Pregenerated sensors for ORM3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028359Ensembl transcript IDs: ENSMUST00000006687.5
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAGCAAACCTTTATTGTTACAGAGACAGAATCAAAGTGCACAGGATaGGGTAGGGTGTGGTGCACATGGGGACAGCCCAAGGAGACCAGA | + |
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Preference number: 1 (lower is better) Translates to: QQTFIVTETESKCTG*GRVWCTWGQPKETR Trigger: TCTGGTCTCCTTGGGCTGTCCCCATGTGCACCACACCCTACCCCATCCTGTGCACTTTGATTCTGTCTCTGTAACAATAAAGGTTTGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006687.5 |
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| 3UTR-3UTR CCA 90 bp | GATATTGACAGTGTCAGCAAACCTTTATTGTTACAGAGACAGAATCAAAGTGCAAGGGTGTGGTGCACATaGGGACAGCCCAAGGAGACC | + |
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Preference number: 2 (lower is better) Translates to: DIDSVSKPLLLQRQNQSARVWCT*GQPKET Trigger: GGTCTCCTTGGGCTGTCCCCATGTGCACCACACCCT...TGCACTTTGATTCTGTCTCTGTAACAATAAAGGTTTGCTGACACTGTCAATATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006687.5 |
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| 3UTR GCA 72 bp | ACAGAATCAAAGTGCACAGGATGGGGTAGGGTGTGGTaGACATGGGGACAGCCCAAGGAGACCAGAGAGCTG | + |
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Preference number: 3 (lower is better) Translates to: TESKCTGWGRVW*TWGQPKETREL Trigger: CAGCTCTCTGGTCTCCTTGGGCTGTCCCCATGTGCACCACACCCTACCCCATCCTGTGCACTTTGATTCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006687.5 |
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| 3UTR CCA 72 bp | GAGACAGAATCAAAGTGCACAGGATGGGGTAGGGTGTaGTGCACATGGGGACAGCCCAAGGAGACCAGAGAG | + |
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Preference number: 3 (lower is better) Translates to: ETESKCTGWGRV*CTWGQPKETRE Trigger: CTCTCTGGTCTCCTTGGGCTGTCCCCATGTGCACCACACCCTACCCCATCCTGTGCACTTTGATTCTGTCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006687.5 |
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| 3UTR CCA 72 bp | TTTATTGTTACAGAGACAGAATCAAAGTGCACAGGATaGGGTAGGGTGTGGTGCACATGGGGACAGCCCAAG | + |
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Preference number: 3 (lower is better) Translates to: FIVTETESKCTG*GRVWCTWGQPK Trigger: CTTGGGCTGTCCCCATGTGCACCACACCCTACCCCATCCTGTGCACTTTGATTCTGTCTCTGTAACAATAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006687.5 |
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| CDS-3UTR TCA 90 bp | CAGGATGGGGTAGGGTGTGGTGCACATGGGGACAGCCCAAGGAGACCAGAGAGCCCTATAATCAGGGTCTaGGTCAGCCACAGCAATGAG | + |
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Preference number: 4 (lower is better) Translates to: QDGVGCGAHGDSPRRPESPIIRV*VSHSNE Trigger: CTCATTGCTGTGGCTGACTCAGACCCTGATTATAGG...GCTCTCTGGTCTCCTTGGGCTGTCCCCATGTGCACCACACCCTACCCCATCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006687.5 |
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| CDS-3UTR TCA 90 bp | GCACAGGATGGGGTAGGGTGTGGTGCACATGGGGACAGCCCAAGGAGACCAGAGCCATGCCCACGTGTGTaGCAGCCTTCTGAAATACTT | + |
