Pregenerated sensors for OTOS (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044055

Ensembl transcript IDs: ENSMUST00000053144.4

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GGAGAAAGGCCAGTAGGGCATAGCTGGTGGCTGTGTGTGGGGATCTaGTTCCTCTGGCATTGGCTTGGCTCCTGCAGGAATCCCCAGCAG	+
Preference number: 5 (lower is better) Translates to: GERPVGHSWWLCVGI*FLWHWLGSCRNPQQ Trigger: CTGCTGGGGATTCCTGCAGGAGCCAAGCCAATGCCAGAGGAAGCAGATCCCCACACACAGCCACCAGCTATGCCCTACTGGCCTTTCTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053144.4
CDS CCA 90 bp	GGAAGCCTAGGGTGCTCCCCAGAGGAAAGTGTGCAAAGAAGGTTCTaGCCATGTCCTCGATCTGTGGGTAGGCGCCCTGGGTCTGGAAAT	+
Preference number: 5 (lower is better) Translates to: GSLGCSPEESVQRRF*PCPRSVGRRPGSGN Trigger: ATTTCCAGACCCAGGGCGCCTACCCACAGATCGAGGACATGGCCAGAACCTTCTTTGCACACTTTCCTCTGGGGAGCACCCTAGGCTTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053144.4
CDS CCA 90 bp	CAGAGGAAAGTGTGCAAAGAAGGTTCTGGCCATGTCCTCGATCTGTaGGTAGGCGCCCTGGGTCTGGAAATATTGCACGTAGTTCCAGAA	+
Preference number: 5 (lower is better) Translates to: QRKVCKEGSGHVLDL*VGALGLEILHVVPE Trigger: TTCTGGAACTACGTGCAATATTTCCAGACCCAGGGCGCCTACCCACAGATCGAGGACATGGCCAGAACCTTCTTTGCACACTTTCCTCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053144.4
CDS GCA 72 bp	GCATTGGCTTGGCTCCTGCAGGAATCCCCAGCAGCATaGCAAGGGCCAGCCACCACAGCACACAGGCCTGCA	+
Preference number: 6 (lower is better) Translates to: ALAWLLQESPAA*QGPATTAHRPA Trigger: TGCAGGCCTGTGTGCTGTGGTGGCTGGCCCTTGGCATGCTGCTGGGGATTCCTGCAGGAGCCAAGCCAATGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053144.4
CDS GCA 72 bp	GTGGGGATCTGCTTCCTCTGGCATTGGCTTGGCTCCTaGAGGAATCCCCAGCAGCATGCCAAGGGCCAGCCA	+
Preference number: 6 (lower is better) Translates to: VGICFLWHWLGS*RNPQQHAKGQP Trigger: TGGCTGGCCCTTGGCATGCTGCTGGGGATTCCTGCAGGAGCCAAGCCAATGCCAGAGGAAGCAGATCCCCAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053144.4
CDS CCA 72 bp	TGGTGGCTGTGTGTGGGGATCTGCTTCCTCTGGCATTaGCTTGGCTCCTGCAGGAATCCCCAGCAGCATGCC	+
Preference number: 6 (lower is better) Translates to: WWLCVGICFLWH*LGSCRNPQQHA Trigger: GGCATGCTGCTGGGGATTCCTGCAGGAGCCAAGCCAATGCCAGAGGAAGCAGATCCCCACACACAGCCACCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053144.4
CDS CCA 72 bp	GGGTGCTCCCCAGAGGAAAGTGTGCAAAGAAGGTTCTaGCCATGTCCTCGATCTGTGGGTAGGCGCCCTGGG	+
Preference number: 6 (lower is better) Translates to: GCSPEESVQRRF*PCPRSVGRRPG Trigger: CCCAGGGCGCCTACCCACAGATCGAGGACATGGCCAGAACCTTCTTTGCACACTTTCCTCTGGGGAGCACCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053144.4
CDS CAA 72 bp	GGCTGTGTGTGGGGATCTGCTTCCTCTGGCATTGGCTaGGCTCCTGCAGGAATCCCCAGCAGCATGCCAAGG	+
Preference number: 6 (lower is better) Translates to: GCVWGSASSGIG*APAGIPSSMPR Trigger: CCTTGGCATGCTGCTGGGGATTCCTGCAGGAGCCAAGCCAATGCCAGAGGAAGCAGATCCCCACACACAGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053144.4
CDS CCA 72 bp	CATAGCTGGTGGCTGTGTGTGGGGATCTGCTTCCTCTaGCATTGGCTTGGCTCCTGCAGGAATCCCCAGCAG	+
Preference number: 6 (lower is better) Translates to: HSWWLCVGICFL*HWLGSCRNPQQ Trigger: CTGCTGGGGATTCCTGCAGGAGCCAAGCCAATGCCAGAGGAAGCAGATCCCCACACACAGCCACCAGCTATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053144.4
CDS GCA 72 bp	CCAGTAGGGCATAGCTGGTGGCTGTGTGTGGGGATCTaGTTCCTCTGGCATTGGCTTGGCTCCTGCAGGAAT	+
Preference number: 6 (lower is better) Translates to: PVGHSWWLCVGI*FLWHWLGSCRN Trigger: ATTCCTGCAGGAGCCAAGCCAATGCCAGAGGAAGCAGATCCCCACACACAGCCACCAGCTATGCCCTACTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053144.4
CDS CAA 90 bp	GGCCATGTCCTCGATCTGTGGGTAGGCGCCCTGGGTCTGGAAATATaGCACGTAGTTCCAGAAGTCAGAGGTGGAGAAAGGCCAGTAGGG	+
Preference number: 6 (lower is better) Translates to: GHVLDLWVGALGLEI*HVVPEVRGGERPVG Trigger: CCCTACTGGCCTTTCTCCACCTCTGACTTCTGGAACTACGTGCAATATTTCCAGACCCAGGGCGCCTACCCACAGATCGAGGACATGGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053144.4
CDS CCA 72 bp	GAAGTCAGAGGTGGAGAAAGGCCAGTAGGGCATAGCTaGTGGCTGTGTGTGGGGATCTGCTTCCTCTGGCAT	+
Preference number: 6 (lower is better) Translates to: EVRGGERPVGHS*WLCVGICFLWH Trigger: ATGCCAGAGGAAGCAGATCCCCACACACAGCCACCAGCTATGCCCTACTGGCCTTTCTCCACCTCTGACTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053144.4
CDS CCA 72 bp	GTGTGCAAAGAAGGTTCTGGCCATGTCCTCGATCTGTaGGTAGGCGCCCTGGGTCTGGAAATATTGCACGTA	+
Preference number: 6 (lower is better) Translates to: VCKEGSGHVLDL*VGALGLEILHV Trigger: TACGTGCAATATTTCCAGACCCAGGGCGCCTACCCACAGATCGAGGACATGGCCAGAACCTTCTTTGCACAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053144.4
CDS CAA 72 bp	CTCGATCTGTGGGTAGGCGCCCTGGGTCTGGAAATATaGCACGTAGTTCCAGAAGTCAGAGGTGGAGAAAGG	+
Preference number: 6 (lower is better) Translates to: LDLWVGALGLEI*HVVPEVRGGER Trigger: CCTTTCTCCACCTCTGACTTCTGGAACTACGTGCAATATTTCCAGACCCAGGGCGCCTACCCACAGATCGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053144.4

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