Pregenerated sensors for ORMDL2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025353Ensembl transcript IDs: ENSMUST00000026409.5, ENSMUST00000217685.2, ENSMUST00000219215.2, ENSMUST00000219524.2
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGGACTCCAGATTGCAGTGATTCTCCTGCCTCTGCCTCCACTTCCTaGGGGCTAGCTAGTATTATAGGCATGTGCCTCCACTACTCACTT | + |
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Preference number: 1 (lower is better) Translates to: WTPDCSDSPASASTS*GLASIIGMCLHYSL Trigger: AAGTGAGTAGTGGAGGCACATGCCTATAATACTAGCTAGCCCTCAGGAAGTGGAGGCAGAGGCAGGAGAATCACTGCAATCTGGAGTCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026409.5 |
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| 3UTR CCA 90 bp | ATGAAGACTGGACCCAGGAACCCCATTTTCCAGTTTCTTCCTTCTTaGAGTTTAGATAGGTTTATCTTATCTCTCAGGCTTCCAAGATAC | + |
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Preference number: 1 (lower is better) Translates to: MKTGPRNPIFQFLPS*SLDRFILSLRLPRY Trigger: GTATCTTGGAAGCCTGAGAGATAAGATAAACCTATCTAAACTCCAAGAAGGAAGAAACTGGAAAATGGGGTTCCTGGGTCCAGTCTTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000026409.5 ENSMUST00000217685.2 ENSMUST00000219215.2 |
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| 3UTR-3UTR GCA 90 bp | TATCTTATCTCTCAGGCTTCCAAGATACAGAAGATAGTGTGGAGAAGGGAAAACCCTTCCCTCAATGCCTaGAGAACTAGCAAACCATCT | + |
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Preference number: 2 (lower is better) Translates to: YLISQASKIQKIVWRRENPSLNA*RTSKPS Trigger: AGATGGTTTGCTAGTTCTGCAGGCATTGAGGGAAGG...GTTTTCCCTTCTCCACACTATCTTCTGTATCTTGGAAGCCTGAGAGATAAGATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000026409.5 ENSMUST00000217685.2 ENSMUST00000219215.2 ENSMUST00000219524.2 |
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| 3UTR-3UTR GCA 90 bp | AAACATAATCACCAGAAAAGCTGCCCAAACAATGATGGCTTCTTGCTAGATAGACCTTCCCTCAATGCCTaGAGAACTAGCAAACCATCT | + |
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Preference number: 2 (lower is better) Translates to: KHNHQKSCPNNDGFLLDRPSLNA*RTSKPS Trigger: AGATGGTTTGCTAGTTCTGCAGGCATTGAGGGAAGG...TCTATCTAGCAAGAAGCCATCATTGTTTGGGCAGCTTTTCTGGTGATTATGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026409.5 ENSMUST00000217685.2 ENSMUST00000219215.2 |
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| 3UTR-3UTR GCA 90 bp | TTATCTTATCTCTCAGGCTTCCAAGATACAGAAGATAGTGTGGAGAAGGGAAAACCTTCCCTCAATGCCTaGAGAACTAGCAAACCATCT | + |
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Preference number: 2 (lower is better) Translates to: LSYLSGFQDTEDSVEKGKPSLNA*RTSKPS Trigger: AGATGGTTTGCTAGTTCTGCAGGCATTGAGGGAAGG...TTTTCCCTTCTCCACACTATCTTCTGTATCTTGGAAGCCTGAGAGATAAGATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000026409.5 ENSMUST00000217685.2 ENSMUST00000219215.2 ENSMUST00000219524.2 |
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| 3UTR-3UTR CCA 90 bp | GGCAACTTACATCTTCCTTCTCTTCTTTACCCATGTAGCTGGGAGTCCTTTTCTCAGTTTCTTCCTTCTTaGAGTTTAGATAGGTTTATC | + |
