Pregenerated sensors for OTOP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051596Ensembl transcript IDs: ENSMUST00000063136.15, ENSMUST00000114099.6
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAGTTGTACACAGTCATACAAATTACAGACAGGAAATGCTTGTTATaGAAAACTCCATCATTTTCATCCAAACCTGGATCACCTTCTTCT | + |
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Preference number: 1 (lower is better) Translates to: KLYTVIQITDRKCLL*KTPSFSSKPGSPSS Trigger: AGAAGAAGGTGATCCAGGTTTGGATGAAAATGATGGAGTTTTTCATAACAAGCATTTCCTGTCTGTAATTTGTATGACTGTGTACAACTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| 3UTR-3UTR GCA 90 bp | CTCTGGTCCTTTTTGAGAGCAGCAGGCCATCTCTCCAACCCCAAGACCCAACTCCCCTTCGCAGGTGGCTaGAGAACCCCCTTGCTCCCC | + |
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Preference number: 2 (lower is better) Translates to: LWSFLRAAGHLSNPKTQLPFAGG*RTPLLP Trigger: GGGGAGCAAGGGGGTTCTGCAGCCACCTGCGAAGGG...GAGTTGGGTCTTGGGGTTGGAGAGATGGCCTGCTGCTCTCAAAAAGGACCAGAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| 3UTR-3UTR GCA 90 bp | GGATCACCTTCTTCTAAAACACAGGGTCTCAGCCAGAAAATGCTCAACTCATTTGCTGCAGAACCCCCTTaGTCCCCCGTCCCTTCTCCT | + |
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Preference number: 2 (lower is better) Translates to: GSPSSKTQGLSQKMLNSFAAEPP*SPVPSP Trigger: AGGAGAAGGGACGGGGGAGCAAGGGGGTTCTGCAGC...AAATGAGTTGAGCATTTTCTGGCTGAGACCCTGTGTTTTAGAAGAAGGTGATCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| 3UTR-3UTR CCA 90 bp | CTCTGGTCCTTTTTGAGAGCAGCAGGCCATCTCTCCAACCCCAAGACCCAACTCGTTAGCAGTGCAACATaGACCATTTTTCCTGTCTCT | + |
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Preference number: 2 (lower is better) Translates to: LWSFLRAAGHLSNPKTQLVSSAT*TIFPVS Trigger: AGAGACAGGAAAAATGGTCCATGTTGCACTGCTAAC...GAGTTGGGTCTTGGGGTTGGAGAGATGGCCTGCTGCTCTCAAAAAGGACCAGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| 3UTR-3UTR CCA 90 bp | CTCTGGTCCTTTTTGAGAGCAGCAGGCCATCTCTCCAACCCCAAGACCCAACTCTTTTCTATGCAAAATTaGCTGAATGTAGATGTGGGA | + |
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Preference number: 2 (lower is better) Translates to: LWSFLRAAGHLSNPKTQLFSMQN*LNVDVG Trigger: TCCCACATCTACATTCAGCCAATTTTGCATAGAAAA...GAGTTGGGTCTTGGGGTTGGAGAGATGGCCTGCTGCTCTCAAAAAGGACCAGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| 3UTR-3UTR CCA 90 bp | ACTCTTGCATGTGAGTGCTGGTGTCCCTGGAAACCTGAGAAGAATATCAGATCTCATTTTGGATCTGATTaGAATTGGCTAAGGACAGGC | + |
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Preference number: 2 (lower is better) Translates to: TLACECWCPWKPEKNIRSHFGSD*NWLRTG Trigger: GCCTGTCCTTAGCCAATTCCAATCAGATCCAAAATG...AGATCTGATATTCTTCTCAGGTTTCCAGGGACACCAGCACTCACATGCAAGAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| 3UTR-3UTR TCA 90 bp | ACTCTTGCATGTGAGTGCTGGTGTCCCTGGAAACCTGAGAAGAATATCAGATCTCTGACAGCAGTAAAATaGTGTTTGCCAGGAATTTAT | + |
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Preference number: 2 (lower is better) Translates to: TLACECWCPWKPEKNIRSLTAVK*CLPGIY Trigger: ATAAATTCCTGGCAAACATCATTTTACTGCTGTCAG...AGATCTGATATTCTTCTCAGGTTTCCAGGGACACCAGCACTCACATGCAAGAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| 3UTR-3UTR TCA 90 bp | TGCCATACTAAAAACCAAACTCTGGTCCTTTTTGAGAGCAGCAGGCCATCTCTCTGTGGTACATTAGTTTaGGATTCTGACAGCAGTAAA | + |
