCCCCACCCCCACCATaGGAGGAGACATGGGAGCGG +
Preference number: 5 (lower is better)
Translates to: ILESYGEGRYFYFKAQHGPPPPP*EETWER
Trigger: CCGCTCCCATGTCTCCTCCAATGGTGGGGGTGGGGG...TCCATGCTGTGCCTTAAAATAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACCCCCCACCCCCACCATaGGAGGAGACATGGGAGCGG +
Preference number: 5 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNPPPPP*EETWER
Trigger: CCGCTCCCATGTCTCCTCCAATGGTGGGGGTGGGGG...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
52% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGCTGGCCAATCGGACATaGTCATTGTCATCTTTGCCC +
Preference number: 5 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRLANRT*SLSSLP
Trigger: GGGCAAAGATGACAATGACAATGTCCGATTGGCCAG...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp AGAGAACGGGCTCTGTTCTCGGCTCGGGATCACCTCCCAAGTGTACAATATAAAGAATCTGCTCTCTTCTaGTCCTTCTCCCGGTCTCGC +
Preference number: 5 (lower is better)
Translates to: RERALFSARDHLPSVQYKESALF*SFSRSR
Trigger: GCGAGACCGGGAGAAGGACAAGAAGAGAGCAGATTC...TTTATATTGTACACTTGGGAGGTGATCCCGAGCCGAGAACAGAGCCCGTTCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp TGTTTCAAACAGTCTAGCCAAACATCTGGGCTCCTCCACCCCTTCTCAGGTGCATTGCTGCCCAAGGTTTaGCCAAAGCTGCCCAGTTTG +
Preference number: 5 (lower is better)
Translates to: CFKQSSQTSGLLHPFSGALLPKV*PKLPSL
Trigger: CAAACTGGGCAGCTTTGGCAAAACCTTGGGCAGCAA...TGCACCTGAGAAGGGGTGGAGGAGCCCAGATGTTTGGCTAGACTGTTTGAAACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp GGTTGCTATGAGTTGGAGGCTAACCTGGGTTATATAGCAAGTACCAGACTGGCTTACTTGCTCCCGCCATaGCCAACAGACTCAGACGGG +
Preference number: 5 (lower is better)
Translates to: GCYELEANLGYIASTRLAYLLPP*PTDSDG
Trigger: CCCGTCTGAGTCTGTTGGCAATGGCGGGAGCAAGTA...AGCCAGTCTGGTACTTGCTATATAACCCAGGTTAGCCTCCAACTCATAGCAACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS TCA 90 bp CTCAGCATGGTGTCTGCCACGACCACTATGGGCCTCTTGAGCACATaGGCAAGGACGAAGACATGGAATTCCTCTAGGCTTTCATATACC +
Preference number: 5 (lower is better)
Translates to: LSMVSATTTMGLLST*ARTKTWNSSRLSYT
Trigger: GGTATATGAAAGCCTAGAGGAATTCCATGTCTTCGTCCTTGCTCATGTGCTCAAGAGGCCCATAGTGGTCGTGGCAGACACCATGCTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS GCA 90 bp AACAGCAAGAGCACAAGTTGTTTGTCTCAGGGTGTCCATAGAAGCTaGAGTTCGGTTGTTTGCATTTGGTCTGGGTTGGGGGAAGTCCCC +
Preference number: 5 (lower is better)
Translates to: NSKSTSCLSQGVHRS*SSVVCIWSGLGEVP
Trigger: GGGGACTTCCCCCAACCCAGACCAAATGCAAACAACCGAACTGCAGCTTCTATGGACACCCTGAGACAAACAACTTGTGCTCTTGCTGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp AGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCTCAATGCTTCGTTCCCAGCATGGACTaGACGCAACTGTTCAAAATC +
Preference number: 5 (lower is better)
Translates to: RSPKDCWSPPPHHTPQCFVPSMD*TQLFKI
Trigger: GATTTTGAACAGTTGCGTCAAGTCCATGCTGGGAAC...GAAGCATTGAGGTGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGCTGCGGAAGTCTTCTTaGTACACAGTGAGATCTGGA +
Preference number: 5 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRLRKSS*YTVRSG
Trigger: TCCAGATCTCACTGTGTACAAAGAAGACTTCCGCAG...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp AGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCTCAATGCTTCCTGCGGAAGTCTTCTTaGTACACAGTGAGATCTGGA +
Preference number: 5 (lower is better)
Translates to: RSPKDCWSPPPHHTPQCFLRKSS*YTVRSG
Trigger: TCCAGATCTCACTGTGTACAAAGAAGACTTCCGCAG...GAAGCATTGAGGTGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp AGAGAACGGGCTCTGTTCTCGGCTCGGGATCACCTCCCAAGTGTACAATATAAAATCACAGCTTGTTCTTaGGCGCTCTCCTTCTGCTCC +
Preference number: 5 (lower is better)
Translates to: RERALFSARDHLPSVQYKITACS*ALSFCS
Trigger: GGAGCAGAAGGAGAGCGCCAAAGAACAAGCTGTGAT...TTTATATTGTACACTTGGGAGGTGATCCCGAGCCGAGAACAGAGCCCGTTCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGAATCGGACATTGTCATaGTCATCTTTGCCCCACTCC +
