Pregenerated sensors for ORC5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029012Ensembl transcript IDs: ENSMUST00000030872.12, ENSMUST00000141263.3
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AATCAGAGGGTTTTCATCGGATTCCATGCTGGGCCAGCACCTGTTTaGACAAATCCAATCCAGCCAAAGAACTCCTTTCCCCGGCCAGCT | + |
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Preference number: 1 (lower is better) Translates to: NQRVFIGFHAGPAPV*TNPIQPKNSFPRPA Trigger: AGCTGGCCGGGGAAAGGAGTTCTTTGGCTGGATTGGATTTGTCCAAACAGGTGCTGGCCCAGCATGGAATCCGATGAAAACCCTCTGATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| 3UTR GCA 90 bp | GCTCACAGCTACCCAGACCAATCAGAGGGTTTTCATCGGATTCCATaGTGGGCCAGCACCTGTTTGGACAAATCCAATCCAGCCAAAGAA | + |
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Preference number: 1 (lower is better) Translates to: AHSYPDQSEGFHRIP*WASTCLDKSNPAKE Trigger: TTCTTTGGCTGGATTGGATTTGTCCAAACAGGTGCTGGCCCAGCATGGAATCCGATGAAAACCCTCTGATTGGTCTGGGTAGCTGTGAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| 3UTR CCA 90 bp | CACAGCTACCCAGACCAATCAGAGGGTTTTCATCGGATTCCATGCTaGGCCAGCACCTGTTTGGACAAATCCAATCCAGCCAAAGAACTC | + |
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Preference number: 1 (lower is better) Translates to: HSYPDQSEGFHRIPC*ASTCLDKSNPAKEL Trigger: GAGTTCTTTGGCTGGATTGGATTTGTCCAAACAGGTGCTGGCCCAGCATGGAATCCGATGAAAACCCTCTGATTGGTCTGGGTAGCTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| 3UTR CCA 90 bp | AGAACTCCTTTCCCCGGCCAGCTGAGTATTTGGATGAACACAGCTTaGCTTAGTCATTGTCACAGTGTCCATATGGCTTTGAGGCTTGTT | + |
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Preference number: 1 (lower is better) Translates to: RTPFPGQLSIWMNTA*LSHCHSVHMALRLV Trigger: AACAAGCCTCAAAGCCATATGGACACTGTGACAATGACTAAGCCAAGCTGTGTTCATCCAAATACTCAGCTGGCCGGGGAAAGGAGTTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| 3UTR CCA 90 bp | ATCCAATCCAGCCAAAGAACTCCTTTCCCCGGCCAGCTGAGTATTTaGATGAACACAGCTTGGCTTAGTCATTGTCACAGTGTCCATATG | + |
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Preference number: 1 (lower is better) Translates to: IQSSQRTPFPGQLSI*MNTAWLSHCHSVHM Trigger: CATATGGACACTGTGACAATGACTAAGCCAAGCTGTGTTCATCCAAATACTCAGCTGGCCGGGGAAAGGAGTTCTTTGGCTGGATTGGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| 3UTR CAA 90 bp | CAATCAGAGGGTTTTCATCGGATTCCATGCTGGGCCAGCACCTGTTaGGACAAATCCAATCCAGCCAAAGAACTCCTTTCCCCGGCCAGC | + |
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Preference number: 2 (lower is better) Translates to: QSEGFHRIPCWASTC*DKSNPAKELLSPAS Trigger: GCTGGCCGGGGAAAGGAGTTCTTTGGCTGGATTGGATTTGTCCAAACAGGTGCTGGCCCAGCATGGAATCCGATGAAAACCCTCTGATTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| 3UTR-3UTR CAA 90 bp | GGTAAACCGTCTTCTGCTCACAGCTACCCAGACCAATCAGAGGGTTTTCATCGGTGGGCCAGCACCTGTTaGGACAAATCCAATCCAGCC | + |
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Preference number: 3 (lower is better) Translates to: GKPSSAHSYPDQSEGFHRWASTC*DKSNPA Trigger: GGCTGGATTGGATTTGTCCAAACAGGTGCTGGCCCA...CCGATGAAAACCCTCTGATTGGTCTGGGTAGCTGTGAGCAGAAGACGGTTTACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| 3UTR CCA 72 bp | CCAGACCAATCAGAGGGTTTTCATCGGATTCCATGCTaGGCCAGCACCTGTTTGGACAAATCCAATCCAGCC | + |
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Preference number: 3 (lower is better) Translates to: PDQSEGFHRIPC*ASTCLDKSNPA Trigger: GGCTGGATTGGATTTGTCCAAACAGGTGCTGGCCCAGCATGGAATCCGATGAAAACCCTCTGATTGGTCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| 3UTR GCA 72 bp | TACCCAGACCAATCAGAGGGTTTTCATCGGATTCCATaGTGGGCCAGCACCTGTTTGGACAAATCCAATCCA | + |
