Pregenerated sensors for OSCAR (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054594Ensembl transcript IDs: ENSMUST00000039507.15, ENSMUST00000108645.8, ENSMUST00000148012.2
Found 102 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAGATGGCTCAGTGGGTAAAGTTGTTGTGGCTAAGCCTGGCAGCCTaGGTTCAAACCCTAGGACCTACAGGATGGACAGAGAAAATCAAC | + |
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Preference number: 1 (lower is better) Translates to: QMAQWVKLLWLSLAA*VQTLGPTGWTEKIN Trigger: GTTGATTTTCTCTGTCCATCCTGTAGGTCCTAGGGTTTGAACTCAGGCTGCCAGGCTTAGCCACAACAACTTTACCCACTGAGCCATCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| 3UTR CCA 90 bp | ACACCCATCTGTAACTCTAATTCCAAGAGATCAGATGCCTTCTTCTaGCTTCCTTGGGGAGCGAGGCCTACATGCATACAGGCAAAGCAT | + |
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Preference number: 1 (lower is better) Translates to: TPICNSNSKRSDAFF*LPWGARPTCIQAKH Trigger: ATGCTTTGCCTGTATGCATGTAGGCCTCGCTCCCCAAGGAAGCCAGAAGAAGGCATCTGATCTCTTGGAATTAGAGTTACAGATGGGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| 3UTR CCA 90 bp | TGTAACTCTAATTCCAAGAGATCAGATGCCTTCTTCTGGCTTCCTTaGGGAGCGAGGCCTACATGCATACAGGCAAAGCATTCATATATA | + |
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Preference number: 1 (lower is better) Translates to: CNSNSKRSDAFFWLP*GARPTCIQAKHSYI Trigger: TATATATGAATGCTTTGCCTGTATGCATGTAGGCCTCGCTCCCCAAGGAAGCCAGAAGAAGGCATCTGATCTCTTGGAATTAGAGTTACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| 3UTR-3UTR TCA 90 bp | CAGCCAGATGGCTCAGTGGGTAAAGTTGTTGTGGCTAAGCCTGGCAGCCTGAGTAGCCTGACAGTGTGGTaGAGAATGAGTATCTGGTGG | + |
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Preference number: 2 (lower is better) Translates to: QPDGSVGKVVVAKPGSLSSLTVW*RMSIWW Trigger: CCACCAGATACTCATTCTTCACCACACTGTCAGGCT...ACTCAGGCTGCCAGGCTTAGCCACAACAACTTTACCCACTGAGCCATCTGGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| 3UTR-3UTR CCA 90 bp | GAGATCAGATGCCTTCTTCTGGCTTCCTTGGGGAGCGAGGCCTACATGCATACAAAAAGAAAGGAGAGGTaGGGAGCCGGAAATAAGGCA | + |
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Preference number: 2 (lower is better) Translates to: EIRCLLLASLGSEAYMHTKRKER*GAGNKA Trigger: TGCCTTATTTCCGGCTCCCCACCTCTCCTTTCTTTT...TGTATGCATGTAGGCCTCGCTCCCCAAGGAAGCCAGAAGAAGGCATCTGATCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| 3UTR-3UTR CCA 90 bp | GATCAGATGCCTTCTTCTGGCTTCCTTGGGGAGCGAGGCCTACATGCATACAGGCTAGGACCTACAGGATaGACAGAGAAAATCAACTCC | + |
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Preference number: 2 (lower is better) Translates to: DQMPSSGFLGERGLHAYRLGPTG*TEKINS Trigger: GGAGTTGATTTTCTCTGTCCATCCTGTAGGTCCTAG...CCTGTATGCATGTAGGCCTCGCTCCCCAAGGAAGCCAGAAGAAGGCATCTGATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| 3UTR-3UTR CCA 90 bp | AGATGCCTTCTTCTGGCTTCCTTGGGGAGCGAGGCCTACATGCATACAGGCAAAAGCCAGATGGCTCAGTaGGTAAAGTTGTTGTGGCTA | + |
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Preference number: 2 (lower is better) Translates to: RCLLLASLGSEAYMHTGKSQMAQ*VKLLWL Trigger: TAGCCACAACAACTTTACCCACTGAGCCATCTGGCT...TTTGCCTGTATGCATGTAGGCCTCGCTCCCCAAGGAAGCCAGAAGAAGGCATCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| 3UTR-3UTR CCA 90 bp | GAAAGGAGAGGTGGGGAGCCGGAAATAAGGCACAGGAAGGAAATAGAGGTTTTCGTATCTGGTGGAGTCTaGAGGCCTAGAGTGTTTCAG | + |
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Preference number: 2 (lower is better) Translates to: ERRGGEPEIRHRKEIEVFVSGGV*RPRVFQ Trigger: CTGAAACACTCTAGGCCTCCAGACTCCACCAGATAC...GAAAACCTCTATTTCCTTCCTGTGCCTTATTTCCGGCTCCCCACCTCTCCTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| 3UTR-3UTR TCA 90 bp | AATTACTTAGGAGCCAGCCAGATGGCTCAGTGGGTAAAGTTGTTGTGGCTAAGCAGCCTGACAGTGTGGTaGAGAATGAGTATCTGGTGG | + |
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Preference number: 2 (lower is better) Translates to: NYLGASQMAQWVKLLWLSSLTVW*RMSIWW Trigger: CCACCAGATACTCATTCTTCACCACACTGTCAGGCT...GCTTAGCCACAACAACTTTACCCACTGAGCCATCTGGCTGGCTCCTAAGTAATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| 3UTR-3UTR CCA 90 bp | AATTACTTAGGAGCCAGCCAGATGGCTCAGTGGGTAAAGTTGTTGTGGCTAAGCGTATCTGGTGGAGTCTaGAGGCCTAGAGTGTTTCAG | + |
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Preference number: 2 (lower is better) Translates to: NYLGASQMAQWVKLLWLSVSGGV*RPRVFQ Trigger: CTGAAACACTCTAGGCCTCCAGACTCCACCAGATAC...GCTTAGCCACAACAACTTTACCCACTGAGCCATCTGGCTGGCTCCTAAGTAATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| 3UTR-3UTR TCA 90 bp | GCACAGGAAGGAAATAGAGGTTTTCAAGGGAGGATAAAGTCACTAACATTAGCTCAGTGTGGTGAAGAATaGGTATCTGGTGGAGTCTGG | + |
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Preference number: 2 (lower is better) Translates to: AQEGNRGFQGRIKSLTLAQCGEE*VSGGVW Trigger: CCAGACTCCACCAGATACTCATTCTTCACCACACTG...AGCTAATGTTAGTGACTTTATCCTCCCTTGAAAACCTCTATTTCCTTCCTGTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| 3UTR-3UTR CCA 90 bp | AATAAGGCACAGGAAGGAAATAGAGGTTTTCAAGGGAGGATAAAGTCACTAACAGTATCTGGTGGAGTCTaGAGGCCTAGAGTGTTTCAG | + |