Preference number: 5 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRNRTLS*SSLPHS
Trigger: GGAGTGGGGCAAAGATGACAATGACAATGTCCGATT...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp CACCCACACACACCTAGTATTTCCCTACTTTCCCTTGGGCCCTGGGATTGGGACAAGAGCACAAGTTGTTaGTCTCAGGGTGTCCATAGA +
Preference number: 5 (lower is better)
Translates to: HPHTPSISLLSLGPWDWDKSTSC*SQGVHR
Trigger: TCTATGGACACCCTGAGACAAACAACTTGTGCTCTT...GTCCCAATCCCAGGGCCCAAGGGAAAGTAGGGAAATACTAGGTGTGTGTGGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp TGTTTCAAACAGTCTAGCCAAACATCTGGGCTCCTCCACCCCTTCTCAGGTGCACAGCAAGAGCACAAGTaGTTTGTCTCAGGGTGTCCA +
Preference number: 5 (lower is better)
Translates to: CFKQSSQTSGLLHPFSGAQQEHK*FVSGCP
Trigger: TGGACACCCTGAGACAAACAACTTGTGCTCTTGCTG...TGCACCTGAGAAGGGGTGGAGGAGCCCAGATGTTTGGCTAGACTGTTTGAAACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS GCA 90 bp TCGGAGCTCTCCACTCCACCACCACTGGCTCCGTTGGAACCCAGATaGATTCTGGGTTCACTTGAAGCAAGTTTGATCAATTCATTCCAT +
Preference number: 5 (lower is better)
Translates to: SELSTPPPLAPLEPR*ILGSLEASLINSFH
Trigger: ATGGAATGAATTGATCAAACTTGCTTCAAGTGAACCCAGAATGCATCTGGGTTCCAACGGAGCCAGTGGTGGTGGAGTGGAGAGCTCCGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp CCATCAACACAGGGGCTGGGTCCTGATGAGCCAGAGTTGAGCTTAACTTTCTTTCATAGTGCTCAGGCTTaGCATCACCTCCTGGCTATA +
Preference number: 5 (lower is better)
Translates to: PSTQGLGPDEPELSLTFFHSAQA*HHLLAI
Trigger: TATAGCCAGGAGGTGATGCAAAGCCTGAGCACTATG...AAAGAAAGTTAAGCTCAACTCTGGCTCATCAGGACCCAGCCCCTGTGTTGATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp GGTTGCTATGAGTTGGAGGCTAACCTGGGTTATATAGCAAGTACCAGACTGGCTCTGCAGTTCGGTTGTTaGCATTTGGTCTGGGTTGGG +
Preference number: 5 (lower is better)
Translates to: GCYELEANLGYIASTRLALQFGC*HLVWVG
Trigger: CCCAACCCAGACCAAATGCAAACAACCGAACTGCAG...AGCCAGTCTGGTACTTGCTATATAACCCAGGTTAGCCTCCAACTCATAGCAACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp AGAAGTCCTAAAGACTGCTGGTCACCACCACCCCACCACACACCTCAATGCTTCAAGAGCACAAGTTGTTaGTCTCAGGGTGTCCATAGA +
Preference number: 5 (lower is better)
Translates to: RSPKDCWSPPPHHTPQCFKSTSC*SQGVHR
Trigger: TCTATGGACACCCTGAGACAAACAACTTGTGCTCTT...GAAGCATTGAGGTGTGTGGTGGGGTGGTGGTGACCAGCAGTCTTTAGGACTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGAAGAGCACAAGTTGTTaGTCTCAGGGTGTCCATAGA +
Preference number: 5 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRKSTSC*SQGVHR
Trigger: TCTATGGACACCCTGAGACAAACAACTTGTGCTCTT...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS GCA 90 bp CATCTTCAGGGTTCCAACAAAAATGTACTTGCCCTCCCCTTGCATTaGGATCCTCATAGTGCTCAGGCTTTGCATCACCTCCTGGCTATA +
Preference number: 5 (lower is better)
Translates to: HLQGSNKNVLALPLH*DPHSAQALHHLLAI
Trigger: TATAGCCAGGAGGTGATGCAAAGCCTGAGCACTATGAGGATCGCAATGCAAGGGGAGGGCAAGTACATTTTTGTTGGAACCCTGAAGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp TGTTTCAAACAGTCTAGCCAAACATCTGGGCTCCTCCACCCCTTCTCAGGTGCAATGTTCTTCTTAAGCTaGCTGCCCAAGGTTTTGCCA +
Preference number: 5 (lower is better)
Translates to: CFKQSSQTSGLLHPFSGAMFFLS*LPKVLP
Trigger: TGGCAAAACCTTGGGCAGCAAGCTTAAGAAGAACAT...TGCACCTGAGAAGGGGTGGAGGAGCCCAGATGTTTGGCTAGACTGTTTGAAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp ATTTTGGAAAGCTATGGAGAGGGAAGGTACTTCTATTTTAAGGCACAGCATGGACCAGCAGCCTCTTCCTaGCCACCCTTCCAGCTCTTC +
Preference number: 5 (lower is better)
Translates to: ILESYGEGRYFYFKAQHGPAASS*PPFQLF
Trigger: GAAGAGCTGGAAGGGTGGCAAGGAAGAGGCTGCTGG...TCCATGCTGTGCCTTAAAATAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACTCCGGCTCTGGCTTTTaGGCTGGAGGAGGCCCACTA +
Preference number: 5 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNSGSGF*AGGGPL