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Preference number: 2 (lower is better) Translates to: CHTKNQTLVLFESSRPSLCGTLV*DSDSSK Trigger: TTTACTGCTGTCAGAATCTCAAACTAATGTACCACA...GAGAGATGGCCTGCTGCTCTCAAAAAGGACCAGAGTTTGGTTTTTAGTATGGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| 3UTR TCA 72 bp | GGTCTCAGCCAGAAAATGCTCAACTCATTTTGGATCTaGTTGGAATTGGCTAAGGACAGGCTCCAGCTATCT | + |
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Preference number: 3 (lower is better) Translates to: GLSQKMLNSFWI*LELAKDRLQLS Trigger: AGATAGCTGGAGCCTGTCCTTAGCCAATTCCAATCAGATCCAAAATGAGTTGAGCATTTTCTGGCTGAGACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| 3UTR-3UTR CAA 90 bp | ACTCTTGCATGTGAGTGCTGGTGTCCCTGGAAACCTGAGAAGAATATCAGATCTAATGCTCAACTCATTTaGGATCTGATTGGAATTGGC | + |
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Preference number: 3 (lower is better) Translates to: TLACECWCPWKPEKNIRSNAQLI*DLIGIG Trigger: GCCAATTCCAATCAGATCCAAAATGAGTTGAGCATT...AGATCTGATATTCTTCTCAGGTTTCCAGGGACACCAGCACTCACATGCAAGAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| 3UTR CCA 72 bp | AGAAAATGCTCAACTCATTTTGGATCTGATTGGAATTaGCTAAGGACAGGCTCCAGCTATCTTGTGCAGTTG | + |
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Preference number: 3 (lower is better) Translates to: RKCSTHFGSDWN*LRTGSSYLVQL Trigger: CAACTGCACAAGATAGCTGGAGCCTGTCCTTAGCCAATTCCAATCAGATCCAAAATGAGTTGAGCATTTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| 3UTR-3UTR CAA 90 bp | TGCCATACTAAAAACCAAACTCTGGTCCTTTTTGAGAGCAGCAGGCCATCTCTCATTTTCTATGCAAAATaGGCTGAATGTAGATGTGGG | + |
|
Preference number: 3 (lower is better) Translates to: CHTKNQTLVLFESSRPSLIFYAK*AECRCG Trigger: CCCACATCTACATTCAGCCAATTTTGCATAGAAAAT...GAGAGATGGCCTGCTGCTCTCAAAAAGGACCAGAGTTTGGTTTTTAGTATGGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| 3UTR TCA 72 bp | ACAGTCATACAAATTACAGACAGGAAATGCTTGTTATaGAAAACTCCATCATTTTCATCCAAACCTGGATCA | + |
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Preference number: 3 (lower is better) Translates to: TVIQITDRKCLL*KTPSFSSKPGS Trigger: TGATCCAGGTTTGGATGAAAATGATGGAGTTTTTCATAACAAGCATTTCCTGTCTGTAATTTGTATGACTGT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR GCA 90 bp | CGCCCTTCGCAGGTGGCTGCAGAACCCCCTTGCTCCCCCGTCCCTTCTCCTTTCAGTGGATGCAGCCAGTaGGGCAGCCTCGCTGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: RPSQVAAEPPCSPVPSPFSGCSQ*GSLAAA Trigger: TGCAGCAGCGAGGCTGCCGCACTGGCTGCATCCACT...GAAAGGAGAAGGGACGGGGGAGCAAGGGGGTTCTGCAGCCACCTGCGAAGGGCG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR TCA 90 bp | CCGCCCTTCGCAGGTGGCTGCAGAACCCCCTTGCTCCCCCGTCCCTTCTCCTTTCTCTTCATGCCGCCCTaGAGGAAGTCCAGACATCGG | + |
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Preference number: 4 (lower is better) Translates to: PPFAGGCRTPLLPRPFSFLFMPP*RKSRHR Trigger: CCGATGTCTGGACTTCCTTCAGGGCGGCATGAAGAG...AAAGGAGAAGGGACGGGGGAGCAAGGGGGTTCTGCAGCCACCTGCGAAGGGCGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR TCA 90 bp | CGCCCTTCGCAGGTGGCTGCAGAACCCCCTTGCTCCCCCGTCCCTTCTCCTTTCGCGCGCTGGGTTCTTTaGCTCATCCAGAGACTTCTC | + |
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Preference number: 4 (lower is better) Translates to: RPSQVAAEPPCSPVPSPFARWVL*LIQRLL Trigger: GAGAAGTCTCTGGATGAGTCAAAGAACCCAGCGCGC...GAAAGGAGAAGGGACGGGGGAGCAAGGGGGTTCTGCAGCCACCTGCGAAGGGCG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR GCA 90 bp | CGCCCTTCGCAGGTGGCTGCAGAACCCCCTTGCTCCCCCGTCCCTTCTCCTTTCACCTGCAATAGGGTATaGACTGCATGGGTGACTGGG | + |
