RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OPRM1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000000766

Ensembl transcript IDs: ENSMUST00000000783.13, ENSMUST00000063036.14, ENSMUST00000078634.12, ENSMUST00000092729.11, ENSMUST00000092731.11, ENSMUST00000105597.8, ENSMUST00000105601.9, ENSMUST00000105602.8, ENSMUST00000105603.2, ENSMUST00000105604.8, ENSMUST00000105605.8, ENSMUST00000105607.8, ENSMUST00000105611.8, ENSMUST00000123861.8, ENSMUST00000129221.8, ENSMUST00000129954.8, ENSMUST00000143875.2, ENSMUST00000144264.8, ENSMUST00000147171.8, ENSMUST00000150374.8, ENSMUST00000152674.2, ENSMUST00000154906.8, ENSMUST00000154941.8

Found 701 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGGCTCCCGCCAAGCCCCGTGCGGTTAGGACCGCATGGGTCGGACTaGTTGCCATCAACGTGGGACAAGTTGAGCCAGGAGCCAGGTGCT +
Preference number: 1 (lower is better)
Translates to: WLPPSPVRLGPHGSD*LPSTWDKLSQEPGA
Trigger: AGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTGATGGCAACCAGTCCGACCCATGCGGTCCTAACCGCACGGGGCTTGGCGGGAGCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
3UTR CCA 90 bp GCACAGGCTGTGGCTCCCGCCAAGCCCCGTGCGGTTAGGACCGCATaGGTCGGACTGGTTGCCATCAACGTGGGACAAGTTGAGCCAGGA +
Preference number: 1 (lower is better)
Translates to: AQAVAPAKPRAVRTA*VGLVAINVGQVEPG
Trigger: TCCTGGCTCAACTTGTCCCACGTTGATGGCAACCAGTCCGACCCATGCGGTCCTAACCGCACGGGGCTTGGCGGGAGCCACAGCCTGTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
3UTR CCA 90 bp CCCGTGCGGTTAGGACCGCATGGGTCGGACTGGTTGCCATCAACGTaGGACAAGTTGAGCCAGGAGCCAGGTGCTGGGGAGCAACTTGCA +
Preference number: 1 (lower is better)
Translates to: PVRLGPHGSDWLPST*DKLSQEPGAGEQLA
Trigger: TGCAAGTTGCTCCCCAGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTGATGGCAACCAGTCCGACCCATGCGGTCCTAACCGCACGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
3UTR GCA 90 bp GTGGAGAGACAGCTAGCACCATGGTGGCCAAGGCCTCCCTCTGGCTaGTCCTCTGCAGGACTTGGTAGTGAATCCTTTTTATGTGACTCC +
Preference number: 1 (lower is better)
Translates to: VERQLAPWWPRPPSG*SSAGLGSESFLCDS
Trigger: GGAGTCACATAAAAAGGATTCACTACCAAGTCCTGCAGAGGAGCAGCCAGAGGGAGGCCTTGGCCACCATGGTGCTAGCTGTCTCTCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
3UTR CCA 90 bp GCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGGATACAAGGAAATaGTATGCTGTGAAAGAAGATGGCCCCCAGGCTCAAAGACAAGGG +
Preference number: 1 (lower is better)
Translates to: ATLTARVGFREDTRK*YAVKEDGPQAQRQG
Trigger: CCCTTGTCTTTGAGCCTGGGGGCCATCTTCTTTCACAGCATACCATTTCCTTGTATCCTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
3UTR GCA 90 bp GCTGACTGCCAGGGTTGGCTTCAGAGAGGATACAAGGAAATGGTATaGTGTGAAAGAAGATGGCCCCCAGGCTCAAAGACAAGGGACAGG +
Preference number: 1 (lower is better)
Translates to: ADCQGWLQRGYKEMV*CERRWPPGSKTRDR
Trigger: CCTGTCCCTTGTCTTTGAGCCTGGGGGCCATCTTCTTTCACAGCATACCATTTCCTTGTATCCTCTCTGAAGCCAACCCTGGCAGTCAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
3UTR CCA 90 bp CTTCTACTCTCTGGCTGTGCAAGATCCACACTGACATGCAAACACTaGGTGTGGAAGGGAGTCGAAGGCAGCGTTAGAGAATCTGAAGGG +
Preference number: 1 (lower is better)
Translates to: LLLSGCARSTLTCKH*VWKGVEGSVRESEG
Trigger: CCCTTCAGATTCTCTAACGCTGCCTTCGACTCCCTTCCACACCCAGTGTTTGCATGTCAGTGTGGATCTTGCACAGCCAGAGAGTAGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
3UTR CCA 90 bp CCAAGTAGATGGCAGCCTCTAAGTTTAGCGAGGGTCTGGATGGCGTaGGACCCAGTTAGGGCAATGGAGCAGTTTCTGCTTCCAGATTTT +
Preference number: 1 (lower is better)
Translates to: PSRWQPLSLARVWMA*DPVRAMEQFLLPDF
Trigger: AAAATCTGGAAGCAGAAACTGCTCCATTGCCCTAACTGGGTCCCACGCCATCCAGACCCTCGCTAAACTTAGAGGCTGCCATCTACTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152674.2
3UTR CCA 90 bp AACCTGATTCCAAGTAGATGGCAGCCTCTAAGTTTAGCGAGGGTCTaGATGGCGTGGGACCCAGTTAGGGCAATGGAGCAGTTTCTGCTT +
Preference number: 1 (lower is better)
Translates to: NLIPSRWQPLSLARV*MAWDPVRAMEQFLL
Trigger: AAGCAGAAACTGCTCCATTGCCCTAACTGGGTCCCACGCCATCCAGACCCTCGCTAAACTTAGAGGCTGCCATCTACTTGGAATCAGGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152674.2
3UTR GCA 90 bp GAACGTGAGGGTGCAATCTATGGACCCCTGCCTGTATTTTGTGGTTaGCATGAACATTACGGGCAGACCAATGGCAGAAGAGAGGATCCA +
Preference number: 1 (lower is better)
Translates to: EREGAIYGPLPVFCG*HEHYGQTNGRREDP
Trigger: TGGATCCTCTCTTCTGCCATTGGTCTGCCCGTAATGTTCATGGCAACCACAAAATACAGGCAGGGGTCCATAGATTGCACCCTCACGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
3UTR TCA 90 bp TCCAATTATCTTCCCTTCTACTCTCTGGCTGTGCAAGATCCACACTaGCATGCAAACACTGGGTGTGGAAGGGAGTCGAAGGCAGCGTTA +
Preference number: 1 (lower is better)
Translates to: SNYLPFYSLAVQDPH*HANTGCGRESKAAL
Trigger: TAACGCTGCCTTCGACTCCCTTCCACACCCAGTGTTTGCATGTCAGTGTGGATCTTGCACAGCCAGAGAGTAGAAGGGAAGATAATTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
3UTR TCA 90 bp GGTCACACTCACCTGTCCATGCAACTCTTGCAGGGTTTTTCAACATaGGTCGGAGAAGGATATCCTGTAAAGATCTGGGCCACGCTGACT +
Preference number: 1 (lower is better)
Translates to: GHTHLSMQLLQGFST*VGEGYPVKIWATLT
Trigger: AGTCAGCGTGGCCCAGATCTTTACAGGATATCCTTCTCCGACTCATGTTGAAAAACCCTGCAAGAGTTGCATGGACAGGTGAGTGTGACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000123861.8
3UTR GCA 90 bp TTATCTTCCCTTCTACTCTCTGGCTGTGCAAGATCCACACTGACATaGAAACACTGGGTGTGGAAGGGAGTCGAAGGCAGCGTTAGAGAA +
Preference number: 1 (lower is better)
Translates to: LSSLLLSGCARSTLT*KHWVWKGVEGSVRE
Trigger: TTCTCTAACGCTGCCTTCGACTCCCTTCCACACCCAGTGTTTGCATGTCAGTGTGGATCTTGCACAGCCAGAGAGTAGAAGGGAAGATAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
3UTR CCA 90 bp AGGAAAGGCTTATGTGTCTCGATGTGGATAACAACGAGTGGGGCATaGGGAGGAAGCAGCAGAGAAACCCATTTTTGCCTGGCTTTGATT +
Preference number: 1 (lower is better)
Translates to: RKGLCVSMWITTSGA*GGSSRETHFCLALI
Trigger: AATCAAAGCCAGGCAAAAATGGGTTTCTCTGCTGCTTCCTCCCCATGCCCCACTCGTTGTTATCCACATCGAGACACATAAGCCTTTCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
3UTR TCA 90 bp TTCCTCATTCCTCTGTCCATGCAACTCTTGCAGGGTTTTTCAACATaGGTCGGAGAAGGATATCCTGTAAAGATCTGGGCCACGCTGACT +
Preference number: 1 (lower is better)
Translates to: FLIPLSMQLLQGFST*VGEGYPVKIWATLT
Trigger: AGTCAGCGTGGCCCAGATCTTTACAGGATATCCTTCTCCGACTCATGTTGAAAAACCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000105601.9
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
3UTR TCA 90 bp ATGAAGACACAGATTTTGAGCAGGTTCTCCCAGTACCATGTGGGATaGGAGAACGTGAGGGTGCAATCTATGGACCCCTGCCTGTATTTT +
Preference number: 1 (lower is better)
Translates to: MKTQILSRFSQYHVG*ENVRVQSMDPCLYF
Trigger: AAAATACAGGCAGGGGTCCATAGATTGCACCCTCACGTTCTCTCATCCCACATGGTACTGGGAGAACCTGCTCAAAATCTGTGTCTTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
3UTR GCA 90 bp GTCTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATaGAACTCTTGCAGGGTTTTTCAACATGAGTCGGAGAAGGATATC +
Preference number: 1 (lower is better)
Translates to: VLGHHQEEGSSFLCP*NSCRVFQHESEKDI
Trigger: GATATCCTTCTCCGACTCATGTTGAAAAACCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000105601.9
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
3UTR GCA 90 bp GTGCCAGGAAACAGTCTGGAAAGTGGTTTCTGGAATCGTGATCAGTaGTTTGATGATGACATAGATGTGGATGGGGGTCCAGCAGACAAT +
Preference number: 1 (lower is better)
Translates to: VPGNSLESGFWNRDQ*FDDDIDVDGGPADN
Trigger: ATTGTCTGCTGGACCCCCATCCACATCTATGTCATCATCAAAGCACTGATCACGATTCCAGAAACCACTTTCCAGACTGTTTCCTGGCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
3UTR CCA 90 bp CAATGGAGAGATGGAAGTCTGGGGAGATACAGAGGCAATTCCATGTaGCTCCTACTTACAATCACATACATGACCAGGAAGTTTCCAAAG +
Preference number: 1 (lower is better)
Translates to: QWRDGSLGRYRGNSM*LLLTITYMTRKFPK
Trigger: CTTTGGAAACTTCCTGGTCATGTATGTGATTGTAAGTAGGAGCCACATGGAATTGCCTCTGTATCTCCCCAGACTTCCATCTCTCCATTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
3UTR TCA 90 bp GGGAGGAAGCAGCAGAGAAACCCATTTTTGCCTGGCTTTGATTTCTaGGCTGGAAGCAGGGAGATAAATTTGTTAATAATTGCCTTTGAG +
Preference number: 1 (lower is better)
Translates to: GRKQQRNPFLPGFDF*AGSREINLLIIAFE
Trigger: CTCAAAGGCAATTATTAACAAATTTATCTCCCTGCTTCCAGCTCAGAAATCAAAGCCAGGCAAAAATGGGTTTCTCTGCTGCTTCCTCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
3UTR TCA 90 bp GTTCTAATTCTAGGGCAAACTTGTAGGTCAATGATCTTCTGGTCATaGAGAGATGCCATTCAACAACCATTGGCATGGAATGTTCTCCCA +
Preference number: 1 (lower is better)
Translates to: VLILGQTCRSMIFWS*RDAIQQPLAWNVLP
Trigger: TGGGAGAACATTCCATGCCAATGGTTGTTGAATGGCATCTCTTCATGACCAGAAGATCATTGACCTACAAGTTTGCCCTAGAATTAGAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105605.8
3UTR TCA 90 bp TTAGGACAGTGTAGTGCTTCTACATCTAAAATATGTCACACCCCCTaGCATTGTCTATTGAGCATTGCTAACCATAATAGTGTTCTACAA +
Preference number: 1 (lower is better)
Translates to: LGQCSASTSKICHTP*HCLLSIANHNSVLQ
Trigger: TTGTAGAACACTATTATGGTTAGCAATGCTCAATAGACAATGTCAGGGGGTGTGACATATTTTAGATGTAGAAGCACTACACTGTCCTAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000154906.8
3UTR CAA 90 bp CTCCCGCCAAGCCCCGTGCGGTTAGGACCGCATGGGTCGGACTGGTaGCCATCAACGTGGGACAAGTTGAGCCAGGAGCCAGGTGCTGGG +
Preference number: 2 (lower is better)
Translates to: LPPSPVRLGPHGSDW*PSTWDKLSQEPGAG
Trigger: CCCAGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTGATGGCAACCAGTCCGACCCATGCGGTCCTAACCGCACGGGGCTTGGCGGGAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
3UTR-3UTR GCA 90 bp CCCCGTGCGGTTAGGACCGCATGGGTCGGACTGGTTGCCATCAACGTGGGACAAGAGCCAGGAGCCAGGTaGTGGGGAGCAACTTGCAGG +
Preference number: 2 (lower is better)
Translates to: PRAVRTAWVGLVAINVGQEPGAR*WGATCR
Trigger: CCTGCAAGTTGCTCCCCAGCACCTGGCTCCTGGCTC...TTGTCCCACGTTGATGGCAACCAGTCCGACCCATGCGGTCCTAACCGCACGGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
3UTR CAA 90 bp TTAGGACCGCATGGGTCGGACTGGTTGCCATCAACGTGGGACAAGTaGAGCCAGGAGCCAGGTGCTGGGGAGCAACTTGCAGGAGCTAAG +
Preference number: 2 (lower is better)
Translates to: LGPHGSDWLPSTWDK*SQEPGAGEQLAGAK
Trigger: CTTAGCTCCTGCAAGTTGCTCCCCAGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTGATGGCAACCAGTCCGACCCATGCGGTCCTAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
3UTR-3UTR GCA 90 bp AGGCATCTTCCCTCTCGCTGTCTTCTAGCAGAGCCTGCACCTCCACACTGCTCACCTGCACCTCCACACTaGTCACCAGCTCATCCCTGT +
Preference number: 2 (lower is better)
Translates to: RHLPSRCLLAEPAPPHCSPAPPH*SPAHPC
Trigger: ACAGGGATGAGCTGGTGAGCAGTGTGGAGGTGCAGG...TGAGCAGTGTGGAGGTGCAGGCTCTGCTAGAAGACAGCGAGAGGGAAGATGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR-3UTR TCA 90 bp GTCTTAGAGGAAGCAACCAAGCAGCCACGCCCCTGTGAGCCTGGGAGGGAGATCCCTGGCTTTGATTTCTaGGCTGGAAGCAGGGAGATA +
Preference number: 2 (lower is better)
Translates to: VLEEATKQPRPCEPGREIPGFDF*AGSREI
Trigger: TATCTCCCTGCTTCCAGCTCAGAAATCAAAGCCAGG...GATCTCCCTCCCAGGCTCACAGGGGCGTGGCTGCTTGGTTGCTTCCTCTAAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
3UTR-3UTR GCA 90 bp ACCTCCACACTGCTCACCAGCTCATCCCTGTGTTCAGATGACATTCACCTGCCACCTGCACCTCCACACTaGTCACCAGCTCATCCCTGT +
Preference number: 2 (lower is better)
Translates to: TSTLLTSSSLCSDDIHLPPAPPH*SPAHPC
Trigger: ACAGGGATGAGCTGGTGAGCAGTGTGGAGGTGCAGG...TGGCAGGTGAATGTCATCTGAACACAGGGATGAGCTGGTGAGCAGTGTGGAGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063036.14
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR-3UTR CCA 90 bp TTATGTGTCTCGATGTGGATAACAACGAGTGGGGCATGGGGAGGAAGCAGCAGAAGACAGCTAGCACCATaGTGGCCAAGGCCTCCCTCT +
Preference number: 2 (lower is better)
Translates to: LCVSMWITTSGAWGGSSRRQLAP*WPRPPS
Trigger: AGAGGGAGGCCTTGGCCACCATGGTGCTAGCTGTCT...TCTGCTGCTTCCTCCCCATGCCCCACTCGTTGTTATCCACATCGAGACACATAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
3UTR-3UTR CCA 90 bp AGAGCTTGGGGCTCTGCTTCCATTAGAGGAAGGTCAGGTGGGTCAGGAAGGATAGTGGATAACAACGAGTaGGGCATGGGGAGGAAGCAG +
Preference number: 2 (lower is better)
Translates to: RAWGSASIRGRSGGSGRIVDNNE*GMGRKQ
Trigger: CTGCTTCCTCCCCATGCCCCACTCGTTGTTATCCAC...TATCCTTCCTGACCCACCTGACCTTCCTCTAATGGAAGCAGAGCCCCAAGCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
3UTR-3UTR CCA 90 bp GACCAGGAAGTTTCCAAAGAGGCCCACTACACACACGATAGAATAGAGGGCCATCCGCATGGGTCGGACTaGTTGCCATCAACGTGGGAC +
Preference number: 2 (lower is better)
Translates to: DQEVSKEAHYTHDRIEGHPHGSD*LPSTWD
Trigger: GTCCCACGTTGATGGCAACCAGTCCGACCCATGCGG...ATGGCCCTCTATTCTATCGTGTGTGTAGTGGGCCTCTTTGGAAACTTCCTGGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
3UTR-3UTR TCA 90 bp AGAAGATGGCCCCCAGGCTCAAAGACAAGGGACAGGTCACACTGGATGCTGTACATCCCTGTGTTCAGATaGCATTCACCTGCCAAGCTG +
Preference number: 2 (lower is better)
Translates to: RRWPPGSKTRDRSHWMLYIPVFR*HSPAKL
Trigger: CAGCTTGGCAGGTGAATGTCATCTGAACACAGGGAT...GTACAGCATCCAGTGTGACCTGTCCCTTGTCTTTGAGCCTGGGGGCCATCTTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR-3UTR TCA 90 bp CGGAGAAGGATATCCTGTAAAGATCTGGGCCACGCTGACTGCCAGGGTTGGCTTATCCCTGTGTTCAGATaGCATTCACCTGCCAAGCTG +
Preference number: 2 (lower is better)
Translates to: RRRISCKDLGHADCQGWLIPVFR*HSPAKL
Trigger: CAGCTTGGCAGGTGAATGTCATCTGAACACAGGGAT...AAGCCAACCCTGGCAGTCAGCGTGGCCCAGATCTTTACAGGATATCCTTCTCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000129221.8
ENSMUST00000144264.8
ENSMUST00000154941.8
3UTR-3UTR TCA 90 bp AACATGAGTCGGAGAAGGATATCCTGTAAAGATCTGGGCCACGCTGACTGCCAGGCCTCCCACAAACCCTaGCAGCAACCTGATTCCAAG +
Preference number: 2 (lower is better)
Translates to: NMSRRRISCKDLGHADCQASHKP*QQPDSK
Trigger: CTTGGAATCAGGTTGCTGTCAGGGTTTGTGGGAGGC...CTGGCAGTCAGCGTGGCCCAGATCTTTACAGGATATCCTTCTCCGACTCATGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147171.8
3UTR-3UTR CCA 90 bp AGGTCACACTGGATGCTGTACACACCCTCTCTGGGAGTCCAGCTTTTTCTTCTGATTCACCTGCCAAGCTaGCCTTCCCCGGATTCCTGT +
Preference number: 2 (lower is better)
Translates to: RSHWMLYTPSLGVQLFLLIHLPS*PSPDSC
