Pregenerated sensors for ORMDL3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038150Ensembl transcript IDs: ENSMUST00000052919.8
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACCCATCGTGGGTTGCCAGGAAGCCCACAAAGCCCGCCTGCTCCCTaGCTGGCGGCAGAGGCAGCACGGCGCAGGGTTCTAATACATACA | + |
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Preference number: 1 (lower is better) Translates to: THRGLPGSPQSPPAP*LAAEAARRRVLIHT Trigger: TGTATGTATTAGAACCCTGCGCCGTGCTGCCTCTGCCGCCAGGCAGGGAGCAGGCGGGCTTTGTGGGCTTCCTGGCAACCCACGATGGGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| 3UTR CCA 90 bp | CCATCTTCCTTTCCTAATCTCCCCTGCCCCACAGCCTACCCATCGTaGGTTGCCAGGAAGCCCACAAAGCCCGCCTGCTCCCTGCCTGGC | + |
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Preference number: 1 (lower is better) Translates to: PSSFPNLPCPTAYPS*VARKPTKPACSLPG Trigger: GCCAGGCAGGGAGCAGGCGGGCTTTGTGGGCTTCCTGGCAACCCACGATGGGTAGGCTGTGGGGCAGGGGAGATTAGGAAAGGAAGATGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| 3UTR CCA 90 bp | CAGAGATCCTGTAGCACTGTGGAGGCCACTGACCACATGTGGAGGTaGCCTCCTGACCATTCACATGCAAGCCACACAAGAGGCACTGCC | + |
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Preference number: 1 (lower is better) Translates to: QRSCSTVEATDHMWR*PPDHSHASHTRGTA Trigger: GGCAGTGCCTCTTGTGTGGCTTGCATGTGAATGGTCAGGAGGCCACCTCCACATGTGGTCAGTGGCCTCCACAGTGCTACAGGATCTCTG 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| 3UTR CCA 90 bp | GTGCTATGGCTGCCTGAGGGTAAACAAGCCAACAGGGCCTTTTCCTaGCTTCCTGTCCCAATTTCTCAGGCCCACAGTCAGCCAGAGAGC | + |
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Preference number: 1 (lower is better) Translates to: VLWLPEGKQANRAFS*LPVPISQAHSQPES Trigger: GCTCTCTGGCTGACTGTGGGCCTGAGAAATTGGGACAGGAAGCCAGGAAAAGGCCCTGTTGGCTTGTTTACCCTCAGGCAGCCATAGCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| 3UTR-3UTR GCA 90 bp | CTCCACGCCAGCTCTCCTCCTAGCCCACATCTCAGAGGAGGCGGAGTCTGGCTTAGCCCGCCTGCTCCCTaGCTGGCGGCAGAGGCAGCA | + |
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Preference number: 2 (lower is better) Translates to: LHASSPPSPHLRGGGVWLSPPAP*LAAEAA Trigger: TGCTGCCTCTGCCGCCAGGCAGGGAGCAGGCGGGCT...AAGCCAGACTCCGCCTCCTCTGAGATGTGGGCTAGGAGGAGAGCTGGCGTGGAG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| 3UTR CAA 90 bp | CTTCCTTTCCTAATCTCCCCTGCCCCACAGCCTACCCATCGTGGGTaGCCAGGAAGCCCACAAAGCCCGCCTGCTCCCTGCCTGGCGGCA | + |
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Preference number: 2 (lower is better) Translates to: LPFLISPAPQPTHRG*PGSPQSPPAPCLAA Trigger: TGCCGCCAGGCAGGGAGCAGGCGGGCTTTGTGGGCTTCCTGGCAACCCACGATGGGTAGGCTGTGGGGCAGGGGAGATTAGGAAAGGAAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| 3UTR-3UTR GCA 90 bp | GGTGGCCTCCTGACCATTCACATGCAAGCCACACAAGAGGCACTGCCCCAGCACCCCACAAAGCCCGCCTaGTCCCTGCCTGGCGGCAGA | + |
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Preference number: 2 (lower is better) Translates to: GGLLTIHMQATQEALPQHPTKPA*SLPGGR Trigger: TCTGCCGCCAGGCAGGGAGCAGGCGGGCTTTGTGGG...GTGCTGGGGCAGTGCCTCTTGTGTGGCTTGCATGTGAATGGTCAGGAGGCCACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| 3UTR-3UTR CCA 90 bp | CCTAATCTCCCCTGCCCCACAGCCTACCCATCGTGGGTTGCCAGGAAGCCCACACTCCAAGTCGGCTACTaGGGAAGCGAGGGGGAAGCC | + |