|
Preference number: 4 (lower is better) Translates to: RPSQVAAEPPCSPVPSPFTCNRV*TAWVTG Trigger: CCCAGTCACCCATGCAGTGCATACCCTATTGCAGGT...GAAAGGAGAAGGGACGGGGGAGCAAGGGGGTTCTGCAGCCACCTGCGAAGGGCG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR GCA 90 bp | CCGCCCTTCGCAGGTGGCTGCAGAACCCCCTTGCTCCCCCGTCCCTTCTCCTTTAAAGAGGGCAGCAGCTaGGTGCATCCGGTAGAAAAT | + |
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Preference number: 4 (lower is better) Translates to: PPFAGGCRTPLLPRPFSFKEGSS*VHPVEN Trigger: ATTTTCTACCGGATGCACGCAGCTGCTGCCCTCTTT...AAAGGAGAAGGGACGGGGGAGCAAGGGGGTTCTGCAGCCACCTGCGAAGGGCGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR GCA 90 bp | CTCTGGTCCTTTTTGAGAGCAGCAGGCCATCTCTCCAACCCCAAGACCCAACTCAGTGGATGCAGCCAGTaGGGCAGCCTCGCTGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: LWSFLRAAGHLSNPKTQLSGCSQ*GSLAAA Trigger: TGCAGCAGCGAGGCTGCCGCACTGGCTGCATCCACT...GAGTTGGGTCTTGGGGTTGGAGAGATGGCCTGCTGCTCTCAAAAAGGACCAGAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR GCA 90 bp | CGCCCTTCGCAGGTGGCTGCAGAACCCCCTTGCTCCCCCGTCCCTTCTCCTTTCTCTTTCCCACACCTCTaGTGCAGACACAGATTTCCA | + |
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Preference number: 4 (lower is better) Translates to: RPSQVAAEPPCSPVPSPFSFPHL*CRHRFP Trigger: TGGAAATCTGTGTCTGCAGCAGAGGTGTGGGAAAGA...GAAAGGAGAAGGGACGGGGGAGCAAGGGGGTTCTGCAGCCACCTGCGAAGGGCG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR TCA 90 bp | CGCCCTTCGCAGGTGGCTGCAGAACCCCCTTGCTCCCCCGTCCCTTCTCCTTTCACTCCGAGAATCCAATaGAGTATGCGACTTTCAAGC | + |
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Preference number: 4 (lower is better) Translates to: RPSQVAAEPPCSPVPSPFTPRIQ*SMRLSS Trigger: GCTTGAAAGTCGCATACTTCATTGGATTCTCGGAGT...GAAAGGAGAAGGGACGGGGGAGCAAGGGGGTTCTGCAGCCACCTGCGAAGGGCG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR GCA 90 bp | CCGCCCTTCGCAGGTGGCTGCAGAACCCCCTTGCTCCCCCGTCCCTTCTCCTTTCAGAGGAAATACACCTaGAATAGGGTATGCACTGCA | + |
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Preference number: 4 (lower is better) Translates to: PPFAGGCRTPLLPRPFSFQRKYT*NRVCTA Trigger: TGCAGTGCATACCCTATTGCAGGTGTATTTCCTCTG...AAAGGAGAAGGGACGGGGGAGCAAGGGGGTTCTGCAGCCACCTGCGAAGGGCGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR TCA 90 bp | CTCTGGTCCTTTTTGAGAGCAGCAGGCCATCTCTCCAACCCCAAGACCCAACTCCTCTTCATGCCGCCCTaGAGGAAGTCCAGACATCGG | + |
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Preference number: 4 (lower is better) Translates to: LWSFLRAAGHLSNPKTQLLFMPP*RKSRHR Trigger: CCGATGTCTGGACTTCCTTCAGGGCGGCATGAAGAG...GAGTTGGGTCTTGGGGTTGGAGAGATGGCCTGCTGCTCTCAAAAAGGACCAGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR CCA 90 bp | CTCTGGTCCTTTTTGAGAGCAGCAGGCCATCTCTCCAACCCCAAGACCCAACTCGAGCCGACTCGCTCTTaGATTTGGAGCGCCCGATGT | + |
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Preference number: 4 (lower is better) Translates to: LWSFLRAAGHLSNPKTQLEPTRS*IWSARC Trigger: ACATCGGGCGCTCCAAATCCAAGAGCGAGTCGGCTC...GAGTTGGGTCTTGGGGTTGGAGAGATGGCCTGCTGCTCTCAAAAAGGACCAGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR TCA 90 bp | CCGCCCTTCGCAGGTGGCTGCAGAACCCCCTTGCTCCCCCGTCCCTTCTCCTTTTCTGGTACTCAATGTTaGAGGGGTACAGATAGTAAA | + |
