Pregenerated sensors for ORC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026037Ensembl transcript IDs: ENSMUST00000027198.12, ENSMUST00000114325.8
Found 105 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCACTCACAAAAAGCTGGGCATGGCTGTGCCTGTCACACCAGTACTaGTGTGAAGACAGGATCACTGGCAGCCCATCTGGCCTACAAGGA | + |
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Preference number: 1 (lower is better) Translates to: ALTKSWAWLCLSHQY*CEDRITGSPSGLQG Trigger: TCCTTGTAGGCCAGATGGGCTGCCAGTGATCCTGTCTTCACACCAGTACTGGTGTGACAGGCACAGCCATGCCCAGCTTTTTGTGAGTGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR TCA 90 bp | AGGATCACTGGCAGCCCATCTGGCCTACAAGGAGCTCTGGTTCAGTaGAGAGAGGCCTTGTCTCAAGGAAATAAGGCAGAAGGTGGTAGA | + |
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Preference number: 1 (lower is better) Translates to: RITGSPSGLQGALVQ*REALSQGNKAEGGR Trigger: TCTACCACCTTCTGCCTTATTTCCTTGAGACAAGGCCTCTCTTCACTGAACCAGAGCTCCTTGTAGGCCAGATGGGCTGCCAGTGATCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR CCA 90 bp | GTGAAGACAGGATCACTGGCAGCCCATCTGGCCTACAAGGAGCTCTaGTTCAGTGAAGAGAGGCCTTGTCTCAAGGAAATAAGGCAGAAG | + |
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Preference number: 1 (lower is better) Translates to: VKTGSLAAHLAYKEL*FSEERPCLKEIRQK Trigger: CTTCTGCCTTATTTCCTTGAGACAAGGCCTCTCTTCACTGAACCAGAGCTCCTTGTAGGCCAGATGGGCTGCCAGTGATCCTGTCTTCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR GCA 90 bp | AAGGAAATAAGGCAGAAGGTGGTAGAAGACATCTTACTCAGTCTCTaGACAGACACCCACATACCACATTCCACACAAGCAAAGTGCAGA | + |
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Preference number: 1 (lower is better) Translates to: KEIRQKVVEDILLSL*TDTHIPHSTQAKCR Trigger: TCTGCACTTTGCTTGTGTGGAATGTGGTATGTGGGTGTCTGTGCAGAGACTGAGTAAGATGTCTTCTACCACCTTCTGCCTTATTTCCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR GCA 90 bp | AGTCTCTGCACAGACACCCACATACCACATTCCACACAAGCAAAGTaGAGACCAGCAGGTTTCATGTTACCAATGTGTATTTATTTACTG | + |
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Preference number: 1 (lower is better) Translates to: SLCTDTHIPHSTQAK*RPAGFMLPMCIYLL Trigger: CAGTAAATAAATACACATTGGTAACATGAAACCTGCTGGTCTGCACTTTGCTTGTGTGGAATGTGGTATGTGGGTGTCTGTGCAGAGACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR CCA 90 bp | AGTTACACTAGAGAAATTAAGCAAAACTGTGAAAGTACATGGAGTTaGGGGGATGTCTCAGTGGGTAAGAAGTACCTGAGTTTGGATCCC | + |
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Preference number: 1 (lower is better) Translates to: SYTREIKQNCESTWS*GDVSVGKKYLSLDP Trigger: GGGATCCAAACTCAGGTACTTCTTACCCACTGAGACATCCCCCCAACTCCATGTACTTTCACAGTTTTGCTTAATTTCTCTAGTGTAACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR GCA 90 bp | GTACCGATACCAACGATTTTAAATATGCTTTCTAGATTGGACACATaGTCCACATATGCACACATCCCTTGTACTTCTCCCGTGATCTCA | + |
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Preference number: 1 (lower is better) Translates to: VPIPTILNMLSRLDT*STYAHIPCTSPVIS Trigger: TGAGATCACGGGAGAAGTACAAGGGATGTGTGCATATGTGGAGCATGTGTCCAATCTAGAAAGCATATTTAAAATCGTTGGTATCGGTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR-3UTR TCA 90 bp | GGTGTGAAGACAGGATCACTGGCAGCCCATCTGGCCTACAAGGAGCTCTGGTTCAACCAGCATTCTTACTaGGGAGCAGCAGCTGGGCCA | + |
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Preference number: 2 (lower is better) Translates to: GVKTGSLAAHLAYKELWFNQHSY*GAAAGP Trigger: TGGCCCAGCTGCTGCTCCTCAGTAAGAATGCTGGTT...GAACCAGAGCTCCTTGTAGGCCAGATGGGCTGCCAGTGATCCTGTCTTCACACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR-3UTR TCA 90 bp | GGATCCCAGCACTCACAAAAAGCTGGGCATGGCTGTGCCTGTCACACCAGTACTGCAGCTGGGCCACAATaGGGCTTCCACAGAAAGTTC | + |
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Preference number: 2 (lower is better) Translates to: GSQHSQKAGHGCACHTSTAAGPQ*GFHRKF Trigger: GAACTTTCTGTGGAAGCCTCATTGTGGCCCAGCTGC...AGTACTGGTGTGACAGGCACAGCCATGCCCAGCTTTTTGTGAGTGCTGGGATCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR-3UTR TCA 90 bp | CCCAGCACTCACAAAAAGCTGGGCATGGCTGTGCCTGTCACACCAGTACTGGTGGGAGCTCTGGTTCAGTaGAGAGAGGCCTTGTCTCAA | + |
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Preference number: 2 (lower is better) Translates to: PSTHKKLGMAVPVTPVLVGALVQ*REALSQ Trigger: TTGAGACAAGGCCTCTCTTCACTGAACCAGAGCTCC...CACCAGTACTGGTGTGACAGGCACAGCCATGCCCAGCTTTTTGTGAGTGCTGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR-3UTR CCA 90 bp | GGTGTGAAGACAGGATCACTGGCAGCCCATCTGGCCTACAAGGAGCTCTGGTTCCTTTATTTCTTAGCCTaGCTTCTCCTGGTACCGATA | + |
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Preference number: 2 (lower is better) Translates to: GVKTGSLAAHLAYKELWFLYFLA*LLLVPI Trigger: TATCGGTACCAGGAGAAGCCAGGCTAAGAAATAAAG...GAACCAGAGCTCCTTGTAGGCCAGATGGGCTGCCAGTGATCCTGTCTTCACACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR-3UTR TCA 90 bp | GGTGTGAAGACAGGATCACTGGCAGCCCATCTGGCCTACAAGGAGCTCTGGTTCTTGGTATTACAAATGTaGGCTCAGGTCTTGTGTCTT | + |
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Preference number: 2 (lower is better) Translates to: GVKTGSLAAHLAYKELWFLVLQM*AQVLCL Trigger: AAGACACAAGACCTGAGCTCACATTTGTAATACCAA...GAACCAGAGCTCCTTGTAGGCCAGATGGGCTGCCAGTGATCCTGTCTTCACACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR-3UTR GCA 90 bp | GGTGTGAAGACAGGATCACTGGCAGCCCATCTGGCCTACAAGGAGCTCTGGTTCATCTCATTTGAACAGTaGTGGCTGTCTTTATTTAGC | + |
