Pregenerated sensors for OTOR (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027416Ensembl transcript IDs: ENSMUST00000028902.3
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TCCTGCCACCAAATAAAGCCAGGAAGGTACAGATACACAGGTTCAGTTATTTCCTCTCTTCTTCATCACTaGTGTTTCTGTTTTATCTGC | + |
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Preference number: 2 (lower is better) Translates to: SCHQIKPGRYRYTGSVISSLLHH*CFCFIC Trigger: GCAGATAAAACAGAAACACCAGTGATGAAGAAGAGA...GGAAATAACTGAACCTGTGTATCTGTACCTTCCTGGCTTTATTTGGTGGCAGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028902.3 |
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| 3UTR TCA 72 bp | AGTTGGTGGAAAGACCGGGGCAAGAGTAAACAAGACTaGGTTGACAATTTCCATATCTTAGCACCTTCAAGA | + |
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Preference number: 3 (lower is better) Translates to: SWWKDRGKSKQD*VDNFHILAPSR Trigger: TCTTGAAGGTGCTAAGATATGGAAATTGTCAACTCAGTCTTGTTTACTCTTGCCCCGGTCTTTCCACCAACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028902.3 |
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| CDS-3UTR GCA 90 bp | CCAACCTCCTGCCACCAAATAAAGCCAGGAAGGTACAGATACACAGGTTCAGTTGGTCACCATAAACACTaGCAGCCCAAAACTCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: PTSCHQIKPGRYRYTGSVGHHKH*QPKTLQ Trigger: CTGGAGAGTTTTGGGCTGGCAGTGTTTATGGTGACC...AACTGAACCTGTGTATCTGTACCTTCCTGGCTTTATTTGGTGGCAGGAGGTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028902.3 |
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| CDS-3UTR CCA 90 bp | GTACAGATACACAGGTTCAGTTATTTCCACTTCTTCTCTTCTTCATCACTGGTGTTGGGATCTCCTTGGTaGCCTCCTGGTATACACGCT | + |
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Preference number: 4 (lower is better) Translates to: VQIHRFSYFHFFSSSSLVLGSPW*PPGIHA Trigger: AGCGTGTATACCAGGAGGCCACCAAGGAGATCCCAA...CACCAGTGATGAAGAAGAGAAGAAGTGGAAATAACTGAACCTGTGTATCTGTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028902.3 |
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| CDS-3UTR CCA 90 bp | AATAAAGCCAGGAAGGTACAGATACACAGGTTCAGTTATTTCCACTTCTTCTCTGTCAATATCCGTGGTTaGGATCTCCTTGGTGGCCTC | + |
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Preference number: 4 (lower is better) Translates to: NKARKVQIHRFSYFHFFSVNIRG*DLLGGL Trigger: GAGGCCACCAAGGAGATCCCAACCACGGATATTGAC...AGAGAAGAAGTGGAAATAACTGAACCTGTGTATCTGTACCTTCCTGGCTTTATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028902.3 |
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| CDS-3UTR CCA 90 bp | CCAGGAAGGTACAGATACACAGGTTCAGTTATTTCCACTTCTTCTCTTCTTCATGATGAACCTACAGTCTaGGGCATTGTAATCTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: PGRYRYTGSVISTSSLLHDEPTV*GIVIFL Trigger: CAGGAAGATTACAATGCCCCAGACTGTAGGTTCATC...ATGAAGAAGAGAAGAAGTGGAAATAACTGAACCTGTGTATCTGTACCTTCCTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028902.3 |
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| CDS-3UTR CCA 90 bp | CACCAAATAAAGCCAGGAAGGTACAGATACACAGGTTCAGTTATTTCCACTTCTCCTTCACCAAGTTGCTaGGGAAATAACCTACAATTC | + |
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Preference number: 4 (lower is better) Translates to: HQIKPGRYRYTGSVISTSPSPSC*GNNLQF Trigger: GAATTGTAGGTTATTTCCCCAGCAACTTGGTGAAGG...AGAAGTGGAAATAACTGAACCTGTGTATCTGTACCTTCCTGGCTTTATTTGGTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028902.3 |
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| CDS-3UTR GCA 90 bp | AGGTTCAGTTATTTCCACTTCTTCTCTTCTTCATCACTGGTGTTTCTGTTTTATTCCATAAATACACCATaGCCGGCACATAGAACCACA | + |
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Preference number: 4 (lower is better) Translates to: RFSYFHFFSSSSLVFLFYSINTP*PAHRTT Trigger: TGTGGTTCTATGTGCCGGGCATGGTGTATTTATGGA...ATAAAACAGAAACACCAGTGATGAAGAAGAGAAGAAGTGGAAATAACTGAACCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028902.3 |