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Preference number: 4 (lower is better) Translates to: PPFAGGCRTPLLPRPFSFSGTQC*RGTDSK Trigger: TTTACTATCTGTACCCCTTCAACATTGAGTACCAGA...AAAGGAGAAGGGACGGGGGAGCAAGGGGGTTCTGCAGCCACCTGCGAAGGGCGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR TCA 90 bp | GGATCTGATTGGAATTGGCTAAGGACAGGCTCCAGCTATCTTGTGCAGTTGATTGGCACGCGAGGAGCCTaGGGATGCTGCGGGAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: GSDWNWLRTGSSYLVQLIGTRGA*GCCGRR Trigger: TCTTCTCCCGCAGCATCCTCAGGCTCCTCGCGTGCC...AATCAACTGCACAAGATAGCTGGAGCCTGTCCTTAGCCAATTCCAATCAGATCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114099.6 |
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| CDS-3UTR GCA 90 bp | CTCTGGTCCTTTTTGAGAGCAGCAGGCCATCTCTCCAACCCCAAGACCCAACTCACCTGCAATAGGGTATaGACTGCATGGGTGACTGGG | + |
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Preference number: 4 (lower is better) Translates to: LWSFLRAAGHLSNPKTQLTCNRV*TAWVTG Trigger: CCCAGTCACCCATGCAGTGCATACCCTATTGCAGGT...GAGTTGGGTCTTGGGGTTGGAGAGATGGCCTGCTGCTCTCAAAAAGGACCAGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR GCA 90 bp | CTCTGGTCCTTTTTGAGAGCAGCAGGCCATCTCTCCAACCCCAAGACCCAACTCGGTCAACATCCAGCTTaGGCGCTGGGTTCTTTGACT | + |
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Preference number: 4 (lower is better) Translates to: LWSFLRAAGHLSNPKTQLGQHPA*ALGSLT Trigger: AGTCAAAGAACCCAGCGCGCAAGCTGGATGTTGACC...GAGTTGGGTCTTGGGGTTGGAGAGATGGCCTGCTGCTCTCAAAAAGGACCAGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR CCA 90 bp | CTCTGGTCCTTTTTGAGAGCAGCAGGCCATCTCTCCAACCCCAAGACCCAACTCACTCGCTCTTGGATTTaGAGCGCCCGATGTGGATCA | + |
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Preference number: 4 (lower is better) Translates to: LWSFLRAAGHLSNPKTQLTRSWI*SARCGS Trigger: TGATCCACATCGGGCGCTCCAAATCCAAGAGCGAGT...GAGTTGGGTCTTGGGGTTGGAGAGATGGCCTGCTGCTCTCAAAAAGGACCAGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR TCA 90 bp | CTCTGGTCCTTTTTGAGAGCAGCAGGCCATCTCTCCAACCCCAAGACCCAACTCGACACAGATTTCCATTaGCAGCAGGTGACCCATCCT | + |
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Preference number: 4 (lower is better) Translates to: LWSFLRAAGHLSNPKTQLDTDFH*QQVTHP Trigger: AGGATGGGTCACCTGCTGTCAATGGAAATCTGTGTC...GAGTTGGGTCTTGGGGTTGGAGAGATGGCCTGCTGCTCTCAAAAAGGACCAGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR GCA 90 bp | ACTCTTGCATGTGAGTGCTGGTGTCCCTGGAAACCTGAGAAGAATATCAGATCTGAAGCCTCCTCTTCATaGCGCCCTGAAGGAAGTCCA | + |
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Preference number: 4 (lower is better) Translates to: TLACECWCPWKPEKNIRSEASSS*RPEGSP Trigger: TGGACTTCCTTCAGGGCGGCATGAAGAGGAGGCTTC...AGATCTGATATTCTTCTCAGGTTTCCAGGGACACCAGCACTCACATGCAAGAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR CCA 90 bp | ACTCTTGCATGTGAGTGCTGGTGTCCCTGGAAACCTGAGAAGAATATCAGATCTCATTCAGGACGCTGTTaGCCCACAGTAGGAGGTTCG | + |
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Preference number: 4 (lower is better) Translates to: TLACECWCPWKPEKNIRSHSGRC*PTVGGS Trigger: CGAACCTCCTACTGTGGGCCAACAGCGTCCTGAATG...AGATCTGATATTCTTCTCAGGTTTCCAGGGACACCAGCACTCACATGCAAGAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR CCA 90 bp | GGATCTGATTGGAATTGGCTAAGGACAGGCTCCAGCTATCTTGTGCAGTTGATTCATTCAGGACGCTGTTaGCCCACAGTAGGAGGTTCG | + |