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Preference number: 2 (lower is better) Translates to: GVKTGSLAAHLAYKELWFISFEQ*WLSLFS Trigger: GCTAAATAAAGACAGCCAGCACTGTTCAAATGAGAT...GAACCAGAGCTCCTTGTAGGCCAGATGGGCTGCCAGTGATCCTGTCTTCACACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR-3UTR CCA 90 bp | GGATCCCAGCACTCACAAAAAGCTGGGCATGGCTGTGCCTGTCACACCAGTACTGTAGTAATTCAGCTCTaGAGTGTTAAATTGCCCTCA | + |
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Preference number: 2 (lower is better) Translates to: GSQHSQKAGHGCACHTSTVVIQL*SVKLPS Trigger: TGAGGGCAATTTAACACTCCAGAGCTGAATTACTAC...AGTACTGGTGTGACAGGCACAGCCATGCCCAGCTTTTTGTGAGTGCTGGGATCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR-3UTR GCA 90 bp | GGATCCCAGCACTCACAAAAAGCTGGGCATGGCTGTGCCTGTCACACCAGTACTTCTGGAGTGTTAAATTaGCCTCAAAAATTAGGGATA | + |
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Preference number: 2 (lower is better) Translates to: GSQHSQKAGHGCACHTSTSGVLN*PQKLGI Trigger: TATCCCTAATTTTTGAGGGCAATTTAACACTCCAGA...AGTACTGGTGTGACAGGCACAGCCATGCCCAGCTTTTTGTGAGTGCTGGGATCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR-3UTR TCA 90 bp | ATCTTACTCAGTCTCTGCACAGACACCCACATACCACATTCCACACAAGCAAAGGTCATCTCAGTCCACTaGCATCTTCTACCATCATCT | + |
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Preference number: 2 (lower is better) Translates to: ILLSLCTDTHIPHSTQAKVISVH*HLLPSS Trigger: AGATGATGGTAGAAGATGTCAGTGGACTGAGATGAC...CTTTGCTTGTGTGGAATGTGGTATGTGGGTGTCTGTGCAGAGACTGAGTAAGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR-3UTR TCA 90 bp | ATCTTACTCAGTCTCTGCACAGACACCCACATACCACATTCCACACAAGCAAAGCTGAATGTTTGTTTTTaGAACAGGACATCACCGCAG | + |
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Preference number: 2 (lower is better) Translates to: ILLSLCTDTHIPHSTQAKLNVCF*NRTSPQ Trigger: CTGCGGTGATGTCCTGTTTCAAAAACAAACATTCAG...CTTTGCTTGTGTGGAATGTGGTATGTGGGTGTCTGTGCAGAGACTGAGTAAGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR CAA 90 bp | CTTCTCCTGGTACCGATACCAACGATTTTAAATATGCTTTCTAGATaGGACACATGCTCCACATATGCACACATCCCTTGTACTTCTCCC | + |
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Preference number: 2 (lower is better) Translates to: LLLVPIPTILNMLSR*DTCSTYAHIPCTSP Trigger: GGGAGAAGTACAAGGGATGTGTGCATATGTGGAGCATGTGTCCAATCTAGAAAGCATATTTAAAATCGTTGGTATCGGTACCAGGAGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR-3UTR TCA 90 bp | ACTGTAGGAGTTACACTAGAGAAATTAAGCAAAACTGTGAAAGTACATGGAGTTCAATCCGTCTGCCTCTaGCTCCTGAGTGCTGGGATT | + |
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Preference number: 2 (lower is better) Translates to: TVGVTLEKLSKTVKVHGVQSVCL*LLSAGI Trigger: AATCCCAGCACTCAGGAGTCAGAGGCAGACGGATTG...AACTCCATGTACTTTCACAGTTTTGCTTAATTTCTCTAGTGTAACTCCTACAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR-3UTR GCA 90 bp | CCTTGTCTCAAGGAAATAAGGCAGAAGGTGGTAGAAGACATCTTACTCAGTCTCGTTTTCCTCTGCCTCTaGCTTCTTGATGTTGGTATT | + |
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Preference number: 2 (lower is better) Translates to: PCLKEIRQKVVEDILLSLVFLCL*LLDVGI Trigger: AATACCAACATCAAGAAGGCAGAGGCAGAGGAAAAC...GAGACTGAGTAAGATGTCTTCTACCACCTTCTGCCTTATTTCCTTGAGACAAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR-3UTR TCA 90 bp | ACTGTAGGAGTTACACTAGAGAAATTAAGCAAAACTGTGAAAGTACATGGAGTTTCTGCCTCTGACTCCTaGGTGCTGGGATTAAAGGTG | + |
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Preference number: 2 (lower is better) Translates to: TVGVTLEKLSKTVKVHGVSASDS*VLGLKV Trigger: CACCTTTAATCCCAGCACTCAGGAGTCAGAGGCAGA...AACTCCATGTACTTTCACAGTTTTGCTTAATTTCTCTAGTGTAACTCCTACAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR-3UTR GCA 90 bp | TGGCTTCTCCTGGTACCGATACCAACGATTTTAAATATGCTTTCTAGATTGGACTTCAAATTGATGCTATaGCTCTTCCATAGAACATCT | + |
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Preference number: 2 (lower is better) Translates to: WLLLVPIPTILNMLSRLDFKLML*LFHRTS Trigger: AGATGTTCTATGGAAGAGGCATAGCATCAATTTGAA...GTCCAATCTAGAAAGCATATTTAAAATCGTTGGTATCGGTACCAGGAGAAGCCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR CCA 72 bp | AAAAGCTGGGCATGGCTGTGCCTGTCACACCAGTACTaGTGTGAAGACAGGATCACTGGCAGCCCATCTGGC | + |
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Preference number: 3 (lower is better) Translates to: KSWAWLCLSHQY*CEDRITGSPSG Trigger: GCCAGATGGGCTGCCAGTGATCCTGTCTTCACACCAGTACTGGTGTGACAGGCACAGCCATGCCCAGCTTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR TCA 72 bp | TTAAAGGAGAGAAGCAATCCGTCTGCCTCTGACTCCTaGGTGCTGGGATTAAAGGTGTGCGCTACCTATCCC | + |
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Preference number: 3 (lower is better) Translates to: LKERSNPSASDS*VLGLKVCATYP Trigger: GGGATAGGTAGCGCACACCTTTAATCCCAGCACTCAGGAGTCAGAGGCAGACGGATTGCTTCTCTCCTTTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR TCA 72 bp | AGTCCACAAGGAGAAGGCTGTGTCATCTCAGTCCACTaGCATCTTCTACCATCATCTCAGGAGAAGCAGGAC | + |
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Preference number: 3 (lower is better) Translates to: SPQGEGCVISVH*HLLPSSQEKQD Trigger: GTCCTGCTTCTCCTGAGATGATGGTAGAAGATGTCAGTGGACTGAGATGACACAGCCTTCTCCTTGTGGACT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR TCA 72 bp | TTGTGTCTTAAAGGAGAGAAGCAATCCGTCTGCCTCTaGCTCCTGAGTGCTGGGATTAAAGGTGTGCGCTAC | + |