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Preference number: 2 (lower is better) Translates to: PNLPCPTAYPSWVARKPTLQVGY*GSEGEA Trigger: GGCTTCCCCCTCGCTTCCCCAGTAGCCGACTTGGAG...TGTGGGCTTCCTGGCAACCCACGATGGGTAGGCTGTGGGGCAGGGGAGATTAGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| 3UTR-3UTR GCA 90 bp | GGTGGCCTCCTGACCATTCACATGCAAGCCACACAAGAGGCACTGCCCCAGCACTCCCCACCCAACCCTTaGTCAGAACTCCCCTCTCCC | + |
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Preference number: 2 (lower is better) Translates to: GGLLTIHMQATQEALPQHSPPNP*SELPSP Trigger: GGGAGAGGGGAGTTCTGAGCAAGGGTTGGGTGGGGA...GTGCTGGGGCAGTGCCTCTTGTGTGGCTTGCATGTGAATGGTCAGGAGGCCACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| 3UTR-3UTR TCA 90 bp | CTCCACGCCAGCTCTCCTCCTAGCCCACATCTCAGAGGAGGCGGAGTCTGGCTTTCTCGCTTCACACACTaGAGGAATGAGGGCAACCAA | + |
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Preference number: 2 (lower is better) Translates to: LHASSPPSPHLRGGGVWLSRFTH*RNEGNQ Trigger: TTGGTTGCCCTCATTCCTTCAGTGTGTGAAGCGAGA...AAGCCAGACTCCGCCTCCTCTGAGATGTGGGCTAGGAGGAGAGCTGGCGTGGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| 3UTR-3UTR GCA 90 bp | CTTCCAGCCTGTGCATATCCTCATTCCAACCCAGGAGTTCAAACCCACAGGGGCTTTCCTAATCTCCCCTaGCCCACAGCCTACCCATCG | + |
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Preference number: 2 (lower is better) Translates to: LPACAYPHSNPGVQTHRGFPNLP*PTAYPS Trigger: CGATGGGTAGGCTGTGGGGCAGGGGAGATTAGGAAA...GCCCCTGTGGGTTTGAACTCCTGGGTTGGAATGAGGATATGCACAGGCTGGAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| 3UTR-3UTR CCA 90 bp | TTCCCTATGATACACTGGGTTCAGAATGAGGGGGAGGGGGACAAACAGGTGAGTGCACACCCCCATCTCTaGCAGTGTCCAGAGGCTCCT | + |
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Preference number: 2 (lower is better) Translates to: FPMIHWVQNEGEGDKQVSAHPHL*QCPEAP Trigger: AGGAGCCTCTGGACACTGCCAGAGATGGGGGTGTGC...ACTCACCTGTTTGTCCCCCTCCCCCTCATTCTGAACCCAGTGTATCATAGGGAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| 3UTR-3UTR TCA 90 bp | ATGCAAGCCACACAAGAGGCACTGCCCCAGCACAATCTACACAAGAATACGAATGCCCAGCCTCTTTCCTaGCCACCCCCATGGCATCTC | + |
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Preference number: 2 (lower is better) Translates to: MQATQEALPQHNLHKNTNAQPLS*PPPWHL Trigger: GAGATGCCATGGGGGTGGTCAGGAAAGAGGCTGGGC...ATTCGTATTCTTGTGTAGATTGTGCTGGGGCAGTGCCTCTTGTGTGGCTTGCAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| 3UTR-3UTR CCA 90 bp | CCTATGATACACTGGGTTCAGAATGAGGGGGAGGGGGACAAACAGGTGAGTGACGCCCCTACTACTGCCTaGTTTGGGCAGAGATCCTGT | + |
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Preference number: 2 (lower is better) Translates to: PMIHWVQNEGEGDKQVSDAPTTA*FGQRSC Trigger: ACAGGATCTCTGCCCAAACCAGGCAGTAGTAGGGGC...GTCACTCACCTGTTTGTCCCCCTCCCCCTCATTCTGAACCCAGTGTATCATAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| 3UTR-3UTR CCA 90 bp | CCTATGATACACTGGGTTCAGAATGAGGGGGAGGGGGACAAACAGGTGAGTGACAACAGGGCCTTTTCCTaGCTTCCTGTCCCAATTTCT | + |