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Preference number: 2 (lower is better) Translates to: GNLHLPSLLYPCSWESFSQFLPS*SLDRFI Trigger: GATAAACCTATCTAAACTCCAAGAAGGAAGAAACTG...AGAAAAGGACTCCCAGCTACATGGGTAAAGAAGAGAAGGAAGATGTAAGTTGCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026409.5 |
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| 3UTR TCA 72 bp | GATTGCAGTGATTCTCCTGCCTCTGCCTCCACTTCCTaGGGGCTAGCTAGTATTATAGGCATGTGCCTCCAC | + |
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Preference number: 3 (lower is better) Translates to: DCSDSPASASTS*GLASIIGMCLH Trigger: GTGGAGGCACATGCCTATAATACTAGCTAGCCCTCAGGAAGTGGAGGCAGAGGCAGGAGAATCACTGCAATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026409.5 |
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| 3UTR TCA 72 bp | CCAAACAATGATGGCTTCTTGCTAGATAGAGGAGAGTaGGTGGTAGTGCCCTTAACCTCATCCACCTTTCCT | + |
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Preference number: 3 (lower is better) Translates to: PNNDGFLLDRGE*VVVPLTSSTFP Trigger: AGGAAAGGTGGATGAGGTTAAGGGCACTACCACTCACTCTCCTCTATCTAGCAAGAAGCCATCATTGTTTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026409.5 ENSMUST00000217685.2 ENSMUST00000219215.2 |
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| 3UTR TCA 72 bp | TTATTTGAGAATTCTTTCCTTGCTGTTAGCTGTGAGTaGAAGGTATTGGACCAAAGGAGTAGAGACAAAATT | + |
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Preference number: 3 (lower is better) Translates to: LFENSFLAVSCE*KVLDQRSRDKI Trigger: AATTTTGTCTCTACTCCTTTGGTCCAATACCTTTCACTCACAGCTAACAGCAAGGAAAGAATTCTCAAATAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026409.5 |
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| CDS-3UTR GCA 90 bp | CTTGACCCTATGAAGACTGGACCCAGGAACCCCATTTTCCAGTTTCTTCCTTCTTGTAGGCCAGCCAGATaGCCCGACTGTTCATCACTC | + |
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Preference number: 4 (lower is better) Translates to: LDPMKTGPRNPIFQFLPSCRPAR*PDCSSL Trigger: GAGTGATGAACAGTCGGGGCATCTGGCTGGCCTACA...AGAAGGAAGAAACTGGAAAATGGGGTTCCTGGGTCCAGTCTTCATAGGGTCAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026409.5 ENSMUST00000219215.2 |
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| CDS-3UTR GCA 90 bp | GAGAATCTTGACCCTATGAAGACTGGACCCAGGAACCCCATTTTCCAGTTTCTTTGTAGGCCAGCCAGATaGCCCGACTGTTCATCACTC | + |
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Preference number: 4 (lower is better) Translates to: ENLDPMKTGPRNPIFQFLCRPAR*PDCSSL Trigger: GAGTGATGAACAGTCGGGGCATCTGGCTGGCCTACA...AAGAAACTGGAAAATGGGGTTCCTGGGTCCAGTCTTCATAGGGTCAAGATTCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026409.5 ENSMUST00000219215.2 |
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| CDS-3UTR TCA 90 bp | CTTGACCCTATGAAGACTGGACCCAGGAACCCCATTTTCCAGTTTCTTCCTTCTTTGCCAAGTTATGGATaGCGTTGGTCAGGGTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: LDPMKTGPRNPIFQFLPSLPSYG*RWSGSR Trigger: TCTGGACCCTGACCAACGTCATCCATAACTTGGCAA...AGAAGGAAGAAACTGGAAAATGGGGTTCCTGGGTCCAGTCTTCATAGGGTCAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026409.5 ENSMUST00000219215.2 |
