Pregenerated sensors for OTUD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043415Ensembl transcript IDs: ENSMUST00000052168.6
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAGCTATCAGGAAACATCATTCAGGTGCCCAGCAACCTGCGGCTCTaGGAGGACATTCAAAAACTGATTAAGGCATTACACCTAAAGTCA | + |
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Preference number: 1 (lower is better) Translates to: KLSGNIIQVPSNLRL*EDIQKLIKALHLKS Trigger: TGACTTTAGGTGTAATGCCTTAATCAGTTTTTGAATGTCCTCTCAGAGCCGCAGGTTGCTGGGCACCTGAATGATGTTTCCTGATAGCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| 3UTR-3UTR GCA 90 bp | AACACCAATCTACTCTATAAACATAAGAGTACAGAATTATCATTCTGCCGTCAGGAAACATCATTCAGGTaGCCAGCAACCTGCGGCTCT | + |
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Preference number: 2 (lower is better) Translates to: NTNLLYKHKSTELSFCRQETSFR*PATCGS Trigger: AGAGCCGCAGGTTGCTGGGCACCTGAATGATGTTTC...CTGACGGCAGAATGATAATTCTGTACTCTTATGTTTATAGAGTAGATTGGTGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| 3UTR-3UTR GCA 90 bp | AAGCTTCCTGCTAAAAACAGTGTTGAAATCAAGAAGCTGTATAATGCAGGAGGCCACTTCTCTGGATTCTaGTTAAAAGCCATTTCTCGA | + |
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Preference number: 2 (lower is better) Translates to: KLPAKNSVEIKKLYNAGGHFSGF*LKAISR Trigger: TCGAGAAATGGCTTTTAAGCAGAATCCAGAGAAGTG...GCCTCCTGCATTATACAGCTTCTTGATTTCAACACTGTTTTTAGCAGGAAGCTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| 3UTR-3UTR TCA 90 bp | AAGCTTCCTGCTAAAAACAGTGTTGAAATCAAGAAGCTGTATAATGCAGGAGGCAACAAATTCATACCGTaGGACATCAGCTTGCAAATT | + |
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Preference number: 2 (lower is better) Translates to: KLPAKNSVEIKKLYNAGGNKFIP*DISLQI Trigger: AATTTGCAAGCTGATGTCTCACGGTATGAATTTGTT...GCCTCCTGCATTATACAGCTTCTTGATTTCAACACTGTTTTTAGCAGGAAGCTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| 3UTR GCA 72 bp | AGGCTCACCCAAAGCTATCAGGAAACATCATTCAGGTaGCCAGCAACCTGCGGCTCTGAGAGGACATTCAAA | + |
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Preference number: 3 (lower is better) Translates to: RLTQSYQETSFR*PATCGSERTFK Trigger: TTTGAATGTCCTCTCAGAGCCGCAGGTTGCTGGGCACCTGAATGATGTTTCCTGATAGCTTTGGGTGAGCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| 3UTR TCA 72 bp | GGAAACATCATTCAGGTGCCCAGCAACCTGCGGCTCTaGGAGGACATTCAAAAACTGATTAAGGCATTACAC | + |
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Preference number: 3 (lower is better) Translates to: GNIIQVPSNLRL*EDIQKLIKALH Trigger: GTGTAATGCCTTAATCAGTTTTTGAATGTCCTCTCAGAGCCGCAGGTTGCTGGGCACCTGAATGATGTTTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| 3UTR CCA 72 bp | TTCTCTGGATTCTGCTTAAAAGCCATTTCTCGAAATTaGAACAAGGCAATAGATGAAAGTACACCCATTTTT | + |
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Preference number: 3 (lower is better) Translates to: FSGFCLKAISRN*NKAIDESTPIF Trigger: AAAAATGGGTGTACTTTCATCTATTGCCTTGTTCCAATTTCGAGAAATGGCTTTTAAGCAGAATCCAGAGAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR CCA 90 bp | AGCAGTAGGCTCACCCAAAGCTATCAGGAAACATCATTCAGGTGCCCAGCAACCCTTCGCGTGGTTCGGTaGCCGCGGCGGGTGGGCGCT | + |
