Pregenerated sensors for ORC4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026761Ensembl transcript IDs: ENSMUST00000028098.11, ENSMUST00000090976.10, ENSMUST00000123271.2, ENSMUST00000142851.8, ENSMUST00000149679.8
Found 80 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TTGGCCCTTCTTGCCCATGACCATAGGCTTATTCTTAGTCACACATaGATCAGATTATGTGCTCTCAGGGTTAACAGTGAAGGCAACAAG | + |
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Preference number: 1 (lower is better) Translates to: LALLAHDHRLILSHT*IRLCALRVNSEGNK Trigger: CTTGTTGCCTTCACTGTTAACCCTGAGAGCACATAATCTGATGCATGTGTGACTAAGAATAAGCCTATGGTCATGGGCAAGAAGGGCCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| 3UTR TCA 90 bp | GCTTCGGTCTTGAGGTTTTCAAGGGTCATAAGATCAAGGAGGTTGTaGATTAGGGACTTTTCCTTACACCGTTGCTTGATCAGACTGTAT | + |
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Preference number: 1 (lower is better) Translates to: ASVLRFSRVIRSRRL*IRDFSLHRCLIRLY Trigger: ATACAGTCTGATCAAGCAACGGTGTAAGGAAAAGTCCCTAATTCACAACCTCCTTGATCTTATGACCCTTGAAAACCTCAAGACCGAAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| 3UTR CCA 90 bp | ACAAGTTCTTCAGCCCAAATGGGCCAGTTTACTAAACTAGAACACTaGGGGATCTGTAGAAGATCCAAAATTGGAGGATCCTATAGGAAC | + |
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Preference number: 1 (lower is better) Translates to: TSSSAQMGQFTKLEH*GICRRSKIGGSYRN Trigger: GTTCCTATAGGATCCTCCAATTTTGGATCTTCTACAGATCCCCCAGTGTTCTAGTTTAGTAAACTGGCCCATTTGGGCTGAAGAACTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| 3UTR CCA 90 bp | AAGAAAGACAGTACTGCAGGCACAGCAGTAAACAGAAAATGGACTTaGGAAATGTGTATCTCATCTGCATATGGAGTCTCGGACATGGAT | + |
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Preference number: 1 (lower is better) Translates to: KKDSTAGTAVNRKWT*EMCISSAYGVSDMD Trigger: ATCCATGTCCGAGACTCCATATGCAGATGAGATACACATTTCCCAAGTCCATTTTCTGTTTACTGCTGTGCCTGCAGTACTGTCTTTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090976.10 |
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| 3UTR GCA 90 bp | CACAGCAGTAAACAGAAAATGGACTTGGGAAATGTGTATCTCATCTaGATATGGAGTCTCGGACATGGATTACTCATGTCTTCCTTAGGT | + |
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Preference number: 1 (lower is better) Translates to: HSSKQKMDLGNVYLI*IWSLGHGLLMSSLG Trigger: ACCTAAGGAAGACATGAGTAATCCATGTCCGAGACTCCATATGCAGATGAGATACACATTTCCCAAGTCCATTTTCTGTTTACTGCTGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090976.10 |
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| 3UTR TCA 90 bp | GAGTCTCGGACATGGATTACTCATGTCTTCCTTAGGTCATTTATGTaGGGTAAACAGCTGAATGAGACATTTCCAACACTACAGTCTGAA | + |
|
Preference number: 1 (lower is better) Translates to: ESRTWITHVFLRSFM*GKQLNETFPTLQSE Trigger: TTCAGACTGTAGTGTTGGAAATGTCTCATTCAGCTGTTTACCTCACATAAATGACCTAAGGAAGACATGAGTAATCCATGTCCGAGACTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090976.10 |
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| 3UTR CCA 90 bp | AGTAAACAGAAAATGGACTTGGGAAATGTGTATCTCATCTGCATATaGAGTCTCGGACATGGATTACTCATGTCTTCCTTAGGTCATTTA | + |
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Preference number: 1 (lower is better) Translates to: SKQKMDLGNVYLICI*SLGHGLLMSSLGHL Trigger: TAAATGACCTAAGGAAGACATGAGTAATCCATGTCCGAGACTCCATATGCAGATGAGATACACATTTCCCAAGTCCATTTTCTGTTTACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090976.10 |
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| 3UTR CCA 90 bp | GCAGTGGATACCATGTCCTTACATTATAAGACGTTACCTAATGTATaGAAGTTTGGACAATGGATTTTAATTTTTCAGACACGTGTCTGC | + |
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Preference number: 1 (lower is better) Translates to: AVDTMSLHYKTLPNV*KFGQWILIFQTRVC Trigger: GCAGACACGTGTCTGAAAAATTAAAATCCATTGTCCAAACTTCCATACATTAGGTAACGTCTTATAATGTAAGGACATGGTATCCACTGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| 3UTR TCA 90 bp | AGACACAGAAAGCTAAGCATGTTTTACTGTGAAAGGGAAAGGCTGTaGATGAAGAAAGTTTTAACTATGAGGTACTACATTAATGCACAG | + |
|