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| CDS-3UTR CCA 90 bp | GAGAATCTTGACCCTATGAAGACTGGACCCAGGAACCCCATTTTCCAGTTTCTTAAGAGACGAACCCCATaGAACTGGGGTAGCTTAGGC | + |
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Preference number: 4 (lower is better) Translates to: ENLDPMKTGPRNPIFQFLKRRTP*NWGSLG Trigger: GCCTAAGCTACCCCAGTTCCATGGGGTTCGTCTCTT...AAGAAACTGGAAAATGGGGTTCCTGGGTCCAGTCTTCATAGGGTCAAGATTCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENSMUST00000026409.5 ENSMUST00000217685.2 ENSMUST00000219215.2 |
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| CDS-3UTR GCA 90 bp | GAGAATCTTGACCCTATGAAGACTGGACCCAGGAACCCCATTTTCCAGTTTCTTCTGAGGAGAACCACATaGAGCAGTCCTACCAAGATG | + |
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Preference number: 4 (lower is better) Translates to: ENLDPMKTGPRNPIFQFLLRRTT*SSPTKM Trigger: CATCTTGGTAGGACTGCTGCATGTGGTTCTCCTCAG...AAGAAACTGGAAAATGGGGTTCCTGGGTCCAGTCTTCATAGGGTCAAGATTCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026409.5 ENSMUST00000219215.2 |
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| CDS-3UTR GCA 90 bp | TATCTTATCTCTCAGGCTTCCAAGATACAGAAGATAGTGTGGAGAAGGGAAAACTGTAGGCCAGCCAGATaGCCCGACTGTTCATCACTC | + |
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Preference number: 4 (lower is better) Translates to: YLISQASKIQKIVWRRENCRPAR*PDCSSL Trigger: GAGTGATGAACAGTCGGGGCATCTGGCTGGCCTACA...GTTTTCCCTTCTCCACACTATCTTCTGTATCTTGGAAGCCTGAGAGATAAGATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026409.5 ENSMUST00000219215.2 ENSMUST00000219524.2 |
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| CDS-3UTR CCA 90 bp | CATTATATATTAGTTCCAGTGCCTTCCCTCAATGCCTGCAGAACTAGCAAACCAAAGAGACGAACCCCATaGAACTGGGGTAGCTTAGGC | + |
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Preference number: 4 (lower is better) Translates to: HYILVPVPSLNACRTSKPKRRTP*NWGSLG Trigger: GCCTAAGCTACCCCAGTTCCATGGGGTTCGTCTCTT...TGGTTTGCTAGTTCTGCAGGCATTGAGGGAAGGCACTGGAACTAATATATAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000026409.5 ENSMUST00000217685.2 ENSMUST00000219215.2 ENSMUST00000219524.2 |
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| CDS-3UTR TCA 90 bp | CATTATATATTAGTTCCAGTGCCTTCCCTCAATGCCTGCAGAACTAGCAAACCATTGCCAAGTTATGGATaGCGTTGGTCAGGGTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: HYILVPVPSLNACRTSKPLPSYG*RWSGSR Trigger: TCTGGACCCTGACCAACGTCATCCATAACTTGGCAA...TGGTTTGCTAGTTCTGCAGGCATTGAGGGAAGGCACTGGAACTAATATATAATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026409.5 ENSMUST00000219215.2 ENSMUST00000219524.2 |
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| CDS-3UTR GCA 90 bp | AAGGGAAAACATTATATATTAGTTCCAGTGCCTTCCCTCAATGCCTGCAGAACTCTGAGGAGAACCACATaGAGCAGTCCTACCAAGATG | + |
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Preference number: 4 (lower is better) Translates to: KGKHYILVPVPSLNACRTLRRTT*SSPTKM Trigger: CATCTTGGTAGGACTGCTGCATGTGGTTCTCCTCAG...AGTTCTGCAGGCATTGAGGGAAGGCACTGGAACTAATATATAATGTTTTCCCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026409.5 ENSMUST00000219215.2 ENSMUST00000219524.2 |