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Preference number: 3 (lower is better) Translates to: LCLKGEKQSVCL*LLSAGIKGVRY Trigger: GTAGCGCACACCTTTAATCCCAGCACTCAGGAGTCAGAGGCAGACGGATTGCTTCTCTCCTTTAAGACACAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR CCA 72 bp | GGATGTAAACCAGCATTCTTACTGAGGAGCAGCAGCTaGGCCACAATGAGGCTTCCACAGAAAGTTCAAGGA | + |
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Preference number: 3 (lower is better) Translates to: GCKPAFLLRSSS*ATMRLPQKVQG Trigger: TCCTTGAACTTTCTGTGGAAGCCTCATTGTGGCCCAGCTGCTGCTCCTCAGTAAGAATGCTGGTTTACATCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR-3UTR CAA 90 bp | TACTCAGTCTCTGCACAGACACCCACATACCACATTCCACACAAGCAAAGTGCAGAGAATGACCTAATGTaGGATGTAAACCAGCATTCT | + |
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Preference number: 3 (lower is better) Translates to: YSVSAQTPTYHIPHKQSAENDLM*DVNQHS Trigger: AGAATGCTGGTTTACATCCAACATTAGGTCATTCTC...TGCACTTTGCTTGTGTGGAATGTGGTATGTGGGTGTCTGTGCAGAGACTGAGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR TCA 72 bp | GCTCCACATATGCACACATCCCTTGTACTTCTCCCGTaGTCTCATTTGAACAGTGCTGGCTGTCTTTATTTA | + |
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Preference number: 3 (lower is better) Translates to: APHMHTSLVLLP*SHLNSAGCLYL Trigger: TAAATAAAGACAGCCAGCACTGTTCAAATGAGATCACGGGAGAAGTACAAGGGATGTGTGCATATGTGGAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR GCA 72 bp | ATCCCTTGTACTTCTCCCGTGATCTCATTTGAACAGTaGTGGCTGTCTTTATTTAGCATGTGTGGCCTAAGT | + |
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Preference number: 3 (lower is better) Translates to: IPCTSPVISFEQ*WLSLFSMCGLS Trigger: ACTTAGGCCACACATGCTAAATAAAGACAGCCAGCACTGTTCAAATGAGATCACGGGAGAAGTACAAGGGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR GCA 72 bp | ACAGACACCCACATACCACATTCCACACAAGCAAAGTaGAGACCAGCAGGTTTCATGTTACCAATGTGTATT | + |
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Preference number: 3 (lower is better) Translates to: TDTHIPHSTQAK*RPAGFMLPMCI Trigger: AATACACATTGGTAACATGAAACCTGCTGGTCTGCACTTTGCTTGTGTGGAATGTGGTATGTGGGTGTCTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR-3UTR CAA 90 bp | ATACCACATTCCACACAAGCAAAGTGCAGACCAGCAGGTTTCATGTTACCAATGCTCTGGAGTGTTAAATaGCCCTCAAAAATTAGGGAT | + |
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Preference number: 3 (lower is better) Translates to: IPHSTQAKCRPAGFMLPMLWSVK*PSKIRD Trigger: ATCCCTAATTTTTGAGGGCAATTTAACACTCCAGAG...CATTGGTAACATGAAACCTGCTGGTCTGCACTTTGCTTGTGTGGAATGTGGTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR TCA 72 bp | GCCTCTTCCATAGAACATCTTGTATGCTGGAGAGAATaGCCTAATGTTGGATGTAAACCAGCATTCTTACTG | + |
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Preference number: 3 (lower is better) Translates to: ASSIEHLVCWRE*PNVGCKPAFLL Trigger: CAGTAAGAATGCTGGTTTACATCCAACATTAGGTCATTCTCTCCAGCATACAAGATGTTCTATGGAAGAGGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR TCA 72 bp | AGACAGTACACCAGCCAGGCTAATCAAAGTTCAAATTaGTGCTATGCCTCTTCCATAGAACATCTTGTATGC | + |
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Preference number: 3 (lower is better) Translates to: RQYTSQANQSSN*CYASSIEHLVC Trigger: GCATACAAGATGTTCTATGGAAGAGGCATAGCATCAATTTGAACTTTGATTAGCCTGGCTGGTGTACTGTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR GCA 72 bp | CCAACGATTTTAAATATGCTTTCTAGATTGGACACATaGTCCACATATGCACACATCCCTTGTACTTCTCCC | + |
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Preference number: 3 (lower is better) Translates to: PTILNMLSRLDT*STYAHIPCTSP Trigger: GGGAGAAGTACAAGGGATGTGTGCATATGTGGAGCATGTGTCCAATCTAGAAAGCATATTTAAAATCGTTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR-3UTR CAA 90 bp | CCTTGTCTCAAGGAAATAAGGCAGAAGGTGGTAGAAGACATCTTACTCAGTCTCAATATGCTTTCTAGATaGGACACATGCTCCACATAT | + |
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Preference number: 3 (lower is better) Translates to: PCLKEIRQKVVEDILLSLNMLSR*DTCSTY Trigger: ATATGTGGAGCATGTGTCCAATCTAGAAAGCATATT...GAGACTGAGTAAGATGTCTTCTACCACCTTCTGCCTTATTTCCTTGAGACAAGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| 3UTR CCA 72 bp | ACAATAAAATGTAAATCAGGACTTTATTTCTTAGCCTaGCTTCTCCTGGTACCGATACCAACGATTTTAAAT | + |
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Preference number: 3 (lower is better) Translates to: TIKCKSGLYFLA*LLLVPIPTILN Trigger: ATTTAAAATCGTTGGTATCGGTACCAGGAGAAGCCAGGCTAAGAAATAAAGTCCTGATTTACATTTTATTGT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| CDS-3UTR TCA 90 bp | GGATCCCAGCACTCACAAAAAGCTGGGCATGGCTGTGCCTGTCACACCAGTACTTGGAAAGTACCCACATaGCTGAGGACATCTTCAGTT | + |
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Preference number: 4 (lower is better) Translates to: GSQHSQKAGHGCACHTSTWKVPT*LRTSSV Trigger: AACTGAAGATGTCCTCAGTCATGTGGGTACTTTCCA...AGTACTGGTGTGACAGGCACAGCCATGCCCAGCTTTTTGTGAGTGCTGGGATCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| CDS-3UTR TCA 90 bp | GGATCCCAGCACTCACAAAAAGCTGGGCATGGCTGTGCCTGTCACACCAGTACTAGGCTTCGTAAGACATaGATCAGAGAACTAAGTGGC | + |