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Preference number: 2 (lower is better) Translates to: PMIHWVQNEGEGDKQVSDNRAFS*LPVPIS Trigger: AGAAATTGGGACAGGAAGCCAGGAAAAGGCCCTGTT...GTCACTCACCTGTTTGTCCCCCTCCCCCTCATTCTGAACCCAGTGTATCATAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| 3UTR-3UTR CCA 90 bp | TTCCCTATGATACACTGGGTTCAGAATGAGGGGGAGGGGGACAAACAGGTGAGTGGGGCTAAAGTGCTATaGCTGCCTGAGGGTAAACAA | + |
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Preference number: 2 (lower is better) Translates to: FPMIHWVQNEGEGDKQVSGAKVL*LPEGKQ Trigger: TTGTTTACCCTCAGGCAGCCATAGCACTTTAGCCCC...ACTCACCTGTTTGTCCCCCTCCCCCTCATTCTGAACCCAGTGTATCATAGGGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| 3UTR CCA 72 bp | TTTCCTAATCTCCCCTGCCCCACAGCCTACCCATCGTaGGTTGCCAGGAAGCCCACAAAGCCCGCCTGCTCC | + |
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Preference number: 3 (lower is better) Translates to: FPNLPCPTAYPS*VARKPTKPACS Trigger: GGAGCAGGCGGGCTTTGTGGGCTTCCTGGCAACCCACGATGGGTAGGCTGTGGGGCAGGGGAGATTAGGAAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| 3UTR TCA 72 bp | CTAGCCTCAGGCTCCATGACCTGCCTCTCTTTGGGCTaGGGACAGTGCCTGCAGCTGCCCCTACTACTGCCT | + |
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Preference number: 3 (lower is better) Translates to: LASGSMTCLSLG*GQCLQLPLLLP Trigger: AGGCAGTAGTAGGGGCAGCTGCAGGCACTGTCCTCAGCCCAAAGAGAGGCAGGTCATGGAGCCTGAGGCTAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| 3UTR GCA 72 bp | CCTGCCTCTCTTTGGGCTGAGGACAGTGCCTGCAGCTaGCCCTACTACTGCCTGGTTTGGGCAGAGATCCTG | + |
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Preference number: 3 (lower is better) Translates to: PASLWAEDSACS*PYYCLVWAEIL Trigger: CAGGATCTCTGCCCAAACCAGGCAGTAGTAGGGGCAGCTGCAGGCACTGTCCTCAGCCCAAAGAGAGGCAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| 3UTR CCA 72 bp | CTGAGGACAGTGCCTGCAGCTGCCCCTACTACTGCCTaGTTTGGGCAGAGATCCTGTAGCACTGTGGAGGCC | + |
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Preference number: 3 (lower is better) Translates to: LRTVPAAAPTTA*FGQRSCSTVEA Trigger: GGCCTCCACAGTGCTACAGGATCTCTGCCCAAACCAGGCAGTAGTAGGGGCAGCTGCAGGCACTGTCCTCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| 3UTR CCA 72 bp | AGATCCTGTAGCACTGTGGAGGCCACTGACCACATGTaGAGGTGGCCTCCTGACCATTCACATGCAAGCCAC | + |
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Preference number: 3 (lower is better) Translates to: RSCSTVEATDHM*RWPPDHSHASH Trigger: GTGGCTTGCATGTGAATGGTCAGGAGGCCACCTCCACATGTGGTCAGTGGCCTCCACAGTGCTACAGGATCT 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| 3UTR TCA 72 bp | AGGCCCACAGTCAGCCAGAGAGCCCAGCCTCTTTCCTaGCCACCCCCATGGCATCTCTATTCAAAAGGCAAA | + |
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Preference number: 3 (lower is better) Translates to: RPTVSQRAQPLS*PPPWHLYSKGK Trigger: TTTGCCTTTTGAATAGAGATGCCATGGGGGTGGTCAGGAAAGAGGCTGGGCTCTCTGGCTGACTGTGGGCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| 3UTR CCA 72 bp | CTGCCTGAGGGTAAACAAGCCAACAGGGCCTTTTCCTaGCTTCCTGTCCCAATTTCTCAGGCCCACAGTCAG | + |
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Preference number: 3 (lower is better) Translates to: LPEGKQANRAFS*LPVPISQAHSQ Trigger: CTGACTGTGGGCCTGAGAAATTGGGACAGGAAGCCAGGAAAAGGCCCTGTTGGCTTGTTTACCCTCAGGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| 3UTR TCA 72 bp | ACAGAACAGCGAGTCTCGCTTCACACACTGAAGGAATaGGGGCAACCAATGCAGAAGCTGTACCGTCCCTCT | + |