Preference number: 1 (lower is better) Translates to: RHRKLSMFYCERERL*MKKVLTMRYYINAQ Trigger: CTGTGCATTAATGTAGTACCTCATAGTTAAAACTTTCTTCATTCACAGCCTTTCCCTTTCACAGTAAAACATGCTTAGCTTTCTGTGTCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| 3UTR CAA 90 bp | TCACTAGGCCACATGGAGGAAGGCTACATGGAAAGTCCTTTTTGTTaGTTCTTCCATCTCTTGGCCCAGTGGAGTCTTGAGCAGAGTGAA | + |
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Preference number: 2 (lower is better) Translates to: SLGHMEEGYMESPFC*FFHLLAQWSLEQSE Trigger: TTCACTCTGCTCAAGACTCCACTGGGCCAAGAGATGGAAGAACAAACAAAAAGGACTTTCCATGTAGCCTTCCTCCATGTGGCCTAGTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| 3UTR-3UTR TCA 90 bp | CAGCACAGAGCAAAGAGTGGTAAGATAAGAAAGACAGTACTGCAGGCACAGCAGTGTGAGGTAAACAGCTaGATGAGACATTTCCAACAC | + |
|
Preference number: 2 (lower is better) Translates to: QHRAKSGKIRKTVLQAQQCEVNS*MRHFQH Trigger: GTGTTGGAAATGTCTCATTCAGCTGTTTACCTCACA...CTGCTGTGCCTGCAGTACTGTCTTTCTTATCTTACCACTCTTTGCTCTGTGCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090976.10 |
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| 3UTR-3UTR CCA 90 bp | AGTCACTCACAGCAAAAGGCACACCATGGTAGAAAGTACCTCACTGGAGTAGAATGGAGGAAGGCTACATaGAAAGTCCTTTTTGTTTGT | + |
|
Preference number: 2 (lower is better) Translates to: SHSQQKAHHGRKYLTGVEWRKAT*KVLFVC Trigger: ACAAACAAAAAGGACTTTCCATGTAGCCTTCCTCCA...TTCTACTCCAGTGAGGTACTTTCTACCATGGTGTGCCTTTTGCTGTGAGTGACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| 3UTR CAA 90 bp | CCTACAATTGTGGTGAGATATGCAGAGAAGAAAATGATGAGTTGTTaGGACTCTTTCCACACAAGTTCTTCAGCCCAAATGGGCCAGTTT | + |
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Preference number: 2 (lower is better) Translates to: PTIVVRYAEKKMMSC*DSFHTSSSAQMGQF Trigger: AAACTGGCCCATTTGGGCTGAAGAACTTGTGTGGAAAGAGTCCAAACAACTCATCATTTTCTTCTCTGCATATCTCACCACAATTGTAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| 3UTR-3UTR TCA 90 bp | AGTCACTCACAGCAAAAGGCACACCATGGTAGAAAGTACCTCACTGGAGTAGAAATCCTACAATTGTGGTaGGATATGCAGAGAAGAAAA | + |
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Preference number: 2 (lower is better) Translates to: SHSQQKAHHGRKYLTGVEILQLW*DMQRRK Trigger: TTTTCTTCTCTGCATATCTCACCACAATTGTAGGAT...TTCTACTCCAGTGAGGTACTTTCTACCATGGTGTGCCTTTTGCTGTGAGTGACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| 3UTR-3UTR TCA 90 bp | AGTCACTCACAGCAAAAGGCACACCATGGTAGAAAGTACCTCACTGGAGTAGAAGTTAGATGGCAATTTTaGTCCCTTCTGAACATATAC | + |
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Preference number: 2 (lower is better) Translates to: SHSQQKAHHGRKYLTGVEVRWQF*SLLNIY Trigger: GTATATGTTCAGAAGGGATCAAAATTGCCATCTAAC...TTCTACTCCAGTGAGGTACTTTCTACCATGGTGTGCCTTTTGCTGTGAGTGACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| 3UTR-3UTR TCA 90 bp | GTTTCACTAGGCCACATGGAGGAAGGCTACATGGAAAGTCCTTTTTGTTTGTTCAAGCATGTTTTACTGTaGAAGGGAAAGGCTGTGAAT | + |
|
Preference number: 2 (lower is better) Translates to: VSLGHMEEGYMESPFCLFKHVLL*KGKAVN Trigger: ATTCACAGCCTTTCCCTTTCACAGTAAAACATGCTT...GAACAAACAAAAAGGACTTTCCATGTAGCCTTCCTCCATGTGGCCTAGTGAAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| 3UTR-3UTR TCA 90 bp | ATCCATGTTTCACTAGGCCACATGGAGGAAGGCTACATGGAAAGTCCTTTTTGTCTTGAGCAGAGTGAATaGATGAATTCTCTTCATTGC | + |
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Preference number: 2 (lower is better) Translates to: IHVSLGHMEEGYMESPFCLEQSE*MNSLHC Trigger: GCAATGAAGAGAATTCATTCATTCACTCTGCTCAAG...ACAAAAAGGACTTTCCATGTAGCCTTCCTCCATGTGGCCTAGTGAAACATGGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| 3UTR-3UTR GCA 90 bp | TGGCCCTTCTTGCCCATGACCATAGGCTTATTCTTAGTCACACATGCATCAGATTTTCAGACACGTGTCTaGATAAAATCAGATGCCTTT | + |
|
Preference number: 2 (lower is better) Translates to: WPFLPMTIGLFLVTHASDFQTRV*IKSDAF Trigger: AAAGGCATCTGATTTTATGCAGACACGTGTCTGAAA...ATCTGATGCATGTGTGACTAAGAATAAGCCTATGGTCATGGGCAAGAAGGGCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| 3UTR-3UTR CCA 90 bp | TGGCCCTTCTTGCCCATGACCATAGGCTTATTCTTAGTCACACATGCATCAGATGTAGTTGAGATAGCTTaGGCTAGTTTGGAAATGTTT | + |
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Preference number: 2 (lower is better) Translates to: WPFLPMTIGLFLVTHASDVVEIA*ASLEMF Trigger: AAACATTTCCAAACTAGCCCAAGCTATCTCAACTAC...ATCTGATGCATGTGTGACTAAGAATAAGCCTATGGTCATGGGCAAGAAGGGCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| 3UTR-3UTR CCA 90 bp | CAGCACAGAGCAAAGAGTGGTAAGATAAGAAAGACAGTACTGCAGGCACAGCAGAACAGAAAATGGACTTaGGAAATGTGTATCTCATCT | + |