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Preference number: 4 (lower is better) Translates to: GSQHSQKAGHGCACHTSTRLRKT*IRELSG Trigger: GCCACTTAGTTCTCTGATTCATGTCTTACGAAGCCT...AGTACTGGTGTGACAGGCACAGCCATGCCCAGCTTTTTGTGAGTGCTGGGATCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| CDS-3UTR GCA 90 bp | GGTGTGAAGACAGGATCACTGGCAGCCCATCTGGCCTACAAGGAGCTCTGGTTCACTGTTAACAAGGAATaGTTCCCTACACTGCTGGTA | + |
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Preference number: 4 (lower is better) Translates to: GVKTGSLAAHLAYKELWFTVNKE*FPTLLV Trigger: TACCAGCAGTGTAGGGAAGCATTCCTTGTTAACAGT...GAACCAGAGCTCCTTGTAGGCCAGATGGGCTGCCAGTGATCCTGTCTTCACACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| CDS-3UTR TCA 90 bp | TGTGAGCTCAGGTCTTGTGTCTTAAAGGAGAGAAGCAATCCGTCTGCCTCTGACGGATTGATTTCACACTaGCGCCAGGAAAGTAGCCGT | + |
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Preference number: 4 (lower is better) Translates to: CELRSCVLKERSNPSASDGLISH*RQESSR Trigger: ACGGCTACTTTCCTGGCGTCAGTGTGAAATCAATCC...GTCAGAGGCAGACGGATTGCTTCTCTCCTTTAAGACACAAGACCTGAGCTCACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| CDS-3UTR GCA 90 bp | TGGTTCAGTGAAGAGAGGCCTTGTCTCAAGGAAATAAGGCAGAAGGTGGTAGAAGGCAGAGATCCAGACTaGTTAACCAGAAGGGAGTTC | + |
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Preference number: 4 (lower is better) Translates to: WFSEERPCLKEIRQKVVEGRDPD*LTRREF Trigger: GAACTCCCTTCTGGTTAAGCAGTCTGGATCTCTGCC...TTCTACCACCTTCTGCCTTATTTCCTTGAGACAAGGCCTCTCTTCACTGAACCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| CDS-3UTR CCA 90 bp | CCGTCTGAAGCAAGTGCACTTGTAGTAATTCAGCTCTGGAGTGTTAAATTGCCCGCACGCTTGGCACCTTaGTTTCCTTTAACTGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: PSEASALVVIQLWSVKLPARLAP*FPLTAE Trigger: CTCTGCAGTTAAAGGAAACCAAGGTGCCAAGCGTGC...GGGCAATTTAACACTCCAGAGCTGAATTACTACAAGTGCACTTGCTTCAGACGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| CDS-3UTR TCA 90 bp | TGTGAGCTCAGGTCTTGTGTCTTAAAGGAGAGAAGCAATCCGTCTGCCTCTGACCATAAAGCACAATGTTaGACCCAAGGTGTAACTGAA | + |
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Preference number: 4 (lower is better) Translates to: CELRSCVLKERSNPSASDHKAQC*TQGVTE Trigger: TTCAGTTACACCTTGGGTTCAACATTGTGCTTTATG...GTCAGAGGCAGACGGATTGCTTCTCTCCTTTAAGACACAAGACCTGAGCTCACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| CDS-3UTR CCA 90 bp | ATGCTTTCTAGATTGGACACATGCTCCACATATGCACACATCCCTTGTACTTCTTTTTCTGATCCACTCTaGCTCTCCTCAGCCTCTGCA | + |
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Preference number: 4 (lower is better) Translates to: MLSRLDTCSTYAHIPCTSFSDPL*LSSASA Trigger: TGCAGAGGCTGAGGAGAGCCAGAGTGGATCAGAAAA...AGAAGTACAAGGGATGTGTGCATATGTGGAGCATGTGTCCAATCTAGAAAGCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| CDS-3UTR TCA 90 bp | ATGCTTTCTAGATTGGACACATGCTCCACATATGCACACATCCCTTGTACTTCTTTATGCAGAGTTTTCTaGTCCACTCTGGCTCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: MLSRLDTCSTYAHIPCTSLCRVF*STLALL Trigger: GAGGAGAGCCAGAGTGGATCAGAAAACTCTGCATAA...AGAAGTACAAGGGATGTGTGCATATGTGGAGCATGTGTCCAATCTAGAAAGCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| CDS-3UTR TCA 90 bp | TGGCTTCTCCTGGTACCGATACCAACGATTTTAAATATGCTTTCTAGATTGGACAGACTCTGCTTTGCATaGTCCCACATGAGAGGAGCA | + |
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Preference number: 4 (lower is better) Translates to: WLLLVPIPTILNMLSRLDRLCFA*SHMRGA Trigger: TGCTCCTCTCATGTGGGATCATGCAAAGCAGAGTCT...GTCCAATCTAGAAAGCATATTTAAAATCGTTGGTATCGGTACCAGGAGAAGCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
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| CDS-3UTR GCA 90 bp | AGTGAAGAGAGGCCTTGTCTCAAGGAAATAAGGCAGAAGGTGGTAGAAGACATCATAAAGACTCTGCTTTaGATGATCCCACATGAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: SEERPCLKEIRQKVVEDIIKTLL*MIPHER Trigger: CCTCTCATGTGGGATCATGCAAAGCAGAGTCTTTAT...GATGTCTTCTACCACCTTCTGCCTTATTTCCTTGAGACAAGGCCTCTCTTCACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS-3UTR CCA 90 bp | TGGTTCAGTGAAGAGAGGCCTTGTCTCAAGGAAATAAGGCAGAAGGTGGTAGAATTTGGAAACAGGAGCTaGAAGAAGTCTATTCTGACC | + |
|
Preference number: 4 (lower is better) Translates to: WFSEERPCLKEIRQKVVEFGNRS*KKSILT Trigger: GGTCAGAATAGACTTCTTCCAGCTCCTGTTTCCAAA...TTCTACCACCTTCTGCCTTATTTCCTTGAGACAAGGCCTCTCTTCACTGAACCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS-3UTR CCA 90 bp | TGGTTCAGTGAAGAGAGGCCTTGTCTCAAGGAAATAAGGCAGAAGGTGGTAGAAAATCAGAGAACTAAGTaGCAGAGATCCAGACTGCTT | + |
|
Preference number: 4 (lower is better) Translates to: WFSEERPCLKEIRQKVVENQRTK*QRSRLL Trigger: AAGCAGTCTGGATCTCTGCCACTTAGTTCTCTGATT...TTCTACCACCTTCTGCCTTATTTCCTTGAGACAAGGCCTCTCTTCACTGAACCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS-3UTR CCA 90 bp | ATCTTACTCAGTCTCTGCACAGACACCCACATACCACATTCCACACAAGCAAAGCTAAATTCAGTTAACTaGGCTCGGAGTGTGAGATCA | + |
|
Preference number: 4 (lower is better) Translates to: ILLSLCTDTHIPHSTQAKLNSVN*ARSVRS Trigger: TGATCTCACACTCCGAGCCCAGTTAACTGAATTTAG...CTTTGCTTGTGTGGAATGTGGTATGTGGGTGTCTGTGCAGAGACTGAGTAAGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS-3UTR TCA 90 bp | AGTGAAGAGAGGCCTTGTCTCAAGGAAATAAGGCAGAAGGTGGTAGAAGACATCTCTCTGTCCAGAATGTaGCTAAGAACATCATCATCT | + |
|