Trigger: TAGTGGGCCTCCTCCAGCCAAAAAGCCAGAGCCGGA...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp ATTTTGGAAAGCTATGGAGAGGGAAGGTACTTCTATTTTAAGGCACAGCATGGATCCAGAGCTGGGATGTaGTCCTGGTGGGGGTACGGT +
Preference number: 5 (lower is better)
Translates to: ILESYGEGRYFYFKAQHGSRAGM*SWWGYG
Trigger: ACCGTACCCCCACCAGGACAACATCCCAGCTCTGGA...TCCATGCTGTGCCTTAAAATAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp GGTTGCTATGAGTTGGAGGCTAACCTGGGTTATATAGCAAGTACCAGACTGGCTCAGCAAGAGCACAAGTaGTTTGTCTCAGGGTGTCCA +
Preference number: 5 (lower is better)
Translates to: GCYELEANLGYIASTRLAQQEHK*FVSGCP
Trigger: TGGACACCCTGAGACAAACAACTTGTGCTCTTGCTG...AGCCAGTCTGGTACTTGCTATATAACCCAGGTTAGCCTCCAACTCATAGCAACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp GGTTGCTATGAGTTGGAGGCTAACCTGGGTTATATAGCAAGTACCAGACTGGCTGTTCCCAGCATGGACTaGACGCAACTGTTCAAAATC +
Preference number: 5 (lower is better)
Translates to: GCYELEANLGYIASTRLAVPSMD*TQLFKI
Trigger: GATTTTGAACAGTTGCGTCAAGTCCATGCTGGGAAC...AGCCAGTCTGGTACTTGCTATATAACCCAGGTTAGCCTCCAACTCATAGCAACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp ACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCAAGTGCTGGGATTAAAGGTTCACTTGAAGCAAGTTaGATCAATTCATTCCATTCC +
Preference number: 5 (lower is better)
Translates to: TRLASNSEIRLASAGIKGSLEAS*INSFHS
Trigger: GGAATGGAATGAATTGATCAAACTTGCTTCAAGTGA...ACCTTTAATCCCAGCACTTGCCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp GGTTGCTATGAGTTGGAGGCTAACCTGGGTTATATAGCAAGTACCAGACTGGCTAATCGGACATTGTCATaGTCATCTTTGCCCCACTCC +
Preference number: 5 (lower is better)
Translates to: GCYELEANLGYIASTRLANRTLS*SSLPHS
Trigger: GGAGTGGGGCAAAGATGACAATGACAATGTCCGATT...AGCCAGTCTGGTACTTGCTATATAACCCAGGTTAGCCTCCAACTCATAGCAACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp GTTTGGAGGTCAGCCCTCTGGTGTACTGGCTTTAAGTTGGGGATGGTACAGAGGTCACTTGAAGCAAGTTaGATCAATTCATTCCATTCC +
Preference number: 5 (lower is better)
Translates to: VWRSALWCTGFKLGMVQRSLEAS*INSFHS
Trigger: GGAATGGAATGAATTGATCAAACTTGCTTCAAGTGA...CCTCTGTACCATCCCCAACTTAAAGCCAGTACACCAGAGGGCTGACCTCCAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACACCTCCTGGCTATACTaGCTCCCGCCATTGCCAACA +
Preference number: 5 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNTSWLY*LPPLPT
Trigger: TGTTGGCAATGGCGGGAGCAAGTATAGCCAGGAGGT...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp TGTTTCAAACAGTCTAGCCAAACATCTGGGCTCCTCCACCCCTTCTCAGGTGCATCACTTGAAGCAAGTTaGATCAATTCATTCCATTCC +
Preference number: 5 (lower is better)
Translates to: CFKQSSQTSGLLHPFSGASLEAS*INSFHS
Trigger: GGAATGGAATGAATTGATCAAACTTGCTTCAAGTGA...TGCACCTGAGAAGGGGTGGAGGAGCCCAGATGTTTGGCTAGACTGTTTGAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp ATTTTGGAAAGCTATGGAGAGGGAAGGTACTTCTATTTTAAGGCACAGCATGGAATCACAGCTTGTTCTTaGGCGCTCTCCTTCTGCTCC +
Preference number: 5 (lower is better)
Translates to: ILESYGEGRYFYFKAQHGITACS*ALSFCS
Trigger: GGAGCAGAAGGAGAGCGCCAAAGAACAAGCTGTGAT...TCCATGCTGTGCCTTAAAATAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACCTGGCCAATCGGACATaGTCATTGTCATCTTTGCCC +
Preference number: 5 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNLANRT*SLSSLP
Trigger: GGGCAAAGATGACAATGACAATGTCCGATTGGCCAG...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp ACTGGATGGAAAGGGGATAGAGAGGCAAGGAGCTGTGTCAGATTTTTCCATTTTATGTTCTTCTTAAGCTaGCTGCCCAAGGTTTTGCCA +
Preference number: 5 (lower is better)
Translates to: TGWKGDREARSCVRFFHFMFFLS*LPKVLP
Trigger: TGGCAAAACCTTGGGCAGCAAGCTTAAGAAGAACAT...AAAATGGAAAAATCTGACACAGCTCCTTGCCTCTCTATCCCCTTTCCATCCAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACCATAGTGCTCAGGCTTaGCATCACCTCCTGGCTATA +
