Pregenerated sensors for OSTC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041084Ensembl transcript IDs: ENSMUST00000043937.9
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TGCAGAGTAGCACACACACCATTTAAAGCACCACTGCAGGAACTGGCCAATCGTGTCCTAGCTCTGCTGTaGTTGCTAGGGTGTCGCTCA | + |
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Preference number: 2 (lower is better) Translates to: CRVAHTPFKAPLQELANRVLALL*LLGCRS Trigger: TGAGCGACACCCTAGCAAGCACAGCAGAGCTAGGAC...ACGATTGGCCAGTTCCTGCAGTGGTGCTTTAAATGGTGTGTGTGCTACTCTGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043937.9 |
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| 3UTR-3UTR GCA 90 bp | ACTGGGGTAGGTCATCAAGGGAAATACTGTAATGAACTTGTCTCTGATCCCGTGCTTTCTTTTCCACATTaGAGGAGGGAGTGGGTCAGC | + |
|
Preference number: 2 (lower is better) Translates to: TGVGHQGKYCNELVSDPVLSFPH*RREWVS Trigger: GCTGACCCACTCCCTCCTGCAATGTGGAAAAGAAAG...CACGGGATCAGAGACAAGTTCATTACAGTATTTCCCTTGATGACCTACCCCAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043937.9 |
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| 3UTR-3UTR GCA 90 bp | AACTGGCCAATCGTCCAAATATCTCAGCTCTCACAATATACTTCTCAATTTGCGGTGCAGCGTTTACACTaGTCTTCTTTCTTTTCCACA | + |
|
Preference number: 2 (lower is better) Translates to: NWPIVQISQLSQYTSQFAVQRLH*SSFFST Trigger: TGTGGAAAAGAAAGAAGAGCAGTGTAAACGCTGCAC...CGCAAATTGAGAAGTATATTGTGAGAGCTGAGATATTTGGACGATTGGCCAGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043937.9 |
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| 3UTR GCA 72 bp | TGCTTGCTAGGGTGTCGCTCAGTGCAGCGTTTACACTaGTCTTCTTTCTTTTCCACATTGCAGGAGGGAGTG | + |
|
Preference number: 3 (lower is better) Translates to: CLLGCRSVQRLH*SSFFSTLQEGV Trigger: CACTCCCTCCTGCAATGTGGAAAAGAAAGAAGAGCAGTGTAAACGCTGCACTGAGCGACACCCTAGCAAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043937.9 |
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| 3UTR-3UTR CAA 90 bp | AACTGGCCAATCGTCCAAATATCTCAGCTCTCACAATATACTTCTCAATTTGCGTCTTTCTTTTCCACATaGCAGGAGGGAGTGGGTCAG | + |
|
Preference number: 3 (lower is better) Translates to: NWPIVQISQLSQYTSQFASFFST*QEGVGQ Trigger: CTGACCCACTCCCTCCTGCAATGTGGAAAAGAAAGA...CGCAAATTGAGAAGTATATTGTGAGAGCTGAGATATTTGGACGATTGGCCAGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043937.9 |
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| CDS-3UTR GCA 90 bp | TGCAGAGTAGCACACACACCATTTAAAGCACCACTGCAGGAACTGGCCAATCGTATAGCCGACGGCATGTaGACCCAGGGCGGTTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: CRVAHTPFKAPLQELANRIADGM*TQGGFF Trigger: GAAGAAACCGCCCTGGGTGCACATGCCGTCGGCTAT...ACGATTGGCCAGTTCCTGCAGTGGTGCTTTAAATGGTGTGTGTGCTACTCTGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043937.9 |
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