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Preference number: 2 (lower is better) Translates to: NKAQEGNRGFQGRIKSLTVSGGV*RPRVFQ Trigger: CTGAAACACTCTAGGCCTCCAGACTCCACCAGATAC...TGTTAGTGACTTTATCCTCCCTTGAAAACCTCTATTTCCTTCCTGTGCCTTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| 3UTR CCA 72 bp | GGTGGAGTCTGGAGGCCTAGAGTGTTTCAGAGGGGCTaGTCACCAAGGATCCCAGCTTCTCTGTCCATCTCC | + |
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Preference number: 3 (lower is better) Translates to: GGVWRPRVFQRG*SPRIPASLSIS Trigger: GGAGATGGACAGAGAAGCTGGGATCCTTGGTGACCAGCCCCTCTGAAACACTCTAGGCCTCCAGACTCCACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| 3UTR TCA 72 bp | CAGTGGGTAAAGTTGTTGTGGCTAAGCCTGGCAGCCTaGGTTCAAACCCTAGGACCTACAGGATGGACAGAG | + |
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Preference number: 3 (lower is better) Translates to: QWVKLLWLSLAA*VQTLGPTGWTE Trigger: CTCTGTCCATCCTGTAGGTCCTAGGGTTTGAACTCAGGCTGCCAGGCTTAGCCACAACAACTTTACCCACTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| 3UTR CCA 72 bp | AATTCCAAGAGATCAGATGCCTTCTTCTGGCTTCCTTaGGGAGCGAGGCCTACATGCATACAGGCAAAGCAT | + |
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Preference number: 3 (lower is better) Translates to: NSKRSDAFFWLP*GARPTCIQAKH Trigger: ATGCTTTGCCTGTATGCATGTAGGCCTCGCTCCCCAAGGAAGCCAGAAGAAGGCATCTGATCTCTTGGAATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| 3UTR-3UTR CAA 90 bp | AATTACTTAGGAGCCAGCCAGATGGCTCAGTGGGTAAAGTTGTTGTGGCTAAGCTGGAAGTTGTCTTTTTaGCCTCTACACACGGCTGAG | + |
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Preference number: 3 (lower is better) Translates to: NYLGASQMAQWVKLLWLSWKLSF*PLHTAE Trigger: CTCAGCCGTGTGTAGAGGCAAAAAAGACAACTTCCA...GCTTAGCCACAACAACTTTACCCACTGAGCCATCTGGCTGGCTCCTAAGTAATT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| 3UTR TCA 72 bp | TTAGAAATTTTTGCTGGGTGTGGTAGAATGAACCTATaGTCCCAACGCGGCCAGAAAGAAAAAGAAAGGAGA | + |
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Preference number: 3 (lower is better) Translates to: LEIFAGCGRMNL*SQRGQKEKERR Trigger: TCTCCTTTCTTTTTCTTTCTGGCCGCGTTGGGATCATAGGTTCATTCTACCACACCCAGCAAAAATTTCTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR TCA 90 bp | AGAGGGGCTGGTCACCAAGGATCCCAGCTTCTCTGTCCATCTCCAGGCAGTCTCACAACTGCAGCAGGATaGGCTCCCAGCCATGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: RGAGHQGSQLLCPSPGSLTTAAG*APSHGW Trigger: CCAGCCATGGCTGGGAGCTCATCCTGCTGCAGTTGT...GAGACTGCCTGGAGATGGACAGAGAAGCTGGGATCCTTGGTGACCAGCCCCTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR CCA 90 bp | GATCAGATGCCTTCTTCTGGCTTCCTTGGGGAGCGAGGCCTACATGCATACAGGGCTCCCAGCCATGGCTaGGGGTATGAGGCTAGGGGC | + |
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Preference number: 4 (lower is better) Translates to: DQMPSSGFLGERGLHAYRAPSHG*GYEARG Trigger: GCCCCTAGCCTCATACCCCCAGCCATGGCTGGGAGC...CCTGTATGCATGTAGGCCTCGCTCCCCAAGGAAGCCAGAAGAAGGCATCTGATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR GCA 90 bp | CTAGAGTGTTTCAGAGGGGCTGGTCACCAAGGATCCCAGCTTCTCTGTCCATCTAACTCATGCCCGGTATaGGGCCTGCACAGCGCAGGC | + |
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Preference number: 4 (lower is better) Translates to: LECFRGAGHQGSQLLCPSNSCPV*GLHSAG Trigger: GCCTGCGCTGTGCAGGCCGCATACCGGGCATGAGTT...AGATGGACAGAGAAGCTGGGATCCTTGGTGACCAGCCCCTCTGAAACACTCTAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR TCA 90 bp | GAGATCAGATGCCTTCTTCTGGCTTCCTTGGGGAGCGAGGCCTACATGCATACAACAACTGCAGCAGGATaGGCTCCCAGCCATGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: EIRCLLLASLGSEAYMHTTTAAG*APSHGW Trigger: CCAGCCATGGCTGGGAGCTCATCCTGCTGCAGTTGT...TGTATGCATGTAGGCCTCGCTCCCCAAGGAAGCCAGAAGAAGGCATCTGATCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR TCA 90 bp | GTTGTTGTGGCTAAGCCTGGCAGCCTGAGTTCAAACCCTAGGACCTACAGGATGAACCGCCAGGCAGATTaGGGTGCGCGGCAAGTCAAG | + |
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Preference number: 4 (lower is better) Translates to: VVVAKPGSLSSNPRTYRMNRQAD*GARQVK Trigger: CTTGACTTGCCGCGCACCTCAATCTGCCTGGCGGTT...CATCCTGTAGGTCCTAGGGTTTGAACTCAGGCTGCCAGGCTTAGCCACAACAAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR GCA 90 bp | GATCAGATGCCTTCTTCTGGCTTCCTTGGGGAGCGAGGCCTACATGCATACAGGCCCAGGAGTCACAACTaGAGCAGGATGAGCTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: DQMPSSGFLGERGLHAYRPRSHN*SRMSSQ Trigger: CTGGGAGCTCATCCTGCTGCAGTTGTGACTCCTGGG...CCTGTATGCATGTAGGCCTCGCTCCCCAAGGAAGCCAGAAGAAGGCATCTGATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR GCA 90 bp | TCAGTGGGTAAAGTTGTTGTGGCTAAGCCTGGCAGCCTGAGTTCAAACCCTAGGAACTCATGCCCGGTATaGGGCCTGCACAGCGCAGGC | + |
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Preference number: 4 (lower is better) Translates to: SVGKVVVAKPGSLSSNPRNSCPV*GLHSAG Trigger: GCCTGCGCTGTGCAGGCCGCATACCGGGCATGAGTT...CCTAGGGTTTGAACTCAGGCTGCCAGGCTTAGCCACAACAACTTTACCCACTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR CCA 90 bp | GAAAGGAGAGGTGGGGAGCCGGAAATAAGGCACAGGAAGGAAATAGAGGTTTTCGCTCCCAGCCATGGCTaGGGGTATGAGGCTAGGGGC | + |