Preference number: 4 (lower is better) Translates to: SEERPCLKEIRQKVVEDISLSRM*LRTSSS Trigger: AGATGATGATGTTCTTAGTCACATTCTGGACAGAGA...GATGTCTTCTACCACCTTCTGCCTTATTTCCTTGAGACAAGGCCTCTCTTCACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS-3UTR TCA 90 bp | ATGCTTTCTAGATTGGACACATGCTCCACATATGCACACATCCCTTGTACTTCTTATAGAGTTCAGGATTaGTTTCACACTGACGCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: MLSRLDTCSTYAHIPCTSYRVQD*FHTDAR Trigger: CCTGGCGTCAGTGTGAAATCAATCCTGAACTCTATA...AGAAGTACAAGGGATGTGTGCATATGTGGAGCATGTGTCCAATCTAGAAAGCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS-3UTR CCA 90 bp | TGGTTCAGTGAAGAGAGGCCTTGTCTCAAGGAAATAAGGCAGAAGGTGGTAGAATGTCCAAGAATTTGCTaGCTATTGTCTCCTCTTAAC | + |
|
Preference number: 4 (lower is better) Translates to: WFSEERPCLKEIRQKVVECPRIC*LLSPLN Trigger: GTTAAGAGGAGACAATAGCCAGCAAATTCTTGGACA...TTCTACCACCTTCTGCCTTATTTCCTTGAGACAAGGCCTCTCTTCACTGAACCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS-3UTR GCA 90 bp | ACTGTAGGAGTTACACTAGAGAAATTAAGCAAAACTGTGAAAGTACATGGAGTTGCTCTCCTCAGCCTCTaGAGCGTTCGATCAGATGTT | + |
|
Preference number: 4 (lower is better) Translates to: TVGVTLEKLSKTVKVHGVALLSL*SVRSDV Trigger: AACATCTGATCGAACGCTGCAGAGGCTGAGGAGAGC...AACTCCATGTACTTTCACAGTTTTGCTTAATTTCTCTAGTGTAACTCCTACAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS-3UTR TCA 90 bp | AACTCACTAACTAGTCTAGGTCTTGAACTCATGTTTTCCTCTGCCTCTGCCTTCTTTCCCAAGGATTCTTaGATATTTCTTCCCAAGACT | + |
|
Preference number: 4 (lower is better) Translates to: NSLTSLGLELMFSSASAFFPKDS*IFLPKT Trigger: AGTCTTGGGAAGAAATATTCAAGAATCCTTGGGAAA...GAAGGCAGAGGCAGAGGAAAACATGAGTTCAAGACCTAGACTAGTTAGTGAGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS-3UTR GCA 90 bp | ATACCACATTCCACACAAGCAAAGTGCAGACCAGCAGGTTTCATGTTACCAATGGAGATGGTCAATAGATaGTATGAGATACACGTTATG | + |
|
Preference number: 4 (lower is better) Translates to: IPHSTQAKCRPAGFMLPMEMVNR*YEIHVM Trigger: CATAACGTGTATCTCATAGCATCTATTGACCATCTC...CATTGGTAACATGAAACCTGCTGGTCTGCACTTTGCTTGTGTGGAATGTGGTAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS-3UTR CCA 90 bp | TGGTTCAGTGAAGAGAGGCCTTGTCTCAAGGAAATAAGGCAGAAGGTGGTAGAAAATCTTGAAGCATGGTaGTTCGAAACTTTTCTAGTA | + |
|
Preference number: 4 (lower is better) Translates to: WFSEERPCLKEIRQKVVENLEAW*FETFLV Trigger: TACTAGAAAAGTTTCGAACCACCATGCTTCAAGATT...TTCTACCACCTTCTGCCTTATTTCCTTGAGACAAGGCCTCTCTTCACTGAACCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS-3UTR CCA 90 bp | CCTTGTCTCAAGGAAATAAGGCAGAAGGTGGTAGAAGACATCTTACTCAGTCTCTGGAATCTTGAAGCATaGTGGTTCGAAACTTTTCTA | + |
|
Preference number: 4 (lower is better) Translates to: PCLKEIRQKVVEDILLSLWNLEA*WFETFL Trigger: TAGAAAAGTTTCGAACCACCATGCTTCAAGATTCCA...GAGACTGAGTAAGATGTCTTCTACCACCTTCTGCCTTATTTCCTTGAGACAAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS-3UTR CCA 90 bp | CCGTCTGAAGCAAGTGCACTTGTAGTAATTCAGCTCTGGAGTGTTAAATTGCCCTCTCCTCTTAACATTTaGCTATCCAAATTGTGGATA | + |
|
Preference number: 4 (lower is better) Translates to: PSEASALVVIQLWSVKLPSPLNI*LSKLWI Trigger: TATCCACAATTTGGATAGCCAAATGTTAAGAGGAGA...GGGCAATTTAACACTCCAGAGCTGAATTACTACAAGTGCACTTGCTTCAGACGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS-3UTR GCA 90 bp | TGGCTTCTCCTGGTACCGATACCAACGATTTTAAATATGCTTTCTAGATTGGACCTCCAACTCACAGTCTaGCTTCTTTATTACTTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: WLLLVPIPTILNMLSRLDLQLTV*LLYYFL Trigger: CAGAAAGTAATAAAGAAGGCAGACTGTGAGTTGGAG...GTCCAATCTAGAAAGCATATTTAAAATCGTTGGTATCGGTACCAGGAGAAGCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS-3UTR CCA 90 bp | AACATCTTGTATGCTGGAGAGAATGACCTAATGTTGGATGTAAACCAGCATTCTCTAGTAAATCTCTCTTaGACCCCAAGCCATAAAGCA | + |
|
Preference number: 4 (lower is better) Translates to: NILYAGENDLMLDVNQHSLVNLS*TPSHKA Trigger: TGCTTTATGGCTTGGGGTCCAAGAGAGATTTACTAG...AGAATGCTGGTTTACATCCAACATTAGGTCATTCTCTCCAGCATACAAGATGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| 3UTR CAA 72 bp | GTACCGATACCAACGATTTTAAATATGCTTTCTAGATaGGACACATGCTCCACATATGCACACATCCCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: VPIPTILNMLSR*DTCSTYAHIPC Trigger: ACAAGGGATGTGTGCATATGTGGAGCATGTGTCCAATCTAGAAAGCATATTTAAAATCGTTGGTATCGGTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS-3UTR CCA 90 bp | AGTATTAGAGACAGTACACCAGCCAGGCTAATCAAAGTTCAAATTGATGCTATGAGAGGAGCATTGAGATaGTCAATAGATGCTATGAGA | + |
|
Preference number: 4 (lower is better) Translates to: SIRDSTPARLIKVQIDAMRGALR*SIDAMR Trigger: TCTCATAGCATCTATTGACCATCTCAATGCTCCTCT...CATAGCATCAATTTGAACTTTGATTAGCCTGGCTGGTGTACTGTCTCTAATACT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS-3UTR CCA 90 bp | ACTGTAGGAGTTACACTAGAGAAATTAAGCAAAACTGTGAAAGTACATGGAGTTTGGCTATCCAAATTGTaGATAAGAAGGAAGAGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: TVGVTLEKLSKTVKVHGVWLSKL*IRRKSS Trigger: AGAACTCTTCCTTCTTATCCACAATTTGGATAGCCA...AACTCCATGTACTTTCACAGTTTTGCTTAATTTCTCTAGTGTAACTCCTACAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS-3UTR CAA 90 bp | GGCTGTGCCTGTCACACCAGTACTGGTGTGAAGACAGGATCACTGGCAGCCCATCACATGAGAGGAGCATaGAGATGGTCAATAGATGCT | + |
|
Preference number: 5 (lower is better) Translates to: GCACHTSTGVKTGSLAAHHMRGA*RWSIDA Trigger: AGCATCTATTGACCATCTCAATGCTCCTCTCATGTG...ATGGGCTGCCAGTGATCCTGTCTTCACACCAGTACTGGTGTGACAGGCACAGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS TCA 90 bp | TTAGCAGAGCCGTTTCCCAAGGATTCTCCTTCTCTGTCCAGAATGTaGCTAAGAACATCATCATCTCCCACAAACTGCACGCTTGGCACC | + |
