Pregenerated sensors for OSTN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000052276Ensembl transcript IDs: ENSMUST00000066852.9
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TGCACAACTCAACTAAAACCACAGCAACACTATGACGTGATGGTCTaGGGAGGATCAAGCTTTGGGAAGGTTTGCGAAAGGCCAATTCCT | + |
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Preference number: 1 (lower is better) Translates to: CTTQLKPQQHYDVMV*GGSSFGKVCERPIP Trigger: AGGAATTGGCCTTTCGCAAACCTTCCCAAAGCTTGATCCTCCCCAGACCATCACGTCATAGTGTTGCTGTGGTTTTAGTTGAGTTGTGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066852.9 |
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| 3UTR GCA 90 bp | ATCATTGAAAAATACTTTCAGAGATATCCATGCACTGAAATGATCTaGACAACTCAACTAAAACCACAGCAACACTATGACGTGATGGTC | + |
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Preference number: 1 (lower is better) Translates to: IIEKYFQRYPCTEMI*TTQLKPQQHYDVMV Trigger: GACCATCACGTCATAGTGTTGCTGTGGTTTTAGTTGAGTTGTGCAGATCATTTCAGTGCATGGATATCTCTGAAAGTATTTTTCAATGAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066852.9 |
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| 3UTR-3UTR GCA 90 bp | GAACAATTCACCCCTAGGCTGGTAGAAGTAAACAAGCCAGGCAGTAACTTCTTTTTTCAGAGATATCCATaGACTGAAATGATCTGCACA | + |
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Preference number: 2 (lower is better) Translates to: EQFTPRLVEVNKPGSNFFFQRYP*TEMICT Trigger: TGTGCAGATCATTTCAGTGCATGGATATCTCTGAAA...AAAGAAGTTACTGCCTGGCTTGTTTACTTCTACCAGCCTAGGGGTGAATTGTTC 41% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000066852.9 |
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| 3UTR GCA 72 bp | AAATACTTTCAGAGATATCCATGCACTGAAATGATCTaGACAACTCAACTAAAACCACAGCAACACTATGAC | + |
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Preference number: 3 (lower is better) Translates to: KYFQRYPCTEMI*TTQLKPQQHYD Trigger: GTCATAGTGTTGCTGTGGTTTTAGTTGAGTTGTGCAGATCATTTCAGTGCATGGATATCTCTGAAAGTATTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066852.9 |
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| CDS-3UTR TCA 90 bp | GGTCTGGGGAGGATCAAGCTTTGGGAAGGTTTGCGAAAGGCCAATTCCTTGACACTCTACAGACCCAGCTaGGAGTCTGTCAAGGGGAGA | + |
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Preference number: 4 (lower is better) Translates to: GLGRIKLWEGLRKANSLTLYRPS*ESVKGR Trigger: TCTCCCCTTGACAGACTCTCAGCTGGGTCTGTAGAG...TGTCAAGGAATTGGCCTTTCGCAAACCTTCCCAAAGCTTGATCCTCCCCAGACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066852.9 |
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| CDS-3UTR CCA 90 bp | GGTCTGGGGAGGATCAAGCTTTGGGAAGGTTTGCGAAAGGCCAATTCCTTGACACTGACTTCTCTTCTCTaGCTGTGGGTGGAGACTGCA | + |
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Preference number: 4 (lower is better) Translates to: GLGRIKLWEGLRKANSLTLTSLL*LWVETA Trigger: TGCAGTCTCCACCCACAGCCAGAGAAGAGAAGTCAG...TGTCAAGGAATTGGCCTTTCGCAAACCTTCCCAAAGCTTGATCCTCCCCAGACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066852.9 |