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Preference number: 4 (lower is better) Translates to: SSRLTQSYQETSFRCPATLRVVR*PRRVGA Trigger: AGCGCCCACCCGCCGCGGCCACCGAACCACGCGAAG...GGTTGCTGGGCACCTGAATGATGTTTCCTGATAGCTTTGGGTGAGCCTACTGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR CCA 90 bp | GAAACATCATTCAGGTGCCCAGCAACCTGCGGCTCTGAGAGGACATTCAAAAACCCGCGGCGGCGGGGCTaGCTGACTGCAAGGAGACCT | + |
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Preference number: 4 (lower is better) Translates to: ETSFRCPATCGSERTFKNPRRRG*LTARRP Trigger: AGGTCTCCTTGCAGTCAGCCAGCCCCGCCGCCGCGG...GTTTTTGAATGTCCTCTCAGAGCCGCAGGTTGCTGGGCACCTGAATGATGTTTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR TCA 90 bp | GAAACATCATTCAGGTGCCCAGCAACCTGCGGCTCTGAGAGGACATTCAAAAACACTGCAAGGAGACCTTaGAGGCGGCGGCGGCGGTGG | + |
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Preference number: 4 (lower is better) Translates to: ETSFRCPATCGSERTFKNTARRP*RRRRRW Trigger: CCACCGCCGCCGCCGCCTTCAAGGTCTCCTTGCAGT...GTTTTTGAATGTCCTCTCAGAGCCGCAGGTTGCTGGGCACCTGAATGATGTTTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR GCA 90 bp | AGCAGTAGGCTCACCCAAAGCTATCAGGAAACATCATTCAGGTGCCCAGCAACCTCCCTCAGCTCCCGGTaGAGGCTCTGGTCCCCGTAC | + |
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Preference number: 4 (lower is better) Translates to: SSRLTQSYQETSFRCPATSLSSR*RLWSPY Trigger: GTACGGGGACCAGAGCCTGCACCGGGAGCTGAGGGA...GGTTGCTGGGCACCTGAATGATGTTTCCTGATAGCTTTGGGTGAGCCTACTGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR CCA 90 bp | AAGCTTCCTGCTAAAAACAGTGTTGAAATCAAGAAGCTGTATAATGCAGGAGGCGAGGCTGCCAGGGCCTaGCGGTGCTCGCTCAGTCGG | + |
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Preference number: 4 (lower is better) Translates to: KLPAKNSVEIKKLYNAGGEAARA*RCSLSR Trigger: CCGACTGAGCGAGCACCGCCAGGCCCTGGCAGCCTC...GCCTCCTGCATTATACAGCTTCTTGATTTCAACACTGTTTTTAGCAGGAAGCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR CCA 90 bp | GAAACATCATTCAGGTGCCCAGCAACCTGCGGCTCTGAGAGGACATTCAAAAACGCCCACGCCCCATCTTaGGCAGCAGCGATAATAAAC | + |
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Preference number: 4 (lower is better) Translates to: ETSFRCPATCGSERTFKNAHAPS*AAAIIN Trigger: GTTTATTATCGCTGCTGCCCAAGATGGGGCGTGGGC...GTTTTTGAATGTCCTCTCAGAGCCGCAGGTTGCTGGGCACCTGAATGATGTTTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR CCA 90 bp | GAAACATCATTCAGGTGCCCAGCAACCTGCGGCTCTGAGAGGACATTCAAAAACTCAGCATCTGCCCCATaGCCAGCAATTCGGGATATC | + |
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Preference number: 4 (lower is better) Translates to: ETSFRCPATCGSERTFKNSASAP*PAIRDI Trigger: GATATCCCGAATTGCTGGCCATGGGGCAGATGCTGA...GTTTTTGAATGTCCTCTCAGAGCCGCAGGTTGCTGGGCACCTGAATGATGTTTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR GCA 90 bp | GCCATTTCTCGAAATTGGAACAAGGCAATAGATGAAAGTACACCCATTTTTAAAGCCGTGGACGTGAAGTaGGGCGGCAGCGGCGGCTTG | + |
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Preference number: 4 (lower is better) Translates to: AISRNWNKAIDESTPIFKAVDVK*GGSGGL Trigger: CAAGCCGCCGCTGCCGCCGCACTTCACGTCCACGGC...TTTAAAAATGGGTGTACTTTCATCTATTGCCTTGTTCCAATTTCGAGAAATGGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR CCA 90 bp | ACAAATTCATACCGTGAGACATCAGCTTGCAAATTAAGTAGCACTCACTTTATACAGAGAAGGCGGGCATaGCAGCGGCGGCGGCGGCTT | + |