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Preference number: 3 (lower is better) Translates to: YPDQSEGFHRIP*WASTCLDKSNP Trigger: TGGATTGGATTTGTCCAAACAGGTGCTGGCCCAGCATGGAATCCGATGAAAACCCTCTGATTGGTCTGGGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| 3UTR CCA 72 bp | GTTTTCATCGGATTCCATGCTGGGCCAGCACCTGTTTaGACAAATCCAATCCAGCCAAAGAACTCCTTTCCC | + |
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Preference number: 3 (lower is better) Translates to: VFIGFHAGPAPV*TNPIQPKNSFP Trigger: GGGAAAGGAGTTCTTTGGCTGGATTGGATTTGTCCAAACAGGTGCTGGCCCAGCATGGAATCCGATGAAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| 3UTR CCA 72 bp | TTCCCCGGCCAGCTGAGTATTTGGATGAACACAGCTTaGCTTAGTCATTGTCACAGTGTCCATATGGCTTTG | + |
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Preference number: 3 (lower is better) Translates to: FPGQLSIWMNTA*LSHCHSVHMAL Trigger: CAAAGCCATATGGACACTGTGACAATGACTAAGCCAAGCTGTGTTCATCCAAATACTCAGCTGGCCGGGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| 3UTR CCA 72 bp | AGCCAAAGAACTCCTTTCCCCGGCCAGCTGAGTATTTaGATGAACACAGCTTGGCTTAGTCATTGTCACAGT | + |
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Preference number: 3 (lower is better) Translates to: SQRTPFPGQLSI*MNTAWLSHCHS Trigger: ACTGTGACAATGACTAAGCCAAGCTGTGTTCATCCAAATACTCAGCTGGCCGGGGAAAGGAGTTCTTTGGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| 3UTR GCA 72 bp | AGGTTAGCAAGCAGAGTTAGACATGAAGCTGCTGTGTaGACAATGAACAAGCTGCCAGGTTTTGAGAAAACT | + |
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Preference number: 3 (lower is better) Translates to: RLASRVRHEAAV*TMNKLPGFEKT Trigger: AGTTTTCTCAAAACCTGGCAGCTTGTTCATTGTGCACACAGCAGCTTCATGTCTAACTCTGCTTGCTAACCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| 3UTR TCA 72 bp | AAAAGAAAAATGGAAGGAAGGAACACAATACGTTGGTaGACTGGGAGTGACCAGTACTGTCAGGTTAGCAAG | + |
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Preference number: 3 (lower is better) Translates to: KRKMEGRNTIRW*TGSDQYCQVSK Trigger: CTTGCTAACCTGACAGTACTGGTCACTCCCAGTTCACCAACGTATTGTGTTCCTTCCTTCCATTTTTCTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR GCA 90 bp | AAATACTCCTGGGCCCCTGGTAAACCGTCTTCTGCTCACAGCTACCCAGACCAATCTCCAAACAGGGACTaGAAAGTGGACACTTGGGCC | + |
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Preference number: 4 (lower is better) Translates to: KYSWAPGKPSSAHSYPDQSPNRD*KVDTWA Trigger: GGCCCAAGTGTCCACTTTGCAGTCCCTGTTTGGAGA...TTGGTCTGGGTAGCTGTGAGCAGAAGACGGTTTACCAGGGGCCCAGGAGTATTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR GCA 90 bp | CCAGCACCTGTTTGGACAAATCCAATCCAGCCAAAGAACTCCTTTCCCCGGCCACTGTCAGTCAATTCTTaGAGCCTAAGGAGCCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: PAPVWTNPIQPKNSFPRPLSVNS*SLRSPG Trigger: GCCTGGGCTCCTTAGGCTGCAAGAATTGACTGACAG...TGGCCGGGGAAAGGAGTTCTTTGGCTGGATTGGATTTGTCCAAACAGGTGCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR CCA 90 bp | ACTCCTTTCCCCGGCCAGCTGAGTATTTGGATGAACACAGCTTGGCTTAGTCATTGCAAAGTGGACACTTaGGCCTCTCGACAGAGGACC | + |
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Preference number: 4 (lower is better) Translates to: TPFPGQLSIWMNTAWLSHCKVDT*ASRQRT Trigger: GGTCCTCTGTCGAGAGGCCCAAGTGTCCACTTTGCA...ATGACTAAGCCAAGCTGTGTTCATCCAAATACTCAGCTGGCCGGGGAAAGGAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR CCA 90 bp | GTTTGGACAAATCCAATCCAGCCAAAGAACTCCTTTCCCCGGCCAGCTGAGTATACAGGGACTGCAAAGTaGACACTTGGGCCTCTCGAC | + |
