Pregenerated sensors for ORMDL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026097Ensembl transcript IDs: ENSMUST00000027266.4
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGCTACTCAAGACCTGAAGTGCTTGAAGTAAGTTATTCTCTTAATTaGTTTGGCAGCTTTGCTTCTGGAAAAGCAGTAAAACCTACTTTG | + |
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Preference number: 1 (lower is better) Translates to: SYSRPEVLEVSYSLN*FGSFASGKAVKPTL Trigger: CAAAGTAGGTTTTACTGCTTTTCCAGAAGCAAAGCTGCCAAACCAATTAAGAGAATAACTTACTTCAAGCACTTCAGGTCTTGAGTAGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027266.4 |
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| 3UTR GCA 90 bp | AACTATAGGAAGCTTCCCCAAGTCACAAGAATTCAATATAGTTGTTaGTGTGAATATAGGTACCATTTTGGGTCATCTACACTAAGACTG | + |
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Preference number: 1 (lower is better) Translates to: NYRKLPQVTRIQYSC*CEYRYHFGSSTLRL Trigger: CAGTCTTAGTGTAGATGACCCAAAATGGTACCTATATTCACAGCAACAACTATATTGAATTCTTGTGACTTGGGGAAGCTTCCTATAGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027266.4 |
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| 3UTR GCA 90 bp | CTTTTGAGATATGAAACAATGATCACTACCCTTAACTCTGTGTATTaGCACAATCGATTTGTAAGTTGGTTGACAACTGTCTTCACTCTT | + |
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Preference number: 1 (lower is better) Translates to: LLRYETMITTLNSVY*HNRFVSWLTTVFTL Trigger: AAGAGTGAAGACAGTTGTCAACCAACTTACAAATCGATTGTGGCAATACACAGAGTTAAGGGTAGTGATCATTGTTTCATATCTCAAAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027266.4 |
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| 3UTR-3UTR GCA 90 bp | ATGCTAGCAACTATAGGAAGCTTCCCCAAGTCACAAGAATTCAATATAGTTGTTCAGCCGGCCCCATCTTaGATTTCCTTTTTAGAAGAA | + |
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Preference number: 2 (lower is better) Translates to: MLATIGSFPKSQEFNIVVQPAPS*ISFLEE Trigger: TTCTTCTAAAAAGGAAATGCAAGATGGGGCCGGCTG...AACAACTATATTGAATTCTTGTGACTTGGGGAAGCTTCCTATAGTTGCTAGCAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027266.4 |
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| 3UTR-3UTR CAA 90 bp | CTCTTATCCTACTACCATCAAGTTATAAGCTGGGCCTGCCCAGCCTGCCTGCAAGTGAAGGAGCAGTACTaGGCCCTCCAATGTAAATAC | + |
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Preference number: 3 (lower is better) Translates to: LLSYYHQVISWACPACLQVKEQY*ALQCKY Trigger: GTATTTACATTGGAGGGCCAAGTACTGCTCCTTCAC...TTGCAGGCAGGCTGGGCAGGCCCAGCTTATAACTTGATGGTAGTAGGATAAGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027266.4 |
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| 3UTR TCA 72 bp | GAGGCATCCTTAAGTAGAGCACTTCAAGACAGCTTGTaGAGGAGCAGTACTTGGCCCTCCAATGTAAATACC | + |
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Preference number: 3 (lower is better) Translates to: EASLSRALQDSL*RSSTWPSNVNT Trigger: GGTATTTACATTGGAGGGCCAAGTACTGCTCCTTCACAAGCTGTCTTGAAGTGCTCTACTTAAGGATGCCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027266.4 |
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| 3UTR TCA 72 bp | CTTTCTAGAAGTCTGCTTCAACCGGCTATGAACGAATaGTTGGAATGCTCTTTCCCTAACATAATGCTCGCT | + |
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Preference number: 3 (lower is better) Translates to: LSRSLLQPAMNE*LECSFPNIMLA Trigger: AGCGAGCATTATGTTAGGGAAAGAGCATTCCAATCATTCGTTCATAGCCGGTTGAAGCAGACTTCTAGAAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027266.4 |
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| 3UTR GCA 72 bp | GACATATATCAGGTGTATGTCATACAAAGCAGACTGTaGACAGTAATAAAAACATGTACACAGGAGGTTCTG | + |
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Preference number: 3 (lower is better) Translates to: DIYQVYVIQSRL*TVIKTCTQEVL Trigger: CAGAACCTCCTGTGTACATGTTTTTATTACTGTGCACAGTCTGCTTTGTATGACATACACCTGATATATGTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027266.4 |
