Pregenerated sensors for OSTM1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038280Ensembl transcript IDs: ENSMUST00000040718.6, ENSMUST00000105497.8, ENSMUST00000144806.8
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTGCTAGAAATATGCCAAAGAAGAACTAGTTTCCTGACAGTGAGATaGGTAATTTCGTTTCAGTCATGTGACTTTCATCTTTCCCGTAAC | + |
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Preference number: 1 (lower is better) Translates to: LLEICQRRTSFLTVR*VISFQSCDFHLSRN Trigger: GTTACGGGAAAGATGAAAGTCACATGACTGAAACGAAATTACCCATCTCACTGTCAGGAAACTAGTTCTTCTTTGGCATATTTCTAGCAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| 3UTR-3UTR TCA 90 bp | ACTCTGGGACTAAGACTAGCCTGCTCTCACACTCTGCATATGTGGGAAACATACCTTGAGAAATACAACTaGGTGACACTGAAACAAGCA | + |
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Preference number: 2 (lower is better) Translates to: TLGLRLACSHTLHMWETYLEKYN*VTLKQA Trigger: TGCTTGTTTCAGTGTCACTCAGTTGTATTTCTCAAG...GTATGTTTCCCACATATGCAGAGTGTGAGAGCAGGCTAGTCTTAGTCCCAGAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| 3UTR-3UTR CCA 90 bp | ACTCTGGGACTAAGACTAGCCTGCTCTCACACTCTGCATATGTGGGAAACATACGAGCCTGCTACCATTTaGCAAGTATGTTTCTTTTTC | + |
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Preference number: 2 (lower is better) Translates to: TLGLRLACSHTLHMWETYEPATI*QVCFFF Trigger: GAAAAAGAAACATACTTGCCAAATGGTAGCAGGCTC...GTATGTTTCCCACATATGCAGAGTGTGAGAGCAGGCTAGTCTTAGTCCCAGAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| 3UTR CAA 90 bp | GTGAGCATCCCTCAGGTCCCTGTCTATTTTCTGAAATTTAAGCTCTaGTGTTTGTCCTTGTTTCTCCCCAAATCTCCAAATATTCCAAGA | + |
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Preference number: 2 (lower is better) Translates to: VSIPQVPVYFLKFKL*CLSLFLPKSPNIPR Trigger: TCTTGGAATATTTGGAGATTTGGGGAGAAACAAGGACAAACACAAGAGCTTAAATTTCAGAAAATAGACAGGGACCTGAGGGATGCTCAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| 3UTR-3UTR TCA 90 bp | CTGACAGTGAGATGGGTAATTTCGTTTCAGTCATGTGACTTTCATCTTTCCCGTTGTGGAATCACTCTCTaGAAACTGTTAAGGAGGTTT | + |
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Preference number: 2 (lower is better) Translates to: LTVRWVISFQSCDFHLSRCGITL*KLLRRF Trigger: AAACCTCCTTAACAGTTTTCAGAGAGTGATTCCACA...ACGGGAAAGATGAAAGTCACATGACTGAAACGAAATTACCCATCTCACTGTCAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| 3UTR-3UTR TCA 90 bp | GAAATTCATGATGCAAATCCCTGGCATAAGATGAATCCATCTTGTCCTCAAAGGCAGGAAAAGGGAATTTaGGAACCCTTATTCAGAATA | + |
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Preference number: 2 (lower is better) Translates to: EIHDANPWHKMNPSCPQRQEKGI*EPLFRI Trigger: TATTCTGAATAAGGGTTCTCAAATTCCCTTTTCCTG...CCTTTGAGGACAAGATGGATTCATCTTATGCCAGGGATTTGCATCATGAATTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| 3UTR CCA 72 bp | TCGTTTCAGTCATGTGACTTTCATCTTTCCCGTAACTaGGAGGCTTCCTGTGCGAGCCTGTCAACCGAGTCA | + |
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Preference number: 3 (lower is better) Translates to: SFQSCDFHLSRN*EASCASLSTES Trigger: TGACTCGGTTGACAGGCTCGCACAGGAAGCCTCCCAGTTACGGGAAAGATGAAAGTCACATGACTGAAACGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| 3UTR TCA 72 bp | GTGCTTCAAATCAAGACAGGAACAATGACAGCACAATaGACCCCGGCACATCTAGTGGATCACAGCGTCGTC | + |
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Preference number: 3 (lower is better) Translates to: VLQIKTGTMTAQ*TPAHLVDHSVV Trigger: GACGACGCTGTGATCCACTAGATGTGCCGGGGTTCATTGTGCTGTCATTGTTCCTGTCTTGATTTGAAGCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| 3UTR-3UTR CAA 90 bp | ACTCTGGGACTAAGACTAGCCTGCTCTCACACTCTGCATATGTGGGAAACATACCACAGTATGACACACTaGGGTGACATTCGACTTGAA | + |
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Preference number: 3 (lower is better) Translates to: TLGLRLACSHTLHMWETYHSMTH*GDIRLE Trigger: TTCAAGTCGAATGTCACCCAAGTGTGTCATACTGTG...GTATGTTTCCCACATATGCAGAGTGTGAGAGCAGGCTAGTCTTAGTCCCAGAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| 3UTR CCA 72 bp | AATTCACTTAAGTTAATCACTGAGCCTGCTACCATTTaGCAAGTATGTTTCTTTTTCAGAGTGGGCTCCCAG | + |