Trigger: ACAGGAATCCGGGGAAGGCCAGCTTGGCAGGTGAAT...CAGAAGAAAAAGCTGGACTCCCAGAGAGGGTGTGTACAGCATCCAGTGTGACCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR-3UTR TCA 90 bp GCGTGGGACCCAGTTAGGGCAATGGAGCAGTTTCTGCTTCCAGATTTTCTAGCTTGGGATGAGAGAACGTaGGGGTGCAATCTATGGACC +
Preference number: 2 (lower is better)
Translates to: AWDPVRAMEQFLLPDFLAWDERT*GCNLWT
Trigger: GGTCCATAGATTGCACCCTCACGTTCTCTCATCCCA...AGCTAGAAAATCTGGAAGCAGAAACTGCTCCATTGCCCTAACTGGGTCCCACGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
3UTR-3UTR TCA 90 bp GCTTTGGGCCTGATGGCCTGCAGGGGACTTGTCAAGCCTGATAGTACGAGGTGCATATGTCACACCCCCTaGCATTGTCTATTGAGCATT +
Preference number: 2 (lower is better)
Translates to: ALGLMACRGLVKPDSTRCICHTP*HCLLSI
Trigger: AATGCTCAATAGACAATGTCAGGGGGTGTGACATAT...GCACCTCGTACTATCAGGCTTGACAAGTCCCCTGCAGGCCATCAGGCCCAAAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000154906.8
3UTR-3UTR CCA 90 bp TCCTGTCTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAAATTCACCTGCCAAGCTaGCCTTCCCCGGATTCCTGT +
Preference number: 2 (lower is better)
Translates to: SCLGPSSGRRFLIPLSMQIHLPS*PSPDSC
Trigger: ACAGGAATCCGGGGAAGGCCAGCTTGGCAGGTGAAT...TTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGACAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105601.9
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
3UTR-3UTR CCA 90 bp CTGTCTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTATTCACCTGCCAAGCTaGCCTTCCCCGGATTCCTGT +
Preference number: 2 (lower is better)
Translates to: LSWAIIRKKVPHSSVHATIHLPS*PSPDSC
Trigger: ACAGGAATCCGGGGAAGGCCAGCTTGGCAGGTGAAT...AGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105601.9
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
3UTR-3UTR TCA 90 bp CCTACTTACAATCACATACATGACCAGGAAGTTTCCAAAGAGGCCCACTACACACAACGTGGGACAAGTTaGGCCAGGAGCCAGGTGCTG +
Preference number: 2 (lower is better)
Translates to: PTYNHIHDQEVSKEAHYTQRGTS*ARSQVL
Trigger: CAGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTG...TGTGTAGTGGGCCTCTTTGGAAACTTCCTGGTCATGTATGTGATTGTAAGTAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
3UTR-3UTR GCA 90 bp GTTCTCCCAGTACCATGTGGGATGAGAGAACGTGAGGGTGCAATCTATGGACCCCAATCTATGGACCCCTaGCTGTATTTTGTGGTTGCC +
Preference number: 2 (lower is better)
Translates to: VLPVPCGMREREGAIYGPQSMDP*LYFVVA
Trigger: GGCAACCACAAAATACAGGCAGGGGTCCATAGATTG...GGGTCCATAGATTGCACCCTCACGTTCTCTCATCCCACATGGTACTGGGAGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
3UTR-3UTR GCA 90 bp TTGTTTATTTGCACACAGTGGCATGAGAGCGGTGTCCACAGAAGCCACATTGCCACAGGTCACACTGGATaGTGTACACACCCTCTCTGG +
Preference number: 2 (lower is better)
Translates to: LFICTQWHESGVHRSHIATGHTG*CTHPLW
Trigger: CCAGAGAGGGTGTGTACAGCATCCAGTGTGACCTGT...GGCAATGTGGCTTCTGTGGACACCGCTCTCATGCCACTGTGTGCAAATAAACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR-3UTR CCA 90 bp GGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGGGTTTTTCAACATGAGTCGATTCACCTGCCAAGCTaGCCTTCCCCGGATTCCTGT +
Preference number: 2 (lower is better)
Translates to: GSSFLCPCNSCRVFQHESIHLPS*PSPDSC
Trigger: ACAGGAATCCGGGGAAGGCCAGCTTGGCAGGTGAAT...CGACTCATGTTGAAAAACCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000105601.9
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
3UTR-3UTR CCA 90 bp GGTTGGCTGGTGGTTAGTTCGATCCACTGTATTAGCCGTGGAGGGGTGTTCCCTTTTGCTGTTCGATTGTaGAGGAAGTTGGGATGCAGA +
Preference number: 2 (lower is better)
Translates to: GWLVVSSIHCISRGGVFPFAVRL*RKLGCR
Trigger: TCTGCATCCCAACTTCCTCCACAATCGAACAGCAAA...AGGGAACACCCCTCCACGGCTAATACAGTGGATCGAACTAACCACCAGCCAACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
3UTR-3UTR CCA 90 bp CATTCCTCTGTCCATGCAACTCTTGCAGGGTTTTTCAACATGAGTCGGAGAAGGGCTGACTGCCAGGGTTaGCTGGTGGTTAGTTCGATC +
Preference number: 2 (lower is better)
Translates to: HSSVHATLAGFFNMSRRRADCQG*LVVSSI
Trigger: GATCGAACTAACCACCAGCCAACCCTGGCAGTCAGC...CCTTCTCCGACTCATGTTGAAAAACCCTGCAAGAGTTGCATGGACAGAGGAATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105601.9
3UTR-3UTR CCA 90 bp GCGTGGGACCCAGTTAGGGCAATGGAGCAGTTTCTGCTTCCAGATTTTCTAGCTTTACGGGCAGACCAATaGCAGAAGAGAGGATCCAGT +
Preference number: 2 (lower is better)
Translates to: AWDPVRAMEQFLLPDFLALRADQ*QKRGSS
Trigger: ACTGGATCCTCTCTTCTGCCATTGGTCTGCCCGTAA...AGCTAGAAAATCTGGAAGCAGAAACTGCTCCATTGCCCTAACTGGGTCCCACGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
3UTR-3UTR CCA 90 bp CTTCTAGCAGAGCCTGCACCTCCACACTGCTCACCAGCTCATCCCTGTGTTCAGTCCCCAAGTTATCTTTaGTCATGGTGTTCATTGCAG +
Preference number: 2 (lower is better)
Translates to: LLAEPAPPHCSPAHPCVQSPSYL*SWCSLQ
Trigger: CTGCAATGAACACCATGACCAAAGATAACTTGGGGA...CTGAACACAGGGATGAGCTGGTGAGCAGTGTGGAGGTGCAGGCTCTGCTAGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129221.8
3UTR-3UTR CCA 90 bp CTGTCTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTGCTGACTGCCAGGGTTaGCTTCAGAGAGGATACAAG +
Preference number: 2 (lower is better)
Translates to: LSWAIIRKKVPHSSVHATADCQG*LQRGYK
Trigger: CTTGTATCCTCTCTGAAGCCAACCCTGGCAGTCAGC...AGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
3UTR-3UTR TCA 90 bp TTGTTTATTTGCACACAGTGGCATGAGAGCGGTGTCCACAGAAGCCACATTGCCATCCCTGTGTTCAGATaGCATTCACCTGCCAAGCTG +
Preference number: 2 (lower is better)
Translates to: LFICTQWHESGVHRSHIAIPVFR*HSPAKL
Trigger: CAGCTTGGCAGGTGAATGTCATCTGAACACAGGGAT...GGCAATGTGGCTTCTGTGGACACCGCTCTCATGCCACTGTGTGCAAATAAACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063036.14
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR-3UTR TCA 90 bp GACCCCTGCCTGTATTTTGTGGTTGCCATGAACATTACGGGCAGACCAATGGCACTGCCAGAGCAAGGTTaGAAATGTAGATGTTGGTGG +
Preference number: 2 (lower is better)
Translates to: DPCLYFVVAMNITGRPMALPEQG*KCRCWW
Trigger: CCACCAACATCTACATTTTCAACCTTGCTCTGGCAG...TGCCATTGGTCTGCCCGTAATGTTCATGGCAACCACAAAATACAGGCAGGGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
3UTR-3UTR TCA 90 bp CCGGATTCCTGTCTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCTCTTATGATGGACTGTaGCTGATCAGCCAAGCAAAC +
Preference number: 2 (lower is better)
Translates to: PDSCLGPSSGRRFLIPLSSYDGL*LISQAN
Trigger: GTTTGCTTGGCTGATCAGTCACAGTCCATCATAAGA...GGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGACAGGAATCCGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR-3UTR GCA 90 bp CAGGCTCAAAGACAAGGGACAGGTCACACTGGATGCTGTACACACCCTCTCTGGAGTTCCTTGTTTATTTaGACACAGTGGCATGAGAGC +
Preference number: 2 (lower is better)
Translates to: QAQRQGTGHTGCCTHPLWSSLFI*TQWHES
Trigger: GCTCTCATGCCACTGTGTGCAAATAAACAAGGAACT...CCAGAGAGGGTGTGTACAGCATCCAGTGTGACCTGTCCCTTGTCTTTGAGCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR-3UTR GCA 90 bp ATGTGTCTCGATGTGGATAACAACGAGTGGGGCATGGGGAGGAAGCAGCAGAGAGCTGGTCACATGTATTaGATTAGGCACACTTCCCAT +
Preference number: 2 (lower is better)
Translates to: MCLDVDNNEWGMGRKQQRAGHMY*IRHTSH
Trigger: ATGGGAAGTGTGCCTAATGCAATACATGTGACCAGC...TCTCTGCTGCTTCCTCCCCATGCCCCACTCGTTGTTATCCACATCGAGACACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
3UTR-3UTR GCA 90 bp GCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGGATACAAGGAAATGGTATGCTTCTCTTCCTTCTGAGTaGTTGACACAGTCTGAGTGT +
Preference number: 2 (lower is better)
Translates to: ATLTARVGFREDTRKWYASLPSE*LTQSEC
Trigger: ACACTCAGACTGTGTCAAGCACTCAGAAGGAAGAGA...AGCATACCATTTCCTTGTATCCTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147171.8
3UTR-3UTR CCA 90 bp CATTCCTCTGTCCATGCAACTCTTGCAGGGTTTTTCAACATGAGTCGGAGAAGGTATCCTGTAAAGATCTaGGCCACGCTGACTGCCAGG +
Preference number: 2 (lower is better)
Translates to: HSSVHATLAGFFNMSRRRYPVKI*ATLTAR
Trigger: CCTGGCAGTCAGCGTGGCCCAGATCTTTACAGGATA...CCTTCTCCGACTCATGTTGAAAAACCCTGCAAGAGTTGCATGGACAGAGGAATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000105601.9
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
3UTR-3UTR CCA 90 bp CAGTCTTCATTTTGGTATATCCTTAATTACTGGCTAAGGGTGGTCAGGAATGCACCAGGAGCCAGGTGCTaGGGAGCAACTTGCAGGAGC +
Preference number: 2 (lower is better)
Translates to: QSSFWYILNYWLRVVRNAPGARC*GATCRS
Trigger: GCTCCTGCAAGTTGCTCCCCAGCACCTGGCTCCTGG...TGCATTCCTGACCACCCTTAGCCAGTAATTAAGGATATACCAAAATGAAGACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
3UTR CAA 90 bp CGTGGAGGGGTGTTCCCTAGTGTTTTGACGGATTCGAGCAGAGTTTaGCTGTTCGATTGTGGAGGAAGTTGGGATGCAGAACTCTCTAAA +
Preference number: 2 (lower is better)
Translates to: RGGVFPSVLTDSSRV*LFDCGGSWDAELSK
Trigger: TTTAGAGAGTTCTGCATCCCAACTTCCTCCACAATCGAACAGCAAAACTCTGCTCGAATCCGTCAAAACACTAGGGAACACCCCTCCACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000105597.8
ENSMUST00000105601.9
ENSMUST00000123861.8
ENSMUST00000150374.8
3UTR CAA 90 bp AGTTCGATCCACTGTATTAGCCGTGGAGGGGTGTTCCCTAGTGTTTaGACGGATTCGAGCAGAGTTTTGCTGTTCGATTGTGGAGGAAGT +
Preference number: 2 (lower is better)
Translates to: SSIHCISRGGVFPSV*TDSSRVLLFDCGGS
Trigger: ACTTCCTCCACAATCGAACAGCAAAACTCTGCTCGAATCCGTCAAAACACTAGGGAACACCCCTCCACGGCTAATACAGTGGATCGAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000105597.8
ENSMUST00000105601.9
ENSMUST00000123861.8
ENSMUST00000150374.8
3UTR-3UTR TCA 90 bp CCGGATTCCTGTCTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCTTCTTTGGCTTCTTATaGTGGACTGTGACTGATCAG +
Preference number: 2 (lower is better)
Translates to: PDSCLGPSSGRRFLIPLSFFGFL*WTVTDQ
Trigger: CTGATCAGTCACAGTCCATCATAAGAAGCCAAAGAA...GGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGACAGGAATCCGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR-3UTR TCA 90 bp ATTTTGTGTGTCTGTGGATGTATTCAGGACACATTTGAATGCATGGGAGTGAGATCACAGCTTTGGGCCTaGTGGCCTGCAGGGGACTTG +
Preference number: 2 (lower is better)
Translates to: ILCVCGCIQDTFECMGVRSQLWA*WPAGDL
Trigger: CAAGTCCCCTGCAGGCCATCAGGCCCAAAGCTGTGA...TCTCACTCCCATGCATTCAAATGTGTCCTGAATACATCCACAGACACACAAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154906.8
3UTR-3UTR GCA 90 bp ACCTCCACACTGCTCACCAGCTCATCCCTGTGTTCAGATGACATTCACCTGCCATGTAAGGTGACTAGGTaGTTCCTAAGGAAGTTCCTT +
Preference number: 2 (lower is better)
Translates to: TSTLLTSSSLCSDDIHLPCKVTR*FLRKFL
Trigger: AAGGAACTTCCTTAGGAAGCACCTAGTCACCTTACA...TGGCAGGTGAATGTCATCTGAACACAGGGATGAGCTGGTGAGCAGTGTGGAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063036.14
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR-3UTR CCA 90 bp ACAGAAGCCACATTGCCATGTTTAACAGGCTGTCTCTACATTGCCAAGTCATTCATTCACCTGCCAAGCTaGCCTTCCCCGGATTCCTGT +
Preference number: 2 (lower is better)
Translates to: TEATLPCLTGCLYIAKSFIHLPS*PSPDSC
Trigger: ACAGGAATCCGGGGAAGGCCAGCTTGGCAGGTGAAT...GAATGACTTGGCAATGTAGAGACAGCCTGTTAAACATGGCAATGTGGCTTCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063036.14
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR-3UTR CCA 90 bp CCGGATTCCTGTCTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCGATTGTGGAGGAAGTTaGGATGCAGAACTCTCTAAA +
Preference number: 2 (lower is better)
Translates to: PDSCLGPSSGRRFLIPLSDCGGS*DAELSK
Trigger: TTTAGAGAGTTCTGCATCCCAACTTCCTCCACAATC...GGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGACAGGAATCCGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105601.9
3UTR-3UTR CCA 90 bp TCCTCTGTCCATGCAACTCTTGCAGGGTTTTTCAACATGAGTCGGAGAAGGATATATCCTGTAAAGATCTaGGCCACGCTGACTGCCAGG +
Preference number: 2 (lower is better)
Translates to: SSVHATLAGFFNMSRRRIYPVKI*ATLTAR
Trigger: CCTGGCAGTCAGCGTGGCCCAGATCTTTACAGGATA...TATCCTTCTCCGACTCATGTTGAAAAACCCTGCAAGAGTTGCATGGACAGAGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000105601.9
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
3UTR-3UTR CCA 90 bp GCGTGGGACCCAGTTAGGGCAATGGAGCAGTTTCTGCTTCCAGATTTTCTAGCTTGCCAGGAAACAGTCTaGAAAGTGGTTTCTGGAATC +
Preference number: 2 (lower is better)
Translates to: AWDPVRAMEQFLLPDFLACQETV*KVVSGI
Trigger: GATTCCAGAAACCACTTTCCAGACTGTTTCCTGGCA...AGCTAGAAAATCTGGAAGCAGAAACTGCTCCATTGCCCTAACTGGGTCCCACGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
3UTR-3UTR CCA 90 bp TCCTGTAAAGATCTGGGCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGGATACCTTGAGTTCCTTCTTTaGCTTCTTATGATGGACTGT +
Preference number: 2 (lower is better)
Translates to: SCKDLGHADCQGWLQRGYLEFLL*LLMMDC
Trigger: ACAGTCCATCATAAGAAGCCAAAGAAGGAACTCAAG...GTATCCTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGCCCAGATCTTTACAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR-3UTR CCA 90 bp TGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAATGCTGAGCAAGCCATaGAGAGCCAATCAATCAGCA +
Preference number: 2 (lower is better)
Translates to: WAIIRKKVPHSSVHATLAMLSKP*RANQSA
Trigger: TGCTGATTGATTGGCTCTCCATGGCTTGCTCAGCAT...TGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR-3UTR CCA 90 bp TCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGGGTTTTTCAGCTGACTGCCAGGGTTaGCTTCAGAGAGGATACAAG +
Preference number: 2 (lower is better)
Translates to: SGRRFLIPLSMQLLQGFSADCQG*LQRGYK
Trigger: CTTGTATCCTCTCTGAAGCCAACCCTGGCAGTCAGC...TGAAAAACCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
3UTR-3UTR TCA 90 bp GTCCATGCAACTCTTGCAGGGTTTTTCAACATGAGTCGGAGAAGGATATCCTGTATCCCTGTGTTCAGATaGCATTCACCTGCCAAGCTG +
Preference number: 2 (lower is better)
Translates to: VHATLAGFFNMSRRRISCIPVFR*HSPAKL
Trigger: CAGCTTGGCAGGTGAATGTCATCTGAACACAGGGAT...ACAGGATATCCTTCTCCGACTCATGTTGAAAAACCCTGCAAGAGTTGCATGGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000129221.8
ENSMUST00000144264.8
ENSMUST00000154941.8
3UTR-3UTR TCA 90 bp CTGCCTGTATTTTGTGGTTGCCATGAACATTACGGGCAGACCAATGGCAGAAGACTGCCAGAGCAAGGTTaGAAATGTAGATGTTGGTGG +
Preference number: 2 (lower is better)
Translates to: LPVFCGCHEHYGQTNGRRLPEQG*KCRCWW
Trigger: CCACCAACATCTACATTTTCAACCTTGCTCTGGCAG...TCTTCTGCCATTGGTCTGCCCGTAATGTTCATGGCAACCACAAAATACAGGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