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Preference number: 4 (lower is better) Translates to: GSDWNWLRTGSSYLVQLIHSGRC*PTVGGS Trigger: CGAACCTCCTACTGTGGGCCAACAGCGTCCTGAATG...AATCAACTGCACAAGATAGCTGGAGCCTGTCCTTAGCCAATTCCAATCAGATCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR GCA 90 bp | TGCCATACTAAAAACCAAACTCTGGTCCTTTTTGAGAGCAGCAGGCCATCTCTCGGTCAACATCCAGCTTaGGCGCTGGGTTCTTTGACT | + |
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Preference number: 4 (lower is better) Translates to: CHTKNQTLVLFESSRPSLGQHPA*ALGSLT Trigger: AGTCAAAGAACCCAGCGCGCAAGCTGGATGTTGACC...GAGAGATGGCCTGCTGCTCTCAAAAAGGACCAGAGTTTGGTTTTTAGTATGGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR CCA 90 bp | TGCCATACTAAAAACCAAACTCTGGTCCTTTTTGAGAGCAGCAGGCCATCTCTCACTCGCTCTTGGATTTaGAGCGCCCGATGTGGATCA | + |
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Preference number: 4 (lower is better) Translates to: CHTKNQTLVLFESSRPSLTRSWI*SARCGS Trigger: TGATCCACATCGGGCGCTCCAAATCCAAGAGCGAGT...GAGAGATGGCCTGCTGCTCTCAAAAAGGACCAGAGTTTGGTTTTTAGTATGGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR TCA 90 bp | GGATCACCTTCTTCTAAAACACAGGGTCTCAGCCAGAAAATGCTCAACTCATTTGCGCGCTGGGTTCTTTaGCTCATCCAGAGACTTCTC | + |
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Preference number: 4 (lower is better) Translates to: GSPSSKTQGLSQKMLNSFARWVL*LIQRLL Trigger: GAGAAGTCTCTGGATGAGTCAAAGAACCCAGCGCGC...AAATGAGTTGAGCATTTTCTGGCTGAGACCCTGTGTTTTAGAAGAAGGTGATCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR TCA 90 bp | GGATCTGATTGGAATTGGCTAAGGACAGGCTCCAGCTATCTTGTGCAGTTGATTGACACAGATTTCCATTaGCAGCAGGTGACCCATCCT | + |
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Preference number: 4 (lower is better) Translates to: GSDWNWLRTGSSYLVQLIDTDFH*QQVTHP Trigger: AGGATGGGTCACCTGCTGTCAATGGAAATCTGTGTC...AATCAACTGCACAAGATAGCTGGAGCCTGTCCTTAGCCAATTCCAATCAGATCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR GCA 90 bp | GGATCACCTTCTTCTAAAACACAGGGTCTCAGCCAGAAAATGCTCAACTCATTTCACTGCATCTTCTGGTaGTGGGAGCTGTCCACTCTG | + |
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Preference number: 4 (lower is better) Translates to: GSPSSKTQGLSQKMLNSFHCIFW*WELSTL Trigger: CAGAGTGGACAGCTCCCAGCACCAGAAGATGCAGTG...AAATGAGTTGAGCATTTTCTGGCTGAGACCCTGTGTTTTAGAAGAAGGTGATCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR GCA 90 bp | GGATCACCTTCTTCTAAAACACAGGGTCTCAGCCAGAAAATGCTCAACTCATTTGAAGCCTCCTCTTCATaGCGCCCTGAAGGAAGTCCA | + |
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Preference number: 4 (lower is better) Translates to: GSPSSKTQGLSQKMLNSFEASSS*RPEGSP Trigger: TGGACTTCCTTCAGGGCGGCATGAAGAGGAGGCTTC...AAATGAGTTGAGCATTTTCTGGCTGAGACCCTGTGTTTTAGAAGAAGGTGATCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR GCA 90 bp | TGCCATACTAAAAACCAAACTCTGGTCCTTTTTGAGAGCAGCAGGCCATCTCTCAAAGAGGGCAGCAGCTaGGTGCATCCGGTAGAAAAT | + |
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Preference number: 4 (lower is better) Translates to: CHTKNQTLVLFESSRPSLKEGSS*VHPVEN Trigger: ATTTTCTACCGGATGCACGCAGCTGCTGCCCTCTTT...GAGAGATGGCCTGCTGCTCTCAAAAAGGACCAGAGTTTGGTTTTTAGTATGGCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR GCA 90 bp | TGCCATACTAAAAACCAAACTCTGGTCCTTTTTGAGAGCAGCAGGCCATCTCTCTTCCCACACCTCTGCTaGAGACACAGATTTCCATTG | + |