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| CDS-3UTR GCA 90 bp | GGTCTGGGGAGGATCAAGCTTTGGGAAGGTTTGCGAAAGGCCAATTCCTTGACACTTTGTTTCCCTCTATaGTCTACAGACCCAGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: GLGRIKLWEGLRKANSLTLCFPL*STDPAE Trigger: CTCAGCTGGGTCTGTAGAGCATAGAGGGAAACAAAG...TGTCAAGGAATTGGCCTTTCGCAAACCTTCCCAAAGCTTGATCCTCCCCAGACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066852.9 |
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| CDS-3UTR GCA 90 bp | GGTCTGGGGAGGATCAAGCTTTGGGAAGGTTTGCGAAAGGCCAATTCCTTGACAGATGAAGTGTGTACTTaGCAATCTCCAGTCCAGCAT | + |
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Preference number: 4 (lower is better) Translates to: GLGRIKLWEGLRKANSLTDEVCT*QSPVQH Trigger: ATGCTGGACTGGAGATTGGCAAGTACACACTTCATC...TGTCAAGGAATTGGCCTTTCGCAAACCTTCCCAAAGCTTGATCCTCCCCAGACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066852.9 |
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| CDS-3UTR TCA 90 bp | GTAGTGAACTTCACTGAAGTGTCTTCTATAGTTCTGTGCCATCTCACACAAGTACGAAAGCTCAGTGGCTaGCTTCTCTTCTCTGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: VVNFTEVSSIVLCHLTQVRKLSG*LLFSGC Trigger: ACAGCCAGAGAAGAGAAGTCAGCCACTGAGCTTTCG...TACTTGTGTGAGATGGCACAGAACTATAGAAGACACTTCAGTGAAGTTCACTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066852.9 |
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| CDS-3UTR CCA 90 bp | AGGATCAAGCTTTGGGAAGGTTTGCGAAAGGCCAATTCCTTGACAAAAGGGGTATACCAATCCGATCCATaGGAATACCAAACCGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: RIKLWEGLRKANSLTKGVYQSDP*EYQTAF Trigger: AAAAGCGGTTTGGTATTCCCATGGATCGGATTGGTA...TACCCCTTTTGTCAAGGAATTGGCCTTTCGCAAACCTTCCCAAAGCTTGATCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066852.9 |
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| 3UTR CAA 72 bp | ATCAAGCTTTGGGAAGGTTTGCGAAAGGCCAATTCCTaGACAAAAGGGGTAGTGAACTTCACTGAAGTGTCT | + |
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Preference number: 4 (lower is better) Translates to: IKLWEGLRKANS*TKGVVNFTEVS Trigger: AGACACTTCAGTGAAGTTCACTACCCCTTTTGTCAAGGAATTGGCCTTTCGCAAACCTTCCCAAAGCTTGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066852.9 |
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| CDS-3UTR CCA 90 bp | AGGATCAAGCTTTGGGAAGGTTTGCGAAAGGCCAATTCCTTGACAAAAGGGGTAAGCTTCTCTTTTTCTTaGTCTCAAATACGTCATTCT | + |
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Preference number: 4 (lower is better) Translates to: RIKLWEGLRKANSLTKGVSFSFS*SQIRHS Trigger: AGAATGACGTATTTGAGACCAAGAAAAAGAGAAGCT...TACCCCTTTTGTCAAGGAATTGGCCTTTCGCAAACCTTCCCAAAGCTTGATCCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000066852.9 |
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| CDS TCA 90 bp | ATCTACTGCTTTCCTTTGTTTCCCTCTATGCTCTACAGACCCAGCTaGGAGTCTGTCAAGGGGAGACCCAAAGCCAGAGAAGCTTCTCTT | + |
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Preference number: 5 (lower is better) Translates to: IYCFPLFPSMLYRPS*ESVKGRPKAREASL Trigger: AAGAGAAGCTTCTCTGGCTTTGGGTCTCCCCTTGACAGACTCTCAGCTGGGTCTGTAGAGCATAGAGGGAAACAAAGGAAAGCAGTAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066852.9 |
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| CDS-3UTR CAA 90 bp | GTAGTGAACTTCACTGAAGTGTCTTCTATAGTTCTGTGCCATCTCACACAAGTAATCTACTGCTTTCCTTaGTTTCCCTCTATGCTCTAC | + |