3UTR-3UTR GCA 90 bp AGCCACATTGCCATGTTTAACAGGCTGTCTCTACATTGCCAAGTCATTCGTATGACAGGTCACACTGGATaGTGTACACACCCTCTCTGG +
Preference number: 2 (lower is better)
Translates to: SHIAMFNRLSLHCQVIRMTGHTG*CTHPLW
Trigger: CCAGAGAGGGTGTGTACAGCATCCAGTGTGACCTGT...CATACGAATGACTTGGCAATGTAGAGACAGCCTGTTAAACATGGCAATGTGGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR-3UTR CCA 90 bp TTCCTGTCTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCATTTGCTGTTCGATTGTaGAGGAAGTTGGGATGCAGA +
Preference number: 2 (lower is better)
Translates to: FLSWAIIRKKVPHSSVHAFAVRL*RKLGCR
Trigger: TCTGCATCCCAACTTCCTCCACAATCGAACAGCAAA...TGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGACAGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105601.9
3UTR-3UTR CCA 90 bp GTTGCCATGAACATTACGGGCAGACCAATGGCAGAAGAGAGGATCCAGTTGCAGTTTGGTATATCTTTGTaGTGGTCGACCAGTTGCCTT +
Preference number: 2 (lower is better)
Translates to: VAMNITGRPMAEERIQLQFGISL*WSTSCL
Trigger: AAGGCAACTGGTCGACCACCACAAAGATATACCAAA...CTGCAACTGGATCCTCTCTTCTGCCATTGGTCTGCCCGTAATGTTCATGGCAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105597.8
3UTR-3UTR CCA 90 bp CTACTTACAATCACATACATGACCAGGAAGTTTCCAAAGAGGCCCACTACACACTGGTTGCCATCAACGTaGGACAAGTTGAGCCAGGAG +
Preference number: 2 (lower is better)
Translates to: LLTITYMTRKFPKRPTTHWLPST*DKLSQE
Trigger: CTCCTGGCTCAACTTGTCCCACGTTGATGGCAACCA...GTGTGTAGTGGGCCTCTTTGGAAACTTCCTGGTCATGTATGTGATTGTAAGTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
3UTR CAA 90 bp ATCCTTAATTACTGGCTAAGGGTGGTCAGGAATGCAGGTAGTCATTaGGACCAATGGAGAGATGGAAGTCTGGGGAGATACAGAGGCAAT +
Preference number: 2 (lower is better)
Translates to: ILNYWLRVVRNAGSH*DQWRDGSLGRYRGN
Trigger: ATTGCCTCTGTATCTCCCCAGACTTCCATCTCTCCATTGGTCCAAATGACTACCTGCATTCCTGACCACCCTTAGCCAGTAATTAAGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
3UTR-3UTR TCA 90 bp CGTGATCAGTGCTTTGATGATGACATAGATGTGGATGGGGGTCCAGCAGACAATTCCAGTTGCAGACATTaGCAATTTTGGCATTTCGGG +
Preference number: 2 (lower is better)
Translates to: RDQCFDDDIDVDGGPADNSSCRH*QFWHFG
Trigger: CCCGAAATGCCAAAATTGTCAATGTCTGCAACTGGA...ATTGTCTGCTGGACCCCCATCCACATCTATGTCATCATCAAAGCACTGATCACG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
3UTR-3UTR TCA 90 bp GGAAACAGTCTGGAAAGTGGTTTCTGGAATCGTGATCAGTGCTTTGATGATGACGCATGCGGACACTCTTaGGTCGTAAGATCATCAGTC +
Preference number: 2 (lower is better)
Translates to: GNSLESGFWNRDQCFDDDACGHS*VVRSSV
Trigger: GACTGATGATCTTACGACTCAAGAGTGTCCGCATGC...GTCATCATCAAAGCACTGATCACGATTCCAGAAACCACTTTCCAGACTGTTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
3UTR-3UTR TCA 90 bp GTCACCTTCTATGTTGATCACAATTCACATACCACAGAGTATTGTGGTCCATTGGCCTCCCACAAACCCTaGCAGCAACCTGATTCCAAG +
Preference number: 2 (lower is better)
Translates to: VTFYVDHNSHTTEYCGPLASHKP*QQPDSK
Trigger: CTTGGAATCAGGTTGCTGTCAGGGTTTGTGGGAGGC...CAATGGACCACAATACTCTGTGGTATGTGAATTGTGATCAACATAGAAGGTGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000152674.2
3UTR-3UTR TCA 90 bp GGGTCACCTTCTATGTTGATCACAATTCACATACCACAGAGTATTGTGGTCCATGTGCTTGACACAGTCTaGGTGTCTCTGACGTGTAGC +
Preference number: 2 (lower is better)
Translates to: GSPSMLITIHIPQSIVVHVLDTV*VSLTCS
Trigger: GCTACACGTCAGAGACACTCAGACTGTGTCAAGCAC...ATGGACCACAATACTCTGTGGTATGTGAATTGTGATCAACATAGAAGGTGACCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000152674.2
3UTR-3UTR GCA 90 bp AACACGCAATACGGCAAACCAGACAATACATTAGACATTACACTTACAACTCCTCCTGCACCTCCACACTaGTCACCAGCTCATCCCTGT +
Preference number: 2 (lower is better)
Translates to: NTQYGKPDNTLDITLTTPPAPPH*SPAHPC
Trigger: ACAGGGATGAGCTGGTGAGCAGTGTGGAGGTGCAGG...AGGAGTTGTAAGTGTAATGTCTAATGTATTGTCTGGTTTGCCGTATTGCGTGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR-3UTR GCA 90 bp TGTTTATTTGCACACAGTGGCATGAGAGCGGTGTCCACAGAAGCCACATTGCCATCATTCCTCTGTCCATaGAACTCTTGCAGGGTTTTT +
Preference number: 2 (lower is better)
Translates to: CLFAHSGMRAVSTEATLPSFLCP*NSCRVF
Trigger: AAAAACCCTGCAAGAGTTGCATGGACAGAGGAATGA...TGGCAATGTGGCTTCTGTGGACACCGCTCTCATGCCACTGTGTGCAAATAAACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR-3UTR CCA 90 bp GAGGGTGCAATCTATGGACCCCTGCCTGTATTTTGTGGTTGCCATGAACATTACTTTGCTGTTCGATTGTaGAGGAAGTTGGGATGCAGA +
Preference number: 2 (lower is better)
Translates to: EGAIYGPLPVFCGCHEHYFAVRL*RKLGCR
Trigger: TCTGCATCCCAACTTCCTCCACAATCGAACAGCAAA...GTAATGTTCATGGCAACCACAAAATACAGGCAGGGGTCCATAGATTGCACCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
3UTR-3UTR CCA 90 bp GCGTGGGACCCAGTTAGGGCAATGGAGCAGTTTCTGCTTCCAGATTTTCTAGCTTGGCAGTCTTCATTTTaGTATATCTTTGTGGTGGTC +
Preference number: 2 (lower is better)
Translates to: AWDPVRAMEQFLLPDFLAWQSSF*YIFVVV
Trigger: GACCACCACAAAGATATACCAAAATGAAGACTGCCA...AGCTAGAAAATCTGGAAGCAGAAACTGCTCCATTGCCCTAACTGGGTCCCACGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105597.8
3UTR-3UTR TCA 90 bp GGCAATTCCATGTGGCTCCTACTTACAATCACATACATGACCAGGAAGTTTCCACTGCCAGAGCAAGGTTaGAAATGTAGATGTTGGTGG +
Preference number: 2 (lower is better)
Translates to: GNSMWLLLTITYMTRKFPLPEQG*KCRCWW
Trigger: CCACCAACATCTACATTTTCAACCTTGCTCTGGCAG...TGGAAACTTCCTGGTCATGTATGTGATTGTAAGTAGGAGCCACATGGAATTGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
3UTR-3UTR TCA 90 bp GTGACTGGGCTAGAGGTCAGAGGTAGCTTTTCCTTTATGCATCACTACAGTGAAGTTTCTCTCCTTTTATaGGAAGTGCTGGACAAGGTG +
Preference number: 2 (lower is better)
Translates to: VTGLEVRGSFSFMHHYSEVSLLL*EVLDKV
Trigger: CACCTTGTCCAGCACTTCTCATAAAAGGAGAGAAAC...TTCACTGTAGTGATGCATAAAGGAAAAGCTACCTCTGACCTCTAGCCCAGTCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000152674.2
3UTR-3UTR GCA 90 bp CATTCCTCTGTCCATGCAACTCTTGCAGGGTTTTTCAACATGAGTCGGAGAAGGTGTAAGGTGACTAGGTaGTTCCTAAGGAAGTTCCTT +
Preference number: 2 (lower is better)
Translates to: HSSVHATLAGFFNMSRRRCKVTR*FLRKFL
Trigger: AAGGAACTTCCTTAGGAAGCACCTAGTCACCTTACA...CCTTCTCCGACTCATGTTGAAAAACCCTGCAAGAGTTGCATGGACAGAGGAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR-3UTR GCA 90 bp AAATTTAAATCCTTACTCTTTCAAAGTGATGGGCAAGAGTTTGAAAGCCCCTTAAGGCCTCCCTCTGGCTaGTCCTCTGCAGGACTTGGT +
Preference number: 2 (lower is better)
Translates to: KFKSLLFQSDGQEFESPLRPPSG*SSAGLG
Trigger: ACCAAGTCCTGCAGAGGAGCAGCCAGAGGGAGGCCT...TAAGGGGCTTTCAAACTCTTGCCCATCACTTTGAAAGAGTAAGGATTTAAATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
3UTR-3UTR GCA 90 bp GAAGTGCCAGGAAACAGTCTGGAAAGTGGTTTCTGGAATCGTGATCAGTGCTTTCCTGTATTTTGTGGTTaGCATGAACATTACGGGCAG +
Preference number: 2 (lower is better)
Translates to: EVPGNSLESGFWNRDQCFPVFCG*HEHYGQ
Trigger: CTGCCCGTAATGTTCATGGCAACCACAAAATACAGG...AAAGCACTGATCACGATTCCAGAAACCACTTTCCAGACTGTTTCCTGGCACTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
3UTR-3UTR GCA 90 bp GATCAGTGCTTTGATGATGACATAGATGTGGATGGGGGTCCAGCAGACAATAAACAATCTATGGACCCCTaGCTGTATTTTGTGGTTGCC +
Preference number: 2 (lower is better)
Translates to: DQCFDDDIDVDGGPADNKQSMDP*LYFVVA
Trigger: GGCAACCACAAAATACAGGCAGGGGTCCATAGATTG...TTTATTGTCTGCTGGACCCCCATCCACATCTATGTCATCATCAAAGCACTGATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
3UTR-3UTR CCA 90 bp GAACGCATAAAGAACTGGGTTCAGGCAGCTGTTTGTGTAACCCAAGGCAATGCAGATTGTGGAGGAAGTTaGGATGCAGAACTCTCTAAA +
Preference number: 2 (lower is better)
Translates to: ERIKNWVQAAVCVTQGNADCGGS*DAELSK
Trigger: TTTAGAGAGTTCTGCATCCCAACTTCCTCCACAATC...TGCATTGCCTTGGGTTACACAAACAGCTGCCTGAACCCAGTTCTTTATGCGTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
3UTR-3UTR CCA 90 bp GGGTTTTTCAACATGAGTCGGAGAAGGATATCCTGTAAAGATCTGGGCCACGCTGATTGTGGAGGAAGTTaGGATGCAGAACTCTCTAAA +
Preference number: 2 (lower is better)
Translates to: GFFNMSRRRISCKDLGHADCGGS*DAELSK
Trigger: TTTAGAGAGTTCTGCATCCCAACTTCCTCCACAATC...AGCGTGGCCCAGATCTTTACAGGATATCCTTCTCCGACTCATGTTGAAAAACCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
3UTR-3UTR CCA 90 bp GAGGGTGCAATCTATGGACCCCTGCCTGTATTTTGTGGTTGCCATGAACATTACGATTGTGGAGGAAGTTaGGATGCAGAACTCTCTAAA +
Preference number: 2 (lower is better)
Translates to: EGAIYGPLPVFCGCHEHYDCGGS*DAELSK
Trigger: TTTAGAGAGTTCTGCATCCCAACTTCCTCCACAATC...GTAATGTTCATGGCAACCACAAAATACAGGCAGGGGTCCATAGATTGCACCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
3UTR-3UTR TCA 90 bp AGGGTCACCTTCTATGTTGATCACAATTCACATACCACAGAGTATTGTGGTCCATTCCTTCTGAGTGCTTaGCACAGTCTGAGTGTCTCT +
Preference number: 2 (lower is better)
Translates to: RVTFYVDHNSHTTEYCGPFLLSA*HSLSVS
Trigger: AGAGACACTCAGACTGTGTCAAGCACTCAGAAGGAA...TGGACCACAATACTCTGTGGTATGTGAATTGTGATCAACATAGAAGGTGACCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000152674.2
3UTR-3UTR GCA 90 bp TCCTCTGTCCATGCAACTCTTGCAGGGTTTTTCAACATGAGTCGGAGAAGGATAAGTTCCTTGTTTATTTaGACACAGTGGCATGAGAGC +
Preference number: 2 (lower is better)
Translates to: SSVHATLAGFFNMSRRRISSLFI*TQWHES
Trigger: GCTCTCATGCCACTGTGTGCAAATAAACAAGGAACT...TATCCTTCTCCGACTCATGTTGAAAAACCCTGCAAGAGTTGCATGGACAGAGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR-3UTR GCA 90 bp ATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGGGTTTTTCTCATTCCTCTGTCCATaGAACTCTTGCAGGGTTTTT +
Preference number: 2 (lower is better)
Translates to: IRKKVPHSSVHATLAGFFSFLCP*NSCRVF
Trigger: AAAAACCCTGCAAGAGTTGCATGGACAGAGGAATGA...GAAAAACCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000105601.9
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
3UTR-3UTR CCA 90 bp GCAGAGTTTTGCTGTTCGATTGTGGAGGAAGTTGGGATGCAGAACTCTCTAAAATTTGCTGTTCGATTGTaGAGGAAGTTGGGATGCAGA +
Preference number: 2 (lower is better)
Translates to: AEFCCSIVEEVGMQNSLKFAVRL*RKLGCR
Trigger: TCTGCATCCCAACTTCCTCCACAATCGAACAGCAAA...TTTTAGAGAGTTCTGCATCCCAACTTCCTCCACAATCGAACAGCAAAACTCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000105597.8
ENSMUST00000105601.9
ENSMUST00000123861.8
ENSMUST00000150374.8
3UTR-3UTR CCA 90 bp GGGTTTTTCAACATGAGTCGGAGAAGGATATCCTGTAAAGATCTGGGCCACGCTCTTGAGTTCCTTCTTTaGCTTCTTATGATGGACTGT +
Preference number: 2 (lower is better)
Translates to: GFFNMSRRRISCKDLGHALEFLL*LLMMDC
Trigger: ACAGTCCATCATAAGAAGCCAAAGAAGGAACTCAAG...AGCGTGGCCCAGATCTTTACAGGATATCCTTCTCCGACTCATGTTGAAAAACCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR-3UTR TCA 90 bp CATAGGGAAGGGTCACCTTCTATGTTGATCACAATTCACATACCACAGAGTATTGGATGTTTCTGTACATaGGCTGGATTCAGTAGTGGC +
Preference number: 2 (lower is better)
Translates to: HREGSPSMLITIHIPQSIGCFCT*AGFSSG
Trigger: GCCACTACTGAATCCAGCTCATGTACAGAAACATCC...AATACTCTGTGGTATGTGAATTGTGATCAACATAGAAGGTGACCCTTCCCTATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000152674.2
3UTR-3UTR GCA 90 bp AGCCACATTGCCATGTTTAACAGGCTGTCTCTACATTGCCAAGTCATTCGTATGTACAAGGAAATGGTATaGTGTGAAAGAAGATGGCCC +
Preference number: 2 (lower is better)
Translates to: SHIAMFNRLSLHCQVIRMYKEMV*CERRWP
Trigger: GGGCCATCTTCTTTCACAGCATACCATTTCCTTGTA...CATACGAATGACTTGGCAATGTAGAGACAGCCTGTTAAACATGGCAATGTGGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR-3UTR TCA 90 bp AATCTACTCATTCCATTACTGAAGTGTGAGGCTTGTCTGTGGGAGACAAACATTGGCATGAAAATATTTTaGCTCCTCCCACCATCTTGC +
Preference number: 2 (lower is better)
Translates to: NLLIPLLKCEACLWETNIGMKIF*LLPPSC
Trigger: GCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCC...AATGTTTGTCTCCCACAGACAAGCCTCACACTTCAGTAATGGAATGAGTAGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105604.8
3UTR-3UTR TCA 90 bp TCTCTACATTGCCAAGTCATTCGTATGAAAACACGCAATACGGCAAACCAGACATTCTTTGGCTTCTTATaGTGGACTGTGACTGATCAG +
Preference number: 2 (lower is better)
Translates to: SLHCQVIRMKTRNTANQTFFGFL*WTVTDQ
Trigger: CTGATCAGTCACAGTCCATCATAAGAAGCCAAAGAA...TGTCTGGTTTGCCGTATTGCGTGTTTTCATACGAATGACTTGGCAATGTAGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR-3UTR GCA 90 bp CATAGGGAAGGGTCACCTTCTATGTTGATCACAATTCACATACCACAGAGTATTTCCTTTTATGAGAAGTaGTGGACAAGGTGGCTCTCT +
Preference number: 2 (lower is better)
Translates to: HREGSPSMLITIHIPQSISFYEK*WTRWLS
Trigger: AGAGAGCCACCTTGTCCAGCACTTCTCATAAAAGGA...AATACTCTGTGGTATGTGAATTGTGATCAACATAGAAGGTGACCCTTCCCTATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152674.2
3UTR-3UTR CCA 90 bp GGCAAACCAGACAATACATTAGACATTACACTTACAACTCCTAACCTTTATGAGTGCAGATACTCCCAATaGCAAGTTGTGAGGGACTGC +
Preference number: 2 (lower is better)
Translates to: GKPDNTLDITLTTPNLYECRYSQ*QVVRDC
Trigger: GCAGTCCCTCACAACTTGCCATTGGGAGTATCTGCA...CTCATAAAGGTTAGGAGTTGTAAGTGTAATGTCTAATGTATTGTCTGGTTTGCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105611.8
3UTR-3UTR CCA 90 bp CATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGGGTTTTTGAGGATACAAGGAAATaGTATGCTGTGAAAGAAGAT +
Preference number: 2 (lower is better)
Translates to: HQEEGSSFLCPCNSCRVFEDTRK*YAVKED
Trigger: ATCTTCTTTCACAGCATACCATTTCCTTGTATCCTC...AAAAACCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
3UTR-3UTR TCA 90 bp GACTCTGAGTTTGACCTTGTGAACACTTGGAGGACATGGAAAGAATTGGTAAGACAACTATTCTGCAGTTaGCACTGTGTTTTAAATCCC +
Preference number: 2 (lower is better)
Translates to: DSEFDLVNTWRTWKELVRQLFCS*HCVLNP
Trigger: GGGATTTAAAACACAGTGTCAACTGCAGAATAGTTG...TCTTACCAATTCTTTCCATGTCCTCCAAGTGTTCACAAGGTCAAACTCAGAGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105607.8
3UTR-3UTR TCA 90 bp ACTGTGTTGGTCTTCCTTTGGAGTTCCACAGGAAGGCATGAAAATATTTTGACTTACTCATTCCATTACTaGAGTGTGAGGCTTGTCTGT +
Preference number: 2 (lower is better)
Translates to: TVLVFLWSSTGRHENILTYSFHY*SVRLVC
Trigger: ACAGACAAGCCTCACACTTCAGTAATGGAATGAGTA...AGTCAAAATATTTTCATGCCTTCCTGTGGAACTCCAAAGGAAGACCAACACAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105604.8
3UTR-3UTR TCA 90 bp AACACGCAATACGGCAAACCAGACAATACATTAGACATTACACTTACAACTCCTTCTTATGATGGACTGTaGCTGATCAGCCAAGCAAAC +
Preference number: 2 (lower is better)
Translates to: NTQYGKPDNTLDITLTTPSYDGL*LISQAN