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Preference number: 4 (lower is better) Translates to: CHTKNQTLVLFESSRPSLFPHLC*RHRFPL Trigger: CAATGGAAATCTGTGTCTGCAGCAGAGGTGTGGGAA...GAGAGATGGCCTGCTGCTCTCAAAAAGGACCAGAGTTTGGTTTTTAGTATGGCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR GCA 90 bp | ACTCTTGCATGTGAGTGCTGGTGTCCCTGGAAACCTGAGAAGAATATCAGATCTTTCCCACACCTCTGCTaGAGACACAGATTTCCATTG | + |
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Preference number: 4 (lower is better) Translates to: TLACECWCPWKPEKNIRSFPHLC*RHRFPL Trigger: CAATGGAAATCTGTGTCTGCAGCAGAGGTGTGGGAA...AGATCTGATATTCTTCTCAGGTTTCCAGGGACACCAGCACTCACATGCAAGAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR TCA 90 bp | TGCCATACTAAAAACCAAACTCTGGTCCTTTTTGAGAGCAGCAGGCCATCTCTCACTCCGAGAATCCAATaGAGTATGCGACTTTCAAGC | + |
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Preference number: 4 (lower is better) Translates to: CHTKNQTLVLFESSRPSLTPRIQ*SMRLSS Trigger: GCTTGAAAGTCGCATACTTCATTGGATTCTCGGAGT...GAGAGATGGCCTGCTGCTCTCAAAAAGGACCAGAGTTTGGTTTTTAGTATGGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR GCA 90 bp | TGCCATACTAAAAACCAAACTCTGGTCCTTTTTGAGAGCAGCAGGCCATCTCTCTCCAAAGCGAGATGTTaGAAAGAAACAGAAAGGCCG | + |
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Preference number: 4 (lower is better) Translates to: CHTKNQTLVLFESSRPSLSKARC*KETERP Trigger: CGGCCTTTCTGTTTCTTTGCAACATCTCGCTTTGGA...GAGAGATGGCCTGCTGCTCTCAAAAAGGACCAGAGTTTGGTTTTTAGTATGGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR GCA 90 bp | GGATCACCTTCTTCTAAAACACAGGGTCTCAGCCAGAAAATGCTCAACTCATTTTCTTTCCCACACCTCTaGTGCAGACACAGATTTCCA | + |
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Preference number: 4 (lower is better) Translates to: GSPSSKTQGLSQKMLNSFSFPHL*CRHRFP Trigger: TGGAAATCTGTGTCTGCAGCAGAGGTGTGGGAAAGA...AAATGAGTTGAGCATTTTCTGGCTGAGACCCTGTGTTTTAGAAGAAGGTGATCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR GCA 90 bp | GGATCACCTTCTTCTAAAACACAGGGTCTCAGCCAGAAAATGCTCAACTCATTTCAGAGGAAATACACCTaGAATAGGGTATGCACTGCA | + |
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Preference number: 4 (lower is better) Translates to: GSPSSKTQGLSQKMLNSFQRKYT*NRVCTA Trigger: TGCAGTGCATACCCTATTGCAGGTGTATTTCCTCTG...AAATGAGTTGAGCATTTTCTGGCTGAGACCCTGTGTTTTAGAAGAAGGTGATCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR GCA 90 bp | GGATCACCTTCTTCTAAAACACAGGGTCTCAGCCAGAAAATGCTCAACTCATTTTCCAAAGCGAGATGTTaGAAAGAAACAGAAAGGCCG | + |
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Preference number: 4 (lower is better) Translates to: GSPSSKTQGLSQKMLNSFSKARC*KETERP Trigger: CGGCCTTTCTGTTTCTTTGCAACATCTCGCTTTGGA...AAATGAGTTGAGCATTTTCTGGCTGAGACCCTGTGTTTTAGAAGAAGGTGATCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS GCA 90 bp | CCCATCCTGGGCCATCCCCTGGCTCCCGAGAGTGGATGCAGCCAGTaGGGCAGCCTCGCTGCTGCAGACGGTGACCACACGCAGAGTGCG | + |
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Preference number: 5 (lower is better) Translates to: PILGHPLAPESGCSQ*GSLAAADGDHTQSA Trigger: CGCACTCTGCGTGTGGTCACCGTCTGCAGCAGCGAGGCTGCCGCACTGGCTGCATCCACTCTCGGGAGCCAGGGGATGGCCCAGGATGGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS GCA 90 bp | GCTCCTTCCCAGCCAGACTCCTGGTCCTCTTTCCCACACCTCTGCTaGAGACACAGATTTCCATTGACAGCAGGTGACCCATCCTGGGCC | + |