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Preference number: 3 (lower is better) Translates to: NSLKLITEPATI*QVCFFFRVGSQ Trigger: CTGGGAGCCCACTCTGAAAAAGAAACATACTTGCCAAATGGTAGCAGGCTCAGTGATTAACTTAAGTGAATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| 3UTR-3UTR CAA 90 bp | CTGACAGTGAGATGGGTAATTTCGTTTCAGTCATGTGACTTTCATCTTTCCCGTCTGAAATTTAAGCTCTaGTGTTTGTCCTTGTTTCTC | + |
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Preference number: 3 (lower is better) Translates to: LTVRWVISFQSCDFHLSRLKFKL*CLSLFL Trigger: GAGAAACAAGGACAAACACAAGAGCTTAAATTTCAG...ACGGGAAAGATGAAAGTCACATGACTGAAACGAAATTACCCATCTCACTGTCAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| 3UTR CCA 72 bp | ATATGCCAAAGAAGAACTAGTTTCCTGACAGTGAGATaGGTAATTTCGTTTCAGTCATGTGACTTTCATCTT | + |
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Preference number: 3 (lower is better) Translates to: ICQRRTSFLTVR*VISFQSCDFHL Trigger: AAGATGAAAGTCACATGACTGAAACGAAATTACCCATCTCACTGTCAGGAAACTAGTTCTTCTTTGGCATAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR TCA 90 bp | CTTAAGTTAATCACTGAGCCTGCTACCATTTGGCAAGTATGTTTCTTTTTCAGAGGTGCCGACTGCTGGTaGAGGGGAGCGCGCACAGGG | + |
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Preference number: 4 (lower is better) Translates to: LKLITEPATIWQVCFFFRGADCW*RGARTG Trigger: CCCTGTGCGCGCTCCCCTTCACCAGCAGTCGGCACC...TCTGAAAAAGAAACATACTTGCCAAATGGTAGCAGGCTCAGTGATTAACTTAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR GCA 90 bp | CTGACAGTGAGATGGGTAATTTCGTTTCAGTCATGTGACTTTCATCTTTCCCGTTCCGCAAAGCCTGGGTaGCGACTGCTGGTGAAGGGG | + |
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Preference number: 4 (lower is better) Translates to: LTVRWVISFQSCDFHLSRSAKPG*RLLVKG Trigger: CCCCTTCACCAGCAGTCGGCACCCAGGCTTTGCGGA...ACGGGAAAGATGAAAGTCACATGACTGAAACGAAATTACCCATCTCACTGTCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR TCA 90 bp | ACTCTGGGACTAAGACTAGCCTGCTCTCACACTCTGCATATGTGGGAAACATACCAGGTGGCATTTTCTTaGATGTTGGCAAAACTGGTG | + |
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Preference number: 4 (lower is better) Translates to: TLGLRLACSHTLHMWETYQVAFS*MLAKLV Trigger: CACCAGTTTTGCCAACATTCAAGAAAATGCCACCTG...GTATGTTTCCCACATATGCAGAGTGTGAGAGCAGGCTAGTCTTAGTCCCAGAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR GCA 90 bp | TTCCACCGGATTAACCAACAAAACCATCAACTTCTACATCTTGAGAAATACAACTGCACCTCCAACAGCTaGTGCTCCGACAGCAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: FHRINQQNHQLLHLEKYNCTSNS*CSDSRS Trigger: GGACCTGCTGTCGGAGCAGCAGCTGTTGGAGGTGCA...GTTGTATTTCTCAAGATGTAGAAGTTGATGGTTTTGTTGGTTAATCCGGTGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR GCA 90 bp | CTTAAGTTAATCACTGAGCCTGCTACCATTTGGCAAGTATGTTTCTTTTTCAGAGACAGGGTCAAGTCCTaGACCTCCAACAGCTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: LKLITEPATIWQVCFFFRDRVKS*TSNSCC Trigger: GCAGCAGCTGTTGGAGGTGCAGGACTTGACCCTGTC...TCTGAAAAAGAAACATACTTGCCAAATGGTAGCAGGCTCAGTGATTAACTTAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR GCA 90 bp | TTCCACCGGATTAACCAACAAAACCATCAACTTCTACATCTTGAGAAATACAACCGGTCAGCTCGGCGCTaGTATTGGCGAAGTCCATCA | + |
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Preference number: 4 (lower is better) Translates to: FHRINQQNHQLLHLEKYNRSARR*YWRSPS Trigger: TGATGGACTTCGCCAATAGCAGCGCCGAGCTGACCG...GTTGTATTTCTCAAGATGTAGAAGTTGATGGTTTTGTTGGTTAATCCGGTGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR GCA 90 bp | CTGACAGTGAGATGGGTAATTTCGTTTCAGTCATGTGACTTTCATCTTTCCCGTGTTGTCCATCTTGATTaGGACCTGTTGGAAGAGCGG | + |