|
Preference number: 2 (lower is better) Translates to: QHRAKSGKIRKTVLQAQQNRKWT*EMCISS Trigger: AGATGAGATACACATTTCCCAAGTCCATTTTCTGTT...CTGCTGTGCCTGCAGTACTGTCTTTCTTATCTTACCACTCTTTGCTCTGTGCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090976.10 |
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| 3UTR CAA 90 bp | AAATCCTACAATTGTGGTGAGATATGCAGAGAAGAAAATGATGAGTaGTTTGGACTCTTTCCACACAAGTTCTTCAGCCCAAATGGGCCA | + |
|
Preference number: 2 (lower is better) Translates to: KSYNCGEICREENDE*FGLFPHKFFSPNGP Trigger: TGGCCCATTTGGGCTGAAGAACTTGTGTGGAAAGAGTCCAAACAACTCATCATTTTCTTCTCTGCATATCTCACCACAATTGTAGGATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| 3UTR-3UTR TCA 90 bp | GTTTCACTAGGCCACATGGAGGAAGGCTACATGGAAAGTCCTTTTTGTTTGTTCCACATTTTATTCTTATaGACTGCTACTTGTGTGGTG | + |
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Preference number: 2 (lower is better) Translates to: VSLGHMEEGYMESPFCLFHILFL*TATCVV Trigger: CACCACACAAGTAGCAGTTCATAAGAATAAAATGTG...GAACAAACAAAAAGGACTTTCCATGTAGCCTTCCTCCATGTGGCCTAGTGAAAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| 3UTR-3UTR TCA 90 bp | GCTGTATTCAGATCACTGCAGCACAGAGCAAAGAGTGGTAAGATAAGAAAGACACTTAGGTCATTTATGTaGGGTAAACAGCTGAATGAG | + |
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Preference number: 2 (lower is better) Translates to: AVFRSLQHRAKSGKIRKTLRSFM*GKQLNE Trigger: CTCATTCAGCTGTTTACCTCACATAAATGACCTAAG...TGTCTTTCTTATCTTACCACTCTTTGCTCTGTGCTGCAGTGATCTGAATACAGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090976.10 |
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| 3UTR-3UTR CCA 90 bp | GTTTCACTAGGCCACATGGAGGAAGGCTACATGGAAAGTCCTTTTTGTTTGTTCAACTGTGTCCATGCGTaGTCATTATTCAAAACATAC | + |
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Preference number: 2 (lower is better) Translates to: VSLGHMEEGYMESPFCLFNCVHA*SLFKTY Trigger: GTATGTTTTGAATAATGACCACGCATGGACACAGTT...GAACAAACAAAAAGGACTTTCCATGTAGCCTTCCTCCATGTGGCCTAGTGAAAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| 3UTR-3UTR GCA 90 bp | GTTTCACTAGGCCACATGGAGGAAGGCTACATGGAAAGTCCTTTTTGTTTGTTCAGTATATACCTTTCTTaGTTCTACTCTTGTGGAATC | + |
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Preference number: 2 (lower is better) Translates to: VSLGHMEEGYMESPFCLFSIYLS*FYSCGI Trigger: GATTCCACAAGAGTAGAAGCAAGAAAGGTATATACT...GAACAAACAAAAAGGACTTTCCATGTAGCCTTCCTCCATGTGGCCTAGTGAAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| 3UTR-3UTR GCA 90 bp | GACTTTATTTCTCAACAGTTTGTAGAGCAGGAAAGGAGAAAATATAGTTGGCTCCTGTATTCAGATCACTaGAGCACAGAGCAAAGAGTG | + |
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Preference number: 2 (lower is better) Translates to: DFISQQFVEQERRKYSWLLYSDH*STEQRV Trigger: CACTCTTTGCTCTGTGCTGCAGTGATCTGAATACAG...GAGCCAACTATATTTTCTCCTTTCCTGCTCTACAAACTGTTGAGAAATAAAGTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090976.10 |
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| 3UTR-3UTR CCA 90 bp | TATGAATTTATGTTGTTAAAGAGGGTAATGAGAGCTTTCCAACTTATGGTCAGGTTGCTTCTACTCTTGTaGAATCACATGTTAAAGCCA | + |
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Preference number: 2 (lower is better) Translates to: YEFMLLKRVMRAFQLMVRLLLLL*NHMLKP Trigger: TGGCTTTAACATGTGATTCCACAAGAGTAGAAGCAA...CCTGACCATAAGTTGGAAAGCTCTCATTACCCTCTTTAACAACATAAATTCATA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| 3UTR-3UTR CCA 90 bp | GACTTTCATGATAATCACAATAGCCGTGATTGGAATGAGATTGTAATACAACTGGCAGTAAACAGAAAATaGACTTGGGAAATGTGTATC | + |
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Preference number: 2 (lower is better) Translates to: DFHDNHNSRDWNEIVIQLAVNRK*TWEMCI Trigger: GATACACATTTCCCAAGTCCATTTTCTGTTTACTGC...CAGTTGTATTACAATCTCATTCCAATCACGGCTATTGTGATTATCATGAAAGTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090976.10 |
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| 3UTR GCA 72 bp | GTGCTCTCAGGGTTAACAGTGAAGGCAACAAGAACCTaGACTGTTAAGTCACTCACAGCAAAAGGCACACCA | + |