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Preference number: 4 (lower is better) Translates to: TNSYRETSACKLSSTHFIQRRRA*QRRRRL Trigger: AAGCCGCCGCCGCCGCTGCCATGCCCGCCTTCTCTG...TATAAAGTGAGTGCTACTTAATTTGCAAGCTGATGTCTCACGGTATGAATTTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR GCA 90 bp | ACAAATTCATACCGTGAGACATCAGCTTGCAAATTAAGTAGCACTCACTTTATAGCCAGGGCCTGGCGGTaGTCGCTCAGTCGGAAGTTC | + |
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Preference number: 4 (lower is better) Translates to: TNSYRETSACKLSSTHFIARAWR*SLSRKF Trigger: GAACTTCCGACTGAGCGAGCACCGCCAGGCCCTGGC...TATAAAGTGAGTGCTACTTAATTTGCAAGCTGATGTCTCACGGTATGAATTTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR GCA 90 bp | AGCAGTAGGCTCACCCAAAGCTATCAGGAAACATCATTCAGGTGCCCAGCAACCGTATCTGGGTTTGCTTaGACCAATTGTCATACTCTG | + |
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Preference number: 4 (lower is better) Translates to: SSRLTQSYQETSFRCPATVSGFA*TNCHTL Trigger: CAGAGTATGACAATTGGTGCAAGCAAACCCAGATAC...GGTTGCTGGGCACCTGAATGATGTTTCCTGATAGCTTTGGGTGAGCCTACTGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR CCA 90 bp | GCCATTTCTCGAAATTGGAACAAGGCAATAGATGAAAGTACACCCATTTTTAAACTAGCTTCTCGTCCCTaGGATCCGCCCGGGACGTGC | + |
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Preference number: 4 (lower is better) Translates to: AISRNWNKAIDESTPIFKLASRP*DPPGTC Trigger: GCACGTCCCGGGCGGATCCCAGGGACGAGAAGCTAG...TTTAAAAATGGGTGTACTTTCATCTATTGCCTTGTTCCAATTTCGAGAAATGGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR CCA 90 bp | AAGCTTCCTGCTAAAAACAGTGTTGAAATCAAGAAGCTGTATAATGCAGGAGGCGTCGCCCTCAATGAGTaGGCTGAAGTGGTCCAGGTG | + |
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Preference number: 4 (lower is better) Translates to: KLPAKNSVEIKKLYNAGGVALNE*AEVVQV Trigger: CACCTGGACCACTTCAGCCCACTCATTGAGGGCGAC...GCCTCCTGCATTATACAGCTTCTTGATTTCAACACTGTTTTTAGCAGGAAGCTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR GCA 90 bp | GCCATTTCTCGAAATTGGAACAAGGCAATAGATGAAAGTACACCCATTTTTAAACTCAGGTACTTGTCCTaGCTCTCCACCTCGGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: AISRNWNKAIDESTPIFKLRYLS*LSTSAR Trigger: CCTGGCCGAGGTGGAGAGGCAGGACAAGTACCTGAG...TTTAAAAATGGGTGTACTTTCATCTATTGCCTTGTTCCAATTTCGAGAAATGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR CCA 90 bp | AACACCAATCTACTCTATAAACATAAGAGTACAGAATTATCATTCTGCCGTCAGTCCCGGTGCAGGCTCTaGTCCCCGTACACAGTCTTG | + |
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Preference number: 4 (lower is better) Translates to: NTNLLYKHKSTELSFCRQSRCRL*SPYTVL Trigger: CAAGACTGTGTACGGGGACCAGAGCCTGCACCGGGA...CTGACGGCAGAATGATAATTCTGTACTCTTATGTTTATAGAGTAGATTGGTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR GCA 90 bp | AACACCAATCTACTCTATAAACATAAGAGTACAGAATTATCATTCTGCCGTCAGCCGCAGGGTAATGGGTaGACACGCTGCTGTAGAGCT | + |
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Preference number: 4 (lower is better) Translates to: NTNLLYKHKSTELSFCRQPQGNG*TRCCRA Trigger: AGCTCTACAGCAGCGTGTGCACCCATTACCCTGCGG...CTGACGGCAGAATGATAATTCTGTACTCTTATGTTTATAGAGTAGATTGGTGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR TCA 90 bp | ACAAATTCATACCGTGAGACATCAGCTTGCAAATTAAGTAGCACTCACTTTATACGTACACAGTCTTGCTaGCAGCTCGGTAGAGGCAGT | + |