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Preference number: 4 (lower is better) Translates to: VWTNPIQPKNSFPRPAEYTGTAK*TLGPLD Trigger: GTCGAGAGGCCCAAGTGTCCACTTTGCAGTCCCTGT...ATACTCAGCTGGCCGGGGAAAGGAGTTCTTTGGCTGGATTGGATTTGTCCAAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR TCA 90 bp | TCATCGGATTCCATGCTGGGCCAGCACCTGTTTGGACAAATCCAATCCAGCCAATTCCCACTGGGAACTTaGGATCTCCCTGAGATACAC | + |
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Preference number: 4 (lower is better) Translates to: SSDSMLGQHLFGQIQSSQFPLGT*DLPEIH Trigger: GTGTATCTCAGGGAGATCTCAAGTTCCCAGTGGGAA...TTGGCTGGATTGGATTTGTCCAAACAGGTGCTGGCCCAGCATGGAATCCGATGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR GCA 90 bp | CCAATCAGAGGGTTTTCATCGGATTCCATGCTGGGCCAGCACCTGTTTGGACAACTGGGAGAAGATATTTaGTGTTGGAGCCACTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: PIRGFSSDSMLGQHLFGQLGEDI*CWSHSA Trigger: AGCAGAGTGGCTCCAACAGCAAATATCTTCTCCCAG...TTGTCCAAACAGGTGCTGGCCCAGCATGGAATCCGATGAAAACCCTCTGATTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| 3UTR CAA 72 bp | GGTTTTCATCGGATTCCATGCTGGGCCAGCACCTGTTaGGACAAATCCAATCCAGCCAAAGAACTCCTTTCC | + |
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Preference number: 4 (lower is better) Translates to: GFHRIPCWASTC*DKSNPAKELLS Trigger: GGAAAGGAGTTCTTTGGCTGGATTGGATTTGTCCAAACAGGTGCTGGCCCAGCATGGAATCCGATGAAAACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR TCA 90 bp | CGGATTCCATGCTGGGCCAGCACCTGTTTGGACAAATCCAATCCAGCCAAAGAAGAATACTCTGGAGGATaGTCATGGGACAGGATCTTT | + |
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Preference number: 4 (lower is better) Translates to: RIPCWASTCLDKSNPAKEEYSGG*SWDRIF Trigger: AAAGATCCTGTCCCATGATCATCCTCCAGAGTATTC...TTCTTTGGCTGGATTGGATTTGTCCAAACAGGTGCTGGCCCAGCATGGAATCCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR TCA 90 bp | AAATACTCCTGGGCCCCTGGTAAACCGTCTTCTGCTCACAGCTACCCAGACCAAATTGCCTTCTTCAGGTaGGGTTCAATATTTCTCCAC | + |
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Preference number: 4 (lower is better) Translates to: KYSWAPGKPSSAHSYPDQIAFFR*GSIFLH Trigger: GTGGAGAAATATTGAACCTCACCTGAAGAAGGCAAT...TTGGTCTGGGTAGCTGTGAGCAGAAGACGGTTTACCAGGGGCCCAGGAGTATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR GCA 90 bp | CTGTTTGGACAAATCCAATCCAGCCAAAGAACTCCTTTCCCCGGCCAGCTGAGTATACACAGTCTGCATTaGCTTCTTCAGGTGAGGTTC | + |
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Preference number: 4 (lower is better) Translates to: LFGQIQSSQRTPFPGQLSIHSLH*LLQVRF Trigger: GAACCTCACCTGAAGAAGGCAATGCAGACTGTGTAT...ACTCAGCTGGCCGGGGAAAGGAGTTCTTTGGCTGGATTGGATTTGTCCAAACAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR GCA 90 bp | GGACAAATCCAATCCAGCCAAAGAACTCCTTTCCCCGGCCAGCTGAGTATTTGGTATTTCTCCACAGTTTaGGAGTATCACGTTCACCTG | + |
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Preference number: 4 (lower is better) Translates to: GQIQSSQRTPFPGQLSIWYFSTV*EYHVHL Trigger: CAGGTGAACGTGATACTCGCAAACTGTGGAGAAATA...CCAAATACTCAGCTGGCCGGGGAAAGGAGTTCTTTGGCTGGATTGGATTTGTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR GCA 90 bp | CAATCAGAGGGTTTTCATCGGATTCCATGCTGGGCCAGCACCTGTTTGGACAAACTGTTGGAGCCACTCTaGTGTCCACTATACTATACA | + |