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Preference number: 3 (lower is better) Translates to: VLSGLTVKATRT*TVKSLTAKGTP Trigger: TGGTGTGCCTTTTGCTGTGAGTGACTTAACAGTGCAGGTTCTTGTTGCCTTCACTGTTAACCCTGAGAGCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| 3UTR CCA 72 bp | AGTACTGCAGGCACAGCAGTAAACAGAAAATGGACTTaGGAAATGTGTATCTCATCTGCATATGGAGTCTCG | + |
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Preference number: 3 (lower is better) Translates to: STAGTAVNRKWT*EMCISSAYGVS Trigger: CGAGACTCCATATGCAGATGAGATACACATTTCCCAAGTCCATTTTCTGTTTACTGCTGTGCCTGCAGTACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090976.10 |
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| 3UTR CCA 72 bp | CTTGATCAGACTGTATTTCTACCCAAGTGTCTATGTTaGCCCTTCTTGCCCATGACCATAGGCTTATTCTTA | + |
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Preference number: 3 (lower is better) Translates to: LDQTVFLPKCLC*PFLPMTIGLFL Trigger: TAAGAATAAGCCTATGGTCATGGGCAAGAAGGGCCAACATAGACACTTGGGTAGAAATACAGTCTGATCAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| 3UTR TCA 72 bp | GGTTGTGAATTAGGGACTTTTCCTTACACCGTTGCTTaGTCAGACTGTATTTCTACCCAAGTGTCTATGTTG | + |
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Preference number: 3 (lower is better) Translates to: GCELGTFPYTVA*SDCISTQVSML Trigger: CAACATAGACACTTGGGTAGAAATACAGTCTGATCAAGCAACGGTGTAAGGAAAAGTCCCTAATTCACAACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| 3UTR-3UTR CAA 90 bp | TATGAATTTATGTTGTTAAAGAGGGTAATGAGAGCTTTCCAACTTATGGTCAGGCTATGTTGGCCCTTCTaGCCCATGACCATAGGCTTA | + |
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Preference number: 3 (lower is better) Translates to: YEFMLLKRVMRAFQLMVRLCWPF*PMTIGL Trigger: TAAGCCTATGGTCATGGGCAAGAAGGGCCAACATAG...CCTGACCATAAGTTGGAAAGCTCTCATTACCCTCTTTAACAACATAAATTCATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| 3UTR GCA 72 bp | AAACAGAAAATGGACTTGGGAAATGTGTATCTCATCTaGATATGGAGTCTCGGACATGGATTACTCATGTCT | + |
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Preference number: 3 (lower is better) Translates to: KQKMDLGNVYLI*IWSLGHGLLMS Trigger: AGACATGAGTAATCCATGTCCGAGACTCCATATGCAGATGAGATACACATTTCCCAAGTCCATTTTCTGTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090976.10 |
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| 3UTR TCA 72 bp | CAGGAATCCTTTAAGGTACCTGTTAGATGGCAATTTTaGTCCCTTCTGAACATATACAAAGAATGTACATGG | + |
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Preference number: 3 (lower is better) Translates to: QESFKVPVRWQF*SLLNIYKECTW Trigger: CCATGTACATTCTTTGTATATGTTCAGAAGGGATCAAAATTGCCATCTAACAGGTACCTTAAAGGATTCCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| 3UTR-3UTR CAA 90 bp | GACTTTATTTCTCAACAGTTTGTAGAGCAGGAAAGGAGAAAATATAGTTGGCTCAAACAGAAAATGGACTaGGGAAATGTGTATCTCATC | + |
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Preference number: 3 (lower is better) Translates to: DFISQQFVEQERRKYSWLKQKMD*GNVYLI Trigger: GATGAGATACACATTTCCCAAGTCCATTTTCTGTTT...GAGCCAACTATATTTTCTCCTTTCCTGCTCTACAAACTGTTGAGAAATAAAGTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090976.10 |
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| 3UTR TCA 72 bp | AAGCTAAGCATGTTTTACTGTGAAAGGGAAAGGCTGTaGATGAAGAAAGTTTTAACTATGAGGTACTACATT | + |
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Preference number: 3 (lower is better) Translates to: KLSMFYCERERL*MKKVLTMRYYI Trigger: AATGTAGTACCTCATAGTTAAAACTTTCTTCATTCACAGCCTTTCCCTTTCACAGTAAAACATGCTTAGCTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS-3UTR GCA 90 bp | GATCCAAAATTGGAGGATCCTATAGGAACCAATTCAGGAAAATCAACCCAACTCGAGGATGTTGCCCACTaGCTAACATCTGTAGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: DPKLEDPIGTNSGKSTQLEDVAH*LTSVGQ Trigger: CTGCCCTACAGATGTTAGGCAGTGGGCAACATCCTC...GAGTTGGGTTGATTTTCCTGAATTGGTTCCTATAGGATCCTCCAATTTTGGATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS-3UTR TCA 90 bp | AGTCACTCACAGCAAAAGGCACACCATGGTAGAAAGTACCTCACTGGAGTAGAAAAATGTATCTGCCGGTaGGAAAATCGTGACTTCACT | + |
