Pregenerated sensors for ORM1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039196Ensembl transcript IDs: ENSMUST00000030044.3
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | ATATTGACTATGTCAGCAAACCTTTATTGTGGCAGAGACAGAATCAAAGTGCACAGGGGTGGGGTTTGGTaGGCCTGTGGACAGCCCTCG | + |
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Preference number: 2 (lower is better) Translates to: ILTMSANLYCGRDRIKVHRGGVW*ACGQPS Trigger: CGAGGGCTGTCCACAGGCTCACCAAACCCCACCCCT...GTGCACTTTGATTCTGTCTCTGCCACAATAAAGGTTTGCTGACATAGTCAATAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030044.3 |
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| CDS-3UTR TCA 90 bp | GACTATGTCAGCAAACCTTTATTGTGGCAGAGACAGAATCAAAGTGCACAGGAGGGTCAAAGGCAAGCATaGAGGCCCCATGTTTCCTCA | + |
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Preference number: 4 (lower is better) Translates to: DYVSKPLLWQRQNQSAQEGQRQA*RPHVSS Trigger: TGAGGAAACATGGGGCCTTCATGCTTGCCTTTGACC...CTCCTGTGCACTTTGATTCTGTCTCTGCCACAATAAAGGTTTGCTGACATAGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030044.3 |
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| CDS-3UTR TCA 90 bp | GACTATGTCAGCAAACCTTTATTGTGGCAGAGACAGAATCAAAGTGCACAGGAGTGCTTCTTCTCCTGCTaGCCGCACCTATCCTTTTTC | + |
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Preference number: 4 (lower is better) Translates to: DYVSKPLLWQRQNQSAQECFFSC*PHLSFF Trigger: GAAAAAGGATAGGTGCGGTCAGCAGGAGAAGAAGCA...CTCCTGTGCACTTTGATTCTGTCTCTGCCACAATAAAGGTTTGCTGACATAGTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030044.3 |
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| CDS-3UTR CCA 90 bp | CTATGTCAGCAAACCTTTATTGTGGCAGAGACAGAATCAAAGTGCACAGGAGGGCCTCAGGATCTTTCTTaGTCTCCTTCCCCAACTCAA | + |
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Preference number: 4 (lower is better) Translates to: LCQQTFIVAETESKCTGGPQDLS*SPSPTQ Trigger: TTGAGTTGGGGAAGGAGACCAAGAAAGATCCTGAGG...CCCTCCTGTGCACTTTGATTCTGTCTCTGCCACAATAAAGGTTTGCTGACATAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030044.3 |
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| CDS-3UTR TCA 90 bp | CTATGTCAGCAAACCTTTATTGTGGCAGAGACAGAATCAAAGTGCACAGGAGGGTGGTCACCTATTGTTTaGGACTCCCGAAGCTCTATT | + |
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Preference number: 4 (lower is better) Translates to: LCQQTFIVAETESKCTGGWSPIV*DSRSSI Trigger: AATAGAGCTTCGGGAGTCTCAAACAATAGGTGACCA...CCCTCCTGTGCACTTTGATTCTGTCTCTGCCACAATAAAGGTTTGCTGACATAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030044.3 |
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| CDS-3UTR CCA 90 bp | ATGTCAGCAAACCTTTATTGTGGCAGAGACAGAATCAAAGTGCACAGGAGGGGTGGAATCCTAGATGGGTaGAGTTATAGACACACTGGT | + |
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Preference number: 4 (lower is better) Translates to: MSANLYCGRDRIKVHRRGGILDG*SYRHTG Trigger: ACCAGTGTGTCTATAACTCCACCCATCTAGGATTCC...ACCCCTCCTGTGCACTTTGATTCTGTCTCTGCCACAATAAAGGTTTGCTGACAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030044.3 |
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| CDS-3UTR CCA 90 bp | ACTATGTCAGCAAACCTTTATTGTGGCAGAGACAGAATCAAAGTGCACAGGAGGCTCCTCCTTCATACTTaGAGAAGGTCCCATTTTCTC | + |
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Preference number: 4 (lower is better) Translates to: TMSANLYCGRDRIKVHRRLLLHT*RRSHFL Trigger: GAGAAAATGGGACCTTCTCCAAGTATGAAGGAGGAG...CCTCCTGTGCACTTTGATTCTGTCTCTGCCACAATAAAGGTTTGCTGACATAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030044.3 |
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| CDS-3UTR CCA 90 bp | ACTATGTCAGCAAACCTTTATTGTGGCAGAGACAGAATCAAAGTGCACAGGAGGCTCAGCACTATAAGGTaGGCAAAGGTTTCTACTCCT | + |
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Preference number: 4 (lower is better) Translates to: TMSANLYCGRDRIKVHRRLSTIR*AKVSTP Trigger: AGGAGTAGAAACCTTTGCCCACCTTATAGTGCTGAG...CCTCCTGTGCACTTTGATTCTGTCTCTGCCACAATAAAGGTTTGCTGACATAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030044.3 |