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Preference number: 4 (lower is better) Translates to: LTVRWVISFQSCDFHLSRVVHLD*DLLEER Trigger: CCGCTCTTCCAACAGGTCGCAATCAAGATGGACAAC...ACGGGAAAGATGAAAGTCACATGACTGAAACGAAATTACCCATCTCACTGTCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR TCA 90 bp | GAAATTCATGATGCAAATCCCTGGCATAAGATGAATCCATCTTGTCCTCAAAGGGCGTTTCTTTTGCTCTaGGTGAAGGAAGCTACTGAG | + |
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Preference number: 4 (lower is better) Translates to: EIHDANPWHKMNPSCPQRAFLLL*VKEATE Trigger: CTCAGTAGCTTCCTTCACTCAGAGCAAAAGAAACGC...CCTTTGAGGACAAGATGGATTCATCTTATGCCAGGGATTTGCATCATGAATTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR GCA 90 bp | GAAATTCATGATGCAAATCCCTGGCATAAGATGAATCCATCTTGTCCTCAAAGGACCATGAGAACTATCTaGATTCTGTCTGCCGTCAGG | + |
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Preference number: 4 (lower is better) Translates to: EIHDANPWHKMNPSCPQRTMRTI*ILSAVR Trigger: CCTGACGGCAGACAGAATGCAGATAGTTCTCATGGT...CCTTTGAGGACAAGATGGATTCATCTTATGCCAGGGATTTGCATCATGAATTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR GCA 90 bp | ACTCTGGGACTAAGACTAGCCTGCTCTCACACTCTGCATATGTGGGAAACATACGCTCAGGTTTTTATATaGCTCTTTACAGTTTCTGCA | + |
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Preference number: 4 (lower is better) Translates to: TLGLRLACSHTLHMWETYAQVFI*LFTVSA Trigger: TGCAGAAACTGTAAAGAGGCATATAAAAACCTGAGC...GTATGTTTCCCACATATGCAGAGTGTGAGAGCAGGCTAGTCTTAGTCCCAGAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR GCA 90 bp | TTCCACCGGATTAACCAACAAAACCATCAACTTCTACATCTTGAGAAATACAACAGGAGACTGTATGTGTaGCCCTGCAGGTTATGCTCA | + |
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Preference number: 4 (lower is better) Translates to: FHRINQQNHQLLHLEKYNRRLYV*PCRLCS Trigger: TGAGCATAACCTGCAGGGGCACACATACAGTCTCCT...GTTGTATTTCTCAAGATGTAGAAGTTGATGGTTTTGTTGGTTAATCCGGTGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR TCA 90 bp | AAATTTAAACACAGTATGACACACTTGGGTGACATTCGACTTGAACTACTAACATTCAGTTTCTGCATTTaGCTGTACAGGAGGCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: KFKHSMTHLGDIRLELLTFSFCI*LYRRLR Trigger: CCTGAGCCTCCTGTACAGTCAAATGCAGAAACTGAA...TGTTAGTAGTTCAAGTCGAATGTCACCCAAGTGTGTCATACTGTGTTTAAATTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR GCA 90 bp | CTTAAGTTAATCACTGAGCCTGCTACCATTTGGCAAGTATGTTTCTTTTTCAGACCGAGTAATGTTCATTaGATCCTCCACATCGATGCA | + |
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Preference number: 4 (lower is better) Translates to: LKLITEPATIWQVCFFFRPSNVH*ILHIDA Trigger: TGCATCGATGTGGAGGATGCAATGAACATTACTCGG...TCTGAAAAAGAAACATACTTGCCAAATGGTAGCAGGCTCAGTGATTAACTTAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| 3UTR CAA 72 bp | CCTCAGGTCCCTGTCTATTTTCTGAAATTTAAGCTCTaGTGTTTGTCCTTGTTTCTCCCCAAATCTCCAAAT | + |
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Preference number: 4 (lower is better) Translates to: PQVPVYFLKFKL*CLSLFLPKSPN Trigger: ATTTGGAGATTTGGGGAGAAACAAGGACAAACACAAGAGCTTAAATTTCAGAAAATAGACAGGGACCTGAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR TCA 90 bp | TTCCACCGGATTAACCAACAAAACCATCAACTTCTACATCTTGAGAAATACAACGTCCTCTGTGTTGTTTaGCAAATCCTCACCATTGTT | + |
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Preference number: 4 (lower is better) Translates to: FHRINQQNHQLLHLEKYNVLCVV*QILTIV Trigger: AACAATGGTGAGGATTTGTCAAACAACACAGAGGAC...GTTGTATTTCTCAAGATGTAGAAGTTGATGGTTTTGTTGGTTAATCCGGTGGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR TCA 90 bp | TTCCACCGGATTAACCAACAAAACCATCAACTTCTACATCTTGAGAAATACAACGACGTTTGGGTAGAATaGGTTTGCGTTTCTTTTGCT | + |
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Preference number: 4 (lower is better) Translates to: FHRINQQNHQLLHLEKYNDVWVE*VCVSFA Trigger: AGCAAAAGAAACGCAAACTCATTCTACCCAAACGTC...GTTGTATTTCTCAAGATGTAGAAGTTGATGGTTTTGTTGGTTAATCCGGTGGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR GCA 90 bp | GAAATTCATGATGCAAATCCCTGGCATAAGATGAATCCATCTTGTCCTCAAAGGCCTCTTTACAGTTTCTaGACACTTCGGAGTAATTTT | + |