Trigger: GTTTGCTTGGCTGATCAGTCACAGTCCATCATAAGA...AGGAGTTGTAAGTGTAATGTCTAATGTATTGTCTGGTTTGCCGTATTGCGTGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR-3UTR GCA 90 bp TCATGTAAGGTGACTAGGTGCTTCCTAAGGAAGTTCCTTGTTTATTTGCACACATCATTCCTCTGTCCATaGAACTCTTGCAGGGTTTTT +
Preference number: 2 (lower is better)
Translates to: SCKVTRCFLRKFLVYLHTSFLCP*NSCRVF
Trigger: AAAAACCCTGCAAGAGTTGCATGGACAGAGGAATGA...TGTGTGCAAATAAACAAGGAACTTCCTTAGGAAGCACCTAGTCACCTTACATGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR-3UTR TCA 90 bp GTACTCTGCTCTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGAACAGCATCTTGATTTaGCACTTGTCCCCTTTGGTG +
Preference number: 2 (lower is better)
Translates to: VLCSLWLHLPYGNKISLVNSILI*HLSPLV
Trigger: CACCAAAGGGGACAAGTGTCAAATCAAGATGCTGTT...CACCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAGAGCAGAGTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154906.8
3UTR-3UTR CCA 90 bp CAAGCTCTGCTTCCAGAGAGAGTTTTAGTATTTTGTGTGTCTGTGGATGTATTCGTACTCTGCTCTCTATaGTTACATTTGCCATATGGT +
Preference number: 2 (lower is better)
Translates to: QALLPERVLVFCVSVDVFVLCSL*LHLPYG
Trigger: ACCATATGGCAAATGTAACCATAGAGAGCAGAGTAC...GAATACATCCACAGACACACAAAATACTAAAACTCTCTCTGGAAGCAGAGCTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154906.8
3UTR-3UTR CCA 90 bp TCTTCATGTAAGGTGACTAGGTGCTTCCTAAGGAAGTTCCTTGTTTATTTGCACAGTTATCTTTGGTCATaGTGTTCATTGCAGCAACCA +
Preference number: 2 (lower is better)
Translates to: SSCKVTRCFLRKFLVYLHSYLWS*CSLQQP
Trigger: TGGTTGCTGCAATGAACACCATGACCAAAGATAACT...GTGCAAATAAACAAGGAACTTCCTTAGGAAGCACCTAGTCACCTTACATGAAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129221.8
3UTR CAA 90 bp TCCTTGAAATTAAAAATTCCACATAGGGAAGGGTCACCTTCTATGTaGATCACAATTCACATACCACAGAGTATTGTGGTCCATTGGATG +
Preference number: 2 (lower is better)
Translates to: SLKLKIPHREGSPSM*ITIHIPQSIVVHWM
Trigger: CATCCAATGGACCACAATACTCTGTGGTATGTGAATTGTGATCAACATAGAAGGTGACCCTTCCCTATGTGGAATTTTTAATTTCAAGGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000152674.2
3UTR-3UTR GCA 90 bp AGTCATTCGTATGAAAACACGCAATACGGCAAACCAGACAATACATTAGACATTTGTAAGGTGACTAGGTaGTTCCTAAGGAAGTTCCTT +
Preference number: 2 (lower is better)
Translates to: SHSYENTQYGKPDNTLDICKVTR*FLRKFL
Trigger: AAGGAACTTCCTTAGGAAGCACCTAGTCACCTTACA...AATGTCTAATGTATTGTCTGGTTTGCCGTATTGCGTGTTTTCATACGAATGACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR CAA 90 bp GAATTTTCGGGCTACGAATTTTCTCTAGTAAGCTCTCTATTTGTTTaGTATTTCAGTGTTCAGGAAACCTTGTCTAATCAGTCCGTTCAT +
Preference number: 2 (lower is better)
Translates to: EFSGYEFSLVSSLFV*YFSVQETLSNQSVH
Trigger: ATGAACGGACTGATTAGACAAGGTTTCCTGAACACTGAAATACAAAACAAATAGAGAGCTTACTAGAGAAAATTCGTAGCCCGAAAATTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105604.8
3UTR-3UTR TCA 90 bp AAATTTAAATCCTTACTCTTTCAAAGTGATGGGCAAGAGTTTGAAAGCCCCTTAGTTAATAATTGCCTTTaGGTTGGGAATGAATCTGCC +
Preference number: 2 (lower is better)
Translates to: KFKSLLFQSDGQEFESPLVNNCL*VGNESA
Trigger: GGCAGATTCATTCCCAACTCAAAGGCAATTATTAAC...TAAGGGGCTTTCAAACTCTTGCCCATCACTTTGAAAGAGTAAGGATTTAAATTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
3UTR-3UTR CCA 90 bp AGACATTGCTACTTATTTTCATACAGGTTTAAACCGCGGATCAATTCACAGCTTGTAACAAAATATCTTTaGTGTGCTTCTCCCAGTTCT +
Preference number: 2 (lower is better)
Translates to: RHCYLFSYRFKPRINSQLVTKYL*CASPSS
Trigger: AGAACTGGGAGAAGCACACCAAAGATATTTTGTTAC...AAGCTGTGAATTGATCCGCGGTTTAAACCTGTATGAAAATAAGTAGCAATGTCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154906.8
3UTR-3UTR CCA 90 bp TGCTCTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTTCTATTTTGTGTGTCTGTaGATGTATTCAGGACACATT +
Preference number: 2 (lower is better)
Translates to: CSLWLHLPYGNKISLVCFYFVCL*MYSGHI
Trigger: AATGTGTCCTGAATACATCCACAGACACACAAAATA...GAAGCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAGAGCA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154906.8
3UTR CCA 72 bp GTGGCTCCCGCCAAGCCCCGTGCGGTTAGGACCGCATaGGTCGGACTGGTTGCCATCAACGTGGGACAAGTT +
Preference number: 3 (lower is better)
Translates to: VAPAKPRAVRTA*VGLVAINVGQV
Trigger: AACTTGTCCCACGTTGATGGCAACCAGTCCGACCCATGCGGTCCTAACCGCACGGGGCTTGGCGGGAGCCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
3UTR CCA 72 bp CCAAGCCCCGTGCGGTTAGGACCGCATGGGTCGGACTaGTTGCCATCAACGTGGGACAAGTTGAGCCAGGAG +
Preference number: 3 (lower is better)
Translates to: PSPVRLGPHGSD*LPSTWDKLSQE
Trigger: CTCCTGGCTCAACTTGTCCCACGTTGATGGCAACCAGTCCGACCCATGCGGTCCTAACCGCACGGGGCTTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
3UTR CCA 72 bp TTAGGACCGCATGGGTCGGACTGGTTGCCATCAACGTaGGACAAGTTGAGCCAGGAGCCAGGTGCTGGGGAG +
Preference number: 3 (lower is better)
Translates to: LGPHGSDWLPST*DKLSQEPGAGE
Trigger: CTCCCCAGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTGATGGCAACCAGTCCGACCCATGCGGTCCTAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
3UTR TCA 72 bp ATGGGTCGGACTGGTTGCCATCAACGTGGGACAAGTTaGGCCAGGAGCCAGGTGCTGGGGAGCAACTTGCAG +
Preference number: 3 (lower is better)
Translates to: MGRTGCHQRGTS*ARSQVLGSNLQ
Trigger: CTGCAAGTTGCTCCCCAGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTGATGGCAACCAGTCCGACCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
3UTR CCA 72 bp TGGCCCCCAGGCTCAAAGACAAGGGACAGGTCACACTaGATGCTGTACACACCCTCTCTGGGAGTCCAGCTT +
Preference number: 3 (lower is better)
Translates to: WPPGSKTRDRSH*MLYTPSLGVQL
Trigger: AAGCTGGACTCCCAGAGAGGGTGTGTACAGCATCCAGTGTGACCTGTCCCTTGTCTTTGAGCCTGGGGGCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
3UTR GCA 72 bp ACCGCGGATCAATTCACAGCTTTGGGCCTGATGGCCTaGAGGGGACTTGTCAAGCCTGATAGTACGAGGTGC +
Preference number: 3 (lower is better)
Translates to: TADQFTALGLMA*RGLVKPDSTRC
Trigger: GCACCTCGTACTATCAGGCTTGACAAGTCCCCTGCAGGCCATCAGGCCCAAAGCTGTGAATTGATCCGCGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154906.8
3UTR GCA 72 bp CAGCTAGCACCATGGTGGCCAAGGCCTCCCTCTGGCTaGTCCTCTGCAGGACTTGGTAGTGAATCCTTTTTA +
Preference number: 3 (lower is better)
Translates to: QLAPWWPRPPSG*SSAGLGSESFL
Trigger: TAAAAAGGATTCACTACCAAGTCCTGCAGAGGAGCAGCCAGAGGGAGGCCTTGGCCACCATGGTGCTAGCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
3UTR CCA 72 bp TCACCTGCCAAGCTGGCCTTCCCCGGATTCCTGTCTTaGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCT +
Preference number: 3 (lower is better)
Translates to: SPAKLAFPGFLS*AIIRKKVPHSS
Trigger: AGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGACAGGAATCCGGGGAAGGCCAGCTTGGCAGGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105601.9
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
3UTR CCA 72 bp TGGCAGCCTCTAAGTTTAGCGAGGGTCTGGATGGCGTaGGACCCAGTTAGGGCAATGGAGCAGTTTCTGCTT +
Preference number: 3 (lower is better)
Translates to: WQPLSLARVWMA*DPVRAMEQFLL
Trigger: AAGCAGAAACTGCTCCATTGCCCTAACTGGGTCCCACGCCATCCAGACCCTCGCTAAACTTAGAGGCTGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152674.2
3UTR GCA 72 bp TCTCGCTGTCTTCTAGCAGAGCCTGCACCTCCACACTaGTCACCAGCTCATCCCTGTGTTCAGATGACATTC +
Preference number: 3 (lower is better)
Translates to: SRCLLAEPAPPH*SPAHPCVQMTF
Trigger: GAATGTCATCTGAACACAGGGATGAGCTGGTGAGCAGTGTGGAGGTGCAGGCTCTGCTAGAAGACAGCGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063036.14
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR GCA 72 bp CTTCTACTCTCTGGCTGTGCAAGATCCACACTGACATaGAAACACTGGGTGTGGAAGGGAGTCGAAGGCAGC +
Preference number: 3 (lower is better)
Translates to: LLLSGCARSTLT*KHWVWKGVEGS
Trigger: GCTGCCTTCGACTCCCTTCCACACCCAGTGTTTGCATGTCAGTGTGGATCTTGCACAGCCAGAGAGTAGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
3UTR CCA 72 bp CCCACAAACCCTGACAGCAACCTGATTCCAAGTAGATaGCAGCCTCTAAGTTTAGCGAGGGTCTGGATGGCG +
Preference number: 3 (lower is better)
Translates to: PTNPDSNLIPSR*QPLSLARVWMA
Trigger: CGCCATCCAGACCCTCGCTAAACTTAGAGGCTGCCATCTACTTGGAATCAGGTTGCTGTCAGGGTTTGTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105607.8
ENSMUST00000147171.8
ENSMUST00000152674.2
3UTR CCA 72 bp TCATCCCTGTGTTCAGATGACATTCACCTGCCAAGCTaGCCTTCCCCGGATTCCTGTCTTGGGCCATCATCA +
Preference number: 3 (lower is better)
Translates to: SSLCSDDIHLPS*PSPDSCLGPSS
Trigger: TGATGATGGCCCAAGACAGGAATCCGGGGAAGGCCAGCTTGGCAGGTGAATGTCATCTGAACACAGGGATGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000129221.8
ENSMUST00000144264.8
ENSMUST00000154941.8
3UTR-3UTR CAA 90 bp GACCAGGAAGTTTCCAAAGAGGCCCACTACACACACGATAGAATAGAGGGCCATTCAACGTGGGACAAGTaGAGCCAGGAGCCAGGTGCT +
Preference number: 3 (lower is better)
Translates to: DQEVSKEAHYTHDRIEGHSTWDK*SQEPGA
Trigger: AGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTGA...ATGGCCCTCTATTCTATCGTGTGTGTAGTGGGCCTCTTTGGAAACTTCCTGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
3UTR TCA 72 bp CTTCCCTTCTACTCTCTGGCTGTGCAAGATCCACACTaGCATGCAAACACTGGGTGTGGAAGGGAGTCGAAG +
Preference number: 3 (lower is better)
Translates to: LPFYSLAVQDPH*HANTGCGRESK
Trigger: CTTCGACTCCCTTCCACACCCAGTGTTTGCATGTCAGTGTGGATCTTGCACAGCCAGAGAGTAGAAGGGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
3UTR TCA 72 bp CAGATTTTGAGCAGGTTCTCCCAGTACCATGTGGGATaGGAGAACGTGAGGGTGCAATCTATGGACCCCTGC +
Preference number: 3 (lower is better)
Translates to: QILSRFSQYHVG*ENVRVQSMDPC
Trigger: GCAGGGGTCCATAGATTGCACCCTCACGTTCTCTCATCCCACATGGTACTGGGAGAACCTGCTCAAAATCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
3UTR GCA 72 bp AGAAGGATATCCTGTAAAGATCTGGGCCACGCTGACTaGCAGGGTTGGCTGGTGGTTAGTTCGATCCACTGT +
Preference number: 3 (lower is better)
Translates to: RRISCKDLGHAD*QGWLVVSSIHC
Trigger: ACAGTGGATCGAACTAACCACCAGCCAACCCTGGCAGTCAGCGTGGCCCAGATCTTTACAGGATATCCTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
3UTR CCA 72 bp TCTGGCTGTGCAAGATCCACACTGACATGCAAACACTaGGTGTGGAAGGGAGTCGAAGGCAGCGTTAGAGAA +
Preference number: 3 (lower is better)
Translates to: SGCARSTLTCKH*VWKGVEGSVRE
Trigger: TTCTCTAACGCTGCCTTCGACTCCCTTCCACACCCAGTGTTTGCATGTCAGTGTGGATCTTGCACAGCCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
3UTR-3UTR CAA 90 bp CCTCCACACTGCTCACCAGCTCATCCCTGTGTTCAGATGACATTCACCTGCCAATCCACAGAAGCCACATaGCCATGTTTAACAGGCTGT +
Preference number: 3 (lower is better)
Translates to: PPHCSPAHPCVQMTFTCQSTEAT*PCLTGC
Trigger: ACAGCCTGTTAAACATGGCAATGTGGCTTCTGTGGA...TTGGCAGGTGAATGTCATCTGAACACAGGGATGAGCTGGTGAGCAGTGTGGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063036.14
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR CCA 72 bp GGGACAGGTCACACTGGATGCTGTACACACCCTCTCTaGGAGTCCAGCTTTTTCTTCACAGAGTATTGTGGT +
Preference number: 3 (lower is better)
Translates to: GTGHTGCCTHPL*ESSFFFTEYCG
Trigger: ACCACAATACTCTGTGAAGAAAAAGCTGGACTCCCAGAGAGGGTGTGTACAGCATCCAGTGTGACCTGTCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000147171.8
3UTR-3UTR CAA 90 bp ACTTACAATCACATACATGACCAGGAAGTTTCCAAAGAGGCCCACTACACACACCATGGGTCGGACTGGTaGCCATCAACGTGGGACAAG +
Preference number: 3 (lower is better)
Translates to: TYNHIHDQEVSKEAHYTHHGSDW*PSTWDK
Trigger: CTTGTCCCACGTTGATGGCAACCAGTCCGACCCATG...GTGTGTGTAGTGGGCCTCTTTGGAAACTTCCTGGTCATGTATGTGATTGTAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
3UTR CCA 72 bp TTATGTGTCTCGATGTGGATAACAACGAGTGGGGCATaGGGAGGAAGCAGCAGAGAAACCCATTTTTGCCTG +
Preference number: 3 (lower is better)
Translates to: LCVSMWITTSGA*GGSSRETHFCL
Trigger: CAGGCAAAAATGGGTTTCTCTGCTGCTTCCTCCCCATGCCCCACTCGTTGTTATCCACATCGAGACACATAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
3UTR CCA 72 bp AGGGTGGTCAGGAATGCAGGTAGTCATTTGGACCAATaGAGAGATGGAAGTCTGGGGAGATACAGAGGCAAT +
Preference number: 3 (lower is better)
Translates to: RVVRNAGSHLDQ*RDGSLGRYRGN
Trigger: ATTGCCTCTGTATCTCCCCAGACTTCCATCTCTCCATTGGTCCAAATGACTACCTGCATTCCTGACCACCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
3UTR-3UTR CAA 90 bp AGGCATCTTCCCTCTCGCTGTCTTCTAGCAGAGCCTGCACCTCCACACTGCTCAAGCAATGTTTCTTTTTaGATCTCTGCTCCAGTTTCT +
Preference number: 3 (lower is better)
Translates to: RHLPSRCLLAEPAPPHCSSNVSF*ISAPVS
Trigger: AGAAACTGGAGCAGAGATCAAAAAAGAAACATTGCT...TGAGCAGTGTGGAGGTGCAGGCTCTGCTAGAAGACAGCGAGAGGGAAGATGCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR TCA 72 bp CCTCTGTCCATGCAACTCTTGCAGGGTTTTTCAACATaGGTCGGAGAAGGATATCCTGTAAAGATCTGGGCC +
Preference number: 3 (lower is better)
Translates to: PLSMQLLQGFST*VGEGYPVKIWA
Trigger: GGCCCAGATCTTTACAGGATATCCTTCTCCGACTCATGTTGAAAAACCCTGCAAGAGTTGCATGGACAGAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000105601.9
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
3UTR TCA 72 bp AATCTATGGACCCCTGCCTGTATTTTGTGGTTGCCATaGACATTACGGGCAGACCAATGGCAGAAGAGAGGA +
Preference number: 3 (lower is better)
Translates to: NLWTPACILWLP*TLRADQWQKRG
Trigger: TCCTCTCTTCTGCCATTGGTCTGCCCGTAATGTTCATGGCAACCACAAAATACAGGCAGGGGTCCATAGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
3UTR TCA 72 bp CACCTGTCCATGCAACTCTTGCAGGGTTTTTCAACATaGGTCGGAGAAGGATATCCTGTAAAGATCTGGGCC +
Preference number: 3 (lower is better)
Translates to: HLSMQLLQGFST*VGEGYPVKIWA
Trigger: GGCCCAGATCTTTACAGGATATCCTTCTCCGACTCATGTTGAAAAACCCTGCAAGAGTTGCATGGACAGGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000123861.8
3UTR CCA 72 bp TCTTCTGGTCATGAAGAGATGCCATTCAACAACCATTaGCATGGAATGTTCTCCCACAAGCGGTTGCCACTG +
Preference number: 3 (lower is better)
Translates to: SSGHEEMPFNNH*HGMFSHKRLPL
Trigger: CAGTGGCAACCGCTTGTGGGAGAACATTCCATGCCAATGGTTGTTGAATGGCATCTCTTCATGACCAGAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105605.8
3UTR-3UTR CAA 90 bp CAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGGGTTTTTCAATCCACAGAAGCCACATaGCCATGTTTAACAGGCTGT +
Preference number: 3 (lower is better)
Translates to: QEEGSSFLCPCNSCRVFQSTEAT*PCLTGC