|
Preference number: 5 (lower is better) Translates to: LAEPFPKDSPSLSRM*LRTSSSPTNCTLGT Trigger: GGTGCCAAGCGTGCAGTTTGTGGGAGATGATGATGTTCTTAGTCACATTCTGGACAGAGAAGGAGAATCCTTGGGAAACGGCTCTGCTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114325.8 |
||
| CDS-3UTR CAA 90 bp | GGTGTGAAGACAGGATCACTGGCAGCCCATCTGGCCTACAAGGAGCTCTGGTTCAATTCAGTTTTGTTATaGTTCACCAGTGGAGCTTTC | + |
|
Preference number: 5 (lower is better) Translates to: GVKTGSLAAHLAYKELWFNSVLL*FTSGAF Trigger: GAAAGCTCCACTGGTGAACAATAACAAAACTGAATT...GAACCAGAGCTCCTTGTAGGCCAGATGGGCTGCCAGTGATCCTGTCTTCACACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS-3UTR CAA 90 bp | CCCAGCACTCACAAAAAGCTGGGCATGGCTGTGCCTGTCACACCAGTACTGGTGACCAAGTCACTCGCTTaGTCTCTTTTCTTTTTCTTA | + |
|
Preference number: 5 (lower is better) Translates to: PSTHKKLGMAVPVTPVLVTKSLA*SLFFFL Trigger: TAAGAAAAAGAAAAGAGACAAAGCGAGTGACTTGGT...CACCAGTACTGGTGTGACAGGCACAGCCATGCCCAGCTTTTTGTGAGTGCTGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS-3UTR CAA 90 bp | GGCTGTGCCTGTCACACCAGTACTGGTGTGAAGACAGGATCACTGGCAGCCCATCAGTTTCTCATGCTGTaGATTCAATCGTTCAATTTC | + |
|
Preference number: 5 (lower is better) Translates to: GCACHTSTGVKTGSLAAHQFLML*IQSFNF Trigger: GAAATTGAACGATTGAATCAACAGCATGAGAAACTG...ATGGGCTGCCAGTGATCCTGTCTTCACACCAGTACTGGTGTGACAGGCACAGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS-3UTR CAA 90 bp | ATCTTACTCAGTCTCTGCACAGACACCCACATACCACATTCCACACAAGCAAAGTGCACGCTTGGCACCTaGGTTTCCTTTAACTGCAGA | + |
|
Preference number: 5 (lower is better) Translates to: ILLSLCTDTHIPHSTQAKCTLGT*VSFNCR Trigger: TCTGCAGTTAAAGGAAACCAAGGTGCCAAGCGTGCA...CTTTGCTTGTGTGGAATGTGGTATGTGGGTGTCTGTGCAGAGACTGAGTAAGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS CCA 90 bp | GTCTCTTTTCTTTTTCTTAGGCAGTGTCTCTTTGGAAACAGGAGCTaGAAGAAGTCTATTCTGACCTTGACTCTTCTGAGAGAGCCTGGC | + |
|
Preference number: 5 (lower is better) Translates to: VSFLFLRQCLFGNRS*KKSILTLTLLREPG Trigger: GCCAGGCTCTCTCAGAAGAGTCAAGGTCAGAATAGACTTCTTCCAGCTCCTGTTTCCAAAGAGACACTGCCTAAGAAAAAGAAAAGAGAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027198.12 ENSMUST00000114325.8 |
||
| CDS-3UTR CAA 90 bp | AGTGAAGAGAGGCCTTGTCTCAAGGAAATAAGGCAGAAGGTGGTAGAAGACATCCTGATCCAGAACACTTaGGAAAGTACCCACATGACT | + |
|
Preference number: 5 (lower is better) Translates to: SEERPCLKEIRQKVVEDILIQNT*ESTHMT Trigger: AGTCATGTGGGTACTTTCCAAAGTGTTCTGGATCAG...GATGTCTTCTACCACCTTCTGCCTTATTTCCTTGAGACAAGGCCTCTCTTCACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS-3UTR CAA 90 bp | AGTGAAGAGAGGCCTTGTCTCAAGGAAATAAGGCAGAAGGTGGTAGAAGACATCCAACTGTCCAAGAATTaGCTGGCTATTGTCTCCTCT | + |
|
Preference number: 5 (lower is better) Translates to: SEERPCLKEIRQKVVEDIQLSKN*LAIVSS Trigger: AGAGGAGACAATAGCCAGCAAATTCTTGGACAGTTG...GATGTCTTCTACCACCTTCTGCCTTATTTCCTTGAGACAAGGCCTCTCTTCACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS TCA 90 bp | AGTACCCACATGACTGAGGACATCTTCAGTTATAGAGTTCAGGATTaGTTTCACACTGACGCCAGGAAAGTAGCCGTTGATGACAACATG | + |
|
Preference number: 5 (lower is better) Translates to: STHMTEDIFSYRVQD*FHTDARKVAVDDNM Trigger: CATGTTGTCATCAACGGCTACTTTCCTGGCGTCAGTGTGAAATCAATCCTGAACTCTATAACTGAAGATGTCCTCAGTCATGTGGGTACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027198.12 ENSMUST00000114325.8 |
||
| CDS-3UTR CAA 90 bp | ATACCACATTCCACACAAGCAAAGTGCAGACCAGCAGGTTTCATGTTACCAATGAAGTCTATTCTGACCTaGACTCTTCTGAGAGAGCCT | + |
|
Preference number: 5 (lower is better) Translates to: IPHSTQAKCRPAGFMLPMKSILT*TLLREP Trigger: AGGCTCTCTCAGAAGAGTCAAGGTCAGAATAGACTT...CATTGGTAACATGAAACCTGCTGGTCTGCACTTTGCTTGTGTGGAATGTGGTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS-3UTR CAA 90 bp | ATGCTTTCTAGATTGGACACATGCTCCACATATGCACACATCCCTTGTACTTCTTTAGGCAGTGTCTCTTaGGAAACAGGAGCTGGAAGA | + |
|
Preference number: 5 (lower is better) Translates to: MLSRLDTCSTYAHIPCTSLGSVS*ETGAGR Trigger: TCTTCCAGCTCCTGTTTCCAAAGAGACACTGCCTAA...AGAAGTACAAGGGATGTGTGCATATGTGGAGCATGTGTCCAATCTAGAAAGCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS-3UTR CAA 90 bp | AGTATTAGAGACAGTACACCAGCCAGGCTAATCAAAGTTCAAATTGATGCTATGCCACAAACTGCACGCTaGGCACCTTGGTTTCCTTTA | + |
|
Preference number: 5 (lower is better) Translates to: SIRDSTPARLIKVQIDAMPQTAR*APWFPL Trigger: TAAAGGAAACCAAGGTGCCAAGCGTGCAGTTTGTGG...CATAGCATCAATTTGAACTTTGATTAGCCTGGCTGGTGTACTGTCTCTAATACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS-3UTR CAA 90 bp | CCGTCTGAAGCAAGTGCACTTGTAGTAATTCAGCTCTGGAGTGTTAAATTGCCCGTTTCCCAAGGATTCTaGAATATTTCTTCCCAAGAC | + |
|
Preference number: 5 (lower is better) Translates to: PSEASALVVIQLWSVKLPVSQGF*NISSQD Trigger: GTCTTGGGAAGAAATATTCAAGAATCCTTGGGAAAC...GGGCAATTTAACACTCCAGAGCTGAATTACTACAAGTGCACTTGCTTCAGACGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS TCA 90 bp | ATTAGTGTCTTCTTCTTCGTCTTTTGTAGCCTCTTCATCATCCTCTaGGCTGGAAGCAGAATACTCACTCTCACTGTCATAATGAGACCT | + |
|
Preference number: 5 (lower is better) Translates to: ISVFFFVFCSLFIIL*AGSRILTLTVIMRP Trigger: AGGTCTCATTATGACAGTGAGAGTGAGTATTCTGCTTCCAGCTCAGAGGATGATGAAGAGGCTACAAAAGACGAAGAAGAAGACACTAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027198.12 ENSMUST00000114325.8 |
||
| CDS-3UTR CAA 90 bp | AGTGAAGAGAGGCCTTGTCTCAAGGAAATAAGGCAGAAGGTGGTAGAAGACATCGACAGAAATTCAGTTTaGTTATTGTTCACCAGTGGA | + |