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| CDS-3UTR CCA 90 bp | CTTCCTTCTTGGAGTTTAGATAGGTTTATCTTATCTCTCAGGCTTCCAAGATACAAGAGACGAACCCCATaGAACTGGGGTAGCTTAGGC | + |
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Preference number: 4 (lower is better) Translates to: LPSWSLDRFILSLRLPRYKRRTP*NWGSLG Trigger: GCCTAAGCTACCCCAGTTCCATGGGGTTCGTCTCTT...GTATCTTGGAAGCCTGAGAGATAAGATAAACCTATCTAAACTCCAAGAAGGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000026409.5 ENSMUST00000217685.2 ENSMUST00000219215.2 ENSMUST00000219524.2 |
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| CDS-3UTR CCA 90 bp | CCTTCTTGGAGTTTAGATAGGTTTATCTTATCTCTCAGGCTTCCAAGATACAGAAAGAGACGAACCCCATaGAACTGGGGTAGCTTAGGC | + |
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Preference number: 4 (lower is better) Translates to: PSWSLDRFILSLRLPRYRKRRTP*NWGSLG Trigger: GCCTAAGCTACCCCAGTTCCATGGGGTTCGTCTCTT...TCTGTATCTTGGAAGCCTGAGAGATAAGATAAACCTATCTAAACTCCAAGAAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000026409.5 ENSMUST00000217685.2 ENSMUST00000219215.2 ENSMUST00000219524.2 |
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| CDS-3UTR TCA 90 bp | TTATCTTATCTCTCAGGCTTCCAAGATACAGAAGATAGTGTGGAGAAGGGAAAATTGCCAAGTTATGGATaGCGTTGGTCAGGGTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: LSYLSGFQDTEDSVEKGKLPSYG*RWSGSR Trigger: TCTGGACCCTGACCAACGTCATCCATAACTTGGCAA...TTTTCCCTTCTCCACACTATCTTCTGTATCTTGGAAGCCTGAGAGATAAGATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026409.5 ENSMUST00000219215.2 ENSMUST00000219524.2 |
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| CDS-3UTR TCA 90 bp | ATAGGTTTATCTTATCTCTCAGGCTTCCAAGATACAGAAGATAGTGTGGAGAAGGTGTTGATGAGGAAGTaGGCAGCATCGTACTTGGTG | + |
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Preference number: 4 (lower is better) Translates to: IGLSYLSGFQDTEDSVEKVLMRK*AASYLV Trigger: CACCAAGTACGATGCTGCTCACTTCCTCATCAACAC...CTTCTCCACACTATCTTCTGTATCTTGGAAGCCTGAGAGATAAGATAAACCTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000026409.5 ENSMUST00000217685.2 ENSMUST00000219215.2 ENSMUST00000219524.2 |
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| CDS-3UTR TCA 90 bp | CTTCCTTCTTGGAGTTTAGATAGGTTTATCTTATCTCTCAGGCTTCCAAGATACGTGTTGATGAGGAAGTaGGCAGCATCGTACTTGGTG | + |
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Preference number: 4 (lower is better) Translates to: LPSWSLDRFILSLRLPRYVLMRK*AASYLV Trigger: CACCAAGTACGATGCTGCTCACTTCCTCATCAACAC...GTATCTTGGAAGCCTGAGAGATAAGATAAACCTATCTAAACTCCAAGAAGGAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000026409.5 ENSMUST00000217685.2 ENSMUST00000219215.2 ENSMUST00000219524.2 |
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| CDS-3UTR CCA 90 bp | CATTATATATTAGTTCCAGTGCCTTCCCTCAATGCCTGCAGAACTAGCAAACCATACATTGCCAAGTTATaGATGACGTTGGTCAGGGTC | + |