Trigger: ACAGCCTGTTAAACATGGCAATGTGGCTTCTGTGGA...TTGAAAAACCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR-3UTR CAA 90 bp GACCCCTGCCTGTATTTTGTGGTTGCCATGAACATTACGGGCAGACCAATGGCATGTTGTAGTAGTCTATaGAGATCACGATCTTGCAGA +
Preference number: 3 (lower is better)
Translates to: DPCLYFVVAMNITGRPMACCSSL*RSRSCR
Trigger: TCTGCAAGATCGTGATCTCAATAGACTACTACAACA...TGCCATTGGTCTGCCCGTAATGTTCATGGCAACCACAAAATACAGGCAGGGGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
3UTR TCA 72 bp CTAAGGAAGTTCCTTGTTTATTTGCACACAGTGGCATaGGAGCGGTGTCCACAGAAGCCACATTGCCATGTT +
Preference number: 3 (lower is better)
Translates to: LRKFLVYLHTVA*ERCPQKPHCHV
Trigger: AACATGGCAATGTGGCTTCTGTGGACACCGCTCTCATGCCACTGTGTGCAAATAAACAAGGAACTTCCTTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR GCA 72 bp CATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATaGAACTCTTGCAGGGTTTTTCAACATGAGTCGGAG +
Preference number: 3 (lower is better)
Translates to: HHQEEGSSFLCP*NSCRVFQHESE
Trigger: CTCCGACTCATGTTGAAAAACCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000105601.9
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
3UTR CCA 72 bp GATGGAAGTCTGGGGAGATACAGAGGCAATTCCATGTaGCTCCTACTTACAATCACATACATGACCAGGAAG +
Preference number: 3 (lower is better)
Translates to: DGSLGRYRGNSM*LLLTITYMTRK
Trigger: CTTCCTGGTCATGTATGTGATTGTAAGTAGGAGCCACATGGAATTGCCTCTGTATCTCCCCAGACTTCCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
3UTR-3UTR CAA 90 bp CAGACCAATGGCAGAAGAGAGGATCCAGTTGCAGACATTGACAATTTTGGCATTAGTTTTGCTGTTCGATaGTGGAGGAAGTTGGGATGC +
Preference number: 3 (lower is better)
Translates to: QTNGRREDPVADIDNFGISFAVR*WRKLGC
Trigger: GCATCCCAACTTCCTCCACAATCGAACAGCAAAACT...AATGCCAAAATTGTCAATGTCTGCAACTGGATCCTCTCTTCTGCCATTGGTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
3UTR-3UTR CAA 90 bp AATGGAGCAGTTTCTGCTTCCAGATTTTCTAGCTGGTGGTTAGTTCGATCCACTAGCATGCGGACACTCTaGAGTCGTAAGATCATCAGT +
Preference number: 3 (lower is better)
Translates to: NGAVSASRFSSWWLVRSTSMRTL*SRKIIS
Trigger: ACTGATGATCTTACGACTCAAGAGTGTCCGCATGCT...AGTGGATCGAACTAACCACCAGCTAGAAAATCTGGAAGCAGAAACTGCTCCATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
3UTR-3UTR CAA 90 bp GGGTCACCTTCTATGTTGATCACAATTCACATACCACAGAGTATTGTGGTCCATCTTCCTTCTGAGTGCTaGACACAGTCTGAGTGTCTC +
Preference number: 3 (lower is better)
Translates to: GSPSMLITIHIPQSIVVHLPSEC*TQSECL
Trigger: GAGACACTCAGACTGTGTCAAGCACTCAGAAGGAAG...ATGGACCACAATACTCTGTGGTATGTGAATTGTGATCAACATAGAAGGTGACCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000152674.2
3UTR-3UTR CAA 90 bp CTTCCTCATAATTATAGCCAGAAAGCGGTAGGCTTCAAACAAAGCAAAACAAACGATCAATTCACAGCTTaGGGCCTGATGGCCTGCAGG +
Preference number: 3 (lower is better)
Translates to: LPHNYSQKAVGFKQSKTNDQFTA*GLMACR
Trigger: CCTGCAGGCCATCAGGCCCAAAGCTGTGAATTGATC...GTTTGTTTTGCTTTGTTTGAAGCCTACCGCTTTCTGGCTATAATTATGAGGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154906.8
3UTR GCA 72 bp GAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTaGAGGGTTTTTCAACATGAGTCGGAGAAGGATATC +
Preference number: 3 (lower is better)
Translates to: EEGSSFLCPCNS*RVFQHESEKDI
Trigger: GATATCCTTCTCCGACTCATGTTGAAAAACCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000105601.9
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
3UTR GCA 72 bp AACAGTCTGGAAAGTGGTTTCTGGAATCGTGATCAGTaGTTTGATGATGACATAGATGTGGATGGGGGTCCA +
Preference number: 3 (lower is better)
Translates to: NSLESGFWNRDQ*FDDDIDVDGGP
Trigger: TGGACCCCCATCCACATCTATGTCATCATCAAAGCACTGATCACGATTCCAGAAACCACTTTCCAGACTGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
3UTR CCA 72 bp CTACTCATTCCATTACTGAAGTGTGAGGCTTGTCTGTaGGAGACAAACATTTCTCTAGTCCCAGGCACTAGA +
Preference number: 3 (lower is better)
Translates to: LLIPLLKCEACL*ETNISLVPGTR
Trigger: TCTAGTGCCTGGGACTAGAGAAATGTTTGTCTCCCACAGACAAGCCTCACACTTCAGTAATGGAATGAGTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105604.8
3UTR-3UTR CAA 90 bp CGATTTAATCTACTCATTCCATTACTGAAGTGTGAGGCTTGTCTGTGGGAGACAACTCCTCCCACCATCTaGCTCACCGATTTAATCTAC +
Preference number: 3 (lower is better)
Translates to: RFNLLIPLLKCEACLWETTPPTI*LTDLIY
Trigger: GTAGATTAAATCGGTGAGCAAGATGGTGGGAGGAGT...TGTCTCCCACAGACAAGCCTCACACTTCAGTAATGGAATGAGTAGATTAAATCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105604.8
3UTR TCA 72 bp ACATGTATTGCATTAGGCACACTTCCCATTTGGGTATaGGCATTCACGTCTTCTGAGGCAGATTCATCTAGG +
Preference number: 3 (lower is better)
Translates to: TCIALGTLPIWV*AFTSSEADSSR
Trigger: CCTAGATGAATCTGCCTCAGAAGACGTGAATGCTCATACCCAAATGGGAAGTGTGCCTAATGCAATACATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
3UTR GCA 72 bp AGCCACATTGCCATGTTTAACAGGCTGTCTCTACATTaGCAAGTCATTCGTATGAAAACACGCAATACGGCA +
Preference number: 3 (lower is better)
Translates to: SHIAMFNRLSLH*QVIRMKTRNTA
Trigger: TGCCGTATTGCGTGTTTTCATACGAATGACTTGGCAATGTAGAGACAGCCTGTTAAACATGGCAATGTGGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR CCA 72 bp CTGAGGTCAGTTAGACAGATTGAATGTAGGCTATGCTaGCTAGTCACAGTTGAGGATAAACAGAACAGTGAG +
Preference number: 3 (lower is better)
Translates to: LRSVRQIECRLC*LVTVEDKQNSE
Trigger: CTCACTGTTCTGTTTATCCTCAACTGTGACTAGCCAGCATAGCCTACATTCAATCTGTCTAACTGACCTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
3UTR CCA 72 bp GCAGAAGTGCCAGGAAACAGTCTGGAAAGTGGTTTCTaGAATCGTGATCAGTGCTTTGATGATGACATAGAT +
Preference number: 3 (lower is better)
Translates to: AEVPGNSLESGF*NRDQCFDDDID
Trigger: ATCTATGTCATCATCAAAGCACTGATCACGATTCCAGAAACCACTTTCCAGACTGTTTCCTGGCACTTCTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
3UTR TCA 72 bp CTAGGGCAAACTTGTAGGTCAATGATCTTCTGGTCATaGAGAGATGCCATTCAACAACCATTGGCATGGAAT +
Preference number: 3 (lower is better)
Translates to: LGQTCRSMIFWS*RDAIQQPLAWN
Trigger: ATTCCATGCCAATGGTTGTTGAATGGCATCTCTTCATGACCAGAAGATCATTGACCTACAAGTTTGCCCTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105605.8
3UTR-3UTR CAA 90 bp CCAGGAAACAGTCTGGAAAGTGGTTTCTGGAATCGTGATCAGTGCTTTGATGATTGTTGTAGTAGTCTATaGAGATCACGATCTTGCAGA +
Preference number: 3 (lower is better)
Translates to: PGNSLESGFWNRDQCFDDCCSSL*RSRSCR
Trigger: TCTGCAAGATCGTGATCTCAATAGACTACTACAACA...ATCATCAAAGCACTGATCACGATTCCAGAAACCACTTTCCAGACTGTTTCCTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
3UTR-3UTR CAA 90 bp TCTCTACATTGCCAAGTCATTCGTATGAAAACACGCAATACGGCAAACCAGACAATCCCCAAGTTATCTTaGGTCATGGTGTTCATTGCA +
Preference number: 3 (lower is better)
Translates to: SLHCQVIRMKTRNTANQTIPKLS*VMVFIA
Trigger: TGCAATGAACACCATGACCAAAGATAACTTGGGGAT...TGTCTGGTTTGCCGTATTGCGTGTTTTCATACGAATGACTTGGCAATGTAGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000129221.8
3UTR-3UTR CAA 90 bp GAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGGGTTTTTCAACATGAGAGCAATGTTTCTTTTTaGATCTCTGCTCCAGTTTCT +
Preference number: 3 (lower is better)
Translates to: EGSSFLCPCNSCRVFQHESNVSF*ISAPVS
Trigger: AGAAACTGGAGCAGAGATCAAAAAAGAAACATTGCT...CTCATGTTGAAAAACCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR CCA 72 bp TTCTCACCAAGCTCAGGTAAAGCTGCTCTCAAGAGATaGAGAGGCACTAAGTACATAATCCATGTTTTTCTT +
Preference number: 3 (lower is better)
Translates to: FSPSSGKAALKR*RGTKYIIHVFL
Trigger: AAGAAAAACATGGATTATGTACTTAGTGCCTCTCCATCTCTTGAGAGCAGCTTTACCTGAGCTTGGTGAGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105611.8
3UTR CCA 72 bp AAATTAGTCCAAATATTTTCATGCAGATACTCCCAATaGCAAGTTGTGAGGGACTGCCATCACAACTGTAGC +
Preference number: 3 (lower is better)
Translates to: KLVQIFSCRYSQ*QVVRDCHHNCS
Trigger: GCTACAGTTGTGATGGCAGTCCCTCACAACTTGCCATTGGGAGTATCTGCATGAAAATATTTGGACTAATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105611.8
3UTR-3UTR CAA 90 bp ATTTTGTGTGTCTGTGGATGTATTCAGGACACATTTGAATGCATGGGAGTGAGAGGTAACAAAATATCTTaGGTGTGCTTCTCCCAGTTC +
Preference number: 3 (lower is better)
Translates to: ILCVCGCIQDTFECMGVRGNKIS*VCFSQF
Trigger: GAACTGGGAGAAGCACACCAAAGATATTTTGTTACC...TCTCACTCCCATGCATTCAAATGTGTCCTGAATACATCCACAGACACACAAAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154906.8
3UTR TCA 72 bp TTAACAGGCTGTCTCTACATTGCCAAGTCATTCGTATaGAAACACGCAATACGGCAAACCAGACAATACATT +
Preference number: 3 (lower is better)
Translates to: LTGCLYIAKSFV*KHAIRQTRQYI
Trigger: AATGTATTGTCTGGTTTGCCGTATTGCGTGTTTTCATACGAATGACTTGGCAATGTAGAGACAGCCTGTTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
3UTR TCA 72 bp CATCTAAAATATGTCACACCCCCTGACATTGTCTATTaGGCATTGCTAACCATAATAGTGTTCTACAAGAAC +
Preference number: 3 (lower is better)
Translates to: HLKYVTPPDIVY*ALLTIIVFYKN
Trigger: GTTCTTGTAGAACACTATTATGGTTAGCAATGCTCAATAGACAATGTCAGGGGGTGTGACATATTTTAGATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000154906.8
3UTR-3UTR CAA 90 bp TGCCCAAGATTTGAAGCTCAGTTTAGGGTAGATAGCTTCAAATTTCATTATCTAGCAGATTCATCTAGGTaGTATTACATAAATCTGAGG +
Preference number: 3 (lower is better)
Translates to: CPRFEAQFRVDSFKFHYLADSSR*YYINLR
Trigger: CCTCAGATTTATGTAATACAACCTAGATGAATCTGC...TAGATAATGAAATTTGAAGCTATCTACCCTAAACTGAGCTTCAAATCTTGGGCA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
3UTR TCA 72 bp TATTTTGTGTGTCTGTGGATGTATTCAGGACACATTTaGATGCATGGGAGTGAGAGATTAACAATCAGTTTT +
Preference number: 3 (lower is better)
Translates to: YFVCLWMYSGHI*MHGSERLTISF
Trigger: AAAACTGATTGTTAATCTCTCACTCCCATGCATTCAAATGTGTCCTGAATACATCCACAGACACACAAAATA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154906.8
CDS-3UTR TCA 90 bp GGCCAAGGCCTCCCTCTGGCTGCTCCTCTGCAGGACTTGGTAGTGAATCCTTTTGAAGGGCTGCCGGTCTaGGGGCACAGGCTGTGGCTC +
Preference number: 4 (lower is better)
Translates to: GQGLPLAAPLQDLVVNPFEGLPV*GHRLWL
Trigger: GAGCCACAGCCTGTGCCCTCAGACCGGCAGCCCTTC...AAAAGGATTCACTACCAAGTCCTGCAGAGGAGCAGCCAGAGGGAGGCCTTGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
3UTR CAA 72 bp AGCCCCGTGCGGTTAGGACCGCATGGGTCGGACTGGTaGCCATCAACGTGGGACAAGTTGAGCCAGGAGCCA +
Preference number: 4 (lower is better)
Translates to: SPVRLGPHGSDW*PSTWDKLSQEP
Trigger: TGGCTCCTGGCTCAACTTGTCCCACGTTGATGGCAACCAGTCCGACCCATGCGGTCCTAACCGCACGGGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
CDS-3UTR TCA 90 bp CAGGCTCAAAGACAAGGGACAGGTCACACTGGATGCTGTACACACCCTCTCTGGGAAGGGCTGCCGGTCTaGGGGCACAGGCTGTGGCTC +
Preference number: 4 (lower is better)
Translates to: QAQRQGTGHTGCCTHPLWEGLPV*GHRLWL
Trigger: GAGCCACAGCCTGTGCCCTCAGACCGGCAGCCCTTC...CCAGAGAGGGTGTGTACAGCATCCAGTGTGACCTGTCCCTTGTCTTTGAGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000129954.8
ENSMUST00000144264.8
CDS-3UTR TCA 90 bp CTTCTAGCAGAGCCTGCACCTCCACACTGCTCACCAGCTCATCCCTGTGTTCAGCCAGCACCATCCGGGTaGTCCTGCGCAGGTTCCTGT +
Preference number: 4 (lower is better)
Translates to: LLAEPAPPHCSPAHPCVQPAPSG*SCAGSC
Trigger: ACAGGAACCTGCGCAGGATCACCCGGATGGTGCTGG...CTGAACACAGGGATGAGCTGGTGAGCAGTGTGGAGGTGCAGGCTCTGCTAGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR TCA 90 bp CCTGTCTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACGGTCAGAGCAGTCGCTaGTGTTCCCTGGGCCGGCGC +
Preference number: 4 (lower is better)
Translates to: PVLGHHQEEGSSFLCPCNGQSSR*CSLGRR
Trigger: GCGCCGGCCCAGGGAACATCAGCGACTGCTCTGACC...GTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGACAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105601.9
ENSMUST00000129954.8
ENSMUST00000144264.8
CDS-3UTR TCA 90 bp GCGGTGTCCACAGAAGCCACATTGCCATGTTTAACAGGCTGTCTCTACATTGCCGAAGGGCTGCCGGTCTaGGGGCACAGGCTGTGGCTC +
Preference number: 4 (lower is better)
Translates to: AVSTEATLPCLTGCLYIAEGLPV*GHRLWL
Trigger: GAGCCACAGCCTGTGCCCTCAGACCGGCAGCCCTTC...GGCAATGTAGAGACAGCCTGTTAAACATGGCAATGTGGCTTCTGTGGACACCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105611.8
ENSMUST00000144264.8
CDS-3UTR TCA 90 bp TCCTGTAAAGATCTGGGCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGGATACCCAGCACCATCCGGGTaGTCCTGCGCAGGTTCCTGT +
Preference number: 4 (lower is better)
Translates to: SCKDLGHADCQGWLQRGYPAPSG*SCAGSC
Trigger: ACAGGAACCTGCGCAGGATCACCCGGATGGTGCTGG...GTATCCTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGCCCAGATCTTTACAGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR TCA 90 bp CCTGTAAAGATCTGGGCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGGATACACCAGCACCATCCGGGTaGTCCTGCGCAGGTTCCTGT +
Preference number: 4 (lower is better)
Translates to: PVKIWATLTARVGFREDTPAPSG*SCAGSC
Trigger: ACAGGAACCTGCGCAGGATCACCCGGATGGTGCTGG...TGTATCCTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGCCCAGATCTTTACAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR TCA 90 bp CTGACTGCCAGGGTTGGCTGGTGGTTAGTTCGATCCACTGTATTAGCCGTGGAGCAACGTGGGACAAGTTaGGCCAGGAGCCAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: LTARVGWWLVRSTVLAVEQRGTS*ARSQVL
Trigger: CAGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTG...CTCCACGGCTAATACAGTGGATCGAACTAACCACCAGCCAACCCTGGCAGTCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
CDS-3UTR TCA 90 bp GAGAGCGGTGTCCACAGAAGCCACATTGCCATGTTTAACAGGCTGTCTCTACATGAAGGGCTGCCGGTCTaGGGGCACAGGCTGTGGCTC +
Preference number: 4 (lower is better)
Translates to: ESGVHRSHIAMFNRLSLHEGLPV*GHRLWL
Trigger: GAGCCACAGCCTGTGCCCTCAGACCGGCAGCCCTTC...ATGTAGAGACAGCCTGTTAAACATGGCAATGTGGCTTCTGTGGACACCGCTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105611.8
ENSMUST00000144264.8
CDS-3UTR TCA 90 bp AGAGCTTGGGGCTCTGCTTCCATTAGAGGAAGGTCAGGTGGGTCAGGAAGGATACCAGCACCATCCGGGTaGTCCTGCGCAGGTTCCTGT +
Preference number: 4 (lower is better)
Translates to: RAWGSASIRGRSGGSGRIPAPSG*SCAGSC
Trigger: ACAGGAACCTGCGCAGGATCACCCGGATGGTGCTGG...TATCCTTCCTGACCCACCTGACCTTCCTCTAATGGAAGCAGAGCCCCAAGCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
CDS-3UTR GCA 90 bp GTCTTAGAGGAAGCAACCAAGCAGCCACGCCCCTGTGAGCCTGGGAGGGAGATCATGGGTCGGACTGGTTaGCATCAACGTGGGACAAGT +