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Preference number: 3 (lower is better) Translates to: TEQRVSLHTLKE*GQPMQKLYRPS Trigger: AGAGGGACGGTACAGCTTCTGCATTGGTTGCCCTCATTCCTTCAGTGTGTGAAGCGAGACTCGCTGTTCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| 3UTR-3UTR CAA 90 bp | AGTGTCGAAGTGAACCCGCTTCTGAGGACTCACAGGCCCTTCCAGCCTGTGCATTCGGCTGCAGTTATCTaGTCCATTCTAAGTAAGACC | + |
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Preference number: 3 (lower is better) Translates to: SVEVNPLLRTHRPFQPVHSAAVI*SILSKT Trigger: GGTCTTACTTAGAATGGACAAGATAACTGCAGCCGA...ATGCACAGGCTGGAAGGGCCTGTGAGTCCTCAGAAGCGGGTTCACTTCGACACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| 3UTR TCA 72 bp | GCACTGCCCCAGCACAATCTACACAAGAATACGAATTaGACGCTTAAGGAAGAGCCTCTCAGAAAGCTTCCG | + |
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Preference number: 3 (lower is better) Translates to: ALPQHNLHKNTN*TLKEEPLRKLP Trigger: CGGAAGCTTTCTGAGAGGCTCTTCCTTAAGCGTTCAATTCGTATTCTTGTGTAGATTGTGCTGGGGCAGTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| CDS-3UTR CCA 90 bp | CTCCACGCCAGCTCTCCTCCTAGCCCACATCTCAGAGGAGGCGGAGTCTGGCTTAAGATCCGGACTCCGTaGAGCTGGGGGAGCTTGGGA | + |
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Preference number: 4 (lower is better) Translates to: LHASSPPSPHLRGGGVWLKIRTP*SWGSLG Trigger: TCCCAAGCTCCCCCAGCTCCACGGAGTCCGGATCTT...AAGCCAGACTCCGCCTCCTCTGAGATGTGGGCTAGGAGGAGAGCTGGCGTGGAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| CDS-3UTR CCA 90 bp | CTCCACGCCAGCTCTCCTCCTAGCCCACATCTCAGAGGAGGCGGAGTCTGGCTTTGCTTTGCCTTGGTCTaGAGTCTCGAAGGGCGTCCC | + |
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Preference number: 4 (lower is better) Translates to: LHASSPPSPHLRGGGVWLCFALV*SLEGRP Trigger: GGGACGCCCTTCGAGACTCCAGACCAAGGCAAAGCA...AAGCCAGACTCCGCCTCCTCTGAGATGTGGGCTAGGAGGAGAGCTGGCGTGGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| CDS-3UTR CCA 90 bp | CCTAGCCCACATCTCAGAGGAGGCGGAGTCTGGCTTCTCCTTCCCAGACCTCTTCGGACTCCGTGGAGCTaGGGGAGCTTGGGAATGAGC | + |
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Preference number: 4 (lower is better) Translates to: PSPHLRGGGVWLLLPRPLRTPWS*GSLGMS Trigger: GCTCATTCCCAAGCTCCCCCAGCTCCACGGAGTCCG...AAGAGGTCTGGGAAGGAGAAGCCAGACTCCGCCTCCTCTGAGATGTGGGCTAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| 3UTR CAA 72 bp | GGACAGTGCCTGCAGCTGCCCCTACTACTGCCTGGTTaGGGCAGAGATCCTGTAGCACTGTGGAGGCCACTG | + |
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Preference number: 4 (lower is better) Translates to: GQCLQLPLLLPG*GRDPVALWRPL Trigger: CAGTGGCCTCCACAGTGCTACAGGATCTCTGCCCAAACCAGGCAGTAGTAGGGGCAGCTGCAGGCACTGTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| CDS-3UTR CCA 90 bp | CTCCACGCCAGCTCTCCTCCTAGCCCACATCTCAGAGGAGGCGGAGTCTGGCTTTCCATCTGCTCCCAGTaGGTCAGCAACCTTGCTTTG | + |
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Preference number: 4 (lower is better) Translates to: LHASSPPSPHLRGGGVWLSICSQ*VSNLAL Trigger: CAAAGCAAGGTTGCTGACCCACTGGGAGCAGATGGA...AAGCCAGACTCCGCCTCCTCTGAGATGTGGGCTAGGAGGAGAGCTGGCGTGGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| CDS-3UTR GCA 90 bp | CCCAAGGGCCCCACCCTAACCCCACTACAAGCTACTCCAAGTCGGCTACTGGGGTCAGCAACCTTGCTTTaGCTTGGTCTGGAGTCTCGA | + |