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Preference number: 4 (lower is better) Translates to: HYILVPVPSLNACRTSKPYIAKL*MTLVRV Trigger: GACCCTGACCAACGTCATCCATAACTTGGCAATGTA...TGGTTTGCTAGTTCTGCAGGCATTGAGGGAAGGCACTGGAACTAATATATAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026409.5 ENSMUST00000219215.2 ENSMUST00000219524.2 |
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| CDS-3UTR CCA 90 bp | AAACATTATATATTAGTTCCAGTGCCTTCCCTCAATGCCTGCAGAACTAGCAAATCATCACTCGAGTGTTaGGGTTTACTTCGCTGTGTG | + |
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Preference number: 4 (lower is better) Translates to: KHYILVPVPSLNACRTSKSSLEC*GLLRCV Trigger: CACACAGCGAAGTAAACCCCAACACTCGAGTGATGA...TTTGCTAGTTCTGCAGGCATTGAGGGAAGGCACTGGAACTAATATATAATGTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026409.5 ENSMUST00000219215.2 ENSMUST00000219524.2 |
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| CDS-3UTR CCA 90 bp | AAACATAATCACCAGAAAAGCTGCCCAAACAATGATGGCTTCTTGCTAGATAGATCATCACTCGAGTGTTaGGGTTTACTTCGCTGTGTG | + |
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Preference number: 4 (lower is better) Translates to: KHNHQKSCPNNDGFLLDRSSLEC*GLLRCV Trigger: CACACAGCGAAGTAAACCCCAACACTCGAGTGATGA...TCTATCTAGCAAGAAGCCATCATTGTTTGGGCAGCTTTTCTGGTGATTATGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026409.5 ENSMUST00000219215.2 |
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| CDS-3UTR CCA 90 bp | CTTCCTTCTTGGAGTTTAGATAGGTTTATCTTATCTCTCAGGCTTCCAAGATACTCATCACTCGAGTGTTaGGGTTTACTTCGCTGTGTG | + |
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Preference number: 4 (lower is better) Translates to: LPSWSLDRFILSLRLPRYSSLEC*GLLRCV Trigger: CACACAGCGAAGTAAACCCCAACACTCGAGTGATGA...GTATCTTGGAAGCCTGAGAGATAAGATAAACCTATCTAAACTCCAAGAAGGAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026409.5 ENSMUST00000219215.2 ENSMUST00000219524.2 |
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| CDS-3UTR CCA 90 bp | TATCTTATCTCTCAGGCTTCCAAGATACAGAAGATAGTGTGGAGAAGGGAAAACACTTGGTGTAGAAGCTaGCCAGGAGGTAAAGTACAA | + |
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Preference number: 4 (lower is better) Translates to: YLISQASKIQKIVWRRENTWCRS*PGGKVQ Trigger: TTGTACTTTACCTCCTGGCCAGCTTCTACACCAAGT...GTTTTCCCTTCTCCACACTATCTTCTGTATCTTGGAAGCCTGAGAGATAAGATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000026409.5 ENSMUST00000217685.2 ENSMUST00000219215.2 ENSMUST00000219524.2 |
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| CDS-3UTR CCA 90 bp | TTATCTTATCTCTCAGGCTTCCAAGATACAGAAGATAGTGTGGAGAAGGGAAAATACATTGCCAAGTTATaGATGACGTTGGTCAGGGTC | + |
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Preference number: 4 (lower is better) Translates to: LSYLSGFQDTEDSVEKGKYIAKL*MTLVRV Trigger: GACCCTGACCAACGTCATCCATAACTTGGCAATGTA...TTTTCCCTTCTCCACACTATCTTCTGTATCTTGGAAGCCTGAGAGATAAGATAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026409.5 ENSMUST00000219215.2 ENSMUST00000219524.2 |
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| CDS-3UTR CCA 90 bp | AAACATTATATATTAGTTCCAGTGCCTTCCCTCAATGCCTGCAGAACTAGCAAAACTTGGTGTAGAAGCTaGCCAGGAGGTAAAGTACAA | + |