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Preference number: 4 (lower is better) Translates to: EIHDANPWHKMNPSCPQRPLYSF*TLRSNF Trigger: AAAATTACTCCGAAGTGTGCAGAAACTGTAAAGAGG...CCTTTGAGGACAAGATGGATTCATCTTATGCCAGGGATTTGCATCATGAATTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR CCA 90 bp | CTTAAGTTAATCACTGAGCCTGCTACCATTTGGCAAGTATGTTTCTTTTTCAGACATTTTCTTGAATGTTaGCAAAACTGGTGCTCGACT | + |
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Preference number: 4 (lower is better) Translates to: LKLITEPATIWQVCFFFRHFLEC*QNWCST Trigger: AGTCGAGCACCAGTTTTGCCAACATTCAAGAAAATG...TCTGAAAAAGAAACATACTTGCCAAATGGTAGCAGGCTCAGTGATTAACTTAAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS TCA 90 bp | GCTGCTCCGACAGCAGGTCCGCAAAGCCTGGGTGCCGACTGCTGGTaGAGGGGAGCGCGCACAGGGCGCACCTCCACCGCAGCAGCTGCA | + |
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Preference number: 5 (lower is better) Translates to: AAPTAGPQSLGADCW*RGARTGRTSTAAAA Trigger: TGCAGCTGCTGCGGTGGAGGTGCGCCCTGTGCGCGCTCCCCTTCACCAGCAGTCGGCACCCAGGCTTTGCGGACCTGCTGTCGGAGCAGC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS GCA 90 bp | ACCTCCAACAGCTGCTGCTCCGACAGCAGGTCCGCAAAGCCTGGGTaGCGACTGCTGGTGAAGGGGAGCGCGCACAGGGCGCACCTCCAC | + |
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Preference number: 5 (lower is better) Translates to: TSNSCCSDSRSAKPG*RLLVKGSAHRAHLH Trigger: GTGGAGGTGCGCCCTGTGCGCGCTCCCCTTCACCAGCAGTCGGCACCCAGGCTTTGCGGACCTGCTGTCGGAGCAGCAGCTGTTGGAGGT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS GCA 90 bp | GGAAGAGCGGGTAGCAGGTCTGGCAGAGGCGCACGGGCCGAGCGCTaGGCACCATACAGGCGGTCAGCTCGGCGCTGCTATTGGCGAAGT | + |
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Preference number: 5 (lower is better) Translates to: GRAGSRSGRGARAER*APYRRSARRCYWRS Trigger: ACTTCGCCAATAGCAGCGCCGAGCTGACCGCCTGTATGGTGCGCAGCGCTCGGCCCGTGCGCCTCTGCCAGACCTGCTACCCGCTCTTCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS CCA 90 bp | CTGCACCTCCAACAGCTGCTGCTCCGACAGCAGGTCCGCAAAGCCTaGGTGCCGACTGCTGGTGAAGGGGAGCGCGCACAGGGCGCACCT | + |
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Preference number: 5 (lower is better) Translates to: LHLQQLLLRQQVRKA*VPTAGEGERAQGAP Trigger: AGGTGCGCCCTGTGCGCGCTCCCCTTCACCAGCAGTCGGCACCCAGGCTTTGCGGACCTGCTGTCGGAGCAGCAGCTGTTGGAGGTGCAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS CCA 90 bp | GCCGAGCGCTGCGCACCATACAGGCGGTCAGCTCGGCGCTGCTATTaGCGAAGTCCATCAGCAGCTCCCGGCACTCAGGCTCCAGATCCG | + |
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Preference number: 5 (lower is better) Translates to: AERCAPYRRSARRCY*RSPSAAPGTQAPDP Trigger: CGGATCTGGAGCCTGAGTGCCGGGAGCTGCTGATGGACTTCGCCAATAGCAGCGCCGAGCTGACCGCCTGTATGGTGCGCAGCGCTCGGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS GCA 90 bp | CCCTGCAGCAAAGACAGGGTCAAGTCCTGCACCTCCAACAGCTGCTaGTCCGACAGCAGGTCCGCAAAGCCTGGGTGCCGACTGCTGGTG | + |
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Preference number: 5 (lower is better) Translates to: PCSKDRVKSCTSNSC*SDSRSAKPGCRLLV Trigger: CACCAGCAGTCGGCACCCAGGCTTTGCGGACCTGCTGTCGGAGCAGCAGCTGTTGGAGGTGCAGGACTTGACCCTGTCTTTGCTGCAGGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS GCA 90 bp | CTCGGAGGTATTCCCGATGTTTCGGCTGATGTTGTCCATCTTGATTaGGACCTGTTGGAAGAGCGGGTAGCAGGTCTGGCAGAGGCGCAC | + |
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Preference number: 5 (lower is better) Translates to: LGGIPDVSADVVHLD*DLLEERVAGLAEAH Trigger: GTGCGCCTCTGCCAGACCTGCTACCCGCTCTTCCAACAGGTCGCAATCAAGATGGACAACATCAGCCGAAACATCGGGAATACCTCCGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS GCA 90 bp | GCTGTTGAAAAACTCAGAGACCATGAGAACTATCTGCATTCTGTCTaGCGTCAGGAGACTTCCGCCACAGCGCGGGCCCTCGGAGGTATT | + |