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Preference number: 4 (lower is better) Translates to: PKGPTLTPLQATPSRLLGSATLL*LGLESR Trigger: TCGAGACTCCAGACCAAGGCAAAGCAAGGTTGCTGA...CCCCAGTAGCCGACTTGGAGTAGCTTGTAGTGGGGTTAGGGTGGGGCCCTTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| CDS-3UTR CCA 90 bp | GCTCCTGTCTTCAGCATCACAGCAAAGGCCTTCCACCCTTCCCCTGCCAACCCGAACCTTGCTTTGCCTTaGTCTGGAGTCTCGAAGGGC | + |
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Preference number: 4 (lower is better) Translates to: APVFSITAKAFHPSPANPNLALP*SGVSKG Trigger: GCCCTTCGAGACTCCAGACCAAGGCAAAGCAAGGTT...CGGGTTGGCAGGGGAAGGGTGGAAGGCCTTTGCTGTGATGCTGAAGACAGGAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| CDS-3UTR TCA 90 bp | AGTGTCGAAGTGAACCCGCTTCTGAGGACTCACAGGCCCTTCCAGCCTGTGCATGGGGGAGCTTGGGAATaGGCACAGTCATCAAGGACA | + |
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Preference number: 4 (lower is better) Translates to: SVEVNPLLRTHRPFQPVHGGAWE*AQSSRT Trigger: TGTCCTTGATGACTGTGCTCATTCCCAAGCTCCCCC...ATGCACAGGCTGGAAGGGCCTGTGAGTCCTCAGAAGCGGGTTCACTTCGACACT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| CDS-3UTR GCA 90 bp | CTTCCAGCCTGTGCATATCCTCATTCCAACCCAGGAGTTCAAACCCACAGGGGCCGTAGGAGAGCCAGATaGCGCGACTGTTCATCACCC | + |
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Preference number: 4 (lower is better) Translates to: LPACAYPHSNPGVQTHRGRRRAR*RDCSSP Trigger: GGGTGATGAACAGTCGCGGCATCTGGCTCTCCTACG...GCCCCTGTGGGTTTGAACTCCTGGGTTGGAATGAGGATATGCACAGGCTGGAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| CDS-3UTR CCA 90 bp | CCTAGCCCACATCTCAGAGGAGGCGGAGTCTGGCTTCTCCTTCCCAGACCTCTTTCATCACCCGTGTGTTaGGGTTCACCTCACTGTGTG | + |
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Preference number: 4 (lower is better) Translates to: PSPHLRGGGVWLLLPRPLSSPVC*GSPHCV Trigger: CACACAGTGAGGTGAACCCCAACACACGGGTGATGA...AAGAGGTCTGGGAAGGAGAAGCCAGACTCCGCCTCCTCTGAGATGTGGGCTAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| CDS-3UTR CCA 90 bp | ACAAGAATACGAATTGAACGCTTAAGGAAGAGCCTCTCAGAAAGCTTCCGCGCGCATGCAGGAGTCCGATaGCCAGCACGTAGGAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: TRIRIERLRKSLSESFRAHAGVR*PARRRA Trigger: GGCTCTCCTACGTGCTGGCCATCGGACTCCTGCATG...CGCGCGGAAGCTTTCTGAGAGGCTCTTCCTTAAGCGTTCAATTCGTATTCTTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| CDS-3UTR GCA 90 bp | AGTCTCGCTTCACACACTGAAGGAATGAGGGCAACCAATGCAGAAGCTGTACCGCGCTCACAAAGGGAATaGTCAGCAGCACGACATGCA | + |
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Preference number: 4 (lower is better) Translates to: SLASHTEGMRATNAEAVPRSQRE*SAARHA Trigger: TGCATGTCGTGCTGCTGAGCATTCCCTTTGTGAGCG...CGGTACAGCTTCTGCATTGGTTGCCCTCATTCCTTCAGTGTGTGAAGCGAGACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| CDS-3UTR CCA 90 bp | GGTGGCCTCCTGACCATTCACATGCAAGCCACACAAGAGGCACTGCCCCAGCACGTGTTGAGTATGAAATaGACTTGGTCATACTTGGTG | + |