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Preference number: 4 (lower is better) Translates to: AQDGVGCGAHGDSPRRPEPCPRV*QPSEIL Trigger: AAGTATTTCAGAAGGCTGTCACACACGTGGGCATGG...CTCTGGTCTCCTTGGGCTGTCCCCATGTGCACCACACCCTACCCCATCCTGTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006687.5 |
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| CDS-3UTR TCA 90 bp | GGATGGGGTAGGGTGTGGTGCACATGGGGACAGCCCAAGGAGACCAGAGAGCTGTGGTCATCTTTGGTGTaGTACTCTCGAAGCTCCATC | + |
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Preference number: 4 (lower is better) Translates to: GWGRVWCTWGQPKETRELWSSLV*YSRSSI Trigger: GATGGAGCTTCGAGAGTATCACACCAAAGATGACCA...CAGCTCTCTGGTCTCCTTGGGCTGTCCCCATGTGCACCACACCCTACCCCATCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006687.5 |
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| CDS-3UTR CCA 90 bp | CAGAATCAAAGTGCACAGGATGGGGTAGGGTGTGGTGCACATGGGGACAGCCCACTGAGCTTCCAACAGTaGCAGGAGGCTCAACATGAT | + |
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Preference number: 4 (lower is better) Translates to: QNQSAQDGVGCGAHGDSPLSFQQ*QEAQHD Trigger: ATCATGTTGAGCCTCCTGCCACTGTTGGAAGCTCAG...TGGGCTGTCCCCATGTGCACCACACCCTACCCCATCCTGTGCACTTTGATTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006687.5 |
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| CDS-3UTR TCA 90 bp | ATTGTTACAGAGACAGAATCAAAGTGCACAGGATGGGGTAGGGTGTGGTGCACATGTGTGACAGCCTTCTaGAATACTTCCCGCAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: IVTETESKCTGWGRVWCTCVTAF*NTSRSS Trigger: GGAGCTGCGGGAAGTATTTCAGAAGGCTGTCACACA...TGTGCACCACACCCTACCCCATCCTGTGCACTTTGATTCTGTCTCTGTAACAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006687.5 |
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| CDS-3UTR CCA 90 bp | CCTTTATTGTTACAGAGACAGAATCAAAGTGCACAGGATGGGGTAGGGTGTGGTGTTGATGGCATGCTCTaGGTTCTGAGCTTCCAACAG | + |
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Preference number: 4 (lower is better) Translates to: PLLLQRQNQSAQDGVGCGVDGML*VLSFQQ Trigger: CTGTTGGAAGCTCAGAACCCAGAGCATGCCATCAAC...ACCACACCCTACCCCATCCTGTGCACTTTGATTCTGTCTCTGTAACAATAAAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006687.5 |
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| CDS-3UTR CCA 90 bp | GTGTCAGCAAACCTTTATTGTTACAGAGACAGAATCAAAGTGCACAGGATGGGGGTCCCATTCTCTCTCTaGAATCCCAGAAGGTTGGAG | + |
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Preference number: 4 (lower is better) Translates to: VSANLYCYRDRIKVHRMGVPFSL*NPRRLE Trigger: CTCCAACCTTCTGGGATTCCAGAGAGAGAATGGGAC...CCCCATCCTGTGCACTTTGATTCTGTCTCTGTAACAATAAAGGTTTGCTGACAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006687.5 |
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| CDS-3UTR TCA 90 bp | TTATTGTTACAGAGACAGAATCAAAGTGCACAGGATGGGGTAGGGTGTGGTGCAGGTCAAAGAAAAGCATaGTGGCCCCATGTTTCTCTA | + |
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Preference number: 4 (lower is better) Translates to: LLLQRQNQSAQDGVGCGAGQRKA*WPHVSL Trigger: TAGAGAAACATGGGGCCATCATGCTTTTCTTTGACC...TGCACCACACCCTACCCCATCCTGTGCACTTTGATTCTGTCTCTGTAACAATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000006687.5 |
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| CDS-3UTR CCA 90 bp | TTATTGTTACAGAGACAGAATCAAAGTGCACAGGATGGGGTAGGGTGTGGTGCACCTCAGGATCTTTCTTaGTCTCCTTCTCCAACTCAA | + |