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Preference number: 5 (lower is better) Translates to: AVEKLRDHENYLHSV*RQETSATARALGGI Trigger: AATACCTCCGAGGGCCCGCGCTGTGGCGGAAGTCTCCTGACGGCAGACAGAATGCAGATAGTTCTCATGGTCTCTGAGTTTTTCAACAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR CAA 90 bp | GAAATTCATGATGCAAATCCCTGGCATAAGATGAATCCATCTTGTCCTCAAAGGAGCTCGGCGCTGCTATaGGCGAAGTCCATCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: EIHDANPWHKMNPSCPQRSSALL*AKSISS Trigger: GCTGCTGATGGACTTCGCCAATAGCAGCGCCGAGCT...CCTTTGAGGACAAGATGGATTCATCTTATGCCAGGGATTTGCATCATGAATTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR CAA 90 bp | ACTCTGGGACTAAGACTAGCCTGCTCTCACACTCTGCATATGTGGGAAACATACCTGATGTTGTCCATCTaGATTGCGACCTGTTGGAAG | + |
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Preference number: 5 (lower is better) Translates to: TLGLRLACSHTLHMWETYLMLSI*IATCWK Trigger: CTTCCAACAGGTCGCAATCAAGATGGACAACATCAG...GTATGTTTCCCACATATGCAGAGTGTGAGAGCAGGCTAGTCTTAGTCCCAGAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR CAA 90 bp | CTGACAGTGAGATGGGTAATTTCGTTTCAGTCATGTGACTTTCATCTTTCCCGTGTCTCAGGCTCAGCCTaGTTCTCAAGCCCGTTCAGT | + |
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Preference number: 5 (lower is better) Translates to: LTVRWVISFQSCDFHLSRVSGSA*FSSPFS Trigger: ACTGAACGGGCTTGAGAACAAGGCTGAGCCTGAGAC...ACGGGAAAGATGAAAGTCACATGACTGAAACGAAATTACCCATCTCACTGTCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR CAA 90 bp | AAATTTAAACACAGTATGACACACTTGGGTGACATTCGACTTGAACTACTAACACTTGATTGCGACCTGTaGGAAGAGCGGGTAGCAGGT | + |
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Preference number: 5 (lower is better) Translates to: KFKHSMTHLGDIRLELLTLDCDL*EERVAG Trigger: ACCTGCTACCCGCTCTTCCAACAGGTCGCAATCAAG...TGTTAGTAGTTCAAGTCGAATGTCACCCAAGTGTGTCATACTGTGTTTAAATTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR CAA 90 bp | GAAATTCATGATGCAAATCCCTGGCATAAGATGAATCCATCTTGTCCTCAAAGGATGTTTCGGCTGATGTaGTCCATCTTGATTGCGACC | + |
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Preference number: 5 (lower is better) Translates to: EIHDANPWHKMNPSCPQRMFRLM*SILIAT Trigger: GGTCGCAATCAAGATGGACAACATCAGCCGAAACAT...CCTTTGAGGACAAGATGGATTCATCTTATGCCAGGGATTTGCATCATGAATTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR CAA 90 bp | CTTAAGTTAATCACTGAGCCTGCTACCATTTGGCAAGTATGTTTCTTTTTCAGACAGGTGACCGAACAGTaGAAGGTTCGACTCCAAAGC | + |
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Preference number: 5 (lower is better) Translates to: LKLITEPATIWQVCFFFRQVTEQ*KVRLQS Trigger: GCTTTGGAGTCGAACCTTCAACTGTTCGGTCACCTG...TCTGAAAAAGAAACATACTTGCCAAATGGTAGCAGGCTCAGTGATTAACTTAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR CAA 90 bp | CTTAAGTTAATCACTGAGCCTGCTACCATTTGGCAAGTATGTTTCTTTTTCAGATCCTGCCACGTGCTGTaGAAAAACTCAGAGACCATG | + |
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Preference number: 5 (lower is better) Translates to: LKLITEPATIWQVCFFFRSCHVL*KNSETM Trigger: CATGGTCTCTGAGTTTTTCAACAGCACGTGGCAGGA...TCTGAAAAAGAAACATACTTGCCAAATGGTAGCAGGCTCAGTGATTAACTTAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR CAA 90 bp | CTTAAGTTAATCACTGAGCCTGCTACCATTTGGCAAGTATGTTTCTTTTTCAGAGTTCAGTTTCTGCATTaGACTGTACAGGAGGCTCAG | + |
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Preference number: 5 (lower is better) Translates to: LKLITEPATIWQVCFFFRVQFLH*TVQEAQ Trigger: CTGAGCCTCCTGTACAGTCAAATGCAGAAACTGAAC...TCTGAAAAAGAAACATACTTGCCAAATGGTAGCAGGCTCAGTGATTAACTTAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR CAA 90 bp | AAATTTAAACACAGTATGACACACTTGGGTGACATTCGACTTGAACTACTAACAAAACTGGTGCTCGACTaGAGACGTTTGGGTAGAATG | + |
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Preference number: 5 (lower is better) Translates to: KFKHSMTHLGDIRLELLTKLVLD*RRLGRM Trigger: CATTCTACCCAAACGTCTCAAGTCGAGCACCAGTTT...TGTTAGTAGTTCAAGTCGAATGTCACCCAAGTGTGTCATACTGTGTTTAAATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR CAA 90 bp | CTTAAGTTAATCACTGAGCCTGCTACCATTTGGCAAGTATGTTTCTTTTTCAGAAGTCCTCTGTGTTGTTaGACAAATCCTCACCATTGT | + |