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Preference number: 4 (lower is better) Translates to: GGLLTIHMQATQEALPQHVLSMK*TWSYLV Trigger: CACCAAGTATGACCAAGTCCATTTCATACTCAACAC...GTGCTGGGGCAGTGCCTCTTGTGTGGCTTGCATGTGAATGGTCAGGAGGCCACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| CDS-3UTR GCA 90 bp | ACAAGAATACGAATTGAACGCTTAAGGAAGAGCCTCTCAGAAAGCTTCCGCGCGGTCCCTTTCACGGTGTaGAGAAAGATGTACATGCCC | + |
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Preference number: 4 (lower is better) Translates to: TRIRIERLRKSLSESFRAVPFTV*RKMYMP Trigger: GGGCATGTACATCTTTCTGCACACCGTGAAAGGGAC...CGCGCGGAAGCTTTCTGAGAGGCTCTTCCTTAAGCGTTCAATTCGTATTCTTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| CDS-3UTR CCA 90 bp | ACAAGAATACGAATTGAACGCTTAAGGAAGAGCCTCTCAGAAAGCTTCCGCGCGTACATGCCCAGGTTGTaGATAAGGTTGGTGAGGGTC | + |
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Preference number: 4 (lower is better) Translates to: TRIRIERLRKSLSESFRAYMPRL*IRLVRV Trigger: GACCCTCACCAACCTTATCCACAACCTGGGCATGTA...CGCGCGGAAGCTTTCTGAGAGGCTCTTCCTTAAGCGTTCAATTCGTATTCTTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| CDS GCA 90 bp | GCTTTGCCTTGGTCTGGAGTCTCGAAGGGCGTCCCTTTCACGGTGTaGAGAAAGATGTACATGCCCAGGTTGTGGATAAGGTTGGTGAGG | + |
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Preference number: 5 (lower is better) Translates to: ALPWSGVSKGVPFTV*RKMYMPRLWIRLVR Trigger: CCTCACCAACCTTATCCACAACCTGGGCATGTACATCTTTCTGCACACCGTGAAAGGGACGCCCTTCGAGACTCCAGACCAAGGCAAAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| CDS-3UTR CAA 90 bp | CCTAGCCCACATCTCAGAGGAGGCGGAGTCTGGCTTCTCCTTCCCAGACCTCTTATCAAGGACACAGTGTaGAGTATGAAATGGACTTGG | + |
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Preference number: 5 (lower is better) Translates to: PSPHLRGGGVWLLLPRPLIKDTV*SMKWTW Trigger: CCAAGTCCATTTCATACTCAACACTGTGTCCTTGAT...AAGAGGTCTGGGAAGGAGAAGCCAGACTCCGCCTCCTCTGAGATGTGGGCTAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| CDS-3UTR CAA 90 bp | ATGCAAGCCACACAAGAGGCACTGCCCCAGCACAATCTACACAAGAATACGAATTTCATCACCCGTGTGTaGGGGTTCACCTCACTGTGT | + |
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Preference number: 5 (lower is better) Translates to: MQATQEALPQHNLHKNTNFITRV*GFTSLC Trigger: ACACAGTGAGGTGAACCCCAACACACGGGTGATGAA...ATTCGTATTCTTGTGTAGATTGTGCTGGGGCAGTGCCTCTTGTGTGGCTTGCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| CDS CCA 72 bp | AGGGAATGCTCAGCAGCACGACATGCAGGAGTCCGATaGCCAGCACGTAGGAGAGCCAGATGCCGCGACTGT | + |
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Preference number: 6 (lower is better) Translates to: RECSAARHAGVR*PARRRARCRDC Trigger: ACAGTCGCGGCATCTGGCTCTCCTACGTGCTGGCCATCGGACTCCTGCATGTCGTGCTGCTGAGCATTCCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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| CDS GCA 72 bp | TGGTCTGGAGTCTCGAAGGGCGTCCCTTTCACGGTGTaGAGAAAGATGTACATGCCCAGGTTGTGGATAAGG | + |
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Preference number: 6 (lower is better) Translates to: WSGVSKGVPFTV*RKMYMPRLWIR Trigger: CCTTATCCACAACCTGGGCATGTACATCTTTCTGCACACCGTGAAAGGGACGCCCTTCGAGACTCCAGACCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052919.8 |
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