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Preference number: 4 (lower is better) Translates to: LLLQRQNQSAQDGVGCGAPQDLS*SPSPTQ Trigger: TTGAGTTGGAGAAGGAGACCAAGAAAGATCCTGAGG...TGCACCACACCCTACCCCATCCTGTGCACTTTGATTCTGTCTCTGTAACAATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006687.5 |
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| CDS-3UTR TCA 90 bp | GACAGTGTCAGCAAACCTTTATTGTTACAGAGACAGAATCAAAGTGCACAGGATCTTCTCCTTCATACTTaGAGAGGGTCCCATTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: DSVSKPLLLQRQNQSAQDLLLHT*RGSHSL Trigger: GAGAGAATGGGACCCTCTTCAAGTATGAAGGAGAAG...ATCCTGTGCACTTTGATTCTGTCTCTGTAACAATAAAGGTTTGCTGACACTGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006687.5 |
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| CDS-3UTR GCA 90 bp | AGTGTCAGCAAACCTTTATTGTTACAGAGACAGAATCAAAGTGCACAGGATGGGTTCTCCAACTCAAGATaGTTCTTTTCCTGTTCACTG | + |
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Preference number: 4 (lower is better) Translates to: SVSKPLLLQRQNQSAQDGFSNSR*FFSCSL Trigger: CAGTGAACAGGAAAAGAAGCATCTTGAGTTGGAGAA...CCCATCCTGTGCACTTTGATTCTGTCTCTGTAACAATAAAGGTTTGCTGACACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006687.5 |
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| CDS-3UTR TCA 90 bp | GATATTGACAGTGTCAGCAAACCTTTATTGTTACAGAGACAGAATCAAAGTGCAAGTCAGCCACAGCAATaGGAAACCATTTGCCAGATA | + |
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Preference number: 4 (lower is better) Translates to: DIDSVSKPLLLQRQNQSASQPQQ*ETICQI Trigger: TATCTGGCAAATGGTTTCTCATTGCTGTGGCTGACT...TGCACTTTGATTCTGTCTCTGTAACAATAAAGGTTTGCTGACACTGTCAATATC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006687.5 |
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| CDS TCA 90 bp | TCATTGGTGATAGGGTCGCCTATGTTGATGGCATGCTCTGGGTTCTaGGCTTCCAACAGTGGCAGGAGGCTCAACATGATGAGAACCGTG | + |
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Preference number: 5 (lower is better) Translates to: SLVIGSPMLMACSGF*ASNSGRRLNMMRTV Trigger: CACGGTTCTCATCATGTTGAGCCTCCTGCCACTGTTGGAAGCTCAGAACCCAGAGCATGCCATCAACATAGGCGACCCTATCACCAATGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006687.5 |
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| CDS TCA 90 bp | CTAGCACTCTCAGGTGGAGAAGGGTTTCTACTTCTCCTTCATACTTaGAGAGGGTCCCATTCTCTCTCTGGAATCCCAGAAGGTTGGAGT | + |
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Preference number: 5 (lower is better) Translates to: LALSGGEGFLLLLHT*RGSHSLSGIPEGWS Trigger: ACTCCAACCTTCTGGGATTCCAGAGAGAGAATGGGACCCTCTTCAAGTATGAAGGAGAAGTAGAAACCCTTCTCCACCTGAGAGTGCTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006687.5 |
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| CDS GCA 90 bp | TGGCTTTCCTCAGGATCTTTCTTGGTCTCCTTCTCCAACTCAAGATaGTTCTTTTCCTGTTCACTGCACCTGTCCTTTTTCCAGTCGACA | + |
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Preference number: 5 (lower is better) Translates to: WLSSGSFLVSFSNSR*FFSCSLHLSFFQST Trigger: TGTCGACTGGAAAAAGGACAGGTGCAGTGAACAGGAAAAGAAGCATCTTGAGTTGGAGAAGGAGACCAAGAAAGATCCTGAGGAAAGCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006687.5 |