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Preference number: 4 (lower is better) Translates to: ERRGGEPEIRHRKEIEVFAPSHG*GYEARG Trigger: GCCCCTAGCCTCATACCCCCAGCCATGGCTGGGAGC...GAAAACCTCTATTTCCTTCCTGTGCCTTATTTCCGGCTCCCCACCTCTCCTTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR TCA 90 bp | CTAGAGTGTTTCAGAGGGGCTGGTCACCAAGGATCCCAGCTTCTCTGTCCATCTAGAACATTACTGGGCTaGGACCAGACACCTGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: LECFRGAGHQGSQLLCPSRTLLG*DQTPGP Trigger: GGGGCCAGGTGTCTGGTCTCAGCCCAGTAATGTTCT...AGATGGACAGAGAAGCTGGGATCCTTGGTGACCAGCCCCTCTGAAACACTCTAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR TCA 90 bp | GAGATCAGATGCCTTCTTCTGGCTTCCTTGGGGAGCGAGGCCTACATGCATACAAGAACATTACTGGGCTaGGACCAGACACCTGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: EIRCLLLASLGSEAYMHTRTLLG*DQTPGP Trigger: GGGGCCAGGTGTCTGGTCTCAGCCCAGTAATGTTCT...TGTATGCATGTAGGCCTCGCTCCCCAAGGAAGCCAGAAGAAGGCATCTGATCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR TCA 90 bp | GATCAGATGCCTTCTTCTGGCTTCCTTGGGGAGCGAGGCCTACATGCATACAGGCCAGCCCCAAACGGATaGGGTTTCCCTGGGTATAGT | + |
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Preference number: 4 (lower is better) Translates to: DQMPSSGFLGERGLHAYRPAPNG*GFPGYS Trigger: ACTATACCCAGGGAAACCTCATCCGTTTGGGGCTGG...CCTGTATGCATGTAGGCCTCGCTCCCCAAGGAAGCCAGAAGAAGGCATCTGATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR GCA 90 bp | GAAAGGAGAGGTGGGGAGCCGGAAATAAGGCACAGGAAGGAAATAGAGGTTTTCAACTCATGCCCGGTATaGGGCCTGCACAGCGCAGGC | + |
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Preference number: 4 (lower is better) Translates to: ERRGGEPEIRHRKEIEVFNSCPV*GLHSAG Trigger: GCCTGCGCTGTGCAGGCCGCATACCGGGCATGAGTT...GAAAACCTCTATTTCCTTCCTGTGCCTTATTTCCGGCTCCCCACCTCTCCTTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR CCA 90 bp | CAGCCAGATGGCTCAGTGGGTAAAGTTGTTGTGGCTAAGCCTGGCAGCCTGAGTCTGATGACCAGTGGCTaGCTGCGCTGTGATAGCACA | + |
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Preference number: 4 (lower is better) Translates to: QPDGSVGKVVVAKPGSLSLMTSG*LRCDST Trigger: TGTGCTATCACAGCGCAGCCAGCCACTGGTCATCAG...ACTCAGGCTGCCAGGCTTAGCCACAACAACTTTACCCACTGAGCCATCTGGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR CCA 90 bp | GAGATCAGATGCCTTCTTCTGGCTTCCTTGGGGAGCGAGGCCTACATGCATACACCACCAGTGATGGTCTaGGGAGCTGATCCGTTACCA | + |
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Preference number: 4 (lower is better) Translates to: EIRCLLLASLGSEAYMHTPPVMV*GADPLP Trigger: TGGTAACGGATCAGCTCCCCAGACCATCACTGGTGG...TGTATGCATGTAGGCCTCGCTCCCCAAGGAAGCCAGAAGAAGGCATCTGATCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR GCA 90 bp | CAGCCAGATGGCTCAGTGGGTAAAGTTGTTGTGGCTAAGCCTGGCAGCCTGAGTAAGTCAGCCCAGGGCTaGACAGAGTCAATATACTGC | + |
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Preference number: 4 (lower is better) Translates to: QPDGSVGKVVVAKPGSLSKSAQG*TESIYC Trigger: GCAGTATATTGACTCTGTGCAGCCCTGGGCTGACTT...ACTCAGGCTGCCAGGCTTAGCCACAACAACTTTACCCACTGAGCCATCTGGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR CCA 90 bp | ATCATTTACCACAGGCCAGTCACTTCCTTTAATCCTTCAACAAGCCTGACAGTGGCTCCCAGCCATGGCTaGGGGTATGAGGCTAGGGGC | + |
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Preference number: 4 (lower is better) Translates to: IIYHRPVTSFNPSTSLTVAPSHG*GYEARG Trigger: GCCCCTAGCCTCATACCCCCAGCCATGGCTGGGAGC...CACTGTCAGGCTTGTTGAAGGATTAAAGGAAGTGACTGGCCTGTGGTAAATGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR CCA 90 bp | TCAGTGGGTAAAGTTGTTGTGGCTAAGCCTGGCAGCCTGAGTTCAAACCCTAGGCTGATGACCAGTGGCTaGCTGCGCTGTGATAGCACA | + |
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Preference number: 4 (lower is better) Translates to: SVGKVVVAKPGSLSSNPRLMTSG*LRCDST Trigger: TGTGCTATCACAGCGCAGCCAGCCACTGGTCATCAG...CCTAGGGTTTGAACTCAGGCTGCCAGGCTTAGCCACAACAACTTTACCCACTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR TCA 90 bp | ATTTACCACAGGCCAGTCACTTCCTTTAATCCTTCAACAAGCCTGACAGTGTGGACAACTGCAGCAGGATaGGCTCCCAGCCATGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: IYHRPVTSFNPSTSLTVWTTAAG*APSHGW Trigger: CCAGCCATGGCTGGGAGCTCATCCTGCTGCAGTTGT...CCACACTGTCAGGCTTGTTGAAGGATTAAAGGAAGTGACTGGCCTGTGGTAAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR TCA 90 bp | CTAGAGTGTTTCAGAGGGGCTGGTCACCAAGGATCCCAGCTTCTCTGTCCATCTAAGTCAAGGTCACGTTaGTCCCAGGAGTCACAACTG | + |
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Preference number: 4 (lower is better) Translates to: LECFRGAGHQGSQLLCPSKSRSR*SQESQL Trigger: CAGTTGTGACTCCTGGGATCAACGTGACCTTGACTT...AGATGGACAGAGAAGCTGGGATCCTTGGTGACCAGCCCCTCTGAAACACTCTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR TCA 90 bp | GAAAGGAGAGGTGGGGAGCCGGAAATAAGGCACAGGAAGGAAATAGAGGTTTTCCCAGCCCCAAACGGATaGGGTTTCCCTGGGTATAGT | + |