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Preference number: 4 (lower is better) Translates to: TNSYRETSACKLSSTHFIRTQSC*QLGRGS Trigger: ACTGCCTCTACCGAGCTGTCAGCAAGACTGTGTACG...TATAAAGTGAGTGCTACTTAATTTGCAAGCTGATGTCTCACGGTATGAATTTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR TCA 90 bp | ACAAATTCATACCGTGAGACATCAGCTTGCAAATTAAGTAGCACTCACTTTATAAGTTGCCGTCGGGGATaGTGTGGAATCGGTACTTGT | + |
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Preference number: 4 (lower is better) Translates to: TNSYRETSACKLSSTHFISCRRG*CGIGTC Trigger: ACAAGTACCGATTCCACATCATCCCCGACGGCAACT...TATAAAGTGAGTGCTACTTAATTTGCAAGCTGATGTCTCACGGTATGAATTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR CCA 90 bp | AAGCTTCCTGCTAAAAACAGTGTTGAAATCAAGAAGCTGTATAATGCAGGAGGCACAGGGATATGGCCATaGACTTGGCAAGTTCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: KLPAKNSVEIKKLYNAGGTGIWP*TWQVLH Trigger: ATGAAGAACTTGCCAAGTCCATGGCCATATCCCTGT...GCCTCCTGCATTATACAGCTTCTTGATTTCAACACTGTTTTTAGCAGGAAGCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR GCA 90 bp | ACAAATTCATACCGTGAGACATCAGCTTGCAAATTAAGTAGCACTCACTTTATACGGTACTTGTTTCTCTaGCTCAGGTACTTGTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: TNSYRETSACKLSSTHFIRYLFL*LRYLSC Trigger: GCAGGACAAGTACCTGAGGCAGAGAAACAAGTACCG...TATAAAGTGAGTGCTACTTAATTTGCAAGCTGATGTCTCACGGTATGAATTTGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR GCA 90 bp | GCCATTTCTCGAAATTGGAACAAGGCAATAGATGAAAGTACACCCATTTTTAAATTCACATTCAGCATCTaGCCCATGGCCAGCAATTCG | + |
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Preference number: 4 (lower is better) Translates to: AISRNWNKAIDESTPIFKFTFSI*PMASNS Trigger: CGAATTGCTGGCCATGGGGCAGATGCTGAATGTGAA...TTTAAAAATGGGTGTACTTTCATCTATTGCCTTGTTCCAATTTCGAGAAATGGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR CCA 90 bp | ACAAATTCATACCGTGAGACATCAGCTTGCAAATTAAGTAGCACTCACTTTATACCGTCGGGGATGATGTaGAATCGGTACTTGTTTCTC | + |
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Preference number: 4 (lower is better) Translates to: TNSYRETSACKLSSTHFIPSGMM*NRYLFL Trigger: GAGAAACAAGTACCGATTCCACATCATCCCCGACGG...TATAAAGTGAGTGCTACTTAATTTGCAAGCTGATGTCTCACGGTATGAATTTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR CCA 90 bp | GCCATTTCTCGAAATTGGAACAAGGCAATAGATGAAAGTACACCCATTTTTAAAATATGGCCATGGACTTaGCAAGTTCTTCATCGCGTT | + |
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Preference number: 4 (lower is better) Translates to: AISRNWNKAIDESTPIFKIWPWT*QVLHRV Trigger: AACGCGATGAAGAACTTGCCAAGTCCATGGCCATAT...TTTAAAAATGGGTGTACTTTCATCTATTGCCTTGTTCCAATTTCGAGAAATGGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR CCA 90 bp | ACAAATTCATACCGTGAGACATCAGCTTGCAAATTAAGTAGCACTCACTTTATATTTTGGACAGGGATATaGCCATGGACTTGGCAAGTT | + |
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Preference number: 4 (lower is better) Translates to: TNSYRETSACKLSSTHFIFWTGI*PWTWQV Trigger: AACTTGCCAAGTCCATGGCCATATCCCTGTCCAAAA...TATAAAGTGAGTGCTACTTAATTTGCAAGCTGATGTCTCACGGTATGAATTTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR CCA 90 bp | ACAAATTCATACCGTGAGACATCAGCTTGCAAATTAAGTAGCACTCACTTTATAGTTCAATATACATTTTaGACAGGGATATGGCCATGG | + |