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| CDS-3UTR GCA 90 bp | AGGTTCAGTTATTTCCACTTCTTCTCTTCTTCATCACTGGTGTTTCTGTTTTATGCTCCTTCACCAAGTTaGTGGGGAAATAACCTACAA | + |
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Preference number: 4 (lower is better) Translates to: RFSYFHFFSSSSLVFLFYAPSPS*WGNNLQ Trigger: TTGTAGGTTATTTCCCCAGCAACTTGGTGAAGGAGC...ATAAAACAGAAACACCAGTGATGAAGAAGAGAAGAAGTGGAAATAACTGAACCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028902.3 |
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| CDS-3UTR GCA 90 bp | GATACACAGGTTCAGTTATTTCCACTTCTTCTCTTCTTCATCACTGGTGTTTCTATTGTAATCTTCCTGTaGTCTTGCCAGAGAAATAGT | + |
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Preference number: 4 (lower is better) Translates to: DTQVQLFPLLLFFITGVSIVIFL*SCQRNS Trigger: ACTATTTCTCTGGCAAGAGCACAGGAAGATTACAAT...AGAAACACCAGTGATGAAGAAGAGAAGAAGTGGAAATAACTGAACCTGTGTATC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028902.3 |
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| CDS-3UTR CCA 90 bp | CAGGTTCAGTTATTTCCACTTCTTCTCTTCTTCATCACTGGTGTTTCTGTTTTATTTCTGTTACCAGCTTaGAGTAAACATAGATCTGCT | + |
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Preference number: 4 (lower is better) Translates to: QVQLFPLLLFFITGVSVLFLLPA*SKHRSA Trigger: AGCAGATCTATGTTTACTCCAAGCTGGTAACAGAAA...TAAAACAGAAACACCAGTGATGAAGAAGAGAAGAAGTGGAAATAACTGAACCTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028902.3 |
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| CDS GCA 90 bp | TCTCCTTGGTGGCCTCCTGGTATACACGCTGCTCCTTCACCAAGTTaGTGGGGAAATAACCTACAATTCCCATCTCATCCTGGTGGTCAC | + |
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Preference number: 5 (lower is better) Translates to: SPWWPPGIHAAPSPS*WGNNLQFPSHPGGH Trigger: GTGACCACCAGGATGAGATGGGAATTGTAGGTTATTTCCCCAGCAACTTGGTGAAGGAGCAGCGTGTATACCAGGAGGCCACCAAGGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028902.3 |
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| CDS CCA 90 bp | CCTTGGTGGCCTCCTGGTATACACGCTGCTCCTTCACCAAGTTGCTaGGGAAATAACCTACAATTCCCATCTCATCCTGGTGGTCACCAT | + |
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Preference number: 5 (lower is better) Translates to: PWWPPGIHAAPSPSC*GNNLQFPSHPGGHH Trigger: ATGGTGACCACCAGGATGAGATGGGAATTGTAGGTTATTTCCCCAGCAACTTGGTGAAGGAGCAGCGTGTATACCAGGAGGCCACCAAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028902.3 |
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| CDS GCA 90 bp | CTTGACATCGATGAACCTACAGTCTGGGGCATTGTAATCTTCCTGTaGTCTTGCCAGAGAAATAGTATAGACACACTCCTCATCCGCACA | + |
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Preference number: 5 (lower is better) Translates to: LDIDEPTVWGIVIFL*SCQRNSIDTLLIRT Trigger: TGTGCGGATGAGGAGTGTGTCTATACTATTTCTCTGGCAAGAGCACAGGAAGATTACAATGCCCCAGACTGTAGGTTCATCGATGTCAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028902.3 |
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| CDS GCA 90 bp | ATCGATGAACCTACAGTCTGGGGCATTGTAATCTTCCTGTGCTCTTaGCAGAGAAATAGTATAGACACACTCCTCATCCGCACACAACTT | + |
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Preference number: 5 (lower is better) Translates to: IDEPTVWGIVIFLCS*QRNSIDTLLIRTQL Trigger: AAGTTGTGTGCGGATGAGGAGTGTGTCTATACTATTTCTCTGGCAAGAGCACAGGAAGATTACAATGCCCCAGACTGTAGGTTCATCGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028902.3 |
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| CDS GCA 90 bp | TCCGCACACAACTTCTTAGAAGAAAGTTTATCCATAAATACACCATaGCCGGCACATAGAACCACAAGGCCCCCAAGCAAAAGAATCAAT | + |
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Preference number: 5 (lower is better) Translates to: SAHNFLEESLSINTP*PAHRTTRPPSKRIN Trigger: ATTGATTCTTTTGCTTGGGGGCCTTGTGGTTCTATGTGCCGGGCATGGTGTATTTATGGATAAACTTTCTTCTAAGAAGTTGTGTGCGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028902.3 |
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| CDS CCA 90 bp | AACATAGATCTGCTGCCCTTTCTTGACATCGATGAACCTACAGTCTaGGGCATTGTAATCTTCCTGTGCTCTTGCCAGAGAAATAGTATA | + |