Preference number: 5 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNHSAQA*HHLLAI
Trigger: TATAGCCAGGAGGTGATGCAAAGCCTGAGCACTATG...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp ATTTTGGAAAGCTATGGAGAGGGAAGGTACTTCTATTTTAAGGCACAGCATGGACATAGTGCTCAGGCTTaGCATCACCTCCTGGCTATA +
Preference number: 5 (lower is better)
Translates to: ILESYGEGRYFYFKAQHGHSAQA*HHLLAI
Trigger: TATAGCCAGGAGGTGATGCAAAGCCTGAGCACTATG...TCCATGCTGTGCCTTAAAATAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp ATTTTGGAAAGCTATGGAGAGGGAAGGTACTTCTATTTTAAGGCACAGCATGGACCAACAAAAATGTACTaGCCCTCCCCTTGCATTGCG +
Preference number: 5 (lower is better)
Translates to: ILESYGEGRYFYFKAQHGPTKMY*PSPCIA
Trigger: CGCAATGCAAGGGGAGGGCAAGTACATTTTTGTTGG...TCCATGCTGTGCCTTAAAATAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACGAAGCTGCAGTTCGGTaGTTTGCATTTGGTCTGGGT +
Preference number: 5 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNEAAVR*FAFGLG
Trigger: ACCCAGACCAAATGCAAACAACCGAACTGCAGCTTC...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACCAGCAAGAGCACAAGTaGTTTGTCTCAGGGTGTCCA +
Preference number: 5 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNQQEHK*FVSGCP
Trigger: TGGACACCCTGAGACAAACAACTTGTGCTCTTGCTG...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS GCA 90 bp CTGGGTTCACTTGAAGCAAGTTTGATCAATTCATTCCATTCCTTCTaGCACTCATCTTCCGTATACACCAGTCCTGACTCTTTATTCTGC +
Preference number: 5 (lower is better)
Translates to: LGSLEASLINSFHSF*HSSSVYTSPDSLFC
Trigger: GCAGAATAAAGAGTCAGGACTGGTGTATACGGAAGATGAGTGGCAGAAGGAATGGAATGAATTGATCAAACTTGCTTCAAGTGAACCCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp GGAAGGAGAGGGCACAGGAATTGTACATGGAAGCATGATAGTATTTTGTTAAACCTGCGGAAGTCTTCTTaGTACACAGTGAGATCTGGA +
Preference number: 5 (lower is better)
Translates to: GRRGHRNCTWKHDSILLNLRKSS*YTVRSG
Trigger: TCCAGATCTCACTGTGTACAAAGAAGACTTCCGCAG...GTTTAACAAAATACTATCATGCTTCCATGTACAATTCCTGTGCCCTCTCCTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS-3UTR CAA 90 bp ATTTTGGAAAGCTATGGAGAGGGAAGGTACTTCTATTTTAAGGCACAGCATGGAATGTTCTTCTTAAGCTaGCTGCCCAAGGTTTTGCCA +
Preference number: 5 (lower is better)
Translates to: ILESYGEGRYFYFKAQHGMFFLS*LPKVLP
Trigger: TGGCAAAACCTTGGGCAGCAAGCTTAAGAAGAACAT...TCCATGCTGTGCCTTAAAATAGAAGTACCTTCCCTCTCCATAGCTTTCCAAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CCA 72 bp AGAAGGCCATCGCCTTGGGCTCTGCGGGGGAGTCACTaGGCTGGTCCTCCCCACCGTCCGGCTCTGGCTTTT +
Preference number: 6 (lower is better)
Translates to: RRPSPWALRGSH*AGPPHRPALAF
Trigger: AAAAGCCAGAGCCGGACGGTGGGGAGGACCAGCCCAGTGACTCCCCCGCAGAGCCCAAGGCGATGGCCTTCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS GCA 72 bp CCTTCCGCCTGCTGCCCTCGTTGCCGAGAGAACTGCTaGCAACCGACTCCTTGTCTGACTCCCCAGACTCAG +
Preference number: 6 (lower is better)
Translates to: PSACCPRCRENC*QPTPCLTPQTQ
Trigger: CTGAGTCTGGGGAGTCAGACAAGGAGTCGGTTGGCAGCAGTTCTCTCGGCAACGAGGGCAGCAGGCGGAAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS GCA 72 bp CCTTCTCCCGGTCTCGCTTTGACTTCTCCTTCCGCCTaGTGCCCTCGTTGCCGAGAGAACTGCTGCCAACCG +
Preference number: 6 (lower is better)
Translates to: PSPGLALTSPSA*CPRCRENCCQP
Trigger: CGGTTGGCAGCAGTTCTCTCGGCAACGAGGGCAGCAGGCGGAAGGAGAAGTCAAAGCGAGACCGGGAGAAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CAA 72 bp CTGGGCTGGTCCTCCCCACCGTCCGGCTCTGGCTTTTaGGCTGGAGGAGGCCCACTAACTAACCCTCCATTC +
Preference number: 6 (lower is better)
Translates to: LGWSSPPSGSGF*AGGGPLTNPPF
Trigger: GAATGGAGGGTTAGTTAGTGGGCCTCCTCCAGCCAAAAAGCCAGAGCCGGACGGTGGGGAGGACCAGCCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CAA 90 bp CGCCTGCTGCCCTCGTTGCCGAGAGAACTGCTGCCAACCGACTCCTaGTCTGACTCCCCAGACTCAGGAGTGGACCTGGGTTCATCTCCA +