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Preference number: 5 (lower is better) Translates to: LKLITEPATIWQVCFFFRSPLCC*TNPHHC Trigger: ACAATGGTGAGGATTTGTCAAACAACACAGAGGACT...TCTGAAAAAGAAACATACTTGCCAAATGGTAGCAGGCTCAGTGATTAACTTAAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR CAA 90 bp | AAATTTAAACACAGTATGACACACTTGGGTGACATTCGACTTGAACTACTAACAAAGCAGGCCAAAGTCTaGTTAAACAGACTGAGGAAG | + |
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Preference number: 5 (lower is better) Translates to: KFKHSMTHLGDIRLELLTKQAKV*LNRLRK Trigger: CTTCCTCAGTCTGTTTAACAAGACTTTGGCCTGCTT...TGTTAGTAGTTCAAGTCGAATGTCACCCAAGTGTGTCATACTGTGTTTAAATTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR CAA 90 bp | TTCCACCGGATTAACCAACAAAACCATCAACTTCTACATCTTGAGAAATACAACTCAGGTGGCATTTTCTaGAATGTTGGCAAAACTGGT | + |
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Preference number: 5 (lower is better) Translates to: FHRINQQNHQLLHLEKYNSGGIF*NVGKTG Trigger: ACCAGTTTTGCCAACATTCAAGAAAATGCCACCTGA...GTTGTATTTCTCAAGATGTAGAAGTTGATGGTTTTGTTGGTTAATCCGGTGGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS-3UTR CAA 90 bp | AAATTTAAACACAGTATGACACACTTGGGTGACATTCGACTTGAACTACTAACATTGGGTAGAATGAGTTaGCGTTTCTTTTGCTCTGAG | + |
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Preference number: 5 (lower is better) Translates to: KFKHSMTHLGDIRLELLTLGRMS*RFFCSE Trigger: CTCAGAGCAAAAGAAACGCAAACTCATTCTACCCAA...TGTTAGTAGTTCAAGTCGAATGTCACCCAAGTGTGTCATACTGTGTTTAAATTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS TCA 72 bp | ACAGCAGGTCCGCAAAGCCTGGGTGCCGACTGCTGGTaGAGGGGAGCGCGCACAGGGCGCACCTCCACCGCA | + |
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Preference number: 6 (lower is better) Translates to: TAGPQSLGADCW*RGARTGRTSTA Trigger: TGCGGTGGAGGTGCGCCCTGTGCGCGCTCCCCTTCACCAGCAGTCGGCACCCAGGCTTTGCGGACCTGCTGT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS GCA 72 bp | AGCTGCTGCTCCGACAGCAGGTCCGCAAAGCCTGGGTaGCGACTGCTGGTGAAGGGGAGCGCGCACAGGGCG | + |
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Preference number: 6 (lower is better) Translates to: SCCSDSRSAKPG*RLLVKGSAHRA Trigger: CGCCCTGTGCGCGCTCCCCTTCACCAGCAGTCGGCACCCAGGCTTTGCGGACCTGCTGTCGGAGCAGCAGCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS GCA 72 bp | GGTAGCAGGTCTGGCAGAGGCGCACGGGCCGAGCGCTaGGCACCATACAGGCGGTCAGCTCGGCGCTGCTAT | + |
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Preference number: 6 (lower is better) Translates to: GSRSGRGARAER*APYRRSARRCY Trigger: ATAGCAGCGCCGAGCTGACCGCCTGTATGGTGCGCAGCGCTCGGCCCGTGCGCCTCTGCCAGACCTGCTACC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS CAA 90 bp | GGCCGAGCGCTGCGCACCATACAGGCGGTCAGCTCGGCGCTGCTATaGGCGAAGTCCATCAGCAGCTCCCGGCACTCAGGCTCCAGATCC | + |
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Preference number: 6 (lower is better) Translates to: GRALRTIQAVSSALL*AKSISSSRHSGSRS Trigger: GGATCTGGAGCCTGAGTGCCGGGAGCTGCTGATGGACTTCGCCAATAGCAGCGCCGAGCTGACCGCCTGTATGGTGCGCAGCGCTCGGCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS CCA 72 bp | CAACAGCTGCTGCTCCGACAGCAGGTCCGCAAAGCCTaGGTGCCGACTGCTGGTGAAGGGGAGCGCGCACAG | + |
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Preference number: 6 (lower is better) Translates to: QQLLLRQQVRKA*VPTAGEGERAQ Trigger: CTGTGCGCGCTCCCCTTCACCAGCAGTCGGCACCCAGGCTTTGCGGACCTGCTGTCGGAGCAGCAGCTGTTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS CAA 72 bp | CTGCGCACCATACAGGCGGTCAGCTCGGCGCTGCTATaGGCGAAGTCCATCAGCAGCTCCCGGCACTCAGGC | + |
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Preference number: 6 (lower is better) Translates to: LRTIQAVSSALL*AKSISSSRHSG Trigger: GCCTGAGTGCCGGGAGCTGCTGATGGACTTCGCCAATAGCAGCGCCGAGCTGACCGCCTGTATGGTGCGCAG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS CCA 72 bp | TGCGCACCATACAGGCGGTCAGCTCGGCGCTGCTATTaGCGAAGTCCATCAGCAGCTCCCGGCACTCAGGCT | + |