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| CDS-3UTR CCA 90 bp | TTGACTATGTCAGCAAACCTTTATTGTGGCAGAGACAGAATCAAAGTGCACAGGGAAGTTGGCATGTTCTaGGTTCTGAGCTTCCAACAT | + |
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Preference number: 4 (lower is better) Translates to: LTMSANLYCGRDRIKVHREVGMF*VLSFQH Trigger: ATGTTGGAAGCTCAGAACCCAGAACATGCCAACTTC...CCTGTGCACTTTGATTCTGTCTCTGCCACAATAAAGGTTTGCTGACATAGTCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030044.3 |
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| CDS-3UTR GCA 90 bp | ATGTCAGCAAACCTTTATTGTGGCAGAGACAGAATCAAAGTGCACAGGAGGGGTGAGTTTTCTGAAAGCTaGACCCATGAAAAACCATTT | + |
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Preference number: 4 (lower is better) Translates to: MSANLYCGRDRIKVHRRGEFSES*THEKPF Trigger: AAATGGTTTTTCATGGGTGCAGCTTTCAGAAAACTC...ACCCCTCCTGTGCACTTTGATTCTGTCTCTGCCACAATAAAGGTTTGCTGACAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000030044.3 |
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| CDS-3UTR CCA 90 bp | ATATTGACTATGTCAGCAAACCTTTATTGTGGCAGAGACAGAATCAAAGTGCACGTCCCATTTTCTCTCTaGAATCCTAGATGGGTGGAG | + |
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Preference number: 4 (lower is better) Translates to: ILTMSANLYCGRDRIKVHVPFSL*NPRWVE Trigger: CTCCACCCATCTAGGATTCCAGAGAGAAAATGGGAC...GTGCACTTTGATTCTGTCTCTGCCACAATAAAGGTTTGCTGACATAGTCAATAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030044.3 |
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| CDS CCA 90 bp | AATATGATTTCTGATTCATCCATGCCCACGTGTGTGACAGCCTTCTaGAATACTTCCCGCAGCTCCGGGGTGATATCTGGCCTTTTGGCA | + |
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Preference number: 5 (lower is better) Translates to: NMISDSSMPTCVTAF*NTSRSSGVISGLLA Trigger: TGCCAAAAGGCCAGATATCACCCCGGAGCTGCGGGAAGTATTCCAGAAGGCTGTCACACACGTGGGCATGGATGAATCAGAAATCATATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030044.3 |
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| CDS CCA 90 bp | GGTCTCATTGGTGATAGGTTCGCCTATGGTGAAGTTGGCATGTTCTaGGTTCTGAGCTTCCAACATCGGCAGAAGGCTCAATATGATAAG | + |
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Preference number: 5 (lower is better) Translates to: GLIGDRFAYGEVGMF*VLSFQHRQKAQYDK Trigger: CTTATCATATTGAGCCTTCTGCCGATGTTGGAAGCTCAGAACCCAGAACATGCCAACTTCACCATAGGCGAACCTATCACCAATGAGACC 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030044.3 |
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| CDS TCA 90 bp | CTGCTGACCGCACCTATCCTTTTTCCAGTCGACAAATATGATTTCTaGTTCATCCATGCCCACGTGTGTGACAGCCTTCTGGAATACTTC | + |
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Preference number: 5 (lower is better) Translates to: LLTAPILFPVDKYDF*FIHAHVCDSLLEYF Trigger: GAAGTATTCCAGAAGGCTGTCACACACGTGGGCATGGATGAATCAGAAATCATATTTGTCGACTGGAAAAAGGATAGGTGCGGTCAGCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030044.3 |
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| CDS-3UTR CAA 90 bp | GACTATGTCAGCAAACCTTTATTGTGGCAGAGACAGAATCAAAGTGCACAGGAGTCCTCAGGATCTTTCTaGGTCTCCTTCCCCAACTCA | + |
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Preference number: 5 (lower is better) Translates to: DYVSKPLLWQRQNQSAQESSGSF*VSFPNS Trigger: TGAGTTGGGGAAGGAGACCAAGAAAGATCCTGAGGA...CTCCTGTGCACTTTGATTCTGTCTCTGCCACAATAAAGGTTTGCTGACATAGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030044.3 |
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| CDS CCA 90 bp | CATACTTGGAGAAGGTCCCATTTTCTCTCTGGAATCCTAGATGGGTaGAGTTATAGACACACTGGTCACCTATTGTTTGAGACTCCCGAA | + |
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Preference number: 5 (lower is better) Translates to: HTWRRSHFLSGILDG*SYRHTGHLLFETPE Trigger: TTCGGGAGTCTCAAACAATAGGTGACCAGTGTGTCTATAACTCCACCCATCTAGGATTCCAGAGAGAAAATGGGACCTTCTCCAAGTATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030044.3 |
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| CDS-3UTR CAA 90 bp | ATATTGACTATGTCAGCAAACCTTTATTGTGGCAGAGACAGAATCAAAGTGCACCCCATGAAAAACCATTaGTCAGAGAGCCAGCTCAGG | + |