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| CDS-3UTR CAA 90 bp | CAGTGTCAGCAAACCTTTATTGTTACAGAGACAGAATCAAAGTGCACAGGATGGATAGGGTCGCCTATGTaGATGGCATGCTCTGGGTTC | + |
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Preference number: 5 (lower is better) Translates to: QCQQTFIVTETESKCTGWIGSPM*MACSGF Trigger: GAACCCAGAGCATGCCATCAACATAGGCGACCCTAT...CCATCCTGTGCACTTTGATTCTGTCTCTGTAACAATAAAGGTTTGCTGACACTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006687.5 |
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| CDS TCA 90 bp | CTGTTCACTGCACCTGTCCTTTTTCCAGTCGACAAATATGATTTCTaGTTCATCCATGCCCACGTGTGTGACAGCCTTCTGAAATACTTC | + |
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Preference number: 5 (lower is better) Translates to: LFTAPVLFPVDKYDF*FIHAHVCDSLLKYF Trigger: GAAGTATTTCAGAAGGCTGTCACACACGTGGGCATGGATGAATCAGAAATCATATTTGTCGACTGGAAAAAGGACAGGTGCAGTGAACAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006687.5 |
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| CDS-3UTR CAA 90 bp | ATATTGACAGTGTCAGCAAACCTTTATTGTTACAGAGACAGAATCAAAGTGCACTCCTCAGGATCTTTCTaGGTCTCCTTCTCCAACTCA | + |
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Preference number: 5 (lower is better) Translates to: ILTVSANLYCYRDRIKVHSSGSF*VSFSNS Trigger: TGAGTTGGAGAAGGAGACCAAGAAAGATCCTGAGGA...GTGCACTTTGATTCTGTCTCTGTAACAATAAAGGTTTGCTGACACTGTCAATAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006687.5 |
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| CDS TCA 72 bp | ATAGGGTCGCCTATGTTGATGGCATGCTCTGGGTTCTaGGCTTCCAACAGTGGCAGGAGGCTCAACATGATG | + |
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Preference number: 6 (lower is better) Translates to: IGSPMLMACSGF*ASNSGRRLNMM Trigger: CATCATGTTGAGCCTCCTGCCACTGTTGGAAGCTCAGAACCCAGAGCATGCCATCAACATAGGCGACCCTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006687.5 |
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| CDS CAA 72 bp | CTCAGGTGGAGAAGGGTTTCTACTTCTCCTTCATACTaGAAGAGGGTCCCATTCTCTCTCTGGAATCCCAGA | + |
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Preference number: 6 (lower is better) Translates to: LRWRRVSTSPSY*KRVPFSLWNPR Trigger: TCTGGGATTCCAGAGAGAGAATGGGACCCTCTTCAAGTATGAAGGAGAAGTAGAAACCCTTCTCCACCTGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006687.5 |
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| CDS CCA 72 bp | AGAGGGTCCCATTCTCTCTCTGGAATCCCAGAAGGTTaGAGTTATAGACACAGTGGTCATCTTTGGTGTGAT | + |
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Preference number: 6 (lower is better) Translates to: RGSHSLSGIPEG*SYRHSGHLWCD Trigger: ATCACACCAAAGATGACCACTGTGTCTATAACTCCAACCTTCTGGGATTCCAGAGAGAGAATGGGACCCTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006687.5 |
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| CDS GCA 72 bp | TCAGGATCTTTCTTGGTCTCCTTCTCCAACTCAAGATaGTTCTTTTCCTGTTCACTGCACCTGTCCTTTTTC | + |
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Preference number: 6 (lower is better) Translates to: SGSFLVSFSNSR*FFSCSLHLSFF Trigger: GAAAAAGGACAGGTGCAGTGAACAGGAAAAGAAGCATCTTGAGTTGGAGAAGGAGACCAAGAAAGATCCTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006687.5 |
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