|
Preference number: 5 (lower is better) Translates to: SEERPCLKEIRQKVVEDIDRNSV*LLFTSG Trigger: TCCACTGGTGAACAATAACAAAACTGAATTTCTGTC...GATGTCTTCTACCACCTTCTGCCTTATTTCCTTGAGACAAGGCCTCTCTTCACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS CCA 90 bp | AGCCTCTGCAGCGTTCGATCAGATGTTAAGACTTTTGAACTACTATaGGCTTCAAAATATTCTTCTACCAAGTCACTCGCTTTGTCTCTT | + |
|
Preference number: 5 (lower is better) Translates to: SLCSVRSDVKTFELL*ASKYSSTKSLALSL Trigger: AAGAGACAAAGCGAGTGACTTGGTAGAAGAATATTTTGAAGCCCATAGTAGTTCAAAAGTCTTAACATCTGATCGAACGCTGCAGAGGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027198.12 ENSMUST00000114325.8 |
||
| CDS-3UTR CAA 90 bp | ATGCTTTCTAGATTGGACACATGCTCCACATATGCACACATCCCTTGTACTTCTAACATGAATGGAATCTaGAAGCATGGTGGTTCGAAA | + |
|
Preference number: 5 (lower is better) Translates to: MLSRLDTCSTYAHIPCTSNMNGI*KHGGSK Trigger: TTTCGAACCACCATGCTTCAAGATTCCATTCATGTT...AGAAGTACAAGGGATGTGTGCATATGTGGAGCATGTGTCCAATCTAGAAAGCAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS-3UTR CAA 90 bp | ATACCACATTCCACACAAGCAAAGTGCAGACCAGCAGGTTTCATGTTACCAATGATTTGGCTATCCAAATaGTGGATAAGAAGGAAGAGT | + |
|
Preference number: 5 (lower is better) Translates to: IPHSTQAKCRPAGFMLPMIWLSK*WIRRKS Trigger: ACTCTTCCTTCTTATCCACAATTTGGATAGCCAAAT...CATTGGTAACATGAAACCTGCTGGTCTGCACTTTGCTTGTGTGGAATGTGGTAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS-3UTR CAA 90 bp | AGTATTAGAGACAGTACACCAGCCAGGCTAATCAAAGTTCAAATTGATGCTATGAGAATTTGCTGGCTATaGTCTCCTCTTAACATTTGG | + |
|
Preference number: 5 (lower is better) Translates to: SIRDSTPARLIKVQIDAMRICWL*SPLNIW Trigger: CCAAATGTTAAGAGGAGACAATAGCCAGCAAATTCT...CATAGCATCAATTTGAACTTTGATTAGCCTGGCTGGTGTACTGTCTCTAATACT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027198.12 |
||
| CDS CCA 90 bp | GACAACTGTCCAAGAATTTGCTGGCTATTGTCTCCTCTTAACATTTaGCTATCCAAATTGTGGATAAGAAGGAAGAGTTCTAAAGAAGAA | + |
|
Preference number: 5 (lower is better) Translates to: DNCPRICWLLSPLNI*LSKLWIRRKSSKEE Trigger: TTCTTCTTTAGAACTCTTCCTTCTTATCCACAATTTGGATAGCCAAATGTTAAGAGGAGACAATAGCCAGCAAATTCTTGGACAGTTGTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027198.12 ENSMUST00000114325.8 |
||
| CDS TCA 72 bp | ATCCCCCTTGCATTGGGGGTAAGGCTTCGTAAGACATaGATCAGAGAACTAAGTGGCAGAGATCCAGACTGC | + |
|
Preference number: 6 (lower is better) Translates to: IPLALGVRLRKT*IRELSGRDPDC Trigger: GCAGTCTGGATCTCTGCCACTTAGTTCTCTGATTCATGTCTTACGAAGCCTTACCCCCAATGCAAGGGGGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000027198.12 ENSMUST00000114325.8 |
||
| CDS CCA 72 bp | TTCTCAGTAAGTTATGCAGAGTTTTCTGATCCACTCTaGCTCTCCTCAGCCTCTGCAGCGTTCGATCAGATG | + |
|
Preference number: 6 (lower is better) Translates to: FSVSYAEFSDPL*LSSASAAFDQM Trigger: CATCTGATCGAACGCTGCAGAGGCTGAGGAGAGCCAGAGTGGATCAGAAAACTCTGCATAACTTACTGAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027198.12 ENSMUST00000114325.8 |
||
| CDS CAA 90 bp | CAGTGTCTCTTTGGAAACAGGAGCTGGAAGAAGTCTATTCTGACCTaGACTCTTCTGAGAGAGCCTGGCCACATTAGTGTCTTCTTCTTC | + |
|
Preference number: 6 (lower is better) Translates to: QCLFGNRSWKKSILT*TLLREPGHISVFFF Trigger: GAAGAAGAAGACACTAATGTGGCCAGGCTCTCTCAGAAGAGTCAAGGTCAGAATAGACTTCTTCCAGCTCCTGTTTCCAAAGAGACACTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027198.12 ENSMUST00000114325.8 |
||
| CDS TCA 72 bp | GGCACAAATTTTCTCAGTAAGTTATGCAGAGTTTTCTaGTCCACTCTGGCTCTCCTCAGCCTCTGCAGCGTT | + |
|
Preference number: 6 (lower is better) Translates to: GTNFLSKLCRVF*STLALLSLCSV Trigger: AACGCTGCAGAGGCTGAGGAGAGCCAGAGTGGATCAGAAAACTCTGCATAACTTACTGAGAAAATTTGTGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027198.12 ENSMUST00000114325.8 |
||
| CDS TCA 72 bp | CCGTTTCCCAAGGATTCTCCTTCTCTGTCCAGAATGTaGCTAAGAACATCATCATCTCCCACAAACTGCACG | + |
|
Preference number: 6 (lower is better) Translates to: PFPKDSPSLSRM*LRTSSSPTNCT Trigger: CGTGCAGTTTGTGGGAGATGATGATGTTCTTAGTCACATTCTGGACAGAGAAGGAGAATCCTTGGGAAACGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114325.8 |
||
| CDS CAA 90 bp | TGGCTCTCCTCAGCCTCTGCAGCGTTCGATCAGATGTTAAGACTTTaGAACTACTATGGGCTTCAAAATATTCTTCTACCAAGTCACTCG | + |
|
Preference number: 6 (lower is better) Translates to: WLSSASAAFDQMLRL*NYYGLQNILLPSHS Trigger: CGAGTGACTTGGTAGAAGAATATTTTGAAGCCCATAGTAGTTCAAAAGTCTTAACATCTGATCGAACGCTGCAGAGGCTGAGGAGAGCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027198.12 ENSMUST00000114325.8 |
||
| CDS GCA 72 bp | CTGGGCTCGGAGTGTGAGATCACTGTTAACAAGGAATaGTTCCCTACACTGCTGGTAAAAATCTTGAAAAGA | + |
|
Preference number: 6 (lower is better) Translates to: LGSECEITVNKE*FPTLLVKILKR Trigger: TCTTTTCAAGATTTTTACCAGCAGTGTAGGGAAGCATTCCTTGTTAACAGTGATCTCACACTCCGAGCCCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027198.12 ENSMUST00000114325.8 |
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| CDS CAA 72 bp | TCTGTTTATTATCCAGTCCCGCTGATCCAGAACACTTaGGAAAGTACCCACATGACTGAGGACATCTTCAGT | + |
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Preference number: 6 (lower is better) Translates to: SVYYPVPLIQNT*ESTHMTEDIFS Trigger: ACTGAAGATGTCCTCAGTCATGTGGGTACTTTCCAAAGTGTTCTGGATCAGCGGGACTGGATAATAAACAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027198.12 ENSMUST00000114325.8 |