Preference number: 6 (lower is better)
Translates to: RLLPSLPRELLPTDS*SDSPDSGVDLGSSP
Trigger: TGGAGATGAACCCAGGTCCACTCCTGAGTCTGGGGAGTCAGACAAGGAGTCGGTTGGCAGCAGTTCTCTCGGCAACGAGGGCAGCAGGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS GCA 72 bp TCTCCTTCCGCCTGCTGCCCTCGTTGCCGAGAGAACTaGTGCCAACCGACTCCTTGTCTGACTCCCCAGACT +
Preference number: 6 (lower is better)
Translates to: SPSACCPRCREN*CQPTPCLTPQT
Trigger: AGTCTGGGGAGTCAGACAAGGAGTCGGTTGGCAGCAGTTCTCTCGGCAACGAGGGCAGCAGGCGGAAGGAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS GCA 72 bp TCTCCCGGTCTCGCTTTGACTTCTCCTTCCGCCTGCTaGCCTCGTTGCCGAGAGAACTGCTGCCAACCGACT +
Preference number: 6 (lower is better)
Translates to: SPGLALTSPSAC*PRCRENCCQPT
Trigger: AGTCGGTTGGCAGCAGTTCTCTCGGCAACGAGGGCAGCAGGCGGAAGGAGAAGTCAAAGCGAGACCGGGAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CCA 72 bp GGGGGTACGGTCGCCCAGGATACTGTCTGGGAAAGGTaGCATATGATGGTAAGCCCCCTACACATGGCCCCC +
Preference number: 6 (lower is better)
Translates to: GGTVAQDTVWER*HMMVSPLHMAP
Trigger: GGGGGCCATGTGTAGGGGGCTTACCATCATATGCCACCTTTCCCAGACAGTATCCTGGGCGACCGTACCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CAA 72 bp CCCTCGTTGCCGAGAGAACTGCTGCCAACCGACTCCTaGTCTGACTCCCCAGACTCAGGAGTGGACCTGGGT +
Preference number: 6 (lower is better)
Translates to: PSLPRELLPTDS*SDSPDSGVDLG
Trigger: ACCCAGGTCCACTCCTGAGTCTGGGGAGTCAGACAAGGAGTCGGTTGGCAGCAGTTCTCTCGGCAACGAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CAA 90 bp TTCTCCCGGTCTCGCTTTGACTTCTCCTTCCGCCTGCTGCCCTCGTaGCCGAGAGAACTGCTGCCAACCGACTCCTTGTCTGACTCCCCA +
Preference number: 6 (lower is better)
Translates to: FSRSRFDFSFRLLPS*PRELLPTDSLSDSP
Trigger: TGGGGAGTCAGACAAGGAGTCGGTTGGCAGCAGTTCTCTCGGCAACGAGGGCAGCAGGCGGAAGGAGAAGTCAAAGCGAGACCGGGAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS GCA 72 bp CTCGCTTTGACTTCTCCTTCCGCCTGCTGCCCTCGTTaGCGAGAGAACTGCTGCCAACCGACTCCTTGTCTG +
Preference number: 6 (lower is better)
Translates to: LALTSPSACCPR*RENCCQPTPCL
Trigger: CAGACAAGGAGTCGGTTGGCAGCAGTTCTCTCGGCAACGAGGGCAGCAGGCGGAAGGAGAAGTCAAAGCGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CCA 72 bp ATACCGGCTCCTCGGAGCTCTCCACTCCACCACCACTaGCTCCGTTGGAACCCAGATGCATTCTGGGTTCAC +
Preference number: 6 (lower is better)
Translates to: IPAPRSSPLHHH*LRWNPDAFWVH
Trigger: GTGAACCCAGAATGCATCTGGGTTCCAACGGAGCCAGTGGTGGTGGAGTGGAGAGCTCCGAGGAGCCGGTAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CCA 72 bp CAGGAGTGGACCTGGGTTCATCTCCAGCTGAGGCTGTaGGGGACTCAGGCTGAGCTAGGGGAGCTTGTGAAT +
Preference number: 6 (lower is better)
Translates to: QEWTWVHLQLRL*GTQAELGELVN
Trigger: ATTCACAAGCTCCCCTAGCTCAGCCTGAGTCCCCCACAGCCTCAGCTGGAGATGAACCCAGGTCCACTCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CCA 72 bp TCTTTGCCTGGCTCCAGAGCTGGGATGTTGTCCTGGTaGGGGTACGGTCGCCCAGGATACTGTCTGGGAAAG +
Preference number: 6 (lower is better)
Translates to: SLPGSRAGMLSW*GYGRPGYCLGK
Trigger: CTTTCCCAGACAGTATCCTGGGCGACCGTACCCCCACCAGGACAACATCCCAGCTCTGGAGCCAGGCAAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CAA 90 bp GTGCTCAGGCTTTGCATCACCTCCTGGCTATACTTGCTCCCGCCATaGCCAACAGACTCAGACGGGGGCTTCTCAGACACAGGCCCATCC +
Preference number: 6 (lower is better)
Translates to: VLRLCITSWLYLLPP*PTDSDGGFSDTGPS
Trigger: GGATGGGCCTGTGTCTGAGAAGCCCCCGTCTGAGTCTGTTGGCAATGGCGGGAGCAAGTATAGCCAGGAGGTGATGCAAAGCCTGAGCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS TCA 72 bp GGTTCATCTCCAGCTGAGGCTGTGGGGGACTCAGGCTaGGCTAGGGGAGCTTGTGAATCAGAAGACAGTGGG +
Preference number: 6 (lower is better)
Translates to: GSSPAEAVGDSG*ARGACESEDSG
Trigger: CCCACTGTCTTCTGATTCACAAGCTCCCCTAGCTCAGCCTGAGTCCCCCACAGCCTCAGCTGGAGATGAACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CCA 72 bp TGTCCTGGTGGGGGTACGGTCGCCCAGGATACTGTCTaGGAAAGGTGGCATATGATGGTAAGCCCCCTACAC +