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Preference number: 5 (lower is better) Translates to: NIDLLPFLDIDEPTV*GIVIFLCSCQRNSI Trigger: TATACTATTTCTCTGGCAAGAGCACAGGAAGATTACAATGCCCCAGACTGTAGGTTCATCGATGTCAAGAAAGGGCAGCAGATCTATGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028902.3 |
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| CDS CCA 72 bp | TCAATATCCGTGGTTGGGATCTCCTTGGTGGCCTCCTaGTATACACGCTGCTCCTTCACCAAGTTGCTGGGG | + |
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Preference number: 6 (lower is better) Translates to: SISVVGISLVAS*YTRCSFTKLLG Trigger: CCCCAGCAACTTGGTGAAGGAGCAGCGTGTATACCAGGAGGCCACCAAGGAGATCCCAACCACGGATATTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028902.3 |
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| CDS CCA 72 bp | AGAAGAAGTCAATATCCGTGGTTGGGATCTCCTTGGTaGCCTCCTGGTATACACGCTGCTCCTTCACCAAGT | + |
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Preference number: 6 (lower is better) Translates to: RRSQYPWLGSPW*PPGIHAAPSPS Trigger: ACTTGGTGAAGGAGCAGCGTGTATACCAGGAGGCCACCAAGGAGATCCCAACCACGGATATTGACTTCTTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028902.3 |
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| CDS GCA 72 bp | TGGCCTCCTGGTATACACGCTGCTCCTTCACCAAGTTaGTGGGGAAATAACCTACAATTCCCATCTCATCCT | + |
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Preference number: 6 (lower is better) Translates to: WPPGIHAAPSPS*WGNNLQFPSHP Trigger: AGGATGAGATGGGAATTGTAGGTTATTTCCCCAGCAACTTGGTGAAGGAGCAGCGTGTATACCAGGAGGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028902.3 |
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| CDS CCA 72 bp | CTGCTGCCCTTTCTTGACATCGATGAACCTACAGTCTaGGGCATTGTAATCTTCCTGTGCTCTTGCCAGAGA | + |
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Preference number: 6 (lower is better) Translates to: LLPFLDIDEPTV*GIVIFLCSCQR Trigger: TCTCTGGCAAGAGCACAGGAAGATTACAATGCCCCAGACTGTAGGTTCATCGATGTCAAGAAAGGGCAGCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028902.3 |
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| CDS CCA 72 bp | CCTCCTGGTATACACGCTGCTCCTTCACCAAGTTGCTaGGGAAATAACCTACAATTCCCATCTCATCCTGGT | + |
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Preference number: 6 (lower is better) Translates to: PPGIHAAPSPSC*GNNLQFPSHPG Trigger: ACCAGGATGAGATGGGAATTGTAGGTTATTTCCCCAGCAACTTGGTGAAGGAGCAGCGTGTATACCAGGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028902.3 |
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| CDS GCA 72 bp | CCTACAGTCTGGGGCATTGTAATCTTCCTGTGCTCTTaGCAGAGAAATAGTATAGACACACTCCTCATCCGC | + |
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Preference number: 6 (lower is better) Translates to: PTVWGIVIFLCS*QRNSIDTLLIR Trigger: GCGGATGAGGAGTGTGTCTATACTATTTCTCTGGCAAGAGCACAGGAAGATTACAATGCCCCAGACTGTAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028902.3 |
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| CDS GCA 72 bp | GATGAACCTACAGTCTGGGGCATTGTAATCTTCCTGTaGTCTTGCCAGAGAAATAGTATAGACACACTCCTC | + |
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Preference number: 6 (lower is better) Translates to: DEPTVWGIVIFL*SCQRNSIDTLL Trigger: GAGGAGTGTGTCTATACTATTTCTCTGGCAAGAGCACAGGAAGATTACAATGCCCCAGACTGTAGGTTCATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028902.3 |
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| CDS GCA 72 bp | AACTTCTTAGAAGAAAGTTTATCCATAAATACACCATaGCCGGCACATAGAACCACAAGGCCCCCAAGCAAA | + |
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Preference number: 6 (lower is better) Translates to: NFLEESLSINTP*PAHRTTRPPSK Trigger: TTTGCTTGGGGGCCTTGTGGTTCTATGTGCCGGGCATGGTGTATTTATGGATAAACTTTCTTCTAAGAAGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028902.3 |
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