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Preference number: 6 (lower is better) Translates to: CAPYRRSARRCY*RSPSAAPGTQA Trigger: AGCCTGAGTGCCGGGAGCTGCTGATGGACTTCGCCAATAGCAGCGCCGAGCTGACCGCCTGTATGGTGCGCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS GCA 72 bp | GGAGGTAGCAGTGACAGCGGCCCTAGACCTCCGCCCTaGAGCAAAGACAGGGTCAAGTCCTGCACCTCCAAC | + |
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Preference number: 6 (lower is better) Translates to: GGSSDSGPRPPP*SKDRVKSCTSN Trigger: GTTGGAGGTGCAGGACTTGACCCTGTCTTTGCTGCAGGGCGGAGGTCTAGGGCCGCTGTCACTGCTACCTCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS CAA 90 bp | ATTCCCGATGTTTCGGCTGATGTTGTCCATCTTGATTGCGACCTGTaGGAAGAGCGGGTAGCAGGTCTGGCAGAGGCGCACGGGCCGAGC | + |
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Preference number: 6 (lower is better) Translates to: IPDVSADVVHLDCDL*EERVAGLAEAHGPS Trigger: GCTCGGCCCGTGCGCCTCTGCCAGACCTGCTACCCGCTCTTCCAACAGGTCGCAATCAAGATGGACAACATCAGCCGAAACATCGGGAAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS GCA 72 bp | AAACTCAGAGACCATGAGAACTATCTGCATTCTGTCTaGCGTCAGGAGACTTCCGCCACAGCGCGGGCCCTC | + |
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Preference number: 6 (lower is better) Translates to: KLRDHENYLHSV*RQETSATARAL Trigger: GAGGGCCCGCGCTGTGGCGGAAGTCTCCTGACGGCAGACAGAATGCAGATAGTTCTCATGGTCTCTGAGTTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS CAA 72 bp | GTTTCGGCTGATGTTGTCCATCTTGATTGCGACCTGTaGGAAGAGCGGGTAGCAGGTCTGGCAGAGGCGCAC | + |
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Preference number: 6 (lower is better) Translates to: VSADVVHLDCDL*EERVAGLAEAH Trigger: GTGCGCCTCTGCCAGACCTGCTACCCGCTCTTCCAACAGGTCGCAATCAAGATGGACAACATCAGCCGAAAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS CAA 72 bp | GGGCCCTCGGAGGTATTCCCGATGTTTCGGCTGATGTaGTCCATCTTGATTGCGACCTGTTGGAAGAGCGGG | + |
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Preference number: 6 (lower is better) Translates to: GPSEVFPMFRLM*SILIATCWKSG Trigger: CCCGCTCTTCCAACAGGTCGCAATCAAGATGGACAACATCAGCCGAAACATCGGGAATACCTCCGAGGGCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS CAA 72 bp | ACCACGGACACCGTGTCGCTGCAGGTGACCGAACAGTaGAAGGTTCGACTCCAAAGCTTCCGAGTAATGTTC | + |
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Preference number: 6 (lower is better) Translates to: TTDTVSLQVTEQ*KVRLQSFRVMF Trigger: GAACATTACTCGGAAGCTTTGGAGTCGAACCTTCAACTGTTCGGTCACCTGCAGCGACACGGTGTCCGTGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040718.6 ENSMUST00000105497.8 ENSMUST00000144806.8 |
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| CDS CAA 90 bp | GACACAGCAACCACGGACACCGTGTCGCTGCAGGTGACCGAACAGTaGAAGGTTCGACTCCAAAGCTTCCGAGTAATGTTCATTGCATCC | + |
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Preference number: 6 (lower is better) Translates to: DTATTDTVSLQVTEQ*KVRLQSFRVMFIAS Trigger: GGATGCAATGAACATTACTCGGAAGCTTTGGAGTCGAACCTTCAACTGTTCGGTCACCTGCAGCGACACGGTGTCCGTGGTTGCTGTGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040718.6 ENSMUST00000105497.8 ENSMUST00000144806.8 |
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| CDS GCA 72 bp | ATTCCCGATGTTTCGGCTGATGTTGTCCATCTTGATTaGGACCTGTTGGAAGAGCGGGTAGCAGGTCTGGCA | + |
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Preference number: 6 (lower is better) Translates to: IPDVSADVVHLD*DLLEERVAGLA Trigger: TGCCAGACCTGCTACCCGCTCTTCCAACAGGTCGCAATCAAGATGGACAACATCAGCCGAAACATCGGGAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040718.6 |
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| CDS CAA 90 bp | AACAGACTGAGGAAGTCCTCTGTGTTGTTTGACAAATCCTCACCATaGTTTGTTAGGCAATTTGCGCAGTTCGCCTCCTGCCACGTGCTG | + |
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Preference number: 6 (lower is better) Translates to: NRLRKSSVLFDKSSP*FVRQFAQFASCHVL Trigger: CAGCACGTGGCAGGAGGCGAACTGCGCAAATTGCCTAACAAACAATGGTGAGGATTTGTCAAACAACACAGAGGACTTCCTCAGTCTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040718.6 ENSMUST00000105497.8 ENSMUST00000144806.8 |
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| CDS CAA 72 bp | AGTCCTCTGTGTTGTTTGACAAATCCTCACCATTGTTaGTTAGGCAATTTGCGCAGTTCGCCTCCTGCCACG | + |
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Preference number: 6 (lower is better) Translates to: SPLCCLTNPHHC*LGNLRSSPPAT Trigger: CGTGGCAGGAGGCGAACTGCGCAAATTGCCTAACAAACAATGGTGAGGATTTGTCAAACAACACAGAGGACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040718.6 ENSMUST00000105497.8 ENSMUST00000144806.8 |
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| CDS CAA 90 bp | CTGTATGTGTGCCCCTGCAGGTTATGCTCAAAGCAGGCCAAAGTCTaGTTAAACAGACTGAGGAAGTCCTCTGTGTTGTTTGACAAATCC | + |
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Preference number: 6 (lower is better) Translates to: LYVCPCRLCSKQAKV*LNRLRKSSVLFDKS Trigger: GGATTTGTCAAACAACACAGAGGACTTCCTCAGTCTGTTTAACAAGACTTTGGCCTGCTTTGAGCATAACCTGCAGGGGCACACATACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040718.6 ENSMUST00000105497.8 ENSMUST00000144806.8 |
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| CDS CAA 72 bp | AGGAAGTCCTCTGTGTTGTTTGACAAATCCTCACCATaGTTTGTTAGGCAATTTGCGCAGTTCGCCTCCTGC | + |
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Preference number: 6 (lower is better) Translates to: RKSSVLFDKSSP*FVRQFAQFASC Trigger: GCAGGAGGCGAACTGCGCAAATTGCCTAACAAACAATGGTGAGGATTTGTCAAACAACACAGAGGACTTCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040718.6 ENSMUST00000105497.8 ENSMUST00000144806.8 |
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| CDS CAA 72 bp | TGCCCCTGCAGGTTATGCTCAAAGCAGGCCAAAGTCTaGTTAAACAGACTGAGGAAGTCCTCTGTGTTGTTT | + |
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Preference number: 6 (lower is better) Translates to: CPCRLCSKQAKV*LNRLRKSSVLF Trigger: AAACAACACAGAGGACTTCCTCAGTCTGTTTAACAAGACTTTGGCCTGCTTTGAGCATAACCTGCAGGGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040718.6 ENSMUST00000105497.8 ENSMUST00000144806.8 |
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| CDS CAA 90 bp | AAGCAGGCCAAAGTCTTGTTAAACAGACTGAGGAAGTCCTCTGTGTaGTTTGACAAATCCTCACCATTGTTTGTTAGGCAATTTGCGCAG | + |
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Preference number: 6 (lower is better) Translates to: KQAKVLLNRLRKSSV*FDKSSPLFVRQFAQ Trigger: CTGCGCAAATTGCCTAACAAACAATGGTGAGGATTTGTCAAACAACACAGAGGACTTCCTCAGTCTGTTTAACAAGACTTTGGCCTGCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040718.6 ENSMUST00000105497.8 ENSMUST00000144806.8 |
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| CDS GCA 72 bp | CTGCATTTGACTGTACAGGAGGCTCAGGTTTTTATATaGCTCTTTACAGTTTCTGCACACTTCGGAGTAATT | + |
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Preference number: 6 (lower is better) Translates to: LHLTVQEAQVFI*LFTVSAHFGVI Trigger: AATTACTCCGAAGTGTGCAGAAACTGTAAAGAGGCATATAAAAACCTGAGCCTCCTGTACAGTCAAATGCAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000040718.6 ENSMUST00000105497.8 ENSMUST00000144806.8 |
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| CDS CAA 72 bp | AAAGTCTTGTTAAACAGACTGAGGAAGTCCTCTGTGTaGTTTGACAAATCCTCACCATTGTTTGTTAGGCAA | + |
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Preference number: 6 (lower is better) Translates to: KVLLNRLRKSSV*FDKSSPLFVRQ Trigger: TTGCCTAACAAACAATGGTGAGGATTTGTCAAACAACACAGAGGACTTCCTCAGTCTGTTTAACAAGACTTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040718.6 ENSMUST00000105497.8 ENSMUST00000144806.8 |
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