Preference number: 6 (lower is better)
Translates to: CPGGGTVAQDTV*ERWHMMVSPLH
Trigger: GTGTAGGGGGCTTACCATCATATGCCACCTTTCCCAGACAGTATCCTGGGCGACCGTACCCCCACCAGGACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CAA 72 bp TCTCGCTTTGACTTCTCCTTCCGCCTGCTGCCCTCGTaGCCGAGAGAACTGCTGCCAACCGACTCCTTGTCT +
Preference number: 6 (lower is better)
Translates to: SRFDFSFRLLPS*PRELLPTDSLS
Trigger: AGACAAGGAGTCGGTTGGCAGCAGTTCTCTCGGCAACGAGGGCAGCAGGCGGAAGGAGAAGTCAAAGCGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CAA 90 bp GCGATCCTCATAGTGCTCAGGCTTTGCATCACCTCCTGGCTATACTaGCTCCCGCCATTGCCAACAGACTCAGACGGGGGCTTCTCAGAC +
Preference number: 6 (lower is better)
Translates to: AILIVLRLCITSWLY*LPPLPTDSDGGFSD
Trigger: GTCTGAGAAGCCCCCGTCTGAGTCTGTTGGCAATGGCGGGAGCAAGTATAGCCAGGAGGTGATGCAAAGCCTGAGCACTATGAGGATCGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS GCA 72 bp AGACGCCCTGCCTGTTCCAAGGCAACCAGCATGGACTaGTCAATGAGGTCTCGCTCTATGAAGCTGCGGAAG +
Preference number: 6 (lower is better)
Translates to: RRPACSKATSMD*SMRSRSMKLRK
Trigger: CTTCCGCAGCTTCATAGAGCGAGACCTCATTGAGCAGTCCATGCTGGTTGCCTTGGAACAGGCAGGGCGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
ENSMUST00000138206.8
CDS GCA 72 bp AAATGCTTCCCCTCCAGAGTCCCTCAGCATGGTGTCTaGCACGACCACTATGGGCCTCTTGAGCACATGAGC +
Preference number: 6 (lower is better)
Translates to: KCFPSRVPQHGV*HDHYGPLEHMS
Trigger: GCTCATGTGCTCAAGAGGCCCATAGTGGTCGTGGCAGACACCATGCTGAGGGACTCTGGAGGGGAAGCATTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CCA 72 bp CCTCGGAGCTCTCCACTCCACCACCACTGGCTCCGTTaGAACCCAGATGCATTCTGGGTTCACTTGAAGCAA +
Preference number: 6 (lower is better)
Translates to: PRSSPLHHHWLR*NPDAFWVHLKQ
Trigger: TTGCTTCAAGTGAACCCAGAATGCATCTGGGTTCCAACGGAGCCAGTGGTGGTGGAGTGGAGAGCTCCGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CAA 72 bp TCCTCGGAGCTCTCCACTCCACCACCACTGGCTCCGTaGGAACCCAGATGCATTCTGGGTTCACTTGAAGCA +
Preference number: 6 (lower is better)
Translates to: SSELSTPPPLAP*EPRCILGSLEA
Trigger: TGCTTCAAGTGAACCCAGAATGCATCTGGGTTCCAACGGAGCCAGTGGTGGTGGAGTGGAGAGCTCCGAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CAA 72 bp AATCTGCTCTCTTCTTGTCCTTCTCCCGGTCTCGCTTaGACTTCTCCTTCCGCCTGCTGCCCTCGTTGCCGA +
Preference number: 6 (lower is better)
Translates to: NLLSSCPSPGLA*TSPSACCPRCR
Trigger: TCGGCAACGAGGGCAGCAGGCGGAAGGAGAAGTCAAAGCGAGACCGGGAGAAGGACAAGAAGAGAGCAGATT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CAA 72 bp ATAGTGCTCAGGCTTTGCATCACCTCCTGGCTATACTaGCTCCCGCCATTGCCAACAGACTCAGACGGGGGC +
Preference number: 6 (lower is better)
Translates to: IVLRLCITSWLY*LPPLPTDSDGG
Trigger: GCCCCCGTCTGAGTCTGTTGGCAATGGCGGGAGCAAGTATAGCCAGGAGGTGATGCAAAGCCTGAGCACTAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS GCA 72 bp TTTGCATCACCTCCTGGCTATACTTGCTCCCGCCATTaGCAACAGACTCAGACGGGGGCTTCTCAGACACAG +
Preference number: 6 (lower is better)
Translates to: FASPPGYTCSRH*QQTQTGASQTQ
Trigger: CTGTGTCTGAGAAGCCCCCGTCTGAGTCTGTTGGCAATGGCGGGAGCAAGTATAGCCAGGAGGTGATGCAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CAA 72 bp CTTTGCATCACCTCCTGGCTATACTTGCTCCCGCCATaGCCAACAGACTCAGACGGGGGCTTCTCAGACACA +
Preference number: 6 (lower is better)
Translates to: LCITSWLYLLPP*PTDSDGGFSDT
Trigger: TGTGTCTGAGAAGCCCCCGTCTGAGTCTGTTGGCAATGGCGGGAGCAAGTATAGCCAGGAGGTGATGCAAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CAA 90 bp TATACCGGCTCCTCGGAGCTCTCCACTCCACCACCACTGGCTCCGTaGGAACCCAGATGCATTCTGGGTTCACTTGAAGCAAGTTTGATC +
Preference number: 6 (lower is better)
Translates to: YTGSSELSTPPPLAP*EPRCILGSLEASLI
Trigger: GATCAAACTTGCTTCAAGTGAACCCAGAATGCATCTGGGTTCCAACGGAGCCAGTGGTGGTGGAGTGGAGAGCTCCGAGGAGCCGGTATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CAA 90 bp GTACTTGCCCTCCCCTTGCATTGCGATCCTCATAGTGCTCAGGCTTaGCATCACCTCCTGGCTATACTTGCTCCCGCCATTGCCAACAGA +
Preference number: 6 (lower is better)
Translates to: VLALPLHCDPHSAQA*HHLLAILAPAIANR
Trigger: TCTGTTGGCAATGGCGGGAGCAAGTATAGCCAGGAGGTGATGCAAAGCCTGAGCACTATGAGGATCGCAATGCAAGGGGAGGGCAAGTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS GCA 72 bp GGTGGAGTCCATACTAACCCACCAATTCAGACGCCCTaGCTGTTCCAAGGCAACCAGCATGGACTGCTCAAT +
Preference number: 6 (lower is better)
Translates to: GGVHTNPPIQTP*LFQGNQHGLLN
Trigger: ATTGAGCAGTCCATGCTGGTTGCCTTGGAACAGGCAGGGCGTCTGAATTGGTGGGTTAGTATGGACTCCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
ENSMUST00000138206.8
CDS CCA 72 bp CTAGAAGATCTCGAGCCAGCCCTGGCTCTGCACCTGTaGAACGAACAAAATCCGACAGGACAGCATCCATGT +
Preference number: 6 (lower is better)
Translates to: LEDLEPALALHL*NEQNPTGQHPC
Trigger: ACATGGATGCTGTCCTGTCGGATTTTGTTCGTTCCACAGGTGCAGAGCCAGGGCTGGCTCGAGATCTTCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
ENSMUST00000132980.8
ENSMUST00000138206.8
CDS CAA 72 bp GCTGGCGTGGGAGATGCCCCTAGACAGGCGTTTTTCTaGAATGACGTCATCTTGTCTCTGAAGGATGGGTCG +
Preference number: 6 (lower is better)
Translates to: AGVGDAPRQAFF*NDVILSLKDGS
Trigger: CGACCCATCCTTCAGAGACAAGATGACGTCATTCAAGAAAAACGCCTGTCTAGGGGCATCTCCCACGCCAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
ENSMUST00000138206.8
CDS CAA 72 bp CTCCCCTTGCATTGCGATCCTCATAGTGCTCAGGCTTaGCATCACCTCCTGGCTATACTTGCTCCCGCCATT +
Preference number: 6 (lower is better)
Translates to: LPLHCDPHSAQA*HHLLAILAPAI
Trigger: AATGGCGGGAGCAAGTATAGCCAGGAGGTGATGCAAAGCCTGAGCACTATGAGGATCGCAATGCAAGGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CAA 72 bp GTTTGTCTCAGGGTGTCCATAGAAGCTGCAGTTCGGTaGTTTGCATTTGGTCTGGGTTGGGGGAAGTCCCCG +
Preference number: 6 (lower is better)
Translates to: VCLRVSIEAAVR*FAFGLGWGKSP
Trigger: CGGGGACTTCCCCCAACCCAGACCAAATGCAAACAACCGAACTGCAGCTTCTATGGACACCCTGAGACAAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CAA 90 bp TACTGGTGCCGGTGGCCCATCTTCAGGGTTCCAACAAAAATGTACTaGCCCTCCCCTTGCATTGCGATCCTCATAGTGCTCAGGCTTTGC +
Preference number: 6 (lower is better)
Translates to: YWCRWPIFRVPTKMY*PSPCIAILIVLRLC
Trigger: GCAAAGCCTGAGCACTATGAGGATCGCAATGCAAGGGGAGGGCAAGTACATTTTTGTTGGAACCCTGAAGATGGGCCACCGGCACCAGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS TCA 72 bp CCACTAAAGGGTGGGGATAGGTTCCCAGCATGGACTTaGCGCAACTGTTCAAAATCACTGAGGGCAGCACTC +
Preference number: 6 (lower is better)
Translates to: PLKGGDRFPAWT*RNCSKSLRAAL
Trigger: GAGTGCTGCCCTCAGTGATTTTGAACAGTTGCGTCAAGTCCATGCTGGGAACCTATCCCCACCCTTTAGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
ENSMUST00000132980.8
ENSMUST00000138206.8
CDS TCA 72 bp GTGTCTGCCACGACCACTATGGGCCTCTTGAGCACATaGGCAAGGACGAAGACATGGAATTCCTCTAGGCTT +
Preference number: 6 (lower is better)
Translates to: VSATTTMGLLST*ARTKTWNSSRL
Trigger: AAGCCTAGAGGAATTCCATGTCTTCGTCCTTGCTCATGTGCTCAAGAGGCCCATAGTGGTCGTGGCAGACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CCA 72 bp CGGAAGTCTTCTTTGTACACAGTGAGATCTGGAAGCTaGAAGGCACAGATGGGCATTTCCAGGGGGTGCTCA +
Preference number: 6 (lower is better)
Translates to: RKSSLYTVRSGS*KAQMGISRGCS
Trigger: TGAGCACCCCCTGGAAATGCCCATCTGTGCCTTCCAGCTTCCAGATCTCACTGTGTACAAAGAAGACTTCCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
ENSMUST00000138206.8
CDS CCA 72 bp GAAGCTGCGGAAGTCTTCTTTGTACACAGTGAGATCTaGAAGCTGGAAGGCACAGATGGGCATTTCCAGGGG +
Preference number: 6 (lower is better)
Translates to: EAAEVFFVHSEI*KLEGTDGHFQG
Trigger: CCCCTGGAAATGCCCATCTGTGCCTTCCAGCTTCCAGATCTCACTGTGTACAAAGAAGACTTCCGCAGCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
ENSMUST00000138206.8
CDS CCA 72 bp TTCCCATCCCCAGTAGTTGCTAAAGGGAGCAGCCTCTaGCAGGTGGAGTCCATACTAACCCACCAATTCAGA +
Preference number: 6 (lower is better)
Translates to: FPSPVVAKGSSL*QVESILTHQFR
Trigger: TCTGAATTGGTGGGTTAGTATGGACTCCACCTGCCAGAGGCTGCTCCCTTTAGCAACTACTGGGGATGGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
ENSMUST00000138206.8
CDS CCA 72 bp GCATACAGCGCTTTCCTCAGCACCAAGTCTCTATCATaGAAACCCCACATCCCAAGAGATGCTGCATGCAGG +
Preference number: 6 (lower is better)
Translates to: AYSAFLSTKSLS*KPHIPRDAACR
Trigger: CCTGCATGCAGCATCTCTTGGGATGTGGGGTTTCCATGATAGAGACTTGGTGCTGAGGAAAGCGCTGTATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CAA 72 bp CTGCCCAGTTTGTTAGCCACGGAATCTGCTCTCTTCTaGTCCTTCTCCCGGTCTCGCTTTGACTTCTCCTTC +
Preference number: 6 (lower is better)
Translates to: LPSLLATESALF*SFSRSRFDFSF
Trigger: GAAGGAGAAGTCAAAGCGAGACCGGGAGAAGGACAAGAAGAGAGCAGATTCCGTGGCTAACAAACTGGGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CAA 72 bp CGGTGGCCCATCTTCAGGGTTCCAACAAAAATGTACTaGCCCTCCCCTTGCATTGCGATCCTCATAGTGCTC +
Preference number: 6 (lower is better)
Translates to: RWPIFRVPTKMY*PSPCIAILIVL
Trigger: GAGCACTATGAGGATCGCAATGCAAGGGGAGGGCAAGTACATTTTTGTTGGAACCCTGAAGATGGGCCACCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CAA 90 bp GTGGCCCATCTTCAGGGTTCCAACAAAAATGTACTTGCCCTCCCCTaGCATTGCGATCCTCATAGTGCTCAGGCTTTGCATCACCTCCTG +
Preference number: 6 (lower is better)
Translates to: VAHLQGSNKNVLALP*HCDPHSAQALHHLL
Trigger: CAGGAGGTGATGCAAAGCCTGAGCACTATGAGGATCGCAATGCAAGGGGAGGGCAAGTACATTTTTGTTGGAACCCTGAAGATGGGCCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CAA 90 bp GACTGCTCAATGAGGTCTCGCTCTATGAAGCTGCGGAAGTCTTCTTaGTACACAGTGAGATCTGGAAGCTGGAAGGCACAGATGGGCATT +
Preference number: 6 (lower is better)
Translates to: DCSMRSRSMKLRKSS*YTVRSGSWKAQMGI
Trigger: AATGCCCATCTGTGCCTTCCAGCTTCCAGATCTCACTGTGTACAAAGAAGACTTCCGCAGCTTCATAGAGCGAGACCTCATTGAGCAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
ENSMUST00000138206.8
CDS GCA 72 bp TCCACTCCACCACCACTGGCTCCGTTGGAACCCAGATaGATTCTGGGTTCACTTGAAGCAAGTTTGATCAAT +
Preference number: 6 (lower is better)
Translates to: STPPPLAPLEPR*ILGSLEASLIN
Trigger: ATTGATCAAACTTGCTTCAAGTGAACCCAGAATGCATCTGGGTTCCAACGGAGCCAGTGGTGGTGGAGTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS TCA 72 bp TCCCAGCATGGACTTGACGCAACTGTTCAAAATCACTaGGGGCAGCACTCACATCCCAGTTCTTTCCTTCTA +
Preference number: 6 (lower is better)
Translates to: SQHGLDATVQNH*GQHSHPSSFLL
Trigger: TAGAAGGAAAGAACTGGGATGTGAGTGCTGCCCTCAGTGATTTTGAACAGTTGCGTCAAGTCCATGCTGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
ENSMUST00000132980.8
ENSMUST00000138206.8
CDS GCA 72 bp TTCAGGGTTCCAACAAAAATGTACTTGCCCTCCCCTTaGATTGCGATCCTCATAGTGCTCAGGCTTTGCATC +
Preference number: 6 (lower is better)
Translates to: FRVPTKMYLPSP*IAILIVLRLCI
Trigger: GATGCAAAGCCTGAGCACTATGAGGATCGCAATGCAAGGGGAGGGCAAGTACATTTTTGTTGGAACCCTGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS GCA 72 bp CTTGAAGCAAGTTTGATCAATTCATTCCATTCCTTCTaGCACTCATCTTCCGTATACACCAGTCCTGACTCT +
Preference number: 6 (lower is better)
Translates to: LEASLINSFHSF*HSSSVYTSPDS
Trigger: AGAGTCAGGACTGGTGTATACGGAAGATGAGTGGCAGAAGGAATGGAATGAATTGATCAAACTTGCTTCAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3
CDS CAA 72 bp GAACCCAGATGCATTCTGGGTTCACTTGAAGCAAGTTaGATCAATTCATTCCATTCCTTCTGCCACTCATCT +
Preference number: 6 (lower is better)
Translates to: EPRCILGSLEAS*INSFHSFCHSS
Trigger: AGATGAGTGGCAGAAGGAATGGAATGAATTGATCAAACTTGCTTCAAGTGAACCCAGAATGCATCTGGGTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035519.12
ENSMUST00000090785.9
ENSMUST00000098849.3