Pregenerated sensors for OST4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038803Ensembl transcript IDs: ENSMUST00000132253.5
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTCCCGTCTTCCAGCTGCTGGTACCATGTGACAACCATAGCTCCTTaGAATGTCGGCCACACTGTCCAAGGCCTTGCAGAACATCACCTT | + |
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Preference number: 1 (lower is better) Translates to: VPSSSCWYHVTTIAP*NVGHTVQGLAEHHL Trigger: AAGGTGATGTTCTGCAAGGCCTTGGACAGTGTGGCCGACATTCCAAGGAGCTATGGTTGTCACATGGTACCAGCAGCTGGAAGACGGGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132253.5 |
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| 3UTR CAA 90 bp | AGTCCCGTCTTCCAGCTGCTGGTACCATGTGACAACCATAGCTCCTaGGAATGTCGGCCACACTGTCCAAGGCCTTGCAGAACATCACCT | + |
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Preference number: 2 (lower is better) Translates to: SPVFQLLVPCDNHSS*ECRPHCPRPCRTSP Trigger: AGGTGATGTTCTGCAAGGCCTTGGACAGTGTGGCCGACATTCCAAGGAGCTATGGTTGTCACATGGTACCAGCAGCTGGAAGACGGGACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132253.5 |
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| 3UTR-3UTR CCA 90 bp | TCCTGTACTCTATCTGACTCCCCATCCCGGATTTGTTACAGCAGGGGGCTCTTGCCTCAGACTATGTCCTaGAACCCTGGGGCGGAGAAA | + |
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Preference number: 2 (lower is better) Translates to: SCTLSDSPSRICYSRGLLPQTMS*NPGAEK Trigger: TTTCTCCGCCCCAGGGTTCCAGGACATAGTCTGAGG...CAAGAGCCCCCTGCTGTAACAAATCCGGGATGGGGAGTCAGATAGAGTACAGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000132253.5 |
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| 3UTR-3UTR TCA 90 bp | GTTAGTCCCGTCTTCCAGCTGCTGGTACCATGTGACAACCATAGCTCCTTGGAAGTAGGAGAGATGAAGTaGAGTGTGAAGGCCCTCACA | + |
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Preference number: 2 (lower is better) Translates to: VSPVFQLLVPCDNHSSLEVGEMK*SVKALT Trigger: TGTGAGGGCCTTCACACTTCACTTCATCTCTCCTAC...TTCCAAGGAGCTATGGTTGTCACATGGTACCAGCAGCTGGAAGACGGGACTAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132253.5 |
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| 3UTR-3UTR GCA 90 bp | GTGAGGTTTGTTTTGTCCCTAAATCACCACCACTCACTATTTCTCCCAGGGTCTAACAAAACAGGGACCTaGTCCCTCCCACTCCCCCAC | + |
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Preference number: 2 (lower is better) Translates to: VRFVLSLNHHHSLFLPGSNKTGT*SLPLPH Trigger: GTGGGGGAGTGGGAGGGAGCAGGTCCCTGTTTTGTT...AGACCCTGGGAGAAATAGTGAGTGGTGGTGATTTAGGGACAAAACAAACCTCAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000132253.5 |
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| 3UTR-3UTR TCA 90 bp | GTTAGTCCCGTCTTCCAGCTGCTGGTACCATGTGACAACCATAGCTCCTTGGAATTGCTTTGTATGCTGTaGTGGGTAGGAGAGATGAAG | + |
|
Preference number: 2 (lower is better) Translates to: VSPVFQLLVPCDNHSSLELLCML*WVGEMK Trigger: CTTCATCTCTCCTACCCATCACAGCATACAAAGCAA...TTCCAAGGAGCTATGGTTGTCACATGGTACCAGCAGCTGGAAGACGGGACTAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132253.5 |
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| 3UTR-3UTR TCA 90 bp | GTGAGGTTTGTTTTGTCCCTAAATCACCACCACTCACTATTTCTCCCAGGGTCTGGTGAGGGAACACAGTaGAATGATACGTTAGTCCCG | + |
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Preference number: 2 (lower is better) Translates to: VRFVLSLNHHHSLFLPGSGEGTQ*NDTLVP Trigger: CGGGACTAACGTATCATTTCACTGTGTTCCCTCACC...AGACCCTGGGAGAAATAGTGAGTGGTGGTGATTTAGGGACAAAACAAACCTCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000132253.5 |
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| 3UTR-3UTR CAA 90 bp | GTTAGTCCCGTCTTCCAGCTGCTGGTACCATGTGACAACCATAGCTCCTTGGAACCAGGTGTAGTTGCTTaGTATGCTGTGATGGGTAGG | + |
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Preference number: 3 (lower is better) Translates to: VSPVFQLLVPCDNHSSLEPGVVA*YAVMGR Trigger: CCTACCCATCACAGCATACAAAGCAACTACACCTGG...TTCCAAGGAGCTATGGTTGTCACATGGTACCAGCAGCTGGAAGACGGGACTAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132253.5 |
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| 3UTR-3UTR CAA 90 bp | CACTCACTATTTCTCCCAGGGTCTGATAATGCCTTTACCTCCATGTCCAGGATGACACTGTCCAAGGCCTaGCAGAACATCACCTTAAGA | + |
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Preference number: 3 (lower is better) Translates to: HSLFLPGSDNAFTSMSRMTLSKA*QNITLR Trigger: TCTTAAGGTGATGTTCTGCAAGGCCTTGGACAGTGT...CATCCTGGACATGGAGGTAAAGGCATTATCAGACCCTGGGAGAAATAGTGAGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132253.5 |
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| CDS-3UTR GCA 90 bp | ACCAATGTGAGGTTTGTTTTGTCCCTAAATCACCACCACTCACTATTTCTCCCACTTGGGGTTGTTTACTaGCACGTAGTGATAGAGGAC | + |
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Preference number: 4 (lower is better) Translates to: TNVRFVLSLNHHHSLFLPLGVVY*HVVIED Trigger: GTCCTCTATCACTACGTGGCAGTAAACAACCCCAAG...TGGGAGAAATAGTGAGTGGTGGTGATTTAGGGACAAAACAAACCTCACATTGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000132253.5 |
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