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| 3UTR-3UTR CAA 90 bp | ATGCTAGCAACTATAGGAAGCTTCCCCAAGTCACAAGAATTCAATATAGTTGTTGCAGTAAAACCTACTTaGTTCCAAAATGAGCACGTT | + |
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Preference number: 3 (lower is better) Translates to: MLATIGSFPKSQEFNIVVAVKPT*FQNEHV Trigger: AACGTGCTCATTTTGGAACAAAGTAGGTTTTACTGC...AACAACTATATTGAATTCTTGTGACTTGGGGAAGCTTCCTATAGTTGCTAGCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027266.4 |
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| 3UTR-3UTR CAA 90 bp | ATGCTAGCAACTATAGGAAGCTTCCCCAAGTCACAAGAATTCAATATAGTTGTTATTCTCTTAATTGGTTaGGCAGCTTTGCTTCTGGAA | + |
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Preference number: 3 (lower is better) Translates to: MLATIGSFPKSQEFNIVVILLIG*AALLLE Trigger: TTCCAGAAGCAAAGCTGCCAAACCAATTAAGAGAAT...AACAACTATATTGAATTCTTGTGACTTGGGGAAGCTTCCTATAGTTGCTAGCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027266.4 |
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| 3UTR GCA 72 bp | AAGCTTCCCCAAGTCACAAGAATTCAATATAGTTGTTaGTGTGAATATAGGTACCATTTTGGGTCATCTACA | + |
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Preference number: 3 (lower is better) Translates to: KLPQVTRIQYSC*CEYRYHFGSST Trigger: TGTAGATGACCCAAAATGGTACCTATATTCACAGCAACAACTATATTGAATTCTTGTGACTTGGGGAAGCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027266.4 |
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| 3UTR CCA 72 bp | AGACCTGAAGTGCTTGAAGTAAGTTATTCTCTTAATTaGTTTGGCAGCTTTGCTTCTGGAAAAGCAGTAAAA | + |
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Preference number: 3 (lower is better) Translates to: RPEVLEVSYSLN*FGSFASGKAVK Trigger: TTTTACTGCTTTTCCAGAAGCAAAGCTGCCAAACCAATTAAGAGAATAACTTACTTCAAGCACTTCAGGTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027266.4 |
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| CDS-3UTR TCA 90 bp | TGTACTCTTATCCTACTACCATCAAGTTATAAGCTGGGCCTGCCCAGCCTGCCTTCCAGCTGTTCCCAGTaGGTTAGGAGCCTTGCTCTA | + |
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Preference number: 4 (lower is better) Translates to: CTLILLPSSYKLGLPSLPSSCSQ*VRSLAL Trigger: TAGAGCAAGGCTCCTAACTCACTGGGAACAGCTGGA...AGGCAGGCTGGGCAGGCCCAGCTTATAACTTGATGGTAGTAGGATAAGAGTACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027266.4 |
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| CDS-3UTR TCA 90 bp | CAGCCTGCCTGCAAAGCCTCTCTCAGAAATATACCAAGCAAACTAGACAGAGGCCTGAGTAATACAATATaGAGCAGGCCAACTCCCAAC | + |
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Preference number: 4 (lower is better) Translates to: QPACKASLRNIPSKLDRGLSNTI*SRPTPN Trigger: GTTGGGAGTTGGCCTGCTTCATATTGTATTACTCAG...GCCTCTGTCTAGTTTGCTTGGTATATTTCTGAGAGAGGCTTTGCAGGCAGGCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027266.4 |
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| CDS-3UTR TCA 90 bp | CTCTTATCCTACTACCATCAAGTTATAAGCTGGGCCTGCCCAGCCTGCCTGCAATGCAGAAGGGGATGCTaGGTAATACAATATGAAGCA | + |
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Preference number: 4 (lower is better) Translates to: LLSYYHQVISWACPACLQCRRGC*VIQYEA Trigger: TGCTTCATATTGTATTACTCAGCATCCCCTTCTGCA...TTGCAGGCAGGCTGGGCAGGCCCAGCTTATAACTTGATGGTAGTAGGATAAGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027266.4 |
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| CDS-3UTR TCA 90 bp | TGTACTCTTATCCTACTACCATCAAGTTATAAGCTGGGCCTGCCCAGCCTGCCTGTGTTTAGGATGAAGTaGGTCGGGTCATACTTTGTA | + |
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Preference number: 4 (lower is better) Translates to: CTLILLPSSYKLGLPSLPVFRMK*VGSYFV Trigger: TACAAAGTATGACCCGACTCACTTCATCCTAAACAC...AGGCAGGCTGGGCAGGCCCAGCTTATAACTTGATGGTAGTAGGATAAGAGTACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027266.4 |