Preference number: 4 (lower is better)
Translates to: VLEEATKQPRPCEPGREIMGRTG*HQRGTS
Trigger: ACTTGTCCCACGTTGATGGCAACCAGTCCGACCCAT...GATCTCCCTCCCAGGCTCACAGGGGCGTGGCTGCTTGGTTGCTTCCTCTAAGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
CDS-3UTR CCA 90 bp CTGACTGCCAGGGTTGGCTGGTGGTTAGTTCGATCCACTGTATTAGCCGTGGAGCCGCATGGGTCGGACTaGTTGCCATCAACGTGGGAC +
Preference number: 4 (lower is better)
Translates to: LTARVGWWLVRSTVLAVEPHGSD*LPSTWD
Trigger: GTCCCACGTTGATGGCAACCAGTCCGACCCATGCGG...CTCCACGGCTAATACAGTGGATCGAACTAACCACCAGCCAACCCTGGCAGTCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
CDS-3UTR TCA 90 bp TATCCTGTAAAGATCTGGGCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGGATCAACGTGGGACAAGTTaGGCCAGGAGCCAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: YPVKIWATLTARVGFREDQRGTS*ARSQVL
Trigger: CAGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTG...ATCCTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGCCCAGATCTTTACAGGATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129954.8
ENSMUST00000144264.8
CDS-3UTR TCA 90 bp ATCAGATGCTTTTCCAGGAAACCAGCGCCTCCCACAAACCCTGACAGCAACCTGCAACGTGGGACAAGTTaGGCCAGGAGCCAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: IRCFSRKPAPPTNPDSNLQRGTS*ARSQVL
Trigger: CAGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTG...CAGGTTGCTGTCAGGGTTTGTGGGAGGCGCTGGTTTCCTGGAAAAGCATCTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000152674.2
CDS-3UTR TCA 90 bp GCTTTGGGCCTGATGGCCTGCAGGGGACTTGTCAAGCCTGATAGTACGAGGTGCTGGGATGAGAGAACGTaGGGGTGCAATCTATGGACC +
Preference number: 4 (lower is better)
Translates to: ALGLMACRGLVKPDSTRCWDERT*GCNLWT
Trigger: GGTCCATAGATTGCACCCTCACGTTCTCTCATCCCA...GCACCTCGTACTATCAGGCTTGACAAGTCCCCTGCAGGCCATCAGGCCCAAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154906.8
CDS-3UTR TCA 90 bp GGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGCCAGCACCATCCGGGTaGTCCTGCGCAGGTTCCTGT +
Preference number: 4 (lower is better)
Translates to: GPSSGRRFLIPLSMQLLQPAPSG*SCAGSC
Trigger: ACAGGAACCTGCGCAGGATCACCCGGATGGTGCTGG...CTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105601.9
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR GCA 90 bp CCTGTCTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACGAGCCAGGAGCCAGGTaGTGGGGAGCAACTTGCAGG +
Preference number: 4 (lower is better)
Translates to: PVLGHHQEEGSSFLCPCNEPGAR*WGATCR
Trigger: CCTGCAAGTTGCTCCCCAGCACCTGGCTCCTGGCTC...GTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGACAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105601.9
ENSMUST00000129954.8
ENSMUST00000144264.8
CDS-3UTR CCA 90 bp ACAGGGATGTGCTGGAATAGAGAGCTTGGGGCTCTGCTTCCATTAGAGGAAGGTCCAGGAGCCAGGTGCTaGGGAGCAACTTGCAGGAGC +
Preference number: 4 (lower is better)
Translates to: TGMCWNRELGALLPLEEGPGARC*GATCRS
Trigger: GCTCCTGCAAGTTGCTCCCCAGCACCTGGCTCCTGG...ACCTTCCTCTAATGGAAGCAGAGCCCCAAGCTCTCTATTCCAGCACATCCCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078634.12
ENSMUST00000105603.2
CDS-3UTR TCA 90 bp CACTGTATTAGCCGTGGAGGGGTGTTCCCTAGTGTTTTGACGGATTCGAGCAGACAACGTGGGACAAGTTaGGCCAGGAGCCAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: HCISRGGVFPSVLTDSSRQRGTS*ARSQVL
Trigger: CAGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTG...TCTGCTCGAATCCGTCAAAACACTAGGGAACACCCCTCCACGGCTAATACAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
CDS-3UTR TCA 90 bp TTATGTGTCTCGATGTGGATAACAACGAGTGGGGCATGGGGAGGAAGCAGCAGACAACGTGGGACAAGTTaGGCCAGGAGCCAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: LCVSMWITTSGAWGGSSRQRGTS*ARSQVL
Trigger: CAGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTG...TCTGCTGCTTCCTCCCCATGCCCCACTCGTTGTTATCCACATCGAGACACATAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
CDS-3UTR TCA 90 bp AGTAGTGGCCTGCAGTCTCTTCCTTCTGAGTGCTTGACACAGTCTGAGTGTCTCCAACGTGGGACAAGTTaGGCCAGGAGCCAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: SSGLQSLPSECLTQSECLQRGTS*ARSQVL
Trigger: CAGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTG...GAGACACTCAGACTGTGTCAAGCACTCAGAAGGAAGAGACTGCAGGCCACTACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000152674.2
CDS-3UTR TCA 90 bp GTGACTGGGCTAGAGGTCAGAGGTAGCTTTTCCTTTATGCATCACTACAGTGAAGAAGGGCTGCCGGTCTaGGGGCACAGGCTGTGGCTC +
Preference number: 4 (lower is better)
Translates to: VTGLEVRGSFSFMHHYSEEGLPV*GHRLWL
Trigger: GAGCCACAGCCTGTGCCCTCAGACCGGCAGCCCTTC...TTCACTGTAGTGATGCATAAAGGAAAAGCTACCTCTGACCTCTAGCCCAGTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000152674.2
CDS-3UTR TCA 90 bp CTAGCAGAGCCTGCACCTCCACACTGCTCACCAGCTCATCCCTGTGTTCAGATGTGGGATGAGAGAACGTaGGGGTGCAATCTATGGACC +
Preference number: 4 (lower is better)
Translates to: LAEPAPPHCSPAHPCVQMWDERT*GCNLWT
Trigger: GGTCCATAGATTGCACCCTCACGTTCTCTCATCCCA...CATCTGAACACAGGGATGAGCTGGTGAGCAGTGTGGAGGTGCAGGCTCTGCTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR TCA 90 bp GCCCCCAGGCTCAAAGACAAGGGACAGGTCACACTGGATGCTGTACACACCCTCGCATGCGGACACTCTTaGGTCGTAAGATCATCAGTC +
Preference number: 4 (lower is better)
Translates to: APRLKDKGQVTLDAVHTLACGHS*VVRSSV
Trigger: GACTGATGATCTTACGACTCAAGAGTGTCCGCATGC...GAGGGTGTGTACAGCATCCAGTGTGACCTGTCCCTTGTCTTTGAGCCTGGGGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
CDS-3UTR TCA 90 bp AGGAAATGGTATGCTGTGAAAGAAGATGGCCCCCAGGCTCAAAGACAAGGGACACCAGCACCATCCGGGTaGTCCTGCGCAGGTTCCTGT +
Preference number: 4 (lower is better)
Translates to: RKWYAVKEDGPQAQRQGTPAPSG*SCAGSC
Trigger: ACAGGAACCTGCGCAGGATCACCCGGATGGTGCTGG...TGTCCCTTGTCTTTGAGCCTGGGGGCCATCTTCTTTCACAGCATACCATTTCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR GCA 90 bp CTTCTAGCAGAGCCTGCACCTCCACACTGCTCACCAGCTCATCCCTGTGTTCAGATGGGTCGGACTGGTTaGCATCAACGTGGGACAAGT +
Preference number: 4 (lower is better)
Translates to: LLAEPAPPHCSPAHPCVQMGRTG*HQRGTS
Trigger: ACTTGTCCCACGTTGATGGCAACCAGTCCGACCCAT...CTGAACACAGGGATGAGCTGGTGAGCAGTGTGGAGGTGCAGGCTCTGCTAGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105611.8
ENSMUST00000144264.8
CDS-3UTR CCA 90 bp CATCTTCCCTCTCGCTGTCTTCTAGCAGAGCCTGCACCTCCACACTGCTCACCATGGTTGCCATCAACGTaGGACAAGTTGAGCCAGGAG +
Preference number: 4 (lower is better)
Translates to: HLPSRCLLAEPAPPHCSPWLPST*DKLSQE
Trigger: CTCCTGGCTCAACTTGTCCCACGTTGATGGCAACCA...TGGTGAGCAGTGTGGAGGTGCAGGCTCTGCTAGAAGACAGCGAGAGGGAAGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105611.8
ENSMUST00000144264.8
CDS-3UTR CCA 90 bp CTTCCCTCTCGCTGTCTTCTAGCAGAGCCTGCACCTCCACACTGCTCACCAGCTTTACGGGCAGACCAATaGCAGAAGAGAGGATCCAGT +
Preference number: 4 (lower is better)
Translates to: LPSRCLLAEPAPPHCSPALRADQ*QKRGSS
Trigger: ACTGGATCCTCTCTTCTGCCATTGGTCTGCCCGTAA...AGCTGGTGAGCAGTGTGGAGGTGCAGGCTCTGCTAGAAGACAGCGAGAGGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CCA 90 bp GCCCCCAGGCTCAAAGACAAGGGACAGGTCACACTGGATGCTGTACACACCCTCTTACGGGCAGACCAATaGCAGAAGAGAGGATCCAGT +
Preference number: 4 (lower is better)
Translates to: APRLKDKGQVTLDAVHTLLRADQ*QKRGSS
Trigger: ACTGGATCCTCTCTTCTGCCATTGGTCTGCCCGTAA...GAGGGTGTGTACAGCATCCAGTGTGACCTGTCCCTTGTCTTTGAGCCTGGGGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
CDS-3UTR TCA 90 bp GAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGGGTTTTTCAACATGAAGGGCTGCCGGTCTaGGGGCACAGGCTGTGGCTC +
Preference number: 4 (lower is better)
Translates to: EEGSSFLCPCNSCRVFQHEGLPV*GHRLWL
Trigger: GAGCCACAGCCTGTGCCCTCAGACCGGCAGCCCTTC...ATGTTGAAAAACCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105601.9
ENSMUST00000129954.8
ENSMUST00000144264.8
CDS-3UTR TCA 90 bp GCAGAGTTTTGCTGTTCGATTGTGGAGGAAGTTGGGATGCAGAACTCTCTAAAAGAAGGGCTGCCGGTCTaGGGGCACAGGCTGTGGCTC +
Preference number: 4 (lower is better)
Translates to: AEFCCSIVEEVGMQNSLKEGLPV*GHRLWL
Trigger: GAGCCACAGCCTGTGCCCTCAGACCGGCAGCCCTTC...TTTTAGAGAGTTCTGCATCCCAACTTCCTCCACAATCGAACAGCAAAACTCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
CDS-3UTR TCA 90 bp GGATATCCTGTAAAGATCTGGGCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGTGGGATGAGAGAACGTaGGGGTGCAATCTATGGACC +
Preference number: 4 (lower is better)
Translates to: GYPVKIWATLTARVGFREWDERT*GCNLWT
Trigger: GGTCCATAGATTGCACCCTCACGTTCTCTCATCCCA...CTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGCCCAGATCTTTACAGGATATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR TCA 90 bp GCAGGGTTTTTCAACATGAGTCGGAGAAGGATATCCTGTAAAGATCTGGGCCACCCAGCACCATCCGGGTaGTCCTGCGCAGGTTCCTGT +
Preference number: 4 (lower is better)
Translates to: AGFFNMSRRRISCKDLGHPAPSG*SCAGSC
Trigger: ACAGGAACCTGCGCAGGATCACCCGGATGGTGCTGG...GTGGCCCAGATCTTTACAGGATATCCTTCTCCGACTCATGTTGAAAAACCCTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR GCA 90 bp AGAAGGATATCCTGTAAAGATCTGGGCCACGCTGACTGCCAGGGTTGGCTGGTGATGGGTCGGACTGGTTaGCATCAACGTGGGACAAGT +
Preference number: 4 (lower is better)
Translates to: RRISCKDLGHADCQGWLVMGRTG*HQRGTS
Trigger: ACTTGTCCCACGTTGATGGCAACCAGTCCGACCCAT...CACCAGCCAACCCTGGCAGTCAGCGTGGCCCAGATCTTTACAGGATATCCTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
CDS-3UTR GCA 90 bp CGCTGTCTTCTAGCAGAGCCTGCACCTCCACACTGCTCACCAGCTCATCCCTGTCAATCTATGGACCCCTaGCTGTATTTTGTGGTTGCC +
Preference number: 4 (lower is better)
Translates to: RCLLAEPAPPHCSPAHPCQSMDP*LYFVVA
Trigger: GGCAACCACAAAATACAGGCAGGGGTCCATAGATTG...ACAGGGATGAGCTGGTGAGCAGTGTGGAGGTGCAGGCTCTGCTAGAAGACAGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CCA 90 bp GGGTTTTTCAACATGAGTCGGAGAAGGATATCCTGTAAAGATCTGGGCCACGCTCCAGGAGCCAGGTGCTaGGGAGCAACTTGCAGGAGC +
Preference number: 4 (lower is better)
Translates to: GFFNMSRRRISCKDLGHAPGARC*GATCRS
Trigger: GCTCCTGCAAGTTGCTCCCCAGCACCTGGCTCCTGG...AGCGTGGCCCAGATCTTTACAGGATATCCTTCTCCGACTCATGTTGAAAAACCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
ENSMUST00000129954.8
ENSMUST00000144264.8
CDS-3UTR CCA 90 bp CGGAGAAGGATATCCTGTAAAGATCTGGGCCACGCTGACTGCCAGGGTTGGCTTTGGTTGCCATCAACGTaGGACAAGTTGAGCCAGGAG +
Preference number: 4 (lower is better)
Translates to: RRRISCKDLGHADCQGWLWLPST*DKLSQE
Trigger: CTCCTGGCTCAACTTGTCCCACGTTGATGGCAACCA...AAGCCAACCCTGGCAGTCAGCGTGGCCCAGATCTTTACAGGATATCCTTCTCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000129954.8
ENSMUST00000144264.8
CDS-3UTR CCA 90 bp GGATTCCTGTCTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATCCGCATGGGTCGGACTaGTTGCCATCAACGTGGGAC +
Preference number: 4 (lower is better)
Translates to: GFLSWAIIRKKVPHSSVHPHGSD*LPSTWD
Trigger: GTCCCACGTTGATGGCAACCAGTCCGACCCATGCGG...ATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGACAGGAATCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105601.9
ENSMUST00000129954.8
ENSMUST00000144264.8
CDS-3UTR CCA 90 bp TTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCCCGCATGGGTCGGACTaGTTGCCATCAACGTGGGAC +
Preference number: 4 (lower is better)
Translates to: LGHHQEEGSSFLCPCNSCPHGSD*LPSTWD
Trigger: GTCCCACGTTGATGGCAACCAGTCCGACCCATGCGG...GCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105601.9
ENSMUST00000129954.8
ENSMUST00000144264.8
CDS-3UTR CCA 90 bp CTAGCAGAGCCTGCACCTCCACACTGCTCACCAGCTCATCCCTGTGTTCAGATGTTACGGGCAGACCAATaGCAGAAGAGAGGATCCAGT +
Preference number: 4 (lower is better)
Translates to: LAEPAPPHCSPAHPCVQMLRADQ*QKRGSS
Trigger: ACTGGATCCTCTCTTCTGCCATTGGTCTGCCCGTAA...CATCTGAACACAGGGATGAGCTGGTGAGCAGTGTGGAGGTGCAGGCTCTGCTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CCA 90 bp TGTAAAGATCTGGGCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGGATACAAGAGAGAGATGGCTCAGTaGTTCAGCGCACTTGCTGCC +
Preference number: 4 (lower is better)
Translates to: CKDLGHADCQGWLQRGYKREMAQ*FSALAA
Trigger: GGCAGCAAGTGCGCTGAACCACTGAGCCATCTCTCT...CTTGTATCCTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGCCCAGATCTTTACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129954.8
CDS-3UTR TCA 90 bp GTTAGAGAATCTGAAGGGCAGCTATGTTTAAAACAGGGATGTGCTGGAATAGAGGGTCAGAGCAGTCGCTaGTGTTCCCTGGGCCGGCGC +
Preference number: 4 (lower is better)
Translates to: VRESEGQLCLKQGCAGIEGQSSR*CSLGRR
Trigger: GCGCCGGCCCAGGGAACATCAGCGACTGCTCTGACC...CTCTATTCCAGCACATCCCTGTTTTAAACATAGCTGCCCTTCAGATTCTCTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
CDS-3UTR TCA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCGGTCAGAGCAGTCGCTaGTGTTCCCTGGGCCGGCGC +
Preference number: 4 (lower is better)
Translates to: GRHENILTPPTILLTDLIGQSSR*CSLGRR
Trigger: GCGCCGGCCCAGGGAACATCAGCGACTGCTCTGACC...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR TCA 90 bp GGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGGGTTTTTCAACATGAGTCGCAACGTGGGACAAGTTaGGCCAGGAGCCAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: GSSFLCPCNSCRVFQHESQRGTS*ARSQVL
Trigger: CAGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTG...CGACTCATGTTGAAAAACCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105601.9
ENSMUST00000129954.8
ENSMUST00000144264.8
CDS-3UTR TCA 90 bp AGCGTTAGAGAATCTGAAGGGCAGCTATGTTTAAAACAGGGATGTGCTGGAATAGAAGGGCTGCCGGTCTaGGGGCACAGGCTGTGGCTC +
Preference number: 4 (lower is better)
Translates to: SVRESEGQLCLKQGCAGIEGLPV*GHRLWL
Trigger: GAGCCACAGCCTGTGCCCTCAGACCGGCAGCCCTTC...TATTCCAGCACATCCCTGTTTTAAACATAGCTGCCCTTCAGATTCTCTAACGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
CDS-3UTR TCA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCGAAGGGCTGCCGGTCTaGGGGCACAGGCTGTGGCTC +
Preference number: 4 (lower is better)
Translates to: GRHENILTPPTILLTDLIEGLPV*GHRLWL
Trigger: GAGCCACAGCCTGTGCCCTCAGACCGGCAGCCCTTC...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR TCA 90 bp TCCCACCATCTTGCTCACCGATTTAATCTACTCATTCCATTACTGAAGTGTGAGGAAGGGCTGCCGGTCTaGGGGCACAGGCTGTGGCTC +