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Preference number: 5 (lower is better) Translates to: APSQPDSWSSFPHLC*RHRFPLTAGDPSWA Trigger: GGCCCAGGATGGGTCACCTGCTGTCAATGGAAATCTGTGTCTGCAGCAGAGGTGTGGGAAAGAGGACCAGGAGTCTGGCTGGGAAGGAGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR CAA 90 bp | CGCCCTTCGCAGGTGGCTGCAGAACCCCCTTGCTCCCCCGTCCCTTCTCCTTTCATCCAAAGCGAGATGTaGCAAAGAAACAGAAAGGCC | + |
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Preference number: 5 (lower is better) Translates to: RPSQVAAEPPCSPVPSPFIQSEM*QRNRKA Trigger: GGCCTTTCTGTTTCTTTGCAACATCTCGCTTTGGAT...GAAAGGAGAAGGGACGGGGGAGCAAGGGGGTTCTGCAGCCACCTGCGAAGGGCG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR CAA 90 bp | CTCTGGTCCTTTTTGAGAGCAGCAGGCCATCTCTCCAACCCCAAGACCCAACTCGACTCGCTCTTGGATTaGGAGCGCCCGATGTGGATC | + |
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Preference number: 5 (lower is better) Translates to: LWSFLRAAGHLSNPKTQLDSLLD*ERPMWI Trigger: GATCCACATCGGGCGCTCCAAATCCAAGAGCGAGTC...GAGTTGGGTCTTGGGGTTGGAGAGATGGCCTGCTGCTCTCAAAAAGGACCAGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR CAA 90 bp | CTCTGGTCCTTTTTGAGAGCAGCAGGCCATCTCTCCAACCCCAAGACCCAACTCAGACACAGATTTCCATaGACAGCAGGTGACCCATCC | + |
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Preference number: 5 (lower is better) Translates to: LWSFLRAAGHLSNPKTQLRHRFP*TAGDPS Trigger: GGATGGGTCACCTGCTGTCAATGGAAATCTGTGTCT...GAGTTGGGTCTTGGGGTTGGAGAGATGGCCTGCTGCTCTCAAAAAGGACCAGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR CAA 90 bp | ACTCTTGCATGTGAGTGCTGGTGTCCCTGGAAACCTGAGAAGAATATCAGATCTGACTCGCTCTTGGATTaGGAGCGCCCGATGTGGATC | + |
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Preference number: 5 (lower is better) Translates to: TLACECWCPWKPEKNIRSDSLLD*ERPMWI Trigger: GATCCACATCGGGCGCTCCAAATCCAAGAGCGAGTC...AGATCTGATATTCTTCTCAGGTTTCCAGGGACACCAGCACTCACATGCAAGAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR CAA 90 bp | CTCTGGTCCTTTTTGAGAGCAGCAGGCCATCTCTCCAACCCCAAGACCCAACTCATCCAAAGCGAGATGTaGCAAAGAAACAGAAAGGCC | + |
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Preference number: 5 (lower is better) Translates to: LWSFLRAAGHLSNPKTQLIQSEM*QRNRKA Trigger: GGCCTTTCTGTTTCTTTGCAACATCTCGCTTTGGAT...GAGTTGGGTCTTGGGGTTGGAGAGATGGCCTGCTGCTCTCAAAAAGGACCAGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR CAA 90 bp | GGATCACCTTCTTCTAAAACACAGGGTCTCAGCCAGAAAATGCTCAACTCATTTAGAGCCGACTCGCTCTaGGATTTGGAGCGCCCGATG | + |
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Preference number: 5 (lower is better) Translates to: GSPSSKTQGLSQKMLNSFRADSL*DLERPM Trigger: CATCGGGCGCTCCAAATCCAAGAGCGAGTCGGCTCT...AAATGAGTTGAGCATTTTCTGGCTGAGACCCTGTGTTTTAGAAGAAGGTGATCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR CAA 90 bp | GGATCTGATTGGAATTGGCTAAGGACAGGCTCCAGCTATCTTGTGCAGTTGATTAAAACGATGGTGATGTaGCCAAAGCCCAGAGTGATC | + |
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Preference number: 5 (lower is better) Translates to: GSDWNWLRTGSSYLVQLIKTMVM*PKPRVI Trigger: GATCACTCTGGGCTTTGGCAACATCACCATCGTTTT...AATCAACTGCACAAGATAGCTGGAGCCTGTCCTTAGCCAATTCCAATCAGATCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR CAA 90 bp | ACTCTTGCATGTGAGTGCTGGTGTCCCTGGAAACCTGAGAAGAATATCAGATCTAAAACGATGGTGATGTaGCCAAAGCCCAGAGTGATC | + |