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Preference number: 4 (lower is better) Translates to: QSEGFHRIPCWASTCLDKLLEPL*CPLYYT Trigger: TGTATAGTATAGTGGACAGCAGAGTGGCTCCAACAG...TTTGTCCAAACAGGTGCTGGCCCAGCATGGAATCCGATGAAAACCCTCTGATTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR CCA 90 bp | GTTTGGACAAATCCAATCCAGCCAAAGAACTCCTTTCCCCGGCCAGCTGAGTATTGTAACTTTTCCCACTaGGAACTTGAGATCTCCCTG | + |
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Preference number: 4 (lower is better) Translates to: VWTNPIQPKNSFPRPAEYCNFSH*ELEISL Trigger: CAGGGAGATCTCAAGTTCCCAGTGGGAAAAGTTACA...ATACTCAGCTGGCCGGGGAAAGGAGTTCTTTGGCTGGATTGGATTTGTCCAAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR CCA 90 bp | CCAATCAGAGGGTTTTCATCGGATTCCATGCTGGGCCAGCACCTGTTTGGACAAACCTTTCAGTTGTCCTaGGTCTGTGTTATCTTTCTG | + |
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Preference number: 4 (lower is better) Translates to: PIRGFSSDSMLGQHLFGQTFQLS*VCVIFL Trigger: CAGAAAGATAACACAGACCCAGGACAACTGAAAGGT...TTGTCCAAACAGGTGCTGGCCCAGCATGGAATCCGATGAAAACCCTCTGATTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR TCA 90 bp | GTTAGACATGAAGCTGCTGTGTGCACAATGAACAAGCTGCCAGGTTTTGAGAAAACACAGTCTGGTCCTTaGGATGTTCAGCACTGGTCA | + |
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Preference number: 4 (lower is better) Translates to: VRHEAAVCTMNKLPGFEKTQSGP*DVQHWS Trigger: TGACCAGTGCTGAACATCTCAAGGACCAGACTGTGT...TTTCTCAAAACCTGGCAGCTTGTTCATTGTGCACACAGCAGCTTCATGTCTAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR GCA 90 bp | GTCTTCTGCTCACAGCTACCCAGACCAATCAGAGGGTTTTCATCGGATTCCATGCAATTCACAAAGGCATaGGGCAGCTCTAAAGTTTTC | + |
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Preference number: 4 (lower is better) Translates to: VFCSQLPRPIRGFSSDSMQFTKA*GSSKVF Trigger: GAAAACTTTAGAGCTGCCGCATGCCTTTGTGAATTG...CATGGAATCCGATGAAAACCCTCTGATTGGTCTGGGTAGCTGTGAGCAGAAGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR TCA 90 bp | TTAGCAAGCAGAGTTAGACATGAAGCTGCTGTGTGCACAATGAACAAGCTGCCAAACTTGAGATCTCCCTaGGATACACAGTCTGCATTG | + |
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Preference number: 4 (lower is better) Translates to: LASRVRHEAAVCTMNKLPNLRSP*DTQSAL Trigger: CAATGCAGACTGTGTATCTCAGGGAGATCTCAAGTT...TGGCAGCTTGTTCATTGTGCACACAGCAGCTTCATGTCTAACTCTGCTTGCTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR GCA 90 bp | CCAGCACCTGTTTGGACAAATCCAATCCAGCCAAAGAACTCCTTTCCCCGGCCATTGCTTGTCTTCTCATaGTTCTTTAGAAAGTTAGTC | + |
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Preference number: 4 (lower is better) Translates to: PAPVWTNPIQPKNSFPRPLLVFS*FFRKLV Trigger: GACTAACTTTCTAAAGAAGCATGAGAAGACAAGCAA...TGGCCGGGGAAAGGAGTTCTTTGGCTGGATTGGATTTGTCCAAACAGGTGCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR GCA 90 bp | GTTTGGACAAATCCAATCCAGCCAAAGAACTCCTTTCCCCGGCCAGCTGAGTATGTCCAAGAAGATGATTaGTTGTCTTCTCATGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: VWTNPIQPKNSFPRPAEYVQEDD*LSSHAS Trigger: AGAAGCATGAGAAGACAAGCAATCATCTTCTTGGAC...ATACTCAGCTGGCCGGGGAAAGGAGTTCTTTGGCTGGATTGGATTTGTCCAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR CCA 90 bp | CAAAGAACTCCTTTCCCCGGCCAGCTGAGTATTTGGATGAACACAGCTTGGCTTACTAGGGAGGTAATCTaGGAGAAGATATTTGCTGTT | + |
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Preference number: 4 (lower is better) Translates to: QRTPFPGQLSIWMNTAWLTREVI*EKIFAV Trigger: AACAGCAAATATCTTCTCCCAGATTACCTCCCTAGT...AAGCCAAGCTGTGTTCATCCAAATACTCAGCTGGCCGGGGAAAGGAGTTCTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR CCA 90 bp | ATCCAATCCAGCCAAAGAACTCCTTTCCCCGGCCAGCTGAGTATTTGGATGAACCTTCATGACCAACTATaGTTAACAGCTGTAGAGTCA | + |
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Preference number: 4 (lower is better) Translates to: IQSSQRTPFPGQLSIWMNLHDQL*LTAVES Trigger: TGACTCTACAGCTGTTAACCATAGTTGGTCATGAAG...GTTCATCCAAATACTCAGCTGGCCGGGGAAAGGAGTTCTTTGGCTGGATTGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR TCA 90 bp | GTTAGACATGAAGCTGCTGTGTGCACAATGAACAAGCTGCCAGGTTTTGAGAAAAGCGTAAAAATCCGCTaGATACTCTGGAGGATGATC | + |
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Preference number: 4 (lower is better) Translates to: VRHEAAVCTMNKLPGFEKSVKIR*ILWRMI Trigger: GATCATCCTCCAGAGTATTCAGCGGATTTTTACGCT...TTTCTCAAAACCTGGCAGCTTGTTCATTGTGCACACAGCAGCTTCATGTCTAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR CCA 90 bp | GTTAGACATGAAGCTGCTGTGTGCACAATGAACAAGCTGCCAGGTTTTGAGAAACTTATCAGTTCTCGCTaGGTTATAAGAGGCAAGGTA | + |
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Preference number: 4 (lower is better) Translates to: VRHEAAVCTMNKLPGFEKLISSR*VIRGKV Trigger: TACCTTGCCTCTTATAACCCAGCGAGAACTGATAAG...TTTCTCAAAACCTGGCAGCTTGTTCATTGTGCACACAGCAGCTTCATGTCTAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR CCA 90 bp | CATGCTGGGCCAGCACCTGTTTGGACAAATCCAATCCAGCCAAAGAACTCCTTTTGTGCATTTGTATTTTaGCCCATTAAGTTGATCTTC | + |
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Preference number: 4 (lower is better) Translates to: HAGPAPVWTNPIQPKNSFCAFVF*PIKLIF Trigger: GAAGATCAACTTAATGGGCCAAAATACAAATGCACA...AAAGGAGTTCTTTGGCTGGATTGGATTTGTCCAAACAGGTGCTGGCCCAGCATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR TCA 90 bp | AGCTGCCAGGTTTTGAGAAAACTAGGTAAGAAGATAAACATACACAGCACATACAGATGGACGGAAAGCTaGAATGATGTCTCTCTCCAA | + |
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Preference number: 4 (lower is better) Translates to: SCQVLRKLGKKINIHSTYRWTES*NDVSLQ Trigger: TTGGAGAGAGACATCATTTCAGCTTTCCGTCCATCT...GTATGTGCTGTGTATGTTTATCTTCTTACCTAGTTTTCTCAAAACCTGGCAGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR CCA 90 bp | TGCCAGGTTTTGAGAAAACTAGGTAAGAAGATAAACATACACAGCACATACTTTGAAGATATTTGCTGTTaGAGCCACTCTGCTGTCCAC | + |
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Preference number: 4 (lower is better) Translates to: CQVLRKLGKKINIHSTYFEDICC*SHSAVH Trigger: GTGGACAGCAGAGTGGCTCCAACAGCAAATATCTTC...AAAGTATGTGCTGTGTATGTTTATCTTCTTACCTAGTTTTCTCAAAACCTGGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR TCA 90 bp | TGCCAGGTTTTGAGAAAACTAGGTAAGAAGATAAACATACACAGCACATACTTTTTTGGTCCAAGAAGATaGTTGCTTGTCTTCTCATGC | + |
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Preference number: 4 (lower is better) Translates to: CQVLRKLGKKINIHSTYFFGPRR*LLVFSC Trigger: GCATGAGAAGACAAGCAATCATCTTCTTGGACCAAA...AAAGTATGTGCTGTGTATGTTTATCTTCTTACCTAGTTTTCTCAAAACCTGGCA 38% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR CAA 90 bp | AAATACTCCTGGGCCCCTGGTAAACCGTCTTCTGCTCACAGCTACCCAGACCAAAGAAGATATTTGCTGTaGGAGCCACTCTGCTGTCCA | + |
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Preference number: 5 (lower is better) Translates to: KYSWAPGKPSSAHSYPDQRRYLL*EPLCCP Trigger: TGGACAGCAGAGTGGCTCCAACAGCAAATATCTTCT...TTGGTCTGGGTAGCTGTGAGCAGAAGACGGTTTACCAGGGGCCCAGGAGTATTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR CAA 90 bp | CATGCTGGGCCAGCACCTGTTTGGACAAATCCAATCCAGCCAAAGAACTCCTTTTACACAGTCTGGTCCTaGAGATGTTCAGCACTGGTC | + |
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Preference number: 5 (lower is better) Translates to: HAGPAPVWTNPIQPKNSFYTVWS*RCSALV Trigger: GACCAGTGCTGAACATCTCAAGGACCAGACTGTGTA...AAAGGAGTTCTTTGGCTGGATTGGATTTGTCCAAACAGGTGCTGGCCCAGCATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR CAA 90 bp | ATCCAATCCAGCCAAAGAACTCCTTTCCCCGGCCAGCTGAGTATTTGGATGAACTCTGGGAGAAGATATTaGCTGTTGGAGCCACTCTGC | + |
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Preference number: 5 (lower is better) Translates to: IQSSQRTPFPGQLSIWMNSGRRY*LLEPLC Trigger: GCAGAGTGGCTCCAACAGCAAATATCTTCTCCCAGA...GTTCATCCAAATACTCAGCTGGCCGGGGAAAGGAGTTCTTTGGCTGGATTGGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR CAA 90 bp | TCATCGGATTCCATGCTGGGCCAGCACCTGTTTGGACAAATCCAATCCAGCCAAACAGGTTCACAGTATTaGGGGAAATTAAGCACTGCC | + |
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Preference number: 5 (lower is better) Translates to: SSDSMLGQHLFGQIQSSQTGSQY*GKLSTA Trigger: GGCAGTGCTTAATTTCCCCAAATACTGTGAACCTGT...TTGGCTGGATTGGATTTGTCCAAACAGGTGCTGGCCCAGCATGGAATCCGATGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR CAA 90 bp | GAGGGTTTTCATCGGATTCCATGCTGGGCCAGCACCTGTTTGGACAAATCCAATGATACACAGTCTGCATaGCCTTCTTCAGGTGAGGTT | + |
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Preference number: 5 (lower is better) Translates to: EGFHRIPCWASTCLDKSNDTQSA*PSSGEV Trigger: AACCTCACCTGAAGAAGGCAATGCAGACTGTGTATC...ATTGGATTTGTCCAAACAGGTGCTGGCCCAGCATGGAATCCGATGAAAACCCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR CAA 90 bp | CATGCTGGGCCAGCACCTGTTTGGACAAATCCAATCCAGCCAAAGAACTCCTTTGCCCAGGCAAAAGATTaGCTTCCATGTCTCTTAGAT | + |
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Preference number: 5 (lower is better) Translates to: HAGPAPVWTNPIQPKNSFAQAKD*LPCLLD Trigger: ATCTAAGAGACATGGAAGCAAATCTTTTGCCTGGGC...AAAGGAGTTCTTTGGCTGGATTGGATTTGTCCAAACAGGTGCTGGCCCAGCATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR CAA 90 bp | CTGTTTGGACAAATCCAATCCAGCCAAAGAACTCCTTTCCCCGGCCAGCTGAGTATGGGACAGGATCTTTaGAAGGTTTCCTATGCTATA | + |
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Preference number: 5 (lower is better) Translates to: LFGQIQSSQRTPFPGQLSMGQDL*KVSYAI Trigger: TATAGCATAGGAAACCTTCAAAAGATCCTGTCCCAT...ACTCAGCTGGCCGGGGAAAGGAGTTCTTTGGCTGGATTGGATTTGTCCAAACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR CAA 90 bp | ACTCCTTTCCCCGGCCAGCTGAGTATTTGGATGAACACAGCTTGGCTTAGTCATATATTTCTCCACAGTTaGCGAGTATCACGTTCACCT | + |
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Preference number: 5 (lower is better) Translates to: TPFPGQLSIWMNTAWLSHIFLHS*RVSRSP Trigger: AGGTGAACGTGATACTCGCAAACTGTGGAGAAATAT...ATGACTAAGCCAAGCTGTGTTCATCCAAATACTCAGCTGGCCGGGGAAAGGAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR CAA 90 bp | GTTAGACATGAAGCTGCTGTGTGCACAATGAACAAGCTGCCAGGTTTTGAGAAACCAGTGGAAAGGGCTTaGGTCCAAGAAGATGATTGC | + |
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Preference number: 5 (lower is better) Translates to: VRHEAAVCTMNKLPGFEKPVERA*VQEDDC Trigger: GCAATCATCTTCTTGGACCAAAGCCCTTTCCACTGG...TTTCTCAAAACCTGGCAGCTTGTTCATTGTGCACACAGCAGCTTCATGTCTAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS TCA 90 bp | CTTGAGATCTCCCTGAGATACACAGTCTGCATTGCCTTCTTCAGGTaGGGTTCAATATTTCTCCACAGTTTGCGAGTATCACGTTCACCT | + |
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Preference number: 5 (lower is better) Translates to: LEISLRYTVCIAFFR*GSIFLHSLRVSRSP Trigger: AGGTGAACGTGATACTCGCAAACTGTGGAGAAATATTGAACCTCACCTGAAGAAGGCAATGCAGACTGTGTATCTCAGGGAGATCTCAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030872.12 ENSMUST00000141263.3 |
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| CDS-3UTR CAA 90 bp | CCAATCAGAGGGTTTTCATCGGATTCCATGCTGGGCCAGCACCTGTTTGGACAACAAAGCATCCAGTATTaGGACGAAATTTTTCCCAAA | + |
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Preference number: 5 (lower is better) Translates to: PIRGFSSDSMLGQHLFGQQSIQY*DEIFPK Trigger: TTTGGGAAAAATTTCGTCCAAATACTGGATGCTTTG...TTGTCCAAACAGGTGCTGGCCCAGCATGGAATCCGATGAAAACCCTCTGATTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS-3UTR CAA 90 bp | GTCTTCTGCTCACAGCTACCCAGACCAATCAGAGGGTTTTCATCGGATTCCATGAGAGAAACTGTGCATTaGTATTTTGGCCCATTAAGT | + |
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Preference number: 5 (lower is better) Translates to: VFCSQLPRPIRGFSSDSMRETVH*YFGPLS Trigger: ACTTAATGGGCCAAAATACAAATGCACAGTTTCTCT...CATGGAATCCGATGAAAACCCTCTGATTGGTCTGGGTAGCTGTGAGCAGAAGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS CCA 90 bp | ATAAGAGGCAAGGTATGCAGCAATAAGAATAAACTTGGAGTAATATaGAAGTTCCATGTGGGTGTACGCCGAGAGACCTTTCAGTTGTCC | + |
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Preference number: 5 (lower is better) Translates to: IRGKVCSNKNKLGVI*KFHVGVRRETFQLS Trigger: GGACAACTGAAAGGTCTCTCGGCGTACACCCACATGGAACTTCCATATTACTCCAAGTTTATTCTTATTGCTGCATACCTTGCCTCTTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030872.12 ENSMUST00000141263.3 |
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| CDS-3UTR CAA 90 bp | TGCCAGGTTTTGAGAAAACTAGGTAAGAAGATAAACATACACAGCACATACTTTTCTGTCAGTCAATTCTaGCAGCCTAAGGAGCCCAGG | + |
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Preference number: 5 (lower is better) Translates to: CQVLRKLGKKINIHSTYFSVSQF*QPKEPR Trigger: CCTGGGCTCCTTAGGCTGCAAGAATTGACTGACAGA...AAAGTATGTGCTGTGTATGTTTATCTTCTTACCTAGTTTTCTCAAAACCTGGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS GCA 90 bp | GAAGAACCTCTTATCAGTTCTCGCTGGGTTATAAGAGGCAAGGTATaGAGCAATAAGAATAAACTTGGAGTAATATGGAAGTTCCATGTG | + |
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Preference number: 5 (lower is better) Translates to: EEPLISSRWVIRGKV*SNKNKLGVIWKFHV Trigger: CACATGGAACTTCCATATTACTCCAAGTTTATTCTTATTGCTGCATACCTTGCCTCTTATAACCCAGCGAGAACTGATAAGAGGTTCTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030872.12 ENSMUST00000141263.3 |
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| CDS TCA 90 bp | GTCTGGTCCTTGAGATGTTCAGCACTGGTCACTTGCTTAAATAACTaGACAAAGTCATTAAATGTTTCACAGGTCATTTCTGTAGAACAC | + |
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Preference number: 5 (lower is better) Translates to: VWSLRCSALVTCLNN*TKSLNVSQVISVEH Trigger: GTGTTCTACAGAAATGACCTGTGAAACATTTAATGACTTTGTTCAGTTATTTAAGCAAGTGACCAGTGCTGAACATCTCAAGGACCAGAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030872.12 ENSMUST00000141263.3 |
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| CDS TCA 90 bp | ATTGCTAATAATCTGTCCAGTGGAAAGGGCTTTGGTCCAAGAAGATaGTTGCTTGTCTTCTCATGCTTCTTTAGAAAGTTAGTCTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: IANNLSSGKGFGPRR*LLVFSCFFRKLVFL Trigger: CAAGAAGACTAACTTTCTAAAGAAGCATGAGAAGACAAGCAATCATCTTCTTGGACCAAAGCCCTTTCCACTGGACAGATTATTAGCAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS CAA 72 bp | ATGTCTCTCTCCAAACAGGGACTGCAAAGTGGACACTaGGGCCTCTCGACAGAGGACCATGCTCTCCAAGTG | + |
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Preference number: 6 (lower is better) Translates to: MSLSKQGLQSGH*GLSTEDHALQV Trigger: CACTTGGAGAGCATGGTCCTCTGTCGAGAGGCCCAAGTGTCCACTTTGCAGTCCCTGTTTGGAGAGAGACAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS TCA 72 bp | TCCCTGAGATACACAGTCTGCATTGCCTTCTTCAGGTaGGGTTCAATATTTCTCCACAGTTTGCGAGTATCA | + |
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Preference number: 6 (lower is better) Translates to: SLRYTVCIAFFR*GSIFLHSLRVS Trigger: TGATACTCGCAAACTGTGGAGAAATATTGAACCTCACCTGAAGAAGGCAATGCAGACTGTGTATCTCAGGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030872.12 ENSMUST00000141263.3 |
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| CDS CAA 72 bp | TTGGAGCCACTCTGCTGTCCACTATACTATACAATATaGCTAATAATCTGTCCAGTGGAAAGGGCTTTGGTC | + |
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Preference number: 6 (lower is better) Translates to: LEPLCCPLYYTI*LIICPVERALV Trigger: GACCAAAGCCCTTTCCACTGGACAGATTATTAGCAATATTGTATAGTATAGTGGACAGCAGAGTGGCTCCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS CCA 72 bp | AAGGTATGCAGCAATAAGAATAAACTTGGAGTAATATaGAAGTTCCATGTGGGTGTACGCCGAGAGACCTTT | + |
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Preference number: 6 (lower is better) Translates to: KVCSNKNKLGVI*KFHVGVRRETF Trigger: AAAGGTCTCTCGGCGTACACCCACATGGAACTTCCATATTACTCCAAGTTTATTCTTATTGCTGCATACCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030872.12 ENSMUST00000141263.3 |
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| CDS CAA 90 bp | TATTTGCTGTTGGAGCCACTCTGCTGTCCACTATACTATACAATATaGCTAATAATCTGTCCAGTGGAAAGGGCTTTGGTCCAAGAAGAT | + |
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Preference number: 6 (lower is better) Translates to: YLLLEPLCCPLYYTI*LIICPVERALVQED Trigger: ATCTTCTTGGACCAAAGCCCTTTCCACTGGACAGATTATTAGCAATATTGTATAGTATAGTGGACAGCAGAGTGGCTCCAACAGCAAATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS TCA 72 bp | AATCTGTCCAGTGGAAAGGGCTTTGGTCCAAGAAGATaGTTGCTTGTCTTCTCATGCTTCTTTAGAAAGTTA | + |
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Preference number: 6 (lower is better) Translates to: NLSSGKGFGPRR*LLVFSCFFRKL Trigger: TAACTTTCTAAAGAAGCATGAGAAGACAAGCAATCATCTTCTTGGACCAAAGCCCTTTCCACTGGACAGATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS CAA 72 bp | ACAATATTGCTAATAATCTGTCCAGTGGAAAGGGCTTaGGTCCAAGAAGATGATTGCTTGTCTTCTCATGCT | + |
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Preference number: 6 (lower is better) Translates to: TILLIICPVERA*VQEDDCLSSHA Trigger: AGCATGAGAAGACAAGCAATCATCTTCTTGGACCAAAGCCCTTTCCACTGGACAGATTATTAGCAATATTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS CAA 90 bp | CTATACTATACAATATTGCTAATAATCTGTCCAGTGGAAAGGGCTTaGGTCCAAGAAGATGATTGCTTGTCTTCTCATGCTTCTTTAGAA | + |
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Preference number: 6 (lower is better) Translates to: LYYTILLIICPVERA*VQEDDCLSSHASLE Trigger: TTCTAAAGAAGCATGAGAAGACAAGCAATCATCTTCTTGGACCAAAGCCCTTTCCACTGGACAGATTATTAGCAATATTGTATAGTATAG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030872.12 |
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| CDS TCA 72 bp | TTGAGATGTTCAGCACTGGTCACTTGCTTAAATAACTaGACAAAGTCATTAAATGTTTCACAGGTCATTTCT | + |
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Preference number: 6 (lower is better) Translates to: LRCSALVTCLNN*TKSLNVSQVIS Trigger: AGAAATGACCTGTGAAACATTTAATGACTTTGTTCAGTTATTTAAGCAAGTGACCAGTGCTGAACATCTCAA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030872.12 ENSMUST00000141263.3 |
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