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Preference number: 5 (lower is better) Translates to: VVNFTEVSSIVLCHLTQVIYCFP*FPSMLY Trigger: GTAGAGCATAGAGGGAAACAAAGGAAAGCAGTAGAT...TACTTGTGTGAGATGGCACAGAACTATAGAAGACACTTCAGTGAAGTTCACTAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066852.9 |
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| CDS CAA 72 bp | ACTTCTCTTCTCTGGCTGTGGGTGGAGACTGCAAGCTaGCTGTTCCAAACTCCTGTGATGCTAAGTCCACAG | + |
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Preference number: 6 (lower is better) Translates to: TSLLWLWVETAS*LFQTPVMLSPQ Trigger: CTGTGGACTTAGCATCACAGGAGTTTGGAACAGCAAGCTTGCAGTCTCCACCCACAGCCAGAGAAGAGAAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066852.9 |
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| CDS TCA 72 bp | TTTCCTTTGTTTCCCTCTATGCTCTACAGACCCAGCTaGGAGTCTGTCAAGGGGAGACCCAAAGCCAGAGAA | + |
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Preference number: 6 (lower is better) Translates to: FPLFPSMLYRPS*ESVKGRPKARE Trigger: TTCTCTGGCTTTGGGTCTCCCCTTGACAGACTCTCAGCTGGGTCTGTAGAGCATAGAGGGAAACAAAGGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066852.9 |
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| CDS CAA 72 bp | AGGGGAGACCCAAAGCCAGAGAAGCTTCTCTTTTTCTaGGTCTCAAATACGTCATTCTCTAAGGACACCAGA | + |
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Preference number: 6 (lower is better) Translates to: RGDPKPEKLLFF*VSNTSFSKDTR Trigger: TCTGGTGTCCTTAGAGAATGACGTATTTGAGACCAAGAAAAAGAGAAGCTTCTCTGGCTTTGGGTCTCCCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066852.9 |
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| CDS CAA 90 bp | AGTCTGTCAAGGGGAGACCCAAAGCCAGAGAAGCTTCTCTTTTTCTaGGTCTCAAATACGTCATTCTCTAAGGACACCAGATCATCAAGA | + |
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Preference number: 6 (lower is better) Translates to: SLSRGDPKPEKLLFF*VSNTSFSKDTRSSR Trigger: TCTTGATGATCTGGTGTCCTTAGAGAATGACGTATTTGAGACCAAGAAAAAGAGAAGCTTCTCTGGCTTTGGGTCTCCCCTTGACAGACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066852.9 |
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| CDS CAA 90 bp | GCCGGTTTCTACCAATCCGATCCATGGGAATACCAAACCGCTTTTTaGAATGATCTACTGCTTTCCTTTGTTTCCCTCTATGCTCTACAG | + |
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Preference number: 6 (lower is better) Translates to: AGFYQSDPWEYQTAF*NDLLLSFVSLYALQ Trigger: CTGTAGAGCATAGAGGGAAACAAAGGAAAGCAGTAGATCATTCAAAAAAGCGGTTTGGTATTCCCATGGATCGGATTGGTAGAAACCGGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066852.9 |
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| CDS CAA 72 bp | TACCAATCCGATCCATGGGAATACCAAACCGCTTTTTaGAATGATCTACTGCTTTCCTTTGTTTCCCTCTAT | + |
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Preference number: 6 (lower is better) Translates to: YQSDPWEYQTAF*NDLLLSFVSLY Trigger: ATAGAGGGAAACAAAGGAAAGCAGTAGATCATTCAAAAAAGCGGTTTGGTATTCCCATGGATCGGATTGGTA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066852.9 |
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