Preference number: 4 (lower is better)
Translates to: SHHLAHRFNLLIPLLKCEEGLPV*GHRLWL
Trigger: GAGCCACAGCCTGTGCCCTCAGACCGGCAGCCCTTC...CTCACACTTCAGTAATGGAATGAGTAGATTAAATCGGTGAGCAAGATGGTGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105604.8
CDS-3UTR TCA 90 bp AGGGTCACCTTCTATGTTGATCACAATTCACATACCACAGAGTATTGTGGTCCAGAAGGGCTGCCGGTCTaGGGGCACAGGCTGTGGCTC +
Preference number: 4 (lower is better)
Translates to: RVTFYVDHNSHTTEYCGPEGLPV*GHRLWL
Trigger: GAGCCACAGCCTGTGCCCTCAGACCGGCAGCCCTTC...TGGACCACAATACTCTGTGGTATGTGAATTGTGATCAACATAGAAGGTGACCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000152674.2
CDS-3UTR TCA 90 bp GGCCAAGGCCTCCCTCTGGCTGCTCCTCTGCAGGACTTGGTAGTGAATCCTTTTCTGCCAGAGCAAGGTTaGAAATGTAGATGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: GQGLPLAAPLQDLVVNPFLPEQG*KCRCWW
Trigger: CCACCAACATCTACATTTTCAACCTTGCTCTGGCAG...AAAAGGATTCACTACCAAGTCCTGCAGAGGAGCAGCCAGAGGGAGGCCTTGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
CDS-3UTR TCA 90 bp AGCAGAGCCTGCACCTCCACACTGCTCACCAGCTCATCCCTGTGTTCAGATGACCTGCCAGAGCAAGGTTaGAAATGTAGATGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: SRACTSTLLTSSSLCSDDLPEQG*KCRCWW
Trigger: CCACCAACATCTACATTTTCAACCTTGCTCTGGCAG...GTCATCTGAACACAGGGATGAGCTGGTGAGCAGTGTGGAGGTGCAGGCTCTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR TCA 90 bp CCCCGGATTCCTGTCTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTTGGGATGAGAGAACGTaGGGGTGCAATCTATGGACC +
Preference number: 4 (lower is better)
Translates to: PRIPVLGHHQEEGSSFLCWDERT*GCNLWT
Trigger: GGTCCATAGATTGCACCCTCACGTTCTCTCATCCCA...ACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGACAGGAATCCGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105601.9
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR TCA 90 bp AAAGACAAGGGACAGGTCACACTGGATGCTGTACACACCCTCTCTGGGAGTCCATGGGATGAGAGAACGTaGGGGTGCAATCTATGGACC +
Preference number: 4 (lower is better)
Translates to: KDKGQVTLDAVHTLSGSPWDERT*GCNLWT
Trigger: GGTCCATAGATTGCACCCTCACGTTCTCTCATCCCA...TGGACTCCCAGAGAGGGTGTGTACAGCATCCAGTGTGACCTGTCCCTTGTCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
CDS-3UTR TCA 90 bp CCTGTAAAGATCTGGGCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGGATACAGCATGCGGACACTCTTaGGTCGTAAGATCATCAGTC +
Preference number: 4 (lower is better)
Translates to: PVKIWATLTARVGFREDTACGHS*VVRSSV
Trigger: GACTGATGATCTTACGACTCAAGAGTGTCCGCATGC...TGTATCCTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGCCCAGATCTTTACAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR TCA 90 bp GTCCATGCAACTCTTGCAGGGTTTTTCAACATGAGTCGGAGAAGGATATCCTGTCCAGCACCATCCGGGTaGTCCTGCGCAGGTTCCTGT +
Preference number: 4 (lower is better)
Translates to: VHATLAGFFNMSRRRISCPAPSG*SCAGSC
Trigger: ACAGGAACCTGCGCAGGATCACCCGGATGGTGCTGG...ACAGGATATCCTTCTCCGACTCATGTTGAAAAACCCTGCAAGAGTTGCATGGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR TCA 90 bp GTTAGAGAATCTGAAGGGCAGCTATGTTTAAAACAGGGATGTGCTGGAATAGAGGCAGCCACGCCCCTGTaGGCCTGGGAGGGAGATCCA +
Preference number: 4 (lower is better)
Translates to: VRESEGQLCLKQGCAGIEAATPL*AWEGDP
Trigger: TGGATCTCCCTCCCAGGCTCACAGGGGCGTGGCTGC...CTCTATTCCAGCACATCCCTGTTTTAAACATAGCTGCCCTTCAGATTCTCTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
CDS-3UTR GCA 90 bp TTATCTTCCCTTCTACTCTCTGGCTGTGCAAGATCCACACTGACATGCAAACACGAGCCAGGAGCCAGGTaGTGGGGAGCAACTTGCAGG +
Preference number: 4 (lower is better)
Translates to: LSSLLLSGCARSTLTCKHEPGAR*WGATCR
Trigger: CCTGCAAGTTGCTCCCCAGCACCTGGCTCCTGGCTC...GTGTTTGCATGTCAGTGTGGATCTTGCACAGCCAGAGAGTAGAAGGGAAGATAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
CDS-3UTR GCA 90 bp TCGCTGTCTTCTAGCAGAGCCTGCACCTCCACACTGCTCACCAGCTCATCCCTGCCTGTATTTTGTGGTTaGCATGAACATTACGGGCAG +
Preference number: 4 (lower is better)
Translates to: SLSSSRACTSTLLTSSSLPVFCG*HEHYGQ
Trigger: CTGCCCGTAATGTTCATGGCAACCACAAAATACAGG...CAGGGATGAGCTGGTGAGCAGTGTGGAGGTGCAGGCTCTGCTAGAAGACAGCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CCA 90 bp AGGAAACCAGCGCCTCCCACAAACCCTGACAGCAACCTGATTCCAAGTAGATGGTGGTTGCCATCAACGTaGGACAAGTTGAGCCAGGAG +
Preference number: 4 (lower is better)
Translates to: RKPAPPTNPDSNLIPSRWWLPST*DKLSQE
Trigger: CTCCTGGCTCAACTTGTCCCACGTTGATGGCAACCA...CCATCTACTTGGAATCAGGTTGCTGTCAGGGTTTGTGGGAGGCGCTGGTTTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000152674.2
CDS-3UTR CCA 90 bp GCTATGTTTAAAACAGGGATGTGCTGGAATAGAGAGCTTGGGGCTCTGCTTCCACCGCATGGGTCGGACTaGTTGCCATCAACGTGGGAC +
Preference number: 4 (lower is better)
Translates to: AMFKTGMCWNRELGALLPPHGSD*LPSTWD
Trigger: GTCCCACGTTGATGGCAACCAGTCCGACCCATGCGG...TGGAAGCAGAGCCCCAAGCTCTCTATTCCAGCACATCCCTGTTTTAAACATAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
CDS-3UTR CCA 90 bp GAAGATGGCCCCCAGGCTCAAAGACAAGGGACAGGTCACACTGGATGCTGTACATTACGGGCAGACCAATaGCAGAAGAGAGGATCCAGT +
Preference number: 4 (lower is better)
Translates to: EDGPQAQRQGTGHTGCCTLRADQ*QKRGSS
Trigger: ACTGGATCCTCTCTTCTGCCATTGGTCTGCCCGTAA...TGTACAGCATCCAGTGTGACCTGTCCCTTGTCTTTGAGCCTGGGGGCCATCTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
CDS-3UTR CCA 90 bp GTAAAGATCTGGGCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGGATACAAGGTTACGGGCAGACCAATaGCAGAAGAGAGGATCCAGT +
Preference number: 4 (lower is better)
Translates to: VKIWATLTARVGFREDTRLRADQ*QKRGSS
Trigger: ACTGGATCCTCTCTTCTGCCATTGGTCTGCCCGTAA...CCTTGTATCCTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGCCCAGATCTTTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR CCA 90 bp CGCTGTCTTCTAGCAGAGCCTGCACCTCCACACTGCTCACCAGCTCATCCCTGTTGCCAGGAAACAGTCTaGAAAGTGGTTTCTGGAATC +
Preference number: 4 (lower is better)
Translates to: RCLLAEPAPPHCSPAHPCCQETV*KVVSGI
Trigger: GATTCCAGAAACCACTTTCCAGACTGTTTCCTGGCA...ACAGGGATGAGCTGGTGAGCAGTGTGGAGGTGCAGGCTCTGCTAGAAGACAGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CCA 90 bp GCCCCCAGGCTCAAAGACAAGGGACAGGTCACACTGGATGCTGTACACACCCTCTGCCAGGAAACAGTCTaGAAAGTGGTTTCTGGAATC +
Preference number: 4 (lower is better)
Translates to: APRLKDKGQVTLDAVHTLCQETV*KVVSGI
Trigger: GATTCCAGAAACCACTTTCCAGACTGTTTCCTGGCA...GAGGGTGTGTACAGCATCCAGTGTGACCTGTCCCTTGTCTTTGAGCCTGGGGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
CDS-3UTR CCA 90 bp GGCTCAAAGACAAGGGACAGGTCACACTGGATGCTGTACACACCCTCTCTGGGATCAGCATCTGCCTGGTaGCTCCCAACTGTCTTCAAT +
Preference number: 4 (lower is better)
Translates to: GSKTRDRSHWMLYTPSLGSASAW*LPTVFN
Trigger: ATTGAAGACAGTTGGGAGCCACCAGGCAGATGCTGA...TCCCAGAGAGGGTGTGTACAGCATCCAGTGTGACCTGTCCCTTGTCTTTGAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129954.8
CDS-3UTR TCA 90 bp ATCTGGGCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGGATACAAGGAAATGGCTGCCAGAGCAAGGTTaGAAATGTAGATGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: IWATLTARVGFREDTRKWLPEQG*KCRCWW
Trigger: CCACCAACATCTACATTTTCAACCTTGCTCTGGCAG...CCATTTCCTTGTATCCTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGCCCAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR TCA 90 bp GACAAGGGACAGGTCACACTGGATGCTGTACACACCCTCTCTGGGAGTCCAGCTTCCAGTTGCAGACATTaGCAATTTTGGCATTTCGGG +
Preference number: 4 (lower is better)
Translates to: DKGQVTLDAVHTLSGSPASSCRH*QFWHFG
Trigger: CCCGAAATGCCAAAATTGTCAATGTCTGCAACTGGA...AGCTGGACTCCCAGAGAGGGTGTGTACAGCATCCAGTGTGACCTGTCCCTTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
CDS-3UTR TCA 90 bp AACATGAGTCGGAGAAGGATATCCTGTAAAGATCTGGGCCACGCTGACTGCCAGTGGGATGAGAGAACGTaGGGGTGCAATCTATGGACC +
Preference number: 4 (lower is better)
Translates to: NMSRRRISCKDLGHADCQWDERT*GCNLWT
Trigger: GGTCCATAGATTGCACCCTCACGTTCTCTCATCCCA...CTGGCAGTCAGCGTGGCCCAGATCTTTACAGGATATCCTTCTCCGACTCATGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR TCA 90 bp GAATCTGAAGGGCAGCTATGTTTAAAACAGGGATGTGCTGGAATAGAGAGCTTGCCAGCACCATCCGGGTaGTCCTGCGCAGGTTCCTGT +
Preference number: 4 (lower is better)
Translates to: ESEGQLCLKQGCAGIESLPAPSG*SCAGSC
Trigger: ACAGGAACCTGCGCAGGATCACCCGGATGGTGCTGG...CAAGCTCTCTATTCCAGCACATCCCTGTTTTAAACATAGCTGCCCTTCAGATTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
CDS-3UTR TCA 90 bp TCCTGTCTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAATCTGATGCCTTCGTTTaGCCTCTGTTGGCTCCAGGC +
Preference number: 4 (lower is better)
Translates to: SCLGPSSGRRFLIPLSMQSDAFV*PLLAPG
Trigger: GCCTGGAGCCAACAGAGGTCAAACGAAGGCATCAGA...TTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGACAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129954.8
CDS-3UTR GCA 90 bp TGCCATTCAACAACCATTGGCATGGAATGTTCTCCCACAAGCGGTTGCCACTGGATGGGTCGGACTGGTTaGCATCAACGTGGGACAAGT +
Preference number: 4 (lower is better)
Translates to: CHSTTIGMECSPTSGCHWMGRTG*HQRGTS
Trigger: ACTTGTCCCACGTTGATGGCAACCAGTCCGACCCAT...CCAGTGGCAACCGCTTGTGGGAGAACATTCCATGCCAATGGTTGTTGAATGGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105605.8
CDS-3UTR GCA 90 bp AGCAGAGCCTGCACCTCCACACTGCTCACCAGCTCATCCCTGTGTTCAGATGACCCTGTATTTTGTGGTTaGCATGAACATTACGGGCAG +
Preference number: 4 (lower is better)
Translates to: SRACTSTLLTSSSLCSDDPVFCG*HEHYGQ
Trigger: CTGCCCGTAATGTTCATGGCAACCACAAAATACAGG...GTCATCTGAACACAGGGATGAGCTGGTGAGCAGTGTGGAGGTGCAGGCTCTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR GCA 90 bp AGGCATCTTCCCTCTCGCTGTCTTCTAGCAGAGCCTGCACCTCCACACTGCTCAAGAGTATGTTCCTTCTaGTCCCATATTTCCCAGGCA +
Preference number: 4 (lower is better)
Translates to: RHLPSRCLLAEPAPPHCSRVCSF*SHISQA
Trigger: TGCCTGGGAAATATGGGAGCAGAAGGAACATACTCT...TGAGCAGTGTGGAGGTGCAGGCTCTGCTAGAAGACAGCGAGAGGGAAGATGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129221.8
CDS-3UTR CCA 90 bp CACTGTATTAGCCGTGGAGGGGTGTTCCCTAGTGTTTTGACGGATTCGAGCAGATGGTTGCCATCAACGTaGGACAAGTTGAGCCAGGAG +
Preference number: 4 (lower is better)
Translates to: HCISRGGVFPSVLTDSSRWLPST*DKLSQE
Trigger: CTCCTGGCTCAACTTGTCCCACGTTGATGGCAACCA...TCTGCTCGAATCCGTCAAAACACTAGGGAACACCCCTCCACGGCTAATACAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
CDS-3UTR CCA 90 bp TTTTCCAGGAAACCAGCGCCTCCCACAAACCCTGACAGCAACCTGATTCCAAGTTGGTTGCCATCAACGTaGGACAAGTTGAGCCAGGAG +
Preference number: 4 (lower is better)
Translates to: FSRKPAPPTNPDSNLIPSWLPST*DKLSQE
Trigger: CTCCTGGCTCAACTTGTCCCACGTTGATGGCAACCA...ACTTGGAATCAGGTTGCTGTCAGGGTTTGTGGGAGGCGCTGGTTTCCTGGAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000152674.2
CDS-3UTR CCA 90 bp GGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGGGTTTTTCAACACCGCATGGGTCGGACTaGTTGCCATCAACGTGGGAC +
Preference number: 4 (lower is better)
Translates to: GRRFLIPLSMQLLQGFSTPHGSD*LPSTWD
Trigger: GTCCCACGTTGATGGCAACCAGTCCGACCCATGCGG...TGTTGAAAAACCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105601.9
ENSMUST00000129954.8
ENSMUST00000144264.8
CDS-3UTR CCA 90 bp GTGACTGGGCTAGAGGTCAGAGGTAGCTTTTCCTTTATGCATCACTACAGTGAACCGCATGGGTCGGACTaGTTGCCATCAACGTGGGAC +
Preference number: 4 (lower is better)
Translates to: VTGLEVRGSFSFMHHYSEPHGSD*LPSTWD
Trigger: GTCCCACGTTGATGGCAACCAGTCCGACCCATGCGG...TTCACTGTAGTGATGCATAAAGGAAAAGCTACCTCTGACCTCTAGCCCAGTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000152674.2
CDS-3UTR CCA 90 bp AGGCATCTTCCCTCTCGCTGTCTTCTAGCAGAGCCTGCACCTCCACACTGCTCAGAACGCATAAAGAACTaGGTTCAGGCAGCTGTTTGT +
Preference number: 4 (lower is better)
Translates to: RHLPSRCLLAEPAPPHCSERIKN*VQAAVC
Trigger: ACAAACAGCTGCCTGAACCCAGTTCTTTATGCGTTC...TGAGCAGTGTGGAGGTGCAGGCTCTGCTAGAAGACAGCGAGAGGGAAGATGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CCA 90 bp GCGGTGTCCACAGAAGCCACATTGCCATGTTTAACAGGCTGTCTCTACATTGCCTATCCTGTAAAGATCTaGGCCACGCTGACTGCCAGG +
Preference number: 4 (lower is better)
Translates to: AVSTEATLPCLTGCLYIAYPVKI*ATLTAR
Trigger: CCTGGCAGTCAGCGTGGCCCAGATCTTTACAGGATA...GGCAATGTAGAGACAGCCTGTTAAACATGGCAATGTGGCTTCTGTGGACACCGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105611.8
CDS-3UTR TCA 90 bp CTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGAAAGGTCAGAGCAGTCGCTaGTGTTCCCTGGGCCGGCGC +
Preference number: 4 (lower is better)
Translates to: LEGTHFSTMRSYLFPLKKGQSSR*CSLGRR
Trigger: GCGCCGGCCCAGGGAACATCAGCGACTGCTCTGACC...TTTCTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR TCA 90 bp CATATGGTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTGTGTATATGCCTGGTCAGAGCAGTCGCTaGTGTTCCCTGGGCCGGCGC +
Preference number: 4 (lower is better)
Translates to: HMVTKYLWCASPSSVYMPGQSSR*CSLGRR
Trigger: GCGCCGGCCCAGGGAACATCAGCGACTGCTCTGACC...AGGCATATACACAGAACTGGGAGAAGCACACCAAAGATATTTTGTTACCATATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR TCA 90 bp GAATCTGAAGGGCAGCTATGTTTAAAACAGGGATGTGCTGGAATAGAGAGCTTGCAACGTGGGACAAGTTaGGCCAGGAGCCAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: ESEGQLCLKQGCAGIESLQRGTS*ARSQVL
Trigger: CAGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTG...CAAGCTCTCTATTCCAGCACATCCCTGTTTTAAACATAGCTGCCCTTCAGATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
CDS-3UTR TCA 90 bp CTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGAAAGAAGGGCTGCCGGTCTaGGGGCACAGGCTGTGGCTC +
Preference number: 4 (lower is better)
Translates to: LEGTHFSTMRSYLFPLKKEGLPV*GHRLWL
Trigger: GAGCCACAGCCTGTGCCCTCAGACCGGCAGCCCTTC...TTTCTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR TCA 90 bp CATATGGTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTGTGTATATGCCTGAAGGGCTGCCGGTCTaGGGGCACAGGCTGTGGCTC +
Preference number: 4 (lower is better)
Translates to: HMVTKYLWCASPSSVYMPEGLPV*GHRLWL
Trigger: GAGCCACAGCCTGTGCCCTCAGACCGGCAGCCCTTC...AGGCATATACACAGAACTGGGAGAAGCACACCAAAGATATTTTGTTACCATATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR TCA 90 bp CCCAGGCTCAAAGACAAGGGACAGGTCACACTGGATGCTGTACACACCCTCTCTTCCAGTTGCAGACATTaGCAATTTTGGCATTTCGGG +