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Preference number: 4 (lower is better) Translates to: TNSYRETSACKLSSTHFIVQYTF*TGIWPW Trigger: CCATGGCCATATCCCTGTCCAAAATGTATATTGAAC...TATAAAGTGAGTGCTACTTAATTTGCAAGCTGATGTCTCACGGTATGAATTTGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS GCA 90 bp | GGCGGCAGCAGGAGGCGCTCGGCGCCCAGGGCCCGCACGGCGATGTaGGCCGTGGACGTGAAGTGCGGCGGCAGCGGCGGCTTGCTGCAC | + |
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Preference number: 5 (lower is better) Translates to: GGSRRRSAPRARTAM*AVDVKCGGSGGLLH Trigger: GTGCAGCAAGCCGCCGCTGCCGCCGCACTTCACGTCCACGGCGCACATCGCCGTGCGGGCCCTGGGCGCCGAGCGCCTCCTGCTGCCGCC 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS CCA 90 bp | GCAGGCAGAGAAGGCGGGCATGGCAGCGGCGGCGGCGGCTTCGCGTaGTTCGGTGGCCGCGGCGGGTGGGCGCTCTCCGGTATCCGGCTC | + |
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Preference number: 5 (lower is better) Translates to: AGREGGHGSGGGGFA*FGGRGGWALSGIRL Trigger: GAGCCGGATACCGGAGAGCGCCCACCCGCCGCGGCCACCGAACCACGCGAAGCCGCCGCCGCCGCTGCCATGCCCGCCTTCTCTGCCTGC 77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS CCA 90 bp | TTGGGCAGCAGCGATAATAAACTCCCCCACGTCGCCCTCAATGAGTaGGCTGAAGTGGTCCAGGTGGTCCGCGATGTAGTGCACGGTCTG | + |
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Preference number: 5 (lower is better) Translates to: LGSSDNKLPHVALNE*AEVVQVVRDVVHGL Trigger: CAGACCGTGCACTACATCGCGGACCACCTGGACCACTTCAGCCCACTCATTGAGGGCGACGTGGGGGAGTTTATTATCGCTGCTGCCCAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR CAA 90 bp | ACAAATTCATACCGTGAGACATCAGCTTGCAAATTAAGTAGCACTCACTTTATAGACTGCAAGGAGACCTaGAAGGCGGCGGCGGCGGTG | + |
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Preference number: 5 (lower is better) Translates to: TNSYRETSACKLSSTHFIDCKET*KAAAAV Trigger: CACCGCCGCCGCCGCCTTCAAGGTCTCCTTGCAGTC...TATAAAGTGAGTGCTACTTAATTTGCAAGCTGATGTCTCACGGTATGAATTTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR CAA 90 bp | AGCAGTAGGCTCACCCAAAGCTATCAGGAAACATCATTCAGGTGCCCAGCAACCTTTCTGTATCTGGGTTaGCTTGCACCAATTGTCATA | + |
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Preference number: 5 (lower is better) Translates to: SSRLTQSYQETSFRCPATFLYLG*LAPIVI Trigger: TATGACAATTGGTGCAAGCAAACCCAGATACAGAAA...GGTTGCTGGGCACCTGAATGATGTTTCCTGATAGCTTTGGGTGAGCCTACTGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR CAA 90 bp | GAAACATCATTCAGGTGCCCAGCAACCTGCGGCTCTGAGAGGACATTCAAAAACTGTTCAATATACATTTaGGACAGGGATATGGCCATG | + |
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Preference number: 5 (lower is better) Translates to: ETSFRCPATCGSERTFKNCSIYI*DRDMAM Trigger: CATGGCCATATCCCTGTCCAAAATGTATATTGAACA...GTTTTTGAATGTCCTCTCAGAGCCGCAGGTTGCTGGGCACCTGAATGATGTTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR CAA 90 bp | AACACCAATCTACTCTATAAACATAAGAGTACAGAATTATCATTCTGCCGTCAGGGCCCACGCCCCATCTaGGGCAGCAGCGATAATAAA | + |
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Preference number: 5 (lower is better) Translates to: NTNLLYKHKSTELSFCRQGPRPI*GSSDNK Trigger: TTTATTATCGCTGCTGCCCAAGATGGGGCGTGGGCC...CTGACGGCAGAATGATAATTCTGTACTCTTATGTTTATAGAGTAGATTGGTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR CAA 90 bp | AAGCTTCCTGCTAAAAACAGTGTTGAAATCAAGAAGCTGTATAATGCAGGAGGCGATATGGCCATGGACTaGGCAAGTTCTTCATCGCGT | + |