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Preference number: 4 (lower is better) Translates to: SHSQQKAHHGRKYLTGVEKCICR*ENRDFT Trigger: AGTGAAGTCACGATTTTCTCACCGGCAGATACATTT...TTCTACTCCAGTGAGGTACTTTCTACCATGGTGTGCCTTTTGCTGTGAGTGACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS-3UTR TCA 90 bp | AGTCACTCACAGCAAAAGGCACACCATGGTAGAAAGTACCTCACTGGAGTAGAATCTTCAGAGAGACAGTaGACATTCTCATTCCATCTC | + |
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Preference number: 4 (lower is better) Translates to: SHSQQKAHHGRKYLTGVESSERQ*TFSFHL Trigger: GAGATGGAATGAGAATGTTCACTGTCTCTCTGAAGA...TTCTACTCCAGTGAGGTACTTTCTACCATGGTGTGCCTTTTGCTGTGAGTGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| 3UTR CAA 72 bp | AATGAGAGCTTTCCAACTTATGGTCAGGCTTCGGTCTaGAGGTTTTCAAGGGTCATAAGATCAAGGAGGTTG | + |
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Preference number: 4 (lower is better) Translates to: NESFPTYGQASV*RFSRVIRSRRL Trigger: CAACCTCCTTGATCTTATGACCCTTGAAAACCTCAAGACCGAAGCCTGACCATAAGTTGGAAAGCTCTCATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS-3UTR TCA 90 bp | TGGCCCTTCTTGCCCATGACCATAGGCTTATTCTTAGTCACACATGCATCAGATTCTCTGAGAATTTACTaGAGTTCTTTCCACGGGTTT | + |
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Preference number: 4 (lower is better) Translates to: WPFLPMTIGLFLVTHASDSLRIY*SSFHGF Trigger: AAACCCGTGGAAAGAACTTCAGTAAATTCTCAGAGA...ATCTGATGCATGTGTGACTAAGAATAAGCCTATGGTCATGGGCAAGAAGGGCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS-3UTR GCA 90 bp | TGGCCCTTCTTGCCCATGACCATAGGCTTATTCTTAGTCACACATGCATCAGATTGCTACTGGTGTCTGTaGAGATTGAGAAATGTCAAA | + |
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Preference number: 4 (lower is better) Translates to: WPFLPMTIGLFLVTHASDCYWCL*RLRNVK Trigger: TTTGACATTTCTCAATCTGCACAGACACCAGTAGCA...ATCTGATGCATGTGTGACTAAGAATAAGCCTATGGTCATGGGCAAGAAGGGCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS-3UTR GCA 90 bp | ATCCATGTTTCACTAGGCCACATGGAGGAAGGCTACATGGAAAGTCCTTTTTGTTGTAAGTCCAATAACTaGTACTGGTGTCTGTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: IHVSLGHMEEGYMESPFCCKSNN*YWCLCR Trigger: TCTGCACAGACACCAGTAGCAGTTATTGGACTTACA...ACAAAAAGGACTTTCCATGTAGCCTTCCTCCATGTGGCCTAGTGAAACATGGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS-3UTR GCA 90 bp | ATCCATGTTTCACTAGGCCACATGGAGGAAGGCTACATGGAAAGTCCTTTTTGTTCCAACTGTTGTAAGTaGTCAAATGCCTTCATGACC | + |
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Preference number: 4 (lower is better) Translates to: IHVSLGHMEEGYMESPFCSNCCK*SNAFMT Trigger: GGTCATGAAGGCATTTGAGCACTTACAACAGTTGGA...ACAAAAAGGACTTTCCATGTAGCCTTCCTCCATGTGGCCTAGTGAAACATGGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS-3UTR CCA 90 bp | GTTTCACTAGGCCACATGGAGGAAGGCTACATGGAAAGTCCTTTTTGTTTGTTCTCCAATAACTGCTACTaGTGTCTGTGCAGATTGAGA | + |
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Preference number: 4 (lower is better) Translates to: VSLGHMEEGYMESPFCLFSNNCY*CLCRLR Trigger: TCTCAATCTGCACAGACACCAGTAGCAGTTATTGGA...GAACAAACAAAAAGGACTTTCCATGTAGCCTTCCTCCATGTGGCCTAGTGAAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| 3UTR CAA 72 bp | ACTGTATTTCTACCCAAGTGTCTATGTTGGCCCTTCTaGCCCATGACCATAGGCTTATTCTTAGTCACACAT | + |
|
Preference number: 4 (lower is better) Translates to: TVFLPKCLCWPF*PMTIGLFLVTH Trigger: ATGTGTGACTAAGAATAAGCCTATGGTCATGGGCAAGAAGGGCCAACATAGACACTTGGGTAGAAATACAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS-3UTR TCA 90 bp | GTTTCACTAGGCCACATGGAGGAAGGCTACATGGAAAGTCCTTTTTGTTTGTTCAGCTTCCAGAAGAAATaGAAGGTTTTCAGCAAAGCT | + |
|
Preference number: 4 (lower is better) Translates to: VSLGHMEEGYMESPFCLFSFQKK*KVFSKA Trigger: AGCTTTGCTGAAAACCTTTCATTTCTTCTGGAAGCT...GAACAAACAAAAAGGACTTTCCATGTAGCCTTCCTCCATGTGGCCTAGTGAAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS-3UTR TCA 90 bp | GATCCAAAATTGGAGGATCCTATAGGAACCAATTCAGGAAAATCAACCCAACTCCAAATTCATCCAGTATaGAGATCACTGGGCAACTGC | + |
|
Preference number: 4 (lower is better) Translates to: DPKLEDPIGTNSGKSTQLQIHPV*RSLGNC Trigger: GCAGTTGCCCAGTGATCTTCATACTGGATGAATTTG...GAGTTGGGTTGATTTTCCTGAATTGGTTCCTATAGGATCCTCCAATTTTGGATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS-3UTR TCA 90 bp | TGGCCCTTCTTGCCCATGACCATAGGCTTATTCTTAGTCACACATGCATCAGATGGTGTCTGTGCAGATTaGGAAATGTCAAAAAGATTA | + |
|
Preference number: 4 (lower is better) Translates to: WPFLPMTIGLFLVTHASDGVCAD*EMSKRL Trigger: TAATCTTTTTGACATTTCTCAATCTGCACAGACACC...ATCTGATGCATGTGTGACTAAGAATAAGCCTATGGTCATGGGCAAGAAGGGCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS-3UTR TCA 90 bp | AGTCACTCACAGCAAAAGGCACACCATGGTAGAAAGTACCTCACTGGAGTAGAAAGCTGGTATTCTCTCTaGGAATTTACTGAAGTTCTT | + |
|
Preference number: 4 (lower is better) Translates to: SHSQQKAHHGRKYLTGVESWYSL*EFTEVL Trigger: AAGAACTTCAGTAAATTCTCAGAGAGAATACCAGCT...TTCTACTCCAGTGAGGTACTTTCTACCATGGTGTGCCTTTTGCTGTGAGTGACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS-3UTR GCA 90 bp | TGGCCCTTCTTGCCCATGACCATAGGCTTATTCTTAGTCACACATGCATCAGATAGCATGTGTAATGACTaGAAGTTTTTGTTGACACTG | + |
|
Preference number: 4 (lower is better) Translates to: WPFLPMTIGLFLVTHASDSMCND*KFLLTL Trigger: CAGTGTCAACAAAAACTTGCAGTCATTACACATGCT...ATCTGATGCATGTGTGACTAAGAATAAGCCTATGGTCATGGGCAAGAAGGGCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS-3UTR CCA 90 bp | TGGCCCTTCTTGCCCATGACCATAGGCTTATTCTTAGTCACACATGCATCAGATCATGATTTAATAATGTaGTCTTTCCTGATCCTCGTG | + |
|
Preference number: 4 (lower is better) Translates to: WPFLPMTIGLFLVTHASDHDLIM*SFLILV Trigger: CACGAGGATCAGGAAAGACCACATTATTAAATCATG...ATCTGATGCATGTGTGACTAAGAATAAGCCTATGGTCATGGGCAAGAAGGGCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS-3UTR TCA 90 bp | GAAGAAAATGATGAGTTGTTTGGACTCTTTCCACACAAGTTCTTCAGCCCAAATGACTTCAAGCACAGTTaGATCTTCAGAGAGACAGTG | + |
|
Preference number: 4 (lower is better) Translates to: EENDELFGLFPHKFFSPNDFKHS*IFRETV Trigger: CACTGTCTCTCTGAAGATTCAACTGTGCTTGAAGTC...ATTTGGGCTGAAGAACTTGTGTGGAAAGAGTCCAAACAACTCATCATTTTCTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS-3UTR GCA 90 bp | CAGAAAATGGACTTGGGAAATGTGTATCTCATCTGCATATGGAGTCTCGGACATAAGACACTCTGCATGTaGATTACTCTTGGTTTTACG | + |
|
Preference number: 4 (lower is better) Translates to: QKMDLGNVYLICIWSLGHKTLCM*ITLGFT Trigger: CGTAAAACCAAGAGTAATGCACATGCAGAGTGTCTT...ATGTCCGAGACTCCATATGCAGATGAGATACACATTTCCCAAGTCCATTTTCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090976.10 |
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| CDS-3UTR CCA 90 bp | TGGCCCTTCTTGCCCATGACCATAGGCTTATTCTTAGTCACACATGCATCAGATAAAGAGGTTGCTATGTaGACTATGATGACAAAATCT | + |
|
Preference number: 4 (lower is better) Translates to: WPFLPMTIGLFLVTHASDKEVAM*TMMTKS Trigger: AGATTTTGTCATCATAGTCCACATAGCAACCTCTTT...ATCTGATGCATGTGTGACTAAGAATAAGCCTATGGTCATGGGCAAGAAGGGCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS-3UTR GCA 90 bp | GATCCAAAATTGGAGGATCCTATAGGAACCAATTCAGGAAAATCAACCCAACTCAAGACACTCTGCATGTaGATTACTCTTGGTTTTACG | + |
|
Preference number: 4 (lower is better) Translates to: DPKLEDPIGTNSGKSTQLKTLCM*ITLGFT Trigger: CGTAAAACCAAGAGTAATGCACATGCAGAGTGTCTT...GAGTTGGGTTGATTTTCCTGAATTGGTTCCTATAGGATCCTCCAATTTTGGATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS-3UTR GCA 90 bp | CAGAAAATGGACTTGGGAAATGTGTATCTCATCTGCATATGGAGTCTCGGACATAGTAGCTCAATCAAATaGTTGTATTGTACTTGCACT | + |
|
Preference number: 4 (lower is better) Translates to: QKMDLGNVYLICIWSLGHSSSIK*LYCTCT Trigger: AGTGCAAGTACAATACAAGCATTTGATTGAGCTACT...ATGTCCGAGACTCCATATGCAGATGAGATACACATTTCCCAAGTCCATTTTCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090976.10 |
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| CDS-3UTR GCA 90 bp | GATCCAAAATTGGAGGATCCTATAGGAACCAATTCAGGAAAATCAACCCAACTCAGTAGCTCAATCAAATaGTTGTATTGTACTTGCACT | + |
|
Preference number: 4 (lower is better) Translates to: DPKLEDPIGTNSGKSTQLSSSIK*LYCTCT Trigger: AGTGCAAGTACAATACAAGCATTTGATTGAGCTACT...GAGTTGGGTTGATTTTCCTGAATTGGTTCCTATAGGATCCTCCAATTTTGGATC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS-3UTR CCA 90 bp | GACTTTATTTCTCAACAGTTTGTAGAGCAGGAAAGGAGAAAATATAGTTGGCTCCATGATTTAATAATGTaGTCTTTCCTGATCCTCGTG | + |
|
Preference number: 4 (lower is better) Translates to: DFISQQFVEQERRKYSWLHDLIM*SFLILV Trigger: CACGAGGATCAGGAAAGACCACATTATTAAATCATG...GAGCCAACTATATTTTCTCCTTTCCTGCTCTACAAACTGTTGAGAAATAAAGTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090976.10 |
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| CDS-3UTR CCA 90 bp | GACTTTATTTCTCAACAGTTTGTAGAGCAGGAAAGGAGAAAATATAGTTGGCTCAAAGAGGTTGCTATGTaGACTATGATGACAAAATCT | + |
|
Preference number: 4 (lower is better) Translates to: DFISQQFVEQERRKYSWLKEVAM*TMMTKS Trigger: AGATTTTGTCATCATAGTCCACATAGCAACCTCTTT...GAGCCAACTATATTTTCTCCTTTCCTGCTCTACAAACTGTTGAGAAATAAAGTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090976.10 |
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| CDS-3UTR CAA 90 bp | AGTCACTCACAGCAAAAGGCACACCATGGTAGAAAGTACCTCACTGGAGTAGAAAGTCCGGTCACCTTTTaGCAAAGCTTCCAGAAGAAA | + |
|
Preference number: 5 (lower is better) Translates to: SHSQQKAHHGRKYLTGVESPVTF*QSFQKK Trigger: TTTCTTCTGGAAGCTTTGCAAAAAGGTGACCGGACT...TTCTACTCCAGTGAGGTACTTTCTACCATGGTGTGCCTTTTGCTGTGAGTGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS-3UTR CAA 90 bp | AGTCACTCACAGCAAAAGGCACACCATGGTAGAAAGTACCTCACTGGAGTAGAAACATCTGTAGGGCAGTaGGAGTATTTCTGTAGAGCA | + |
|
Preference number: 5 (lower is better) Translates to: SHSQQKAHHGRKYLTGVETSVGQ*EYFCRA Trigger: TGCTCTACAGAAATACTCCAACTGCCCTACAGATGT...TTCTACTCCAGTGAGGTACTTTCTACCATGGTGTGCCTTTTGCTGTGAGTGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS GCA 90 bp | GACAGACCATGTACAATATTCGCCTTAGAATCCAAGCTACACATATaGTGTGCCTCCATCAGATCTGCTGAAGTCATAAATGGGTGTGAT | + |
|
Preference number: 5 (lower is better) Translates to: DRPCTIFALESKLHI*CASIRSAEVINGCD Trigger: ATCACACCCATTTATGACTTCAGCAGATCTGATGGAGGCACAGCATATGTGTAGCTTGGATTCTAAGGCGAATATTGTACATGGTCTGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS-3UTR CAA 90 bp | GTTGTGGAAGTAGATGCCCAGGAATCCTTTAAGGTACCTGTTAGATGGCAATTTGGACTTCAAGCACAGTaGAATCTTCAGAGAGACAGT | + |
|
Preference number: 5 (lower is better) Translates to: VVEVDAQESFKVPVRWQFGLQAQ*NLQRDS Trigger: ACTGTCTCTCTGAAGATTCAACTGTGCTTGAAGTCC...AAATTGCCATCTAACAGGTACCTTAAAGGATTCCTGGGCATCTACTTCCACAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS-3UTR CAA 90 bp | CAGAAAATGGACTTGGGAAATGTGTATCTCATCTGCATATGGAGTCTCGGACATATGCTTGTATTGTACTaGCACTCCAAAGAGGTTGCT | + |
|
Preference number: 5 (lower is better) Translates to: QKMDLGNVYLICIWSLGHMLVLY*HSKEVA Trigger: AGCAACCTCTTTGGAGTGCAAGTACAATACAAGCAT...ATGTCCGAGACTCCATATGCAGATGAGATACACATTTCCCAAGTCCATTTTCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090976.10 |
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| CDS-3UTR CAA 90 bp | TGGCCCTTCTTGCCCATGACCATAGGCTTATTCTTAGTCACACATGCATCAGATGACTGCAAGTTTTTGTaGACACTGAAATGTTTCTGT | + |
|
Preference number: 5 (lower is better) Translates to: WPFLPMTIGLFLVTHASDDCKFL*TLKCFC Trigger: ACAGAAACATTTCAGTGTCAACAAAAACTTGCAGTC...ATCTGATGCATGTGTGACTAAGAATAAGCCTATGGTCATGGGCAAGAAGGGCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS-3UTR CAA 90 bp | GAAGAAAATGATGAGTTGTTTGGACTCTTTCCACACAAGTTCTTCAGCCCAAATATGCTTGTATTGTACTaGCACTCCAAAGAGGTTGCT | + |
|
Preference number: 5 (lower is better) Translates to: EENDELFGLFPHKFFSPNMLVLY*HSKEVA Trigger: AGCAACCTCTTTGGAGTGCAAGTACAATACAAGCAT...ATTTGGGCTGAAGAACTTGTGTGGAAAGAGTCCAAACAACTCATCATTTTCTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS-3UTR CAA 90 bp | GCTGTATTCAGATCACTGCAGCACAGAGCAAAGAGTGGTAAGATAAGAAAGACAAATCAAATGCTTGTATaGTACTTGCACTCCAAAGAG | + |
|
Preference number: 5 (lower is better) Translates to: AVFRSLQHRAKSGKIRKTNQMLV*YLHSKE Trigger: CTCTTTGGAGTGCAAGTACAATACAAGCATTTGATT...TGTCTTTCTTATCTTACCACTCTTTGCTCTGTGCTGCAGTGATCTGAATACAGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090976.10 |
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| CDS-3UTR CAA 90 bp | GATCCAAAATTGGAGGATCCTATAGGAACCAATTCAGGAAAATCAACCCAACTCAATCAAATGCTTGTATaGTACTTGCACTCCAAAGAG | + |
|
Preference number: 5 (lower is better) Translates to: DPKLEDPIGTNSGKSTQLNQMLV*YLHSKE Trigger: CTCTTTGGAGTGCAAGTACAATACAAGCATTTGATT...GAGTTGGGTTGATTTTCCTGAATTGGTTCCTATAGGATCCTCCAATTTTGGATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS-3UTR CAA 90 bp | GAAGAAAATGATGAGTTGTTTGGACTCTTTCCACACAAGTTCTTCAGCCCAAATAGCTCAATCAAATGCTaGTATTGTACTTGCACTCCA | + |
|
Preference number: 5 (lower is better) Translates to: EENDELFGLFPHKFFSPNSSIKC*YCTCTP Trigger: TGGAGTGCAAGTACAATACAAGCATTTGATTGAGCT...ATTTGGGCTGAAGAACTTGTGTGGAAAGAGTCCAAACAACTCATCATTTTCTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS GCA 90 bp | GTAGCTCAATCAAATGCTTGTATTGTACTTGCACTCCAAAGAGGTTaGTATGTGGACTATGATGACAAAATCTTTCACGTAAAATTCTTT | + |
|
Preference number: 5 (lower is better) Translates to: VAQSNACIVLALQRG*YVDYDDKIFHVKFF Trigger: AAAGAATTTTACGTGAAAGATTTTGTCATCATAGTCCACATAGCAACCTCTTTGGAGTGCAAGTACAATACAAGCATTTGATTGAGCTAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000028098.11 ENSMUST00000090976.10 ENSMUST00000123271.2 ENSMUST00000142851.8 ENSMUST00000149679.8 |
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| CDS CCA 90 bp | GAGTTCCAAAATATCCAATCTACATGTAAGTCCAATAACTGCTACTaGTGTCTGTGCAGATTGAGAAATGTCAAAAAGATTATAAAGGAG | + |
|
Preference number: 5 (lower is better) Translates to: EFQNIQSTCKSNNCY*CLCRLRNVKKIIKE Trigger: CTCCTTTATAATCTTTTTGACATTTCTCAATCTGCACAGACACCAGTAGCAGTTATTGGACTTACATGTAGATTGGATATTTTGGAACTC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028098.11 ENSMUST00000142851.8 |
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| CDS CCA 72 bp | AGCAAAAATATCAAATTCATCCAGTATGAAGATCACTaGGCAACTGCTAGTCCGGTCACCTTTTTGCAAAGC | + |
|
Preference number: 6 (lower is better) Translates to: SKNIKFIQYEDH*ATASPVTFLQS Trigger: GCTTTGCAAAAAGGTGACCGGACTAGCAGTTGCCCAGTGATCTTCATACTGGATGAATTTGATATTTTTGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000028098.11 ENSMUST00000142851.8 |
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| CDS GCA 72 bp | TGTACAATATTCGCCTTAGAATCCAAGCTACACATATaGTGTGCCTCCATCAGATCTGCTGAAGTCATAAAT | + |
|
Preference number: 6 (lower is better) Translates to: CTIFALESKLHI*CASIRSAEVIN Trigger: ATTTATGACTTCAGCAGATCTGATGGAGGCACAGCATATGTGTAGCTTGGATTCTAAGGCGAATATTGTACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS GCA 72 bp | CTTTCCACGGGTTTTATTAATTCCAACTGTTGTAAGTaGTCAAATGCCTTCATGACCACAGGTTTCTCAAAG | + |
|
Preference number: 6 (lower is better) Translates to: LSTGFINSNCCK*SNAFMTTGFSK Trigger: CTTTGAGAAACCTGTGGTCATGAAGGCATTTGAGCACTTACAACAGTTGGAATTAATAAAACCCGTGGAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS GCA 72 bp | TCAAATGCTTGTATTGTACTTGCACTCCAAAGAGGTTaGTATGTGGACTATGATGACAAAATCTTTCACGTA | + |
|
Preference number: 6 (lower is better) Translates to: SNACIVLALQRG*YVDYDDKIFHV Trigger: TACGTGAAAGATTTTGTCATCATAGTCCACATAGCAACCTCTTTGGAGTGCAAGTACAATACAAGCATTTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000028098.11 ENSMUST00000090976.10 ENSMUST00000123271.2 ENSMUST00000142851.8 ENSMUST00000149679.8 |
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| CDS CAA 90 bp | TTTAAAGCAAGCATCAATAGCATGTGTAATGACTGCAAGTTTTTGTaGACACTGAAATGTTTCTGTAGGACTTCAAGCACAGTTGAATCT | + |
|
Preference number: 6 (lower is better) Translates to: FKASINSMCNDCKFL*TLKCFCRTSSTVES Trigger: AGATTCAACTGTGCTTGAAGTCCTACAGAAACATTTCAGTGTCAACAAAAACTTGCAGTCATTACACATGCTATTGATGCTTGCTTTAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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| CDS GCA 72 bp | TTCCAAAATATCCAATCTACATGTAAGTCCAATAACTaGTACTGGTGTCTGTGCAGATTGAGAAATGTCAAA | + |
|
Preference number: 6 (lower is better) Translates to: FQNIQSTCKSNN*YWCLCRLRNVK Trigger: TTTGACATTTCTCAATCTGCACAGACACCAGTAGCAGTTATTGGACTTACATGTAGATTGGATATTTTGGAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028098.11 ENSMUST00000142851.8 |
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| CDS TCA 72 bp | ATGTTTCATTGCTATTATAAGACAGATTTCCAAGACTaGCAGACCATGTACAATATTCGCCTTAGAATCCAA | + |
|
Preference number: 6 (lower is better) Translates to: MFHCYYKTDFQD*QTMYNIRLRIQ Trigger: TTGGATTCTAAGGCGAATATTGTACATGGTCTGTCAGTCTTGGAAATCTGTCTTATAATAGCAATGAAACAT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028098.11 |
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