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Preference number: 4 (lower is better) Translates to: ERRGGEPEIRHRKEIEVFPAPNG*GFPGYS Trigger: ACTATACCCAGGGAAACCTCATCCGTTTGGGGCTGG...GAAAACCTCTATTTCCTTCCTGTGCCTTATTTCCGGCTCCCCACCTCTCCTTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR GCA 90 bp | GAGATCAGATGCCTTCTTCTGGCTTCCTTGGGGAGCGAGGCCTACATGCATACAGCCACTTTTGAAGAGTaGAAACCGCCAGGCAGATTG | + |
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Preference number: 4 (lower is better) Translates to: EIRCLLLASLGSEAYMHTATFEE*KPPGRL Trigger: CAATCTGCCTGGCGGTTTGCACTCTTCAAAAGTGGC...TGTATGCATGTAGGCCTCGCTCCCCAAGGAAGCCAGAAGAAGGCATCTGATCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR GCA 90 bp | AGATGCCTTCTTCTGGCTTCCTTGGGGAGCGAGGCCTACATGCATACAGGCAAAGCCACTTTTGAAGAGTaGAAACCGCCAGGCAGATTG | + |
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Preference number: 4 (lower is better) Translates to: RCLLLASLGSEAYMHTGKATFEE*KPPGRL Trigger: CAATCTGCCTGGCGGTTTGCACTCTTCAAAAGTGGC...TTTGCCTGTATGCATGTAGGCCTCGCTCCCCAAGGAAGCCAGAAGAAGGCATCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR CCA 90 bp | GTTGTTGTGGCTAAGCCTGGCAGCCTGAGTTCAAACCCTAGGACCTACAGGATGGTTCCAGAACATTACTaGGCTGAGACCAGACACCTG | + |
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Preference number: 4 (lower is better) Translates to: VVVAKPGSLSSNPRTYRMVPEHY*AETRHL Trigger: CAGGTGTCTGGTCTCAGCCCAGTAATGTTCTGGAAC...CATCCTGTAGGTCCTAGGGTTTGAACTCAGGCTGCCAGGCTTAGCCACAACAAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR CCA 90 bp | GAAAGGAGAGGTGGGGAGCCGGAAATAAGGCACAGGAAGGAAATAGAGGTTTTCCCACCAGTGATGGTCTaGGGAGCTGATCCGTTACCA | + |
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Preference number: 4 (lower is better) Translates to: ERRGGEPEIRHRKEIEVFPPVMV*GADPLP Trigger: TGGTAACGGATCAGCTCCCCAGACCATCACTGGTGG...GAAAACCTCTATTTCCTTCCTGTGCCTTATTTCCGGCTCCCCACCTCTCCTTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR TCA 90 bp | ATCATTTACCACAGGCCAGTCACTTCCTTTAATCCTTCAACAAGCCTGACAGTGAACCGCCAGGCAGATTaGGGTGCGCGGCAAGTCAAG | + |
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Preference number: 4 (lower is better) Translates to: IIYHRPVTSFNPSTSLTVNRQAD*GARQVK Trigger: CTTGACTTGCCGCGCACCTCAATCTGCCTGGCGGTT...CACTGTCAGGCTTGTTGAAGGATTAAAGGAAGTGACTGGCCTGTGGTAAATGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR GCA 90 bp | TCAGTGGGTAAAGTTGTTGTGGCTAAGCCTGGCAGCCTGAGTTCAAACCCTAGGGCCACTTTTGAAGAGTaGAAACCGCCAGGCAGATTG | + |
|
Preference number: 4 (lower is better) Translates to: SVGKVVVAKPGSLSSNPRATFEE*KPPGRL Trigger: CAATCTGCCTGGCGGTTTGCACTCTTCAAAAGTGGC...CCTAGGGTTTGAACTCAGGCTGCCAGGCTTAGCCACAACAACTTTACCCACTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR CCA 90 bp | TCAGTGGGTAAAGTTGTTGTGGCTAAGCCTGGCAGCCTGAGTTCAAACCCTAGGGTTCCAGAACATTACTaGGCTGAGACCAGACACCTG | + |
|
Preference number: 4 (lower is better) Translates to: SVGKVVVAKPGSLSSNPRVPEHY*AETRHL Trigger: CAGGTGTCTGGTCTCAGCCCAGTAATGTTCTGGAAC...CCTAGGGTTTGAACTCAGGCTGCCAGGCTTAGCCACAACAACTTTACCCACTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
||
| 3UTR CAA 72 bp | GTTAAGAGTACTGGCTACTCTTCTAGAGGACCTTGGTaGGGGCTTCTAGCACTACATGGTGGCTCACACCCA | + |
|
Preference number: 4 (lower is better) Translates to: VKSTGYSSRGPW*GLLALHGGSHP Trigger: TGGGTGTGAGCCACCATGTAGTGCTAGAAGCCCCAACCAAGGTCCTCTAGAAGAGTAGCCAGTACTCTTAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR GCA 90 bp | ATCATTTACCACAGGCCAGTCACTTCCTTTAATCCTTCAACAAGCCTGACAGTGCCCAGGAGTCACAACTaGAGCAGGATGAGCTCCCAG | + |
|
Preference number: 4 (lower is better) Translates to: IIYHRPVTSFNPSTSLTVPRSHN*SRMSSQ Trigger: CTGGGAGCTCATCCTGCTGCAGTTGTGACTCCTGGG...CACTGTCAGGCTTGTTGAAGGATTAAAGGAAGTGACTGGCCTGTGGTAAATGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR GCA 90 bp | TCAGTGGGTAAAGTTGTTGTGGCTAAGCCTGGCAGCCTGAGTTCAAACCCTAGGGCAGAGCTCCTGCTGTaGCAATCACAAGTAACTATG | + |
|
Preference number: 4 (lower is better) Translates to: SVGKVVVAKPGSLSSNPRAELLL*QSQVTM Trigger: CATAGTTACTTGTGATTGGCACAGCAGGAGCTCTGC...CCTAGGGTTTGAACTCAGGCTGCCAGGCTTAGCCACAACAACTTTACCCACTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
||
| CDS-3UTR TCA 90 bp | CTTGGGGAGCGAGGCCTACATGCATACAGGCAAAGCATTCATATATATAAAAACAGAACATTACTGGGCTaGGACCAGACACCTGGCCCC | + |
|
Preference number: 4 (lower is better) Translates to: LGERGLHAYRQSIHIYKNRTLLG*DQTPGP Trigger: GGGGCCAGGTGTCTGGTCTCAGCCCAGTAATGTTCT...GTTTTTATATATATGAATGCTTTGCCTGTATGCATGTAGGCCTCGCTCCCCAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR CCA 90 bp | GCACAGGAAGGAAATAGAGGTTTTCAAGGGAGGATAAAGTCACTAACATTAGCTCTGAGACCAGACACCTaGCCCCCAGTCTGTCTTGCG | + |
|
Preference number: 4 (lower is better) Translates to: AQEGNRGFQGRIKSLTLALRPDT*PPVCLA Trigger: CGCAAGACAGACTGGGGGCCAGGTGTCTGGTCTCAG...AGCTAATGTTAGTGACTTTATCCTCCCTTGAAAACCTCTATTTCCTTCCTGTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| 3UTR CAA 72 bp | TGGACAGAGAAAATCAACTCCTGGAAGTTGTCTTTTTaGCCTCTACACACGGCTGAGGCCTGGGTATTACCC | + |