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| CDS-3UTR GCA 90 bp | CAGCCTGCCTGCAAAGCCTCTCTCAGAAATATACCAAGCAAACTAGACAGAGGCGTTCCTTTTACTGCATaGAAAAACACATACATCCCC | + |
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Preference number: 4 (lower is better) Translates to: QPACKASLRNIPSKLDRGVPFTA*KNTYIP Trigger: GGGGATGTATGTGTTTTTGCATGCAGTAAAAGGAAC...GCCTCTGTCTAGTTTGCTTGGTATATTTCTGAGAGAGGCTTTGCAGGCAGGCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027266.4 |
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| CDS-3UTR CCA 90 bp | CTCTTATCCTACTACCATCAAGTTATAAGCTGGGCCTGCCCAGCCTGCCTGCAAGATTATGTATTATGTTaGTTAAGGTCCAGGCAACAG | + |
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Preference number: 4 (lower is better) Translates to: LLSYYHQVISWACPACLQDYVLC*LRSRQQ Trigger: CTGTTGCCTGGACCTTAACCAACATAATACATAATC...TTGCAGGCAGGCTGGGCAGGCCCAGCTTATAACTTGATGGTAGTAGGATAAGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027266.4 |
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| CDS-3UTR GCA 90 bp | ATGCTAGCAACTATAGGAAGCTTCCCCAAGTCACAAGAATTCAATATAGTTGTTAGGCGTTCCTTTTACTaGATGCAAAAACACATACAT | + |
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Preference number: 4 (lower is better) Translates to: MLATIGSFPKSQEFNIVVRRSFY*MQKHIH Trigger: ATGTATGTGTTTTTGCATGCAGTAAAAGGAACGCCT...AACAACTATATTGAATTCTTGTGACTTGGGGAAGCTTCCTATAGTTGCTAGCAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027266.4 |
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| CDS-3UTR CAA 90 bp | CAGCCTGCCTGCAAAGCCTCTCTCAGAAATATACCAAGCAAACTAGACAGAGGCAGTGAGTTAGGAGCCTaGCTCTACCCTGATCCGGAG | + |
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Preference number: 5 (lower is better) Translates to: QPACKASLRNIPSKLDRGSELGA*LYPDPE Trigger: CTCCGGATCAGGGTAGAGCAAGGCTCCTAACTCACT...GCCTCTGTCTAGTTTGCTTGGTATATTTCTGAGAGAGGCTTTGCAGGCAGGCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027266.4 |
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| CDS-3UTR CAA 90 bp | CTCTTATCCTACTACCATCAAGTTATAAGCTGGGCCTGCCCAGCCTGCCTGCAAGAGTCGGGTCATACTTaGTATAGAAACTTGCCAGAA | + |
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Preference number: 5 (lower is better) Translates to: LLSYYHQVISWACPACLQESGHT*YRNLPE Trigger: TTCTGGCAAGTTTCTATACAAAGTATGACCCGACTC...TTGCAGGCAGGCTGGGCAGGCCCAGCTTATAACTTGATGGTAGTAGGATAAGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027266.4 |
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| CDS-3UTR CAA 90 bp | CTCTTATCCTACTACCATCAAGTTATAAGCTGGGCCTGCCCAGCCTGCCTGCAAAGATTATGTATTATGTaGGTTAAGGTCCAGGCAACA | + |
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Preference number: 5 (lower is better) Translates to: LLSYYHQVISWACPACLQRLCIM*VKVQAT Trigger: TGTTGCCTGGACCTTAACCAACATAATACATAATCT...TTGCAGGCAGGCTGGGCAGGCCCAGCTTATAACTTGATGGTAGTAGGATAAGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027266.4 |
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| CDS-3UTR CAA 90 bp | ATGCTAGCAACTATAGGAAGCTTCCCCAAGTCACAAGAATTCAATATAGTTGTTTGCAGCTGTGGCATTTaGGGAATAAGTACACTCAGC | + |
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Preference number: 5 (lower is better) Translates to: MLATIGSFPKSQEFNIVVCSCGI*GISTLS Trigger: GCTGAGTGTACTTATTCCCAAAATGCCACAGCTGCA...AACAACTATATTGAATTCTTGTGACTTGGGGAAGCTTCCTATAGTTGCTAGCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027266.4 |
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| CDS CAA 72 bp | ATTCCAAAGATGCGAACACCATGCAGCTGTGGCATTTaGGGAATAAGTACACTCAGCAGAGAAGCTGTGTTT | + |
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Preference number: 6 (lower is better) Translates to: IPKMRTPCSCGI*GISTLSREAVF Trigger: AAACACAGCTTCTCTGCTGAGTGTACTTATTCCCAAAATGCCACAGCTGCATGGTGTTCGCATCTTTGGAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027266.4 |
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