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Preference number: 4 (lower is better) Translates to: KHYILVPVPSLNACRTSKTWCRS*PGGKVQ Trigger: TTGTACTTTACCTCCTGGCCAGCTTCTACACCAAGT...TTTGCTAGTTCTGCAGGCATTGAGGGAAGGCACTGGAACTAATATATAATGTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000026409.5 ENSMUST00000217685.2 ENSMUST00000219215.2 ENSMUST00000219524.2 |
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| CDS-3UTR CCA 90 bp | TTATCTTATCTCTCAGGCTTCCAAGATACAGAAGATAGTGTGGAGAAGGGAAAAACTTGGTGTAGAAGCTaGCCAGGAGGTAAAGTACAA | + |
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Preference number: 4 (lower is better) Translates to: LSYLSGFQDTEDSVEKGKTWCRS*PGGKVQ Trigger: TTGTACTTTACCTCCTGGCCAGCTTCTACACCAAGT...TTTTCCCTTCTCCACACTATCTTCTGTATCTTGGAAGCCTGAGAGATAAGATAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000026409.5 ENSMUST00000217685.2 ENSMUST00000219215.2 ENSMUST00000219524.2 |
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| CDS-3UTR CCA 90 bp | TCTCAGGCTTCCAAGATACAGAAGATAGTGTGGAGAAGGGAAAACATTATATATACTTGGTGTAGAAGCTaGCCAGGAGGTAAAGTACAA | + |
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Preference number: 4 (lower is better) Translates to: SQASKIQKIVWRRENIIYTWCRS*PGGKVQ Trigger: TTGTACTTTACCTCCTGGCCAGCTTCTACACCAAGT...ATATATAATGTTTTCCCTTCTCCACACTATCTTCTGTATCTTGGAAGCCTGAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000026409.5 ENSMUST00000217685.2 ENSMUST00000219215.2 ENSMUST00000219524.2 |
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| CDS-3UTR CAA 90 bp | TCTCCCCAGCATTATGAGAAAATCTCTCTGTCCTTGCTTATCAAATTTCAGCCATTCATCACTCGAGTGTaGGGGTTTACTTCGCTGTGT | + |
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Preference number: 5 (lower is better) Translates to: SPQHYEKISLSLLIKFQPFITRV*GFTSLC Trigger: ACACAGCGAAGTAAACCCCAACACTCGAGTGATGAA...TGGCTGAAATTTGATAAGCAAGGACAGAGAGATTTTCTCATAATGCTGGGGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000026409.5 |
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| CDS-3UTR CAA 90 bp | AAACATTATATATTAGTTCCAGTGCCTTCCCTCAATGCCTGCAGAACTAGCAAATTCATCACTCGAGTGTaGGGGTTTACTTCGCTGTGT | + |
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Preference number: 5 (lower is better) Translates to: KHYILVPVPSLNACRTSKFITRV*GFTSLC Trigger: ACACAGCGAAGTAAACCCCAACACTCGAGTGATGAA...TTTGCTAGTTCTGCAGGCATTGAGGGAAGGCACTGGAACTAATATATAATGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026409.5 ENSMUST00000219215.2 ENSMUST00000219524.2 |
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| CDS-3UTR CAA 90 bp | CCTTCTTGGAGTTTAGATAGGTTTATCTTATCTCTCAGGCTTCCAAGATACAGATTCATCACTCGAGTGTaGGGGTTTACTTCGCTGTGT | + |
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Preference number: 5 (lower is better) Translates to: PSWSLDRFILSLRLPRYRFITRV*GFTSLC Trigger: ACACAGCGAAGTAAACCCCAACACTCGAGTGATGAA...TCTGTATCTTGGAAGCCTGAGAGATAAGATAAACCTATCTAAACTCCAAGAAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026409.5 ENSMUST00000219215.2 ENSMUST00000219524.2 |
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