|
Preference number: 4 (lower is better) Translates to: WTEKINSWKLSF*PLHTAEAWVLP Trigger: GGGTAATACCCAGGCCTCAGCCGTGTGTAGAGGCAAAAAAGACAACTTCCAGGAGTTGATTTTCTCTGTCCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR TCA 90 bp | AATAAGGCACAGGAAGGAAATAGAGGTTTTCAAGGGAGGATAAAGTCACTAACAAACCGCCAGGCAGATTaGGGTGCGCGGCAAGTCAAG | + |
|
Preference number: 4 (lower is better) Translates to: NKAQEGNRGFQGRIKSLTNRQAD*GARQVK Trigger: CTTGACTTGCCGCGCACCTCAATCTGCCTGGCGGTT...TGTTAGTGACTTTATCCTCCCTTGAAAACCTCTATTTCCTTCCTGTGCCTTATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR GCA 90 bp | ATTTACCACAGGCCAGTCACTTCCTTTAATCCTTCAACAAGCCTGACAGTGTGGAAGTCAGCCCAGGGCTaGACAGAGTCAATATACTGC | + |
|
Preference number: 4 (lower is better) Translates to: IYHRPVTSFNPSTSLTVWKSAQG*TESIYC Trigger: GCAGTATATTGACTCTGTGCAGCCCTGGGCTGACTT...CCACACTGTCAGGCTTGTTGAAGGATTAAAGGAAGTGACTGGCCTGTGGTAAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR GCA 90 bp | AATTACTTAGGAGCCAGCCAGATGGCTCAGTGGGTAAAGTTGTTGTGGCTAAGCGCAGAGCTCCTGCTGTaGCAATCACAAGTAACTATG | + |
|
Preference number: 4 (lower is better) Translates to: NYLGASQMAQWVKLLWLSAELLL*QSQVTM Trigger: CATAGTTACTTGTGATTGGCACAGCAGGAGCTCTGC...GCTTAGCCACAACAACTTTACCCACTGAGCCATCTGGCTGGCTCCTAAGTAATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
||
| CDS-3UTR CCA 90 bp | AATAAGGCACAGGAAGGAAATAGAGGTTTTCAAGGGAGGATAAAGTCACTAACACTGAGACCAGACACCTaGCCCCCAGTCTGTCTTGCG | + |
|
Preference number: 4 (lower is better) Translates to: NKAQEGNRGFQGRIKSLTLRPDT*PPVCLA Trigger: CGCAAGACAGACTGGGGGCCAGGTGTCTGGTCTCAG...TGTTAGTGACTTTATCCTCCCTTGAAAACCTCTATTTCCTTCCTGTGCCTTATT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
||
| CDS-3UTR CCA 90 bp | CTTGGGGAGCGAGGCCTACATGCATACAGGCAAAGCATTCATATATATAAAAACCCACCAGTGATGGTCTaGGGAGCTGATCCGTTACCA | + |
|
Preference number: 4 (lower is better) Translates to: LGERGLHAYRQSIHIYKNPPVMV*GADPLP Trigger: TGGTAACGGATCAGCTCCCCAGACCATCACTGGTGG...GTTTTTATATATATGAATGCTTTGCCTGTATGCATGTAGGCCTCGCTCCCCAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR TCA 90 bp | ATCATTTACCACAGGCCAGTCACTTCCTTTAATCCTTCAACAAGCCTGACAGTGAAGTCAAGGTCACGTTaGTCCCAGGAGTCACAACTG | + |
|
Preference number: 4 (lower is better) Translates to: IIYHRPVTSFNPSTSLTVKSRSR*SQESQL Trigger: CAGTTGTGACTCCTGGGATCAACGTGACCTTGACTT...CACTGTCAGGCTTGTTGAAGGATTAAAGGAAGTGACTGGCCTGTGGTAAATGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
||
| CDS-3UTR GCA 90 bp | ATCATTTACCACAGGCCAGTCACTTCCTTTAATCCTTCAACAAGCCTGACAGTGTGCCAGGTGTGTGTGTaGCGATCAAAAGGAAGTCAG | + |
|
Preference number: 4 (lower is better) Translates to: IIYHRPVTSFNPSTSLTVCQVCV*RSKGSQ Trigger: CTGACTTCCTTTTGATCGGCACACACACACCTGGCA...CACTGTCAGGCTTGTTGAAGGATTAAAGGAAGTGACTGGCCTGTGGTAAATGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR CCA 90 bp | GCACAGGAAGGAAATAGAGGTTTTCAAGGGAGGATAAAGTCACTAACATTAGCTCTGATGACCAGTGGCTaGCTGCGCTGTGATAGCACA | + |
|
Preference number: 4 (lower is better) Translates to: AQEGNRGFQGRIKSLTLALMTSG*LRCDST Trigger: TGTGCTATCACAGCGCAGCCAGCCACTGGTCATCAG...AGCTAATGTTAGTGACTTTATCCTCCCTTGAAAACCTCTATTTCCTTCCTGTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR GCA 90 bp | CTTGGGGAGCGAGGCCTACATGCATACAGGCAAAGCATTCATATATATAAAAACTGCCAGGTGTGTGTGTaGCGATCAAAAGGAAGTCAG | + |
|
Preference number: 4 (lower is better) Translates to: LGERGLHAYRQSIHIYKNCQVCV*RSKGSQ Trigger: CTGACTTCCTTTTGATCGGCACACACACACCTGGCA...GTTTTTATATATATGAATGCTTTGCCTGTATGCATGTAGGCCTCGCTCCCCAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR GCA 90 bp | ATCATTTACCACAGGCCAGTCACTTCCTTTAATCCTTCAACAAGCCTGACAGTGGCAGAGCTCCTGCTGTaGCAATCACAAGTAACTATG | + |
|
Preference number: 4 (lower is better) Translates to: IIYHRPVTSFNPSTSLTVAELLL*QSQVTM Trigger: CATAGTTACTTGTGATTGGCACAGCAGGAGCTCTGC...CACTGTCAGGCTTGTTGAAGGATTAAAGGAAGTGACTGGCCTGTGGTAAATGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
||
| CDS-3UTR CCA 90 bp | CTTGGGGAGCGAGGCCTACATGCATACAGGCAAAGCATTCATATATATAAAAACGTTCCAGAACATTACTaGGCTGAGACCAGACACCTG | + |
|
Preference number: 4 (lower is better) Translates to: LGERGLHAYRQSIHIYKNVPEHY*AETRHL Trigger: CAGGTGTCTGGTCTCAGCCCAGTAATGTTCTGGAAC...GTTTTTATATATATGAATGCTTTGCCTGTATGCATGTAGGCCTCGCTCCCCAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS GCA 90 bp | CACGCCTACGCGGTACAGTGCAAAACTCATGCCCGGTATGCGGCCTaGACAGCGCAGGCTTACGTTGGCTCCCGGGGCCACCACAGGCCC | + |
|
Preference number: 5 (lower is better) Translates to: HAYAVQCKTHARYAA*TAQAYVGSRGHHRP Trigger: GGGCCTGTGGTGGCCCCGGGAGCCAACGTAAGCCTGCGCTGTGCAGGCCGCATACCGGGCATGAGTTTTGCACTGTACCGCGTAGGCGTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS GCA 90 bp | GGGTTGCCACGCCTACGCGGTACAGTGCAAAACTCATGCCCGGTATaGGGCCTGCACAGCGCAGGCTTACGTTGGCTCCCGGGGCCACCA | + |
|
Preference number: 5 (lower is better) Translates to: GLPRLRGTVQNSCPV*GLHSAGLRWLPGPP Trigger: TGGTGGCCCCGGGAGCCAACGTAAGCCTGCGCTGTGCAGGCCGCATACCGGGCATGAGTTTTGCACTGTACCGCGTAGGCGTGGCAACCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS CCA 90 bp | CAAAACTCATGCCCGGTATGCGGCCTGCACAGCGCAGGCTTACGTTaGCTCCCGGGGCCACCACAGGCCCAGGCAGTGCCACCAGTGATG | + |
|
Preference number: 5 (lower is better) Translates to: QNSCPVCGLHSAGLR*LPGPPQAQAVPPVM Trigger: CATCACTGGTGGCACTGCCTGGGCCTGTGGTGGCCCCGGGAGCCAACGTAAGCCTGCGCTGTGCAGGCCGCATACCGGGCATGAGTTTTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS GCA 90 bp | ACTGCAGAGGGGTTGCCACGCCTACGCGGTACAGTGCAAAACTCATaGCCGGTATGCGGCCTGCACAGCGCAGGCTTACGTTGGCTCCCG | + |
|
Preference number: 5 (lower is better) Translates to: TAEGLPRLRGTVQNS*PVCGLHSAGLRWLP Trigger: CGGGAGCCAACGTAAGCCTGCGCTGTGCAGGCCGCATACCGGGCATGAGTTTTGCACTGTACCGCGTAGGCGTGGCAACCCCTCTGCAGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS TCA 90 bp | CTCCCAGCCATGGCTGGGGGTATGAGGCTAGGGGCGCTGTTGGTGTaGAGTCAGCACGGCATGCAGGCCAGAGAGTCGACAGCTGGAGTA | + |
|
Preference number: 5 (lower is better) Translates to: LPAMAGGMRLGALLV*SQHGMQARESTAGV Trigger: TACTCCAGCTGTCGACTCTCTGGCCTGCATGCCGTGCTGACTTCACACCAACAGCGCCCCTAGCCTCATACCCCCAGCCATGGCTGGGAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000108645.8 |
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| CDS CCA 90 bp | CTCCCGGGGCCACCACAGGCCCAGGCAGTGCCACCAGTGATGGTCTaGGGAGCTGATCCGTTACCAGCAGTTCCAGAACATTACTGGGCT | + |
|
Preference number: 5 (lower is better) Translates to: LPGPPQAQAVPPVMV*GADPLPAVPEHYWA Trigger: AGCCCAGTAATGTTCTGGAACTGCTGGTAACGGATCAGCTCCCCAGACCATCACTGGTGGCACTGCCTGGGCCTGTGGTGGCCCCGGGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS TCA 90 bp | TACGTTGGCTCCCGGGGCCACCACAGGCCCAGGCAGTGCCACCAGTaGTGGTCTGGGGAGCTGATCCGTTACCAGCAGTTCCAGAACATT | + |
|
Preference number: 5 (lower is better) Translates to: YVGSRGHHRPRQCHQ*WSGELIRYQQFQNI Trigger: AATGTTCTGGAACTGCTGGTAACGGATCAGCTCCCCAGACCATCACTGGTGGCACTGCCTGGGCCTGTGGTGGCCCCGGGAGCCAACGTA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS TCA 90 bp | CAAGTCAAGGTCACGTTGATCCCAGGAGTCACAACTGCAGCAGGATaGGCTCCCAGCCATGGCTGGGGGTATGAGGCTAGGGGCGCTGTT | + |
|
Preference number: 5 (lower is better) Translates to: QVKVTLIPGVTTAAG*APSHGWGYEARGAV Trigger: AACAGCGCCCCTAGCCTCATACCCCCAGCCATGGCTGGGAGCTCATCCTGCTGCAGTTGTGACTCCTGGGATCAACGTGACCTTGACTTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 |
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| CDS TCA 90 bp | CAAACCGCCAGGCAGATTGAGGTGCGCGGCAAGTCAAGGTCACGTTaGTCCCAGGAGTCACAACTGCAGCAGGATGAGCTCCCAGCCATG | + |
|
Preference number: 5 (lower is better) Translates to: QTARQIEVRGKSRSR*SQESQLQQDELPAM Trigger: CATGGCTGGGAGCTCATCCTGCTGCAGTTGTGACTCCTGGGATCAACGTGACCTTGACTTGCCGCGCACCTCAATCTGCCTGGCGGTTTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS TCA 90 bp | CAAGTCAAGGTCACGTTGATCCCAGGAGTCACAACTGCAGCAGGATaGGCTCCCAGCCATGGCTGGGGGTATGAGGCTAGGGGCGAGAGA | + |
|
Preference number: 5 (lower is better) Translates to: QVKVTLIPGVTTAAG*APSHGWGYEARGER Trigger: TCTCTCGCCCCTAGCCTCATACCCCCAGCCATGGCTGGGAGCTCATCCTGCTGCAGTTGTGACTCCTGGGATCAACGTGACCTTGACTTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000148012.2 |
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| CDS GCA 90 bp | CACATCCCGGAGGAGCAGAGGGGTGACAAGGCCACTTTTGAAGAGTaGAAACCGCCAGGCAGATTGAGGTGCGCGGCAAGTCAAGGTCAC | + |
|
Preference number: 5 (lower is better) Translates to: HIPEEQRGDKATFEE*KPPGRLRCAASQGH Trigger: GTGACCTTGACTTGCCGCGCACCTCAATCTGCCTGGCGGTTTGCACTCTTCAAAAGTGGCCTTGTCACCCCTCTGCTCCTCCGGGATGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR CAA 90 bp | TCAGTGGGTAAAGTTGTTGTGGCTAAGCCTGGCAGCCTGAGTTCAAACCCTAGGCAGCGCAGGCTTACGTaGGCTCCCGGGGCCACCACA | + |
|
Preference number: 5 (lower is better) Translates to: SVGKVVVAKPGSLSSNPRQRRLT*APGATT Trigger: TGTGGTGGCCCCGGGAGCCAACGTAAGCCTGCGCTG...CCTAGGGTTTGAACTCAGGCTGCCAGGCTTAGCCACAACAACTTTACCCACTGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS GCA 90 bp | AGAGTCAATATACTGCAGAGGGGTTGCCACGCCTACGCGGTACAGTaGAAAACTCATGCCCGGTATGCGGCCTGCACAGCGCAGGCTTAC | + |
|
Preference number: 5 (lower is better) Translates to: RVNILQRGCHAYAVQ*KTHARYAACTAQAY Trigger: GTAAGCCTGCGCTGTGCAGGCCGCATACCGGGCATGAGTTTTGCACTGTACCGCGTAGGCGTGGCAACCCCTCTGCAGTATATTGACTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS GCA 90 bp | GAAGTCAGCCCAGGGCTGCACAGAGTCAATATACTGCAGAGGGGTTaGCACGCCTACGCGGTACAGTGCAAAACTCATGCCCGGTATGCG | + |
|
Preference number: 5 (lower is better) Translates to: EVSPGLHRVNILQRG*HAYAVQCKTHARYA Trigger: CGCATACCGGGCATGAGTTTTGCACTGTACCGCGTAGGCGTGGCAACCCCTCTGCAGTATATTGACTCTGTGCAGCCCTGGGCTGACTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS TCA 90 bp | GGGGTGACAAGGCCACTTTTGAAGAGTGCAAACCGCCAGGCAGATTaGGGTGCGCGGCAAGTCAAGGTCACGTTGATCCCAGGAGTCACA | + |
|
Preference number: 5 (lower is better) Translates to: GVTRPLLKSANRQAD*GARQVKVTLIPGVT Trigger: TGTGACTCCTGGGATCAACGTGACCTTGACTTGCCGCGCACCTCAATCTGCCTGGCGGTTTGCACTCTTCAAAAGTGGCCTTGTCACCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS GCA 90 bp | GACAAGGCCACTTTTGAAGAGTGCAAACCGCCAGGCAGATTGAGGTaGGCGGCAAGTCAAGGTCACGTTGATCCCAGGAGTCACAACTGC | + |
|
Preference number: 5 (lower is better) Translates to: DKATFEECKPPGRLR*AASQGHVDPRSHNC Trigger: GCAGTTGTGACTCCTGGGATCAACGTGACCTTGACTTGCCGCGCACCTCAATCTGCCTGGCGGTTTGCACTCTTCAAAAGTGGCCTTGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS GCA 90 bp | CAGAAGGCGTGTGGTAATAGCAACAGTAGGTGCCAGGTGTGTGTGTaGCGATCAAAAGGAAGTCAGCCCAGGGCTGCACAGAGTCAATAT | + |
|
Preference number: 5 (lower is better) Translates to: QKACGNSNSRCQVCV*RSKGSQPRAAQSQY Trigger: ATATTGACTCTGTGCAGCCCTGGGCTGACTTCCTTTTGATCGGCACACACACACCTGGCACCTACTGTTGCTATTACCACACGCCTTCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR CAA 90 bp | GAGATCAGATGCCTTCTTCTGGCTTCCTTGGGGAGCGAGGCCTACATGCATACACAAGTCAAGGTCACGTaGATCCCAGGAGTCACAACT | + |
|
Preference number: 5 (lower is better) Translates to: EIRCLLLASLGSEAYMHTQVKVT*IPGVTT Trigger: AGTTGTGACTCCTGGGATCAACGTGACCTTGACTTG...TGTATGCATGTAGGCCTCGCTCCCCAAGGAAGCCAGAAGAAGGCATCTGATCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
||
| CDS-3UTR CAA 90 bp | GCACAGGAAGGAAATAGAGGTTTTCAAGGGAGGATAAAGTCACTAACATTAGCTCAGCGCAGGCTTACGTaGGCTCCCGGGGCCACCACA | + |
|
Preference number: 5 (lower is better) Translates to: AQEGNRGFQGRIKSLTLAQRRLT*APGATT Trigger: TGTGGTGGCCCCGGGAGCCAACGTAAGCCTGCGCTG...AGCTAATGTTAGTGACTTTATCCTCCCTTGAAAACCTCTATTTCCTTCCTGTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS GCA 90 bp | CCAATCACAAGTAACTATGATGCCCAAGCAGATGAGGACCATTCCTaGCAGCCCCAAACGGATGAGGTTTCCCTGGGTATAGTCCAAGGA | + |
|
Preference number: 5 (lower is better) Translates to: PITSNYDAQADEDHS*QPQTDEVSLGIVQG Trigger: TCCTTGGACTATACCCAGGGAAACCTCATCCGTTTGGGGCTGGCAGGAATGGTCCTCATCTGCTTGGGCATCATAGTTACTTGTGATTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS-3UTR CAA 90 bp | AATAAGGCACAGGAAGGAAATAGAGGTTTTCAAGGGAGGATAAAGTCACTAACACAGCGCAGGCTTACGTaGGCTCCCGGGGCCACCACA | + |
|
Preference number: 5 (lower is better) Translates to: NKAQEGNRGFQGRIKSLTQRRLT*APGATT Trigger: TGTGGTGGCCCCGGGAGCCAACGTAAGCCTGCGCTG...TGTTAGTGACTTTATCCTCCCTTGAAAACCTCTATTTCCTTCCTGTGCCTTATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
||
| CDS-3UTR CAA 90 bp | AACATCATTTACCACAGGCCAGTCACTTCCTTTAATCCTTCAACAAGCCTGACACAAGTCAAGGTCACGTaGATCCCAGGAGTCACAACT | + |
|
Preference number: 5 (lower is better) Translates to: NIIYHRPVTSFNPSTSLTQVKVT*IPGVTT Trigger: AGTTGTGACTCCTGGGATCAACGTGACCTTGACTTG...TGTCAGGCTTGTTGAAGGATTAAAGGAAGTGACTGGCCTGTGGTAAATGATGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS CAA 72 bp | ATGCCCGGTATGCGGCCTGCACAGCGCAGGCTTACGTaGGCTCCCGGGGCCACCACAGGCCCAGGCAGTGCC | + |
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Preference number: 6 (lower is better) Translates to: MPGMRPAQRRLT*APGATTGPGSA Trigger: GGCACTGCCTGGGCCTGTGGTGGCCCCGGGAGCCAACGTAAGCCTGCGCTGTGCAGGCCGCATACCGGGCAT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS CAA 90 bp | GCAAAACTCATGCCCGGTATGCGGCCTGCACAGCGCAGGCTTACGTaGGCTCCCGGGGCCACCACAGGCCCAGGCAGTGCCACCAGTGAT | + |
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Preference number: 6 (lower is better) Translates to: AKLMPGMRPAQRRLT*APGATTGPGSATSD Trigger: ATCACTGGTGGCACTGCCTGGGCCTGTGGTGGCCCCGGGAGCCAACGTAAGCCTGCGCTGTGCAGGCCGCATACCGGGCATGAGTTTTGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS TCA 72 bp | TCCCGGGGCCACCACAGGCCCAGGCAGTGCCACCAGTaGTGGTCTGGGGAGCTGATCCGTTACCAGCAGTTC | + |
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Preference number: 6 (lower is better) Translates to: SRGHHRPRQCHQ*WSGELIRYQQF Trigger: GAACTGCTGGTAACGGATCAGCTCCCCAGACCATCACTGGTGGCACTGCCTGGGCCTGTGGTGGCCCCGGGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS GCA 72 bp | GCGGTACAGTGCAAAACTCATGCCCGGTATGCGGCCTaGACAGCGCAGGCTTACGTTGGCTCCCGGGGCCAC | + |
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Preference number: 6 (lower is better) Translates to: AVQCKTHARYAA*TAQAYVGSRGH Trigger: GTGGCCCCGGGAGCCAACGTAAGCCTGCGCTGTGCAGGCCGCATACCGGGCATGAGTTTTGCACTGTACCGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS GCA 72 bp | CGCCTACGCGGTACAGTGCAAAACTCATGCCCGGTATaGGGCCTGCACAGCGCAGGCTTACGTTGGCTCCCG | + |
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Preference number: 6 (lower is better) Translates to: RLRGTVQNSCPV*GLHSAGLRWLP Trigger: CGGGAGCCAACGTAAGCCTGCGCTGTGCAGGCCGCATACCGGGCATGAGTTTTGCACTGTACCGCGTAGGCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS GCA 72 bp | GGGTTGCCACGCCTACGCGGTACAGTGCAAAACTCATaGCCGGTATGCGGCCTGCACAGCGCAGGCTTACGT | + |
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Preference number: 6 (lower is better) Translates to: GLPRLRGTVQNS*PVCGLHSAGLR Trigger: ACGTAAGCCTGCGCTGTGCAGGCCGCATACCGGGCATGAGTTTTGCACTGTACCGCGTAGGCGTGGCAACCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS TCA 72 bp | GTCACGTTGATCCCAGGAGTCACAACTGCAGCAGGATaGGCTCCCAGCCATGGCTGGGGGTATGAGGCTAGG | + |
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Preference number: 6 (lower is better) Translates to: VTLIPGVTTAAG*APSHGWGYEAR Trigger: CCTAGCCTCATACCCCCAGCCATGGCTGGGAGCTCATCCTGCTGCAGTTGTGACTCCTGGGATCAACGTGAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS CCA 72 bp | CCACCACAGGCCCAGGCAGTGCCACCAGTGATGGTCTaGGGAGCTGATCCGTTACCAGCAGTTCCAGAACAT | + |
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Preference number: 6 (lower is better) Translates to: PPQAQAVPPVMV*GADPLPAVPEH Trigger: ATGTTCTGGAACTGCTGGTAACGGATCAGCTCCCCAGACCATCACTGGTGGCACTGCCTGGGCCTGTGGTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS CAA 90 bp | GGAAGTCAGCCCAGGGCTGCACAGAGTCAATATACTGCAGAGGGGTaGCCACGCCTACGCGGTACAGTGCAAAACTCATGCCCGGTATGC | + |
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Preference number: 6 (lower is better) Translates to: GSQPRAAQSQYTAEG*PRLRGTVQNSCPVC Trigger: GCATACCGGGCATGAGTTTTGCACTGTACCGCGTAGGCGTGGCAACCCCTCTGCAGTATATTGACTCTGTGCAGCCCTGGGCTGACTTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS CAA 72 bp | GTCTGTCTTGCGGTAGCGGCAGTGATAACTGCCCCCTaGGGCCGGAGTCACTTCTTCCAGGAAGAACTCAGC | + |
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Preference number: 6 (lower is better) Translates to: VCLAVAAVITAP*GRSHFFQEELS Trigger: GCTGAGTTCTTCCTGGAAGAAGTGACTCCGGCCCAAGGGGGCAGTTATCACTGCCGCTACCGCAAGACAGAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS CAA 90 bp | AGGGGTGACAAGGCCACTTTTGAAGAGTGCAAACCGCCAGGCAGATaGAGGTGCGCGGCAAGTCAAGGTCACGTTGATCCCAGGAGTCAC | + |
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Preference number: 6 (lower is better) Translates to: RGDKATFEECKPPGR*RCAASQGHVDPRSH Trigger: GTGACTCCTGGGATCAACGTGACCTTGACTTGCCGCGCACCTCAATCTGCCTGGCGGTTTGCACTCTTCAAAAGTGGCCTTGTCACCCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS TCA 72 bp | AGGCAGATTGAGGTGCGCGGCAAGTCAAGGTCACGTTaGTCCCAGGAGTCACAACTGCAGCAGGATGAGCTC | + |
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Preference number: 6 (lower is better) Translates to: RQIEVRGKSRSR*SQESQLQQDEL Trigger: GAGCTCATCCTGCTGCAGTTGTGACTCCTGGGATCAACGTGACCTTGACTTGCCGCGCACCTCAATCTGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS CCA 72 bp | CAGTTCCAGAACATTACTGGGCTGAGACCAGACACCTaGCCCCCAGTCTGTCTTGCGGTAGCGGCAGTGATA | + |
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Preference number: 6 (lower is better) Translates to: QFQNITGLRPDT*PPVCLAVAAVI Trigger: TATCACTGCCGCTACCGCAAGACAGACTGGGGGCCAGGTGTCTGGTCTCAGCCCAGTAATGTTCTGGAACTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS CAA 72 bp | CCCAGGGCTGCACAGAGTCAATATACTGCAGAGGGGTaGCCACGCCTACGCGGTACAGTGCAAAACTCATGC | + |
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Preference number: 6 (lower is better) Translates to: PRAAQSQYTAEG*PRLRGTVQNSC Trigger: GCATGAGTTTTGCACTGTACCGCGTAGGCGTGGCAACCCCTCTGCAGTATATTGACTCTGTGCAGCCCTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS TCA 72 bp | AGGCCACTTTTGAAGAGTGCAAACCGCCAGGCAGATTaGGGTGCGCGGCAAGTCAAGGTCACGTTGATCCCA | + |
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Preference number: 6 (lower is better) Translates to: RPLLKSANRQAD*GARQVKVTLIP Trigger: TGGGATCAACGTGACCTTGACTTGCCGCGCACCTCAATCTGCCTGGCGGTTTGCACTCTTCAAAAGTGGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS CAA 72 bp | AAGGCCACTTTTGAAGAGTGCAAACCGCCAGGCAGATaGAGGTGCGCGGCAAGTCAAGGTCACGTTGATCCC | + |
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Preference number: 6 (lower is better) Translates to: KATFEECKPPGR*RCAASQGHVDP Trigger: GGGATCAACGTGACCTTGACTTGCCGCGCACCTCAATCTGCCTGGCGGTTTGCACTCTTCAAAAGTGGCCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS GCA 72 bp | ACTTTTGAAGAGTGCAAACCGCCAGGCAGATTGAGGTaGGCGGCAAGTCAAGGTCACGTTGATCCCAGGAGT | + |
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Preference number: 6 (lower is better) Translates to: TFEECKPPGRLR*AASQGHVDPRS Trigger: ACTCCTGGGATCAACGTGACCTTGACTTGCCGCGCACCTCAATCTGCCTGGCGGTTTGCACTCTTCAAAAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS GCA 72 bp | TGTGGTAATAGCAACAGTAGGTGCCAGGTGTGTGTGTaGCGATCAAAAGGAAGTCAGCCCAGGGCTGCACAG | + |
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Preference number: 6 (lower is better) Translates to: CGNSNSRCQVCV*RSKGSQPRAAQ Trigger: CTGTGCAGCCCTGGGCTGACTTCCTTTTGATCGGCACACACACACCTGGCACCTACTGTTGCTATTACCACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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| CDS GCA 72 bp | AGTAACTATGATGCCCAAGCAGATGAGGACCATTCCTaGCAGCCCCAAACGGATGAGGTTTCCCTGGGTATA | + |
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Preference number: 6 (lower is better) Translates to: SNYDAQADEDHS*QPQTDEVSLGI Trigger: TATACCCAGGGAAACCTCATCCGTTTGGGGCTGGCAGGAATGGTCCTCATCTGCTTGGGCATCATAGTTACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000039507.15 ENSMUST00000108645.8 ENSMUST00000148012.2 |
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