Preference number: 4 (lower is better)
Translates to: PRLKDKGQVTLDAVHTLSSSCRH*QFWHFG
Trigger: CCCGAAATGCCAAAATTGTCAATGTCTGCAACTGGA...AGAGAGGGTGTGTACAGCATCCAGTGTGACCTGTCCCTTGTCTTTGAGCCTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
CDS-3UTR TCA 90 bp ACAGGGATGTGCTGGAATAGAGAGCTTGGGGCTCTGCTTCCATTAGAGGAAGGTGCATGCGGACACTCTTaGGTCGTAAGATCATCAGTC +
Preference number: 4 (lower is better)
Translates to: TGMCWNRELGALLPLEEGACGHS*VVRSSV
Trigger: GACTGATGATCTTACGACTCAAGAGTGTCCGCATGC...ACCTTCCTCTAATGGAAGCAGAGCCCCAAGCTCTCTATTCCAGCACATCCCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078634.12
ENSMUST00000105603.2
CDS-3UTR TCA 90 bp CACTGTATTAGCCGTGGAGGGGTGTTCCCTAGTGTTTTGACGGATTCGAGCAGAGCATGCGGACACTCTTaGGTCGTAAGATCATCAGTC +
Preference number: 4 (lower is better)
Translates to: HCISRGGVFPSVLTDSSRACGHS*VVRSSV
Trigger: GACTGATGATCTTACGACTCAAGAGTGTCCGCATGC...TCTGCTCGAATCCGTCAAAACACTAGGGAACACCCCTCCACGGCTAATACAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
CDS-3UTR TCA 90 bp AACATGAGTCGGAGAAGGATATCCTGTAAAGATCTGGGCCACGCTGACTGCCAGGCATGCGGACACTCTTaGGTCGTAAGATCATCAGTC +
Preference number: 4 (lower is better)
Translates to: NMSRRRISCKDLGHADCQACGHS*VVRSSV
Trigger: GACTGATGATCTTACGACTCAAGAGTGTCCGCATGC...CTGGCAGTCAGCGTGGCCCAGATCTTTACAGGATATCCTTCTCCGACTCATGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR TCA 90 bp CCTGTCTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACGCATGCGGACACTCTTaGGTCGTAAGATCATCAGTC +
Preference number: 4 (lower is better)
Translates to: PVLGHHQEEGSSFLCPCNACGHS*VVRSSV
Trigger: GACTGATGATCTTACGACTCAAGAGTGTCCGCATGC...GTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGACAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105601.9
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR TCA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCCCAGCACCATCCGGGTaGTCCTGCGCAGGTTCCTGT +
Preference number: 4 (lower is better)
Translates to: GRHENILTPPTILLTDLIPAPSG*SCAGSC
Trigger: ACAGGAACCTGCGCAGGATCACCCGGATGGTGCTGG...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR TCA 90 bp TCGAGCAGAGTTTTGCTGTTCGATTGTGGAGGAAGTTGGGATGCAGAACTCTCTTGGACAGAGGGAGCCTaGGGTAACTCTTCCCCTCTT +
Preference number: 4 (lower is better)
Translates to: SSRVLLFDCGGSWDAELSWTEGA*GNSSPL
Trigger: AAGAGGGGAAGAGTTACCTCAGGCTCCCTCTGTCCA...AGAGAGTTCTGCATCCCAACTTCCTCCACAATCGAACAGCAAAACTCTGCTCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105597.8
CDS-3UTR GCA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCGAGCCAGGAGCCAGGTaGTGGGGAGCAACTTGCAGG +
Preference number: 4 (lower is better)
Translates to: GRHENILTPPTILLTDLIEPGAR*WGATCR
Trigger: CCTGCAAGTTGCTCCCCAGCACCTGGCTCCTGGCTC...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR GCA 90 bp TCTTCTAGCAGAGCCTGCACCTCCACACTGCTCACCAGCTCATCCCTGTGTTCACCTGTATTTTGTGGTTaGCATGAACATTACGGGCAG +
Preference number: 4 (lower is better)
Translates to: SSSRACTSTLLTSSSLCSPVFCG*HEHYGQ
Trigger: CTGCCCGTAATGTTCATGGCAACCACAAAATACAGG...TGAACACAGGGATGAGCTGGTGAGCAGTGTGGAGGTGCAGGCTCTGCTAGAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR GCA 90 bp ATGAGTCGGAGAAGGATATCCTGTAAAGATCTGGGCCACGCTGACTGCCAGGGTCAATCTATGGACCCCTaGCTGTATTTTGTGGTTGCC +
Preference number: 4 (lower is better)
Translates to: MSRRRISCKDLGHADCQGQSMDP*LYFVVA
Trigger: GGCAACCACAAAATACAGGCAGGGGTCCATAGATTG...ACCCTGGCAGTCAGCGTGGCCCAGATCTTTACAGGATATCCTTCTCCGACTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR GCA 90 bp GCGGTTAGGACCGCATGGGTCGGACTGGTTGCCATCAACGTGGGACAAGTTGAGTCTGAGCTTTTGGAATaGAGACTTAGAGAAAGCTTC +
Preference number: 4 (lower is better)
Translates to: AVRTAWVGLVAINVGQVESELLE*RLRESF
Trigger: GAAGCTTTCTCTAAGTCTGCATTCCAAAAGCTCAGA...CTCAACTTGTCCCACGTTGATGGCAACCAGTCCGACCCATGCGGTCCTAACCGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
CDS-3UTR GCA 90 bp CTTCTAGCAGAGCCTGCACCTCCACACTGCTCACCAGCTCATCCCTGTGTTCAGTCATTCCTCTGTCCATaGAACTCTTGCAGGGTTTTT +
Preference number: 4 (lower is better)
Translates to: LLAEPAPPHCSPAHPCVQSFLCP*NSCRVF
Trigger: AAAAACCCTGCAAGAGTTGCATGGACAGAGGAATGA...CTGAACACAGGGATGAGCTGGTGAGCAGTGTGGAGGTGCAGGCTCTGCTAGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105611.8
CDS-3UTR CCA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCCCAGGAGCCAGGTGCTaGGGAGCAACTTGCAGGAGC +
Preference number: 4 (lower is better)
Translates to: GRHENILTPPTILLTDLIPGARC*GATCRS
Trigger: GCTCCTGCAAGTTGCTCCCCAGCACCTGGCTCCTGG...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR CCA 90 bp GTCTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGGTTGCCATCAACGTaGGACAAGTTGAGCCAGGAG +
Preference number: 4 (lower is better)
Translates to: VLGHHQEEGSSFLCPCNSWLPST*DKLSQE
Trigger: CTCCTGGCTCAACTTGTCCCACGTTGATGGCAACCA...AGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105601.9
ENSMUST00000129954.8
ENSMUST00000144264.8
CDS-3UTR CCA 90 bp CCTCTGGCTGCTCCTCTGCAGGACTTGGTAGTGAATCCTTTTTATGTGACTCCTTGGTTGCCATCAACGTaGGACAAGTTGAGCCAGGAG +
Preference number: 4 (lower is better)
Translates to: PLAAPLQDLVVNPFYVTPWLPST*DKLSQE
Trigger: CTCCTGGCTCAACTTGTCCCACGTTGATGGCAACCA...AGGAGTCACATAAAAAGGATTCACTACCAAGTCCTGCAGAGGAGCAGCCAGAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
CDS-3UTR CCA 90 bp CACCAAGAGTCCAGGTTAGTTGACTGTGTTGGTCTTCCTTTGGAGTTCCACAGGTGGTTGCCATCAACGTaGGACAAGTTGAGCCAGGAG +
Preference number: 4 (lower is better)
Translates to: HQESRLVDCVGLPLEFHRWLPST*DKLSQE
Trigger: CTCCTGGCTCAACTTGTCCCACGTTGATGGCAACCA...CCTGTGGAACTCCAAAGGAAGACCAACACAGTCAACTAACCTGGACTCTTGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105604.8
CDS-3UTR CCA 90 bp GGATATCCTGTAAAGATCTGGGCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGGAACGCATAAAGAACTaGGTTCAGGCAGCTGTTTGT +
Preference number: 4 (lower is better)
Translates to: GYPVKIWATLTARVGFREERIKN*VQAAVC
Trigger: ACAAACAGCTGCCTGAACCCAGTTCTTTATGCGTTC...CTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGCCCAGATCTTTACAGGATATCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR CCA 90 bp ACAAGGGACAGGTCACACTGGATGCTGTACACACCCTCTCTGGGAGTCCAGCTTGAACGCATAAAGAACTaGGTTCAGGCAGCTGTTTGT +
Preference number: 4 (lower is better)
Translates to: TRDRSHWMLYTPSLGVQLERIKN*VQAAVC
Trigger: ACAAACAGCTGCCTGAACCCAGTTCTTTATGCGTTC...AAGCTGGACTCCCAGAGAGGGTGTGTACAGCATCCAGTGTGACCTGTCCCTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
CDS-3UTR CCA 90 bp GATCTGGGCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGGATACAAGGAAATGGAACGCATAAAGAACTaGGTTCAGGCAGCTGTTTGT +
Preference number: 4 (lower is better)
Translates to: DLGHADCQGWLQRGYKEMERIKN*VQAAVC
Trigger: ACAAACAGCTGCCTGAACCCAGTTCTTTATGCGTTC...CATTTCCTTGTATCCTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGCCCAGATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR CCA 90 bp CTTCTAGCAGAGCCTGCACCTCCACACTGCTCACCAGCTCATCCCTGTGTTCAGGATTGTGGAGGAAGTTaGGATGCAGAACTCTCTAAA +
Preference number: 4 (lower is better)
Translates to: LLAEPAPPHCSPAHPCVQDCGGS*DAELSK
Trigger: TTTAGAGAGTTCTGCATCCCAACTTCCTCCACAATC...CTGAACACAGGGATGAGCTGGTGAGCAGTGTGGAGGTGCAGGCTCTGCTAGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CCA 90 bp GATCTGGGCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGGATACAAGGAAATGTTTGCTGTTCGATTGTaGAGGAAGTTGGGATGCAGA +
Preference number: 4 (lower is better)
Translates to: DLGHADCQGWLQRGYKEMFAVRL*RKLGCR
Trigger: TCTGCATCCCAACTTCCTCCACAATCGAACAGCAAA...CATTTCCTTGTATCCTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGCCCAGATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR CCA 90 bp CGCTGTCTTCTAGCAGAGCCTGCACCTCCACACTGCTCACCAGCTCATCCCTGTCTCTGTCTGAGCTTTTaGAATGCAGACTTAGAGAAA +
Preference number: 4 (lower is better)
Translates to: RCLLAEPAPPHCSPAHPCLCLSF*NADLEK
Trigger: TTTCTCTAAGTCTGCATTCCAAAAGCTCAGACAGAG...ACAGGGATGAGCTGGTGAGCAGTGTGGAGGTGCAGGCTCTGCTAGAAGACAGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063036.14
CDS-3UTR TCA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCCAACGTGGGACAAGTTaGGCCAGGAGCCAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: GRHENILTPPTILLTDLIQRGTS*ARSQVL
Trigger: CAGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTG...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR TCA 90 bp ATGGTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTGTGTATATGCCTTTTGAAGGGCTGCCGGTCTaGGGGCACAGGCTGTGGCTC +
Preference number: 4 (lower is better)
Translates to: MVTKYLWCASPSSVYMPFEGLPV*GHRLWL
Trigger: GAGCCACAGCCTGTGCCCTCAGACCGGCAGCCCTTC...AAAAGGCATATACACAGAACTGGGAGAAGCACACCAAAGATATTTTGTTACCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000092729.11
ENSMUST00000154906.8
CDS-3UTR TCA 90 bp GACCTCCTTAAGGATCTAAATCTTAGACTGGTATCAGGTGCTGTGTTTTTATATGAAGGGCTGCCGGTCTaGGGGCACAGGCTGTGGCTC +
Preference number: 4 (lower is better)
Translates to: DLLKDLNLRLVSGAVFLYEGLPV*GHRLWL
Trigger: GAGCCACAGCCTGTGCCCTCAGACCGGCAGCCCTTC...ATATAAAAACACAGCACCTGATACCAGTCTAAGATTTAGATCCTTAAGGAGGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105602.8
CDS-3UTR TCA 90 bp TCTGCTCTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTGAAGGGCTGCCGGTCTaGGGGCACAGGCTGTGGCTC +
Preference number: 4 (lower is better)
Translates to: SALYGYICHMVTKYLWCAEGLPV*GHRLWL
Trigger: GAGCCACAGCCTGTGCCCTCAGACCGGCAGCCCTTC...AGCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAGAGCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR TCA 90 bp TGCCATTCAACAACCATTGGCATGGAATGTTCTCCCACAAGCGGTTGCCACTGGCTGCCAGAGCAAGGTTaGAAATGTAGATGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: CHSTTIGMECSPTSGCHWLPEQG*KCRCWW
Trigger: CCACCAACATCTACATTTTCAACCTTGCTCTGGCAG...CCAGTGGCAACCGCTTGTGGGAGAACATTCCATGCCAATGGTTGTTGAATGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105605.8
CDS-3UTR TCA 90 bp GCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGGGCTGCCAGAGCAAGGTTaGAAATGTAGATGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: AIIRKKVPHSSVHATLAGLPEQG*KCRCWW
Trigger: CCACCAACATCTACATTTTCAACCTTGCTCTGGCAG...CCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR TCA 90 bp AAGATCTGGGCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGGATACAAGGAAATCCAGTTGCAGACATTaGCAATTTTGGCATTTCGGG +
Preference number: 4 (lower is better)
Translates to: KIWATLTARVGFREDTRKSSCRH*QFWHFG
Trigger: CCCGAAATGCCAAAATTGTCAATGTCTGCAACTGGA...TTTCCTTGTATCCTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGCCCAGATCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR TCA 90 bp AAAGACAAGGGACAGGTCACACTGGATGCTGTACACACCCTCTCTGGGAGTCCATCCAGTTGCAGACATTaGCAATTTTGGCATTTCGGG +
Preference number: 4 (lower is better)
Translates to: KDKGQVTLDAVHTLSGSPSSCRH*QFWHFG
Trigger: CCCGAAATGCCAAAATTGTCAATGTCTGCAACTGGA...TGGACTCCCAGAGAGGGTGTGTACAGCATCCAGTGTGACCTGTCCCTTGTCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
CDS-3UTR TCA 90 bp GCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGGATACAAGGAAATGGTATGCTTCCAGTTGCAGACATTaGCAATTTTGGCATTTCGGG +
Preference number: 4 (lower is better)
Translates to: ATLTARVGFREDTRKWYASSCRH*QFWHFG
Trigger: CCCGAAATGCCAAAATTGTCAATGTCTGCAACTGGA...AGCATACCATTTCCTTGTATCCTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR TCA 90 bp GGAAGCAGCAGAGAAACCCATTTTTGCCTGGCTTTGATTTCTGAGCTGGAAGCATGGGATGAGAGAACGTaGGGGTGCAATCTATGGACC +
Preference number: 4 (lower is better)
Translates to: GSSRETHFCLALISELEAWDERT*GCNLWT
Trigger: GGTCCATAGATTGCACCCTCACGTTCTCTCATCCCA...TGCTTCCAGCTCAGAAATCAAAGCCAGGCAAAAATGGGTTTCTCTGCTGCTTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
CDS-3UTR TCA 90 bp GAGAGCGGTGTCCACAGAAGCCACATTGCCATGTTTAACAGGCTGTCTCTACATGCATGCGGACACTCTTaGGTCGTAAGATCATCAGTC +
Preference number: 4 (lower is better)
Translates to: ESGVHRSHIAMFNRLSLHACGHS*VVRSSV
Trigger: GACTGATGATCTTACGACTCAAGAGTGTCCGCATGC...ATGTAGAGACAGCCTGTTAAACATGGCAATGTGGCTTCTGTGGACACCGCTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR TCA 90 bp CTATGCTGGCTAGTCACAGTTGAGGATAAACAGAACAGTGAGAGAGGGCTGTGGGCATGCGGACACTCTTaGGTCGTAAGATCATCAGTC +
Preference number: 4 (lower is better)
Translates to: LCWLVTVEDKQNSERGLWACGHS*VVRSSV
Trigger: GACTGATGATCTTACGACTCAAGAGTGTCCGCATGC...CCACAGCCCTCTCTCACTGTTCTGTTTATCCTCAACTGTGACTAGCCAGCATAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
CDS-3UTR TCA 90 bp TATCCTGTAAAGATCTGGGCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGGATTTCCATCTCTCTGTCTaGGCTTTTGGAATGCAGACT +
Preference number: 4 (lower is better)
Translates to: YPVKIWATLTARVGFREDFHLSV*AFGMQT
Trigger: AGTCTGCATTCCAAAAGCTCAGACAGAGAGATGGAA...ATCCTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGCCCAGATCTTTACAGGATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147171.8
CDS-3UTR GCA 90 bp GCAGGGTTTTTCAACATGAGTCGGAGAAGGATATCCTGTAAAGATCTGGGCCACATGGGTCGGACTGGTTaGCATCAACGTGGGACAAGT +
Preference number: 4 (lower is better)
Translates to: AGFFNMSRRRISCKDLGHMGRTG*HQRGTS
Trigger: ACTTGTCCCACGTTGATGGCAACCAGTCCGACCCAT...GTGGCCCAGATCTTTACAGGATATCCTTCTCCGACTCATGTTGAAAAACCCTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
ENSMUST00000129954.8
ENSMUST00000144264.8
CDS-3UTR GCA 90 bp TCTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTATGGGTCGGACTGGTTaGCATCAACGTGGGACAAGT +
Preference number: 4 (lower is better)
Translates to: SWAIIRKKVPHSSVHATLMGRTG*HQRGTS
Trigger: ACTTGTCCCACGTTGATGGCAACCAGTCCGACCCAT...AAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105601.9
ENSMUST00000129954.8
ENSMUST00000144264.8
CDS-3UTR GCA 90 bp CCATTCAACAACCