Pregenerated sensors for OTUD6A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051582Ensembl transcript IDs: ENSMUST00000060241.3
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CGTGACCGGCTTCCTGGTGTACTCCTCCCCGATGACAATGGTGGGTaGGTTGGCCTGTACCACCTCGATGGGGGTCTGCAGGACATGCGA | + |
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Preference number: 5 (lower is better) Translates to: RDRLPGVLLPDDNGG*VGLYHLDGGLQDMR Trigger: TCGCATGTCCTGCAGACCCCCATCGAGGTGGTACAGGCCAACTCACCCACCATTGTCATCGGGGAGGAGTACACCAGGAAGCCGGTCACG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060241.3 |
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| CDS GCA 90 bp | CTCTGCTCCATCTCGGCCTCGAGGCGGGAGATGTCCGCGAGCATCTaGTTCCGTCTGCCCTTGTCGTTCTTTGGGACGGAAGCTTTCAAA | + |
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Preference number: 5 (lower is better) Translates to: LCSISASRREMSASI*FRLPLSFFGTEAFK Trigger: TTTGAAAGCTTCCGTCCCAAAGAACGACAAGGGCAGACGGAAGCAGATGCTCGCGGACATCTCCCGCCTCGAGGCCGAGATGGAGCAGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060241.3 |
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| CDS CCA 90 bp | AGCGAAGGCTCTCGATTGTCACGGAGAACACCAGCTGATCCTGGATaGCACGATACATGCAGTGGCCGTCAGCTGGGATGGTCTTCATCT | + |
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Preference number: 5 (lower is better) Translates to: SEGSRLSRRTPADPG*HDTCSGRQLGWSSS Trigger: AGATGAAGACCATCCCAGCTGACGGCCACTGCATGTATCGTGCCATCCAGGATCAGCTGGTGTTCTCCGTGACAATCGAGAGCCTTCGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060241.3 |
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| CDS CCA 90 bp | AGAAGAGGCGCGGTGCCATTCCTCCAAATGCTCCAGCAACCTCAATaGGCTTCACCGAATTGTAGTGCTCTCCGAAGTCGCAGGCGTAGT | + |
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Preference number: 5 (lower is better) Translates to: RRGAVPFLQMLQQPQ*ASPNCSALRSRRRS Trigger: ACTACGCCTGCGACTTCGGAGAGCACTACAATTCGGTGAAGCCCATTGAGGTTGCTGGAGCATTTGGAGGAATGGCACCGCGCCTCTTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060241.3 |
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| CDS TCA 90 bp | TCAGGAAGTCCTCTCGGGTGTAGAAGTTGCCGGCCTCGGGCTCGGTaGAGAAAGGTAAGAAGTCATCAATATGTTTCCGCATGTAGTAGG | + |
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Preference number: 5 (lower is better) Translates to: SGSPLGCRSCRPRAR*RKVRSHQYVSACSR Trigger: CCTACTACATGCGGAAACATATTGATGACTTCTTACCTTTCTTCACCGAGCCCGAGGCCGGCAACTTCTACACCCGAGAGGACTTCCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060241.3 |
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| CDS GCA 90 bp | AGAAAGGTAAGAAGTCATCAATATGTTTCCGCATGTAGTAGGCAGTaGGGTAGCGAAGGCTCTCGATTGTCACGGAGAACACCAGCTGAT | + |
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Preference number: 5 (lower is better) Translates to: RKVRSHQYVSACSRQ*GSEGSRLSRRTPAD Trigger: ATCAGCTGGTGTTCTCCGTGACAATCGAGAGCCTTCGCTACCGCACTGCCTACTACATGCGGAAACATATTGATGACTTCTTACCTTTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060241.3 |
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| CDS CCA 72 bp | GAATGGCAGCGACCTTTTCCTCCTCCTCACGACGGTTaGCAGCCAGTTGTTCGGCCTGGGCCGCAGGCATCC | + |
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Preference number: 6 (lower is better) Translates to: EWQRPFPPPHDG*QPVVRPGPQAS Trigger: GGATGCCTGCGGCCCAGGCCGAACAACTGGCTGCCAACCGTCGTGAGGAGGAGGAAAAGGTCGCTGCCATTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060241.3 |
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| CDS CAA 90 bp | AATGGCAGCGACCTTTTCCTCCTCCTCACGACGGTTGGCAGCCAGTaGTTCGGCCTGGGCCGCAGGCATCCTCTCCTGGTGCCGTCTCTC | + |
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Preference number: 6 (lower is better) Translates to: NGSDLFLLLTTVGSQ*FGLGRRHPLLVPSL Trigger: GAGAGACGGCACCAGGAGAGGATGCCTGCGGCCCAGGCCGAACAACTGGCTGCCAACCGTCGTGAGGAGGAGGAAAAGGTCGCTGCCATT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060241.3 |
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| CDS CAA 90 bp | TTAGCCCCTAGAATGGCAGCGACCTTTTCCTCCTCCTCACGACGGTaGGCAGCCAGTTGTTCGGCCTGGGCCGCAGGCATCCTCTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: LAPRMAATFSSSSRR*AASCSAWAAGILSW Trigger: CCAGGAGAGGATGCCTGCGGCCCAGGCCGAACAACTGGCTGCCAACCGTCGTGAGGAGGAGGAAAAGGTCGCTGCCATTCTAGGGGCTAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060241.3 |
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| CDS CAA 72 bp | AGAATGGCAGCGACCTTTTCCTCCTCCTCACGACGGTaGGCAGCCAGTTGTTCGGCCTGGGCCGCAGGCATC | + |
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Preference number: 6 (lower is better) Translates to: RMAATFSSSSRR*AASCSAWAAGI Trigger: GATGCCTGCGGCCCAGGCCGAACAACTGGCTGCCAACCGTCGTGAGGAGGAGGAAAAGGTCGCTGCCATTCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060241.3 |
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| CDS CAA 90 bp | ACCGGCTTCCTGGTGTACTCCTCCCCGATGACAATGGTGGGTGAGTaGGCCTGTACCACCTCGATGGGGGTCTGCAGGACATGCGACAGG | + |
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Preference number: 6 (lower is better) Translates to: TGFLVYSSPMTMVGE*ACTTSMGVCRTCDR Trigger: CCTGTCGCATGTCCTGCAGACCCCCATCGAGGTGGTACAGGCCAACTCACCCACCATTGTCATCGGGGAGGAGTACACCAGGAAGCCGGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060241.3 |
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| CDS GCA 72 bp | ATCTCGGCCTCGAGGCGGGAGATGTCCGCGAGCATCTaGTTCCGTCTGCCCTTGTCGTTCTTTGGGACGGAA | + |
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Preference number: 6 (lower is better) Translates to: ISASRREMSASI*FRLPLSFFGTE Trigger: TTCCGTCCCAAAGAACGACAAGGGCAGACGGAAGCAGATGCTCGCGGACATCTCCCGCCTCGAGGCCGAGAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060241.3 |
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| CDS TCA 72 bp | CTTCCTGGTGTACTCCTCCCCGATGACAATGGTGGGTaGGTTGGCCTGTACCACCTCGATGGGGGTCTGCAG | + |
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Preference number: 6 (lower is better) Translates to: LPGVLLPDDNGG*VGLYHLDGGLQ Trigger: CTGCAGACCCCCATCGAGGTGGTACAGGCCAACTCACCCACCATTGTCATCGGGGAGGAGTACACCAGGAAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060241.3 |
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| CDS CAA 72 bp | CTGGTGTACTCCTCCCCGATGACAATGGTGGGTGAGTaGGCCTGTACCACCTCGATGGGGGTCTGCAGGACA | + |
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Preference number: 6 (lower is better) Translates to: LVYSSPMTMVGE*ACTTSMGVCRT Trigger: TGTCCTGCAGACCCCCATCGAGGTGGTACAGGCCAACTCACCCACCATTGTCATCGGGGAGGAGTACACCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060241.3 |
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| CDS TCA 72 bp | GTCTGCAGGACATGCGACAGGGCTCTCAGCTCCAGCTaGCCTCCCCACGAAGCATTGTGCACAATGTCATCA | + |
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Preference number: 6 (lower is better) Translates to: VCRTCDRALSSS*PPHEALCTMSS Trigger: TGATGACATTGTGCACAATGCTTCGTGGGGAGGTCAGCTGGAGCTGAGAGCCCTGTCGCATGTCCTGCAGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060241.3 |
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| CDS GCA 72 bp | CGGAGAACACCAGCTGATCCTGGATGGCACGATACATaGAGTGGCCGTCAGCTGGGATGGTCTTCATCTCCA | + |
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Preference number: 6 (lower is better) Translates to: RRTPADPGWHDT*SGRQLGWSSSP Trigger: TGGAGATGAAGACCATCCCAGCTGACGGCCACTGCATGTATCGTGCCATCCAGGATCAGCTGGTGTTCTCCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060241.3 |
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| CDS CCA 72 bp | TCTCGATTGTCACGGAGAACACCAGCTGATCCTGGATaGCACGATACATGCAGTGGCCGTCAGCTGGGATGG | + |
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Preference number: 6 (lower is better) Translates to: SRLSRRTPADPG*HDTCSGRQLGW Trigger: CCATCCCAGCTGACGGCCACTGCATGTATCGTGCCATCCAGGATCAGCTGGTGTTCTCCGTGACAATCGAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060241.3 |
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| CDS CAA 72 bp | GCATGTAGTAGGCAGTGCGGTAGCGAAGGCTCTCGATaGTCACGGAGAACACCAGCTGATCCTGGATGGCAC | + |
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Preference number: 6 (lower is better) Translates to: ACSRQCGSEGSR*SRRTPADPGWH Trigger: GTGCCATCCAGGATCAGCTGGTGTTCTCCGTGACAATCGAGAGCCTTCGCTACCGCACTGCCTACTACATGC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060241.3 |
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| CDS CCA 72 bp | GCGGTGCCATTCCTCCAAATGCTCCAGCAACCTCAATaGGCTTCACCGAATTGTAGTGCTCTCCGAAGTCGC | + |
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Preference number: 6 (lower is better) Translates to: AVPFLQMLQQPQ*ASPNCSALRSR Trigger: GCGACTTCGGAGAGCACTACAATTCGGTGAAGCCCATTGAGGTTGCTGGAGCATTTGGAGGAATGGCACCGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060241.3 |
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| CDS CAA 90 bp | TATGTTTCCGCATGTAGTAGGCAGTGCGGTAGCGAAGGCTCTCGATaGTCACGGAGAACACCAGCTGATCCTGGATGGCACGATACATGC | + |
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Preference number: 6 (lower is better) Translates to: YVSACSRQCGSEGSR*SRRTPADPGWHDTC Trigger: GCATGTATCGTGCCATCCAGGATCAGCTGGTGTTCTCCGTGACAATCGAGAGCCTTCGCTACCGCACTGCCTACTACATGCGGAAACATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060241.3 |
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| CDS TCA 72 bp | CCTCTCGGGTGTAGAAGTTGCCGGCCTCGGGCTCGGTaGAGAAAGGTAAGAAGTCATCAATATGTTTCCGCA | + |
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Preference number: 6 (lower is better) Translates to: PLGCRSCRPRAR*RKVRSHQYVSA Trigger: TGCGGAAACATATTGATGACTTCTTACCTTTCTTCACCGAGCCCGAGGCCGGCAACTTCTACACCCGAGAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060241.3 |
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| CDS GCA 72 bp | AGAAGTCATCAATATGTTTCCGCATGTAGTAGGCAGTaGGGTAGCGAAGGCTCTCGATTGTCACGGAGAACA | + |
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Preference number: 6 (lower is better) Translates to: RSHQYVSACSRQ*GSEGSRLSRRT Trigger: TGTTCTCCGTGACAATCGAGAGCCTTCGCTACCGCACTGCCTACTACATGCGGAAACATATTGATGACTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060241.3 |
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