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Preference number: 5 (lower is better) Translates to: KLPAKNSVEIKKLYNAGGDMAMD*ASSSSR Trigger: ACGCGATGAAGAACTTGCCAAGTCCATGGCCATATC...GCCTCCTGCATTATACAGCTTCTTGATTTCAACACTGTTTTTAGCAGGAAGCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS-3UTR CAA 90 bp | AAGCTTCCTGCTAAAAACAGTGTTGAAATCAAGAAGCTGTATAATGCAGGAGGCATGTGGAATCGGTACTaGTTTCTCTGCCTCAGGTAC | + |
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Preference number: 5 (lower is better) Translates to: KLPAKNSVEIKKLYNAGGMWNRY*FLCLRY Trigger: GTACCTGAGGCAGAGAAACAAGTACCGATTCCACAT...GCCTCCTGCATTATACAGCTTCTTGATTTCAACACTGTTTTTAGCAGGAAGCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS GCA 72 bp | AGGGCCCGCACGGCGATGTGCGCCGTGGACGTGAAGTaGGGCGGCAGCGGCGGCTTGCTGCACGCGCCCGGC | + |
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Preference number: 6 (lower is better) Translates to: RARTAMCAVDVK*GGSGGLLHAPG Trigger: GCCGGGCGCGTGCAGCAAGCCGCCGCTGCCGCCGCACTTCACGTCCACGGCGCACATCGCCGTGCGGGCCCT 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS GCA 72 bp | GGGCTAGCTTCTCGTCCCTGGGATCCGCCCGGGACGTaGCTACGGCTTCGCCTTCGCCGTTCTGGGCCGGCT | + |
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Preference number: 6 (lower is better) Translates to: GLASRPWDPPGT*LRLRLRRSGPA Trigger: AGCCGGCCCAGAACGGCGAAGGCGAAGCCGTAGGCACGTCCCGGGCGGATCCCAGGGACGAGAAGCTAGCCC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS CCA 72 bp | GCCAGCAATTCGGGATATCCGGCCCACGCCCCATCTTaGGCAGCAGCGATAATAAACTCCCCCACGTCGCCC | + |
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Preference number: 6 (lower is better) Translates to: ASNSGYPAHAPS*AAAIINSPTSP Trigger: GGGCGACGTGGGGGAGTTTATTATCGCTGCTGCCCAAGATGGGGCGTGGGCCGGATATCCCGAATTGCTGGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS CAA 72 bp | GGCCAGCAATTCGGGATATCCGGCCCACGCCCCATCTaGGGCAGCAGCGATAATAAACTCCCCCACGTCGCC | + |
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Preference number: 6 (lower is better) Translates to: GQQFGISGPRPI*GSSDNKLPHVA Trigger: GGCGACGTGGGGGAGTTTATTATCGCTGCTGCCCAAGATGGGGCGTGGGCCGGATATCCCGAATTGCTGGCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS CCA 72 bp | AGCGATAATAAACTCCCCCACGTCGCCCTCAATGAGTaGGCTGAAGTGGTCCAGGTGGTCCGCGATGTAGTG | + |
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Preference number: 6 (lower is better) Translates to: SDNKLPHVALNE*AEVVQVVRDVV Trigger: CACTACATCGCGGACCACCTGGACCACTTCAGCCCACTCATTGAGGGCGACGTGGGGGAGTTTATTATCGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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| CDS GCA 72 bp | AATCGGTACTTGTTTCTCTGCCTCAGGTACTTGTCCTaGCTCTCCACCTCGGCCAGGTACAGGGCTAGCTTC | + |
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Preference number: 6 (lower is better) Translates to: NRYLFLCLRYLS*LSTSARYRASF Trigger: GAAGCTAGCCCTGTACCTGGCCGAGGTGGAGAGGCAGGACAAGTACCTGAGGCAGAGAAACAAGTACCGATT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052168.6 |
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