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Preference number: 5 (lower is better) Translates to: ILTMSANLYCGRDRIKVHPMKNH*SESQLR Trigger: CCTGAGCTGGCTCTCTGACAAATGGTTTTTCATGGG...GTGCACTTTGATTCTGTCTCTGCCACAATAAAGGTTTGCTGACATAGTCAATAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030044.3 |
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| CDS-3UTR CAA 90 bp | GACTATGTCAGCAAACCTTTATTGTGGCAGAGACAGAATCAAAGTGCACAGGAGAAAATTCACTCTGCATaGTTTGAATTGCCTGCCTGT | + |
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Preference number: 5 (lower is better) Translates to: DYVSKPLLWQRQNQSAQEKIHSA*FELPAC Trigger: ACAGGCAGGCAATTCAAACAATGCAGAGTGAATTTT...CTCCTGTGCACTTTGATTCTGTCTCTGCCACAATAAAGGTTTGCTGACATAGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030044.3 |
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| CDS-3UTR CAA 90 bp | GATATTGACTATGTCAGCAAACCTTTATTGTGGCAGAGACAGAATCAAAGTGCACGTTTCTTCTCATCCTaGAGGTCAAAGGCAAGCATG | + |
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Preference number: 5 (lower is better) Translates to: DIDYVSKPLLWQRQNQSARFFSS*RSKASM Trigger: CATGCTTGCCTTTGACCTCAAGGATGAGAAGAAACG...TGCACTTTGATTCTGTCTCTGCCACAATAAAGGTTTGCTGACATAGTCAATATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030044.3 |
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| CDS CCA 72 bp | TCTGATTCATCCATGCCCACGTGTGTGACAGCCTTCTaGAATACTTCCCGCAGCTCCGGGGTGATATCTGGC | + |
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Preference number: 6 (lower is better) Translates to: SDSSMPTCVTAF*NTSRSSGVISG Trigger: GCCAGATATCACCCCGGAGCTGCGGGAAGTATTCCAGAAGGCTGTCACACACGTGGGCATGGATGAATCAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030044.3 |
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| CDS CCA 72 bp | GGTGATAGGTTCGCCTATGGTGAAGTTGGCATGTTCTaGGTTCTGAGCTTCCAACATCGGCAGAAGGCTCAA | + |
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Preference number: 6 (lower is better) Translates to: GDRFAYGEVGMF*VLSFQHRQKAQ Trigger: TTGAGCCTTCTGCCGATGTTGGAAGCTCAGAACCCAGAACATGCCAACTTCACCATAGGCGAACCTATCACC 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030044.3 |
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| CDS CAA 90 bp | CTCAGCACTATAAGGTGGGCAAAGGTTTCTACTCCTCCTTCATACTaGGAGAAGGTCCCATTTTCTCTCTGGAATCCTAGATGGGTGGAG | + |
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Preference number: 6 (lower is better) Translates to: LSTIRWAKVSTPPSY*EKVPFSLWNPRWVE Trigger: CTCCACCCATCTAGGATTCCAGAGAGAAAATGGGACCTTCTCCAAGTATGAAGGAGGAGTAGAAACCTTTGCCCACCTTATAGTGCTGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030044.3 |
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| CDS GCA 72 bp | TTGAATTGCCTGCCTGTACTCGAGTTTTCTGAAAGCTaGACCCATGAAAAACCATTTGTCAGAGAGCCAGCT | + |
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Preference number: 6 (lower is better) Translates to: LNCLPVLEFSES*THEKPFVREPA Trigger: AGCTGGCTCTCTGACAAATGGTTTTTCATGGGTGCAGCTTTCAGAAAACTCGAGTACAGGCAGGCAATTCAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030044.3 |
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| CDS CAA 72 bp | CTAGATGGGTGGAGTTATAGACACACTGGTCACCTATaGTTTGAGACTCCCGAAGCTCTATTGTGTCGTTTA | + |
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Preference number: 6 (lower is better) Translates to: LDGWSYRHTGHL*FETPEALLCRL Trigger: TAAACGACACAATAGAGCTTCGGGAGTCTCAAACAATAGGTGACCAGTGTGTCTATAACTCCACCCATCTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030044.3 |
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| CDS CAA 72 bp | ATAAGGTGGGCAAAGGTTTCTACTCCTCCTTCATACTaGGAGAAGGTCCCATTTTCTCTCTGGAATCCTAGA | + |
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Preference number: 6 (lower is better) Translates to: IRWAKVSTPPSY*EKVPFSLWNPR Trigger: TCTAGGATTCCAGAGAGAAAATGGGACCTTCTCCAAGTATGAAGGAGGAGTAGAAACCTTTGCCCACCTTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030044.3 |
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