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Preference number: 5 (lower is better) Translates to: TLACECWCPWKPEKNIRSKTMVM*PKPRVI Trigger: GATCACTCTGGGCTTTGGCAACATCACCATCGTTTT...AGATCTGATATTCTTCTCAGGTTTCCAGGGACACCAGCACTCACATGCAAGAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS-3UTR CAA 90 bp | GGATCACCTTCTTCTAAAACACAGGGTCTCAGCCAGAAAATGCTCAACTCATTTAGACACAGATTTCCATaGACAGCAGGTGACCCATCC | + |
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Preference number: 5 (lower is better) Translates to: GSPSSKTQGLSQKMLNSFRHRFP*TAGDPS Trigger: GGATGGGTCACCTGCTGTCAATGGAAATCTGTGTCT...AAATGAGTTGAGCATTTTCTGGCTGAGACCCTGTGTTTTAGAAGAAGGTGATCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS TCA 72 bp | TGCCGCGATCCCCGACGGCGCGGCACGCGAGGAGCCTaGGGATGCTGCGGGAGAAGAGGGCGCGCCCGGGCC | + |
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Preference number: 6 (lower is better) Translates to: CRDPRRRGTRGA*GCCGRRGRARA Trigger: GGCCCGGGCGCGCCCTCTTCTCCCGCAGCATCCTCAGGCTCCTCGCGTGCCGCGCCGTCGGGGATCGCGGCA 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114099.6 |
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| CDS GCA 72 bp | GGCCATCCCCTGGCTCCCGAGAGTGGATGCAGCCAGTaGGGCAGCCTCGCTGCTGCAGACGGTGACCACACG | + |
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Preference number: 6 (lower is better) Translates to: GHPLAPESGCSQ*GSLAAADGDHT Trigger: CGTGTGGTCACCGTCTGCAGCAGCGAGGCTGCCGCACTGGCTGCATCCACTCTCGGGAGCCAGGGGATGGCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS GCA 72 bp | CCCATCCTGGGCCATCCCCTGGCTCCCGAGAGTGGATaGAGCCAGTGCGGCAGCCTCGCTGCTGCAGACGGT | + |
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Preference number: 6 (lower is better) Translates to: PILGHPLAPESG*SQCGSLAAADG Trigger: ACCGTCTGCAGCAGCGAGGCTGCCGCACTGGCTGCATCCACTCTCGGGAGCCAGGGGATGGCCCAGGATGGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS CCA 72 bp | CCATTGACAGCAGGTGACCCATCCTGGGCCATCCCCTaGCTCCCGAGAGTGGATGCAGCCAGTGCGGCAGCC | + |
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Preference number: 6 (lower is better) Translates to: PLTAGDPSWAIP*LPRVDAASAAA Trigger: GGCTGCCGCACTGGCTGCATCCACTCTCGGGAGCCAGGGGATGGCCCAGGATGGGTCACCTGCTGTCAATGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS TCA 72 bp | CCTCTGCTGCAGACACAGATTTCCATTGACAGCAGGTaGCCCATCCTGGGCCATCCCCTGGCTCCCGAGAGT | + |
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Preference number: 6 (lower is better) Translates to: PLLQTQISIDSR*PILGHPLAPES Trigger: ACTCTCGGGAGCCAGGGGATGGCCCAGGATGGGTCACCTGCTGTCAATGGAAATCTGTGTCTGCAGCAGAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS CCA 72 bp | AGACACAGATTTCCATTGACAGCAGGTGACCCATCCTaGGCCATCCCCTGGCTCCCGAGAGTGGATGCAGCC | + |
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Preference number: 6 (lower is better) Translates to: RHRFPLTAGDPS*AIPWLPRVDAA Trigger: GGCTGCATCCACTCTCGGGAGCCAGGGGATGGCCCAGGATGGGTCACCTGCTGTCAATGGAAATCTGTGTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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| CDS GCA 72 bp | ATGATATCCTTAGCATGGCCCCAGAGGAAATACACCTaGAATAGGGTATGCACTGCATGGGTGACTGGGAAA | + |
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Preference number: 6 (lower is better) Translates to: MISLAWPQRKYT*NRVCTAWVTGK Trigger: TTTCCCAGTCACCCATGCAGTGCATACCCTATTGCAGGTGTATTTCCTCTGGGGCCATGCTAAGGATATCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063136.15 ENSMUST00000114099.6 |
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