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| CDS TCA 72 bp | TTCTTCTTCGTCTTTTGTAGCCTCTTCATCATCCTCTaGGCTGGAAGCAGAATACTCACTCTCACTGTCATA | + |
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Preference number: 6 (lower is better) Translates to: FFFVFCSLFIIL*AGSRILTLTVI Trigger: TATGACAGTGAGAGTGAGTATTCTGCTTCCAGCTCAGAGGATGATGAAGAGGCTACAAAAGACGAAGAAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027198.12 ENSMUST00000114325.8 |
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| CDS TCA 72 bp | ATGACTGAGGACATCTTCAGTTATAGAGTTCAGGATTaGTTTCACACTGACGCCAGGAAAGTAGCCGTTGAT | + |
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Preference number: 6 (lower is better) Translates to: MTEDIFSYRVQD*FHTDARKVAVD Trigger: ATCAACGGCTACTTTCCTGGCGTCAGTGTGAAATCAATCCTGAACTCTATAACTGAAGATGTCCTCAGTCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027198.12 ENSMUST00000114325.8 |
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| CDS CCA 72 bp | CTTTTTCTTAGGCAGTGTCTCTTTGGAAACAGGAGCTaGAAGAAGTCTATTCTGACCTTGACTCTTCTGAGA | + |
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Preference number: 6 (lower is better) Translates to: LFLRQCLFGNRS*KKSILTLTLLR Trigger: TCTCAGAAGAGTCAAGGTCAGAATAGACTTCTTCCAGCTCCTGTTTCCAAAGAGACACTGCCTAAGAAAAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027198.12 ENSMUST00000114325.8 |
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| CDS TCA 72 bp | AATCTCTCTTGGACCCCAAGCCATAAAGCACAATGTTaGACCCAAGGTGTAACTGAAGCATCCATTTATGAA | + |
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Preference number: 6 (lower is better) Translates to: NLSWTPSHKAQC*TQGVTEASIYE Trigger: TTCATAAATGGATGCTTCAGTTACACCTTGGGTTCAACATTGTGCTTTATGGCTTGGGGTCCAAGAGAGATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027198.12 ENSMUST00000114325.8 |
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| CDS CAA 72 bp | TCTACACCATCAGTTCCCTTCTTTGTTCTTATAAGTTaGTGGTCCCTAAATTCAGTTAACTGGGCTCGGAGT | + |
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Preference number: 6 (lower is better) Translates to: STPSVPFFVLIS*WSLNSVNWARS Trigger: ACTCCGAGCCCAGTTAACTGAATTTAGGGACCACAAACTTATAAGAACAAAGAAGGGAACTGATGGTGTAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027198.12 ENSMUST00000114325.8 |
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| CDS CAA 90 bp | CTGAGCTGGAAGCAGAATACTCACTCTCACTGTCATAATGAGACCTaGACGCTATTATTCTTTTCCTTAGATTATGAGGTTGTGTTGACA | + |
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Preference number: 6 (lower is better) Translates to: LSWKQNTHSHCHNET*TLLFFSLDYEVVLT Trigger: TGTCAACACAACCTCATAATCTAAGGAAAAGAATAATAGCGTCAAGGTCTCATTATGACAGTGAGAGTGAGTATTCTGCTTCCAGCTCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027198.12 ENSMUST00000114325.8 |
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| CDS CAA 90 bp | TTCTTTAAATCTGTTTATTATCCAGTCCCGCTGATCCAGAACACTTaGGAAAGTACCCACATGACTGAGGACATCTTCAGTTATAGAGTT | + |
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Preference number: 6 (lower is better) Translates to: FFKSVYYPVPLIQNT*ESTHMTEDIFSYRV Trigger: AACTCTATAACTGAAGATGTCCTCAGTCATGTGGGTACTTTCCAAAGTGTTCTGGATCAGCGGGACTGGATAATAAACAGATTTAAAGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027198.12 ENSMUST00000114325.8 |
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| CDS GCA 72 bp | TACACGTTATGTAATGATGACAACTGTCCAAGAATTTaGTGGCTATTGTCTCCTCTTAACATTTGGCTATCC | + |
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Preference number: 6 (lower is better) Translates to: YTLCNDDNCPRI*WLLSPLNIWLS Trigger: GGATAGCCAAATGTTAAGAGGAGACAATAGCCAGCAAATTCTTGGACAGTTGTCATCATTACATAACGTGTA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027198.12 ENSMUST00000114325.8 |
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| CDS CAA 72 bp | TGTAATGATGACAACTGTCCAAGAATTTGCTGGCTATaGTCTCCTCTTAACATTTGGCTATCCAAATTGTGG | + |
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Preference number: 6 (lower is better) Translates to: CNDDNCPRICWL*SPLNIWLSKLW Trigger: CCACAATTTGGATAGCCAAATGTTAAGAGGAGACAATAGCCAGCAAATTCTTGGACAGTTGTCATCATTACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027198.12 ENSMUST00000114325.8 |
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| CDS CAA 90 bp | TACACGTTATGTAATGATGACAACTGTCCAAGAATTTGCTGGCTATaGTCTCCTCTTAACATTTGGCTATCCAAATTGTGGATAAGAAGG | + |
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Preference number: 6 (lower is better) Translates to: YTLCNDDNCPRICWL*SPLNIWLSKLWIRR Trigger: CCTTCTTATCCACAATTTGGATAGCCAAATGTTAAGAGGAGACAATAGCCAGCAAATTCTTGGACAGTTGTCATCATTACATAACGTGTA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027198.12 ENSMUST00000114325.8 |
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| CDS CAA 72 bp | CTGAAGCATCCATTTATGAAACAGTTTCTCATGCTGTaGATTCAATCGTTCAATTTCAGCAGAAAAGGAAGG | + |
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Preference number: 6 (lower is better) Translates to: LKHPFMKQFLML*IQSFNFSRKGR Trigger: CCTTCCTTTTCTGCTGAAATTGAACGATTGAATCAACAGCATGAGAAACTGTTTCATAAATGGATGCTTCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027198.12 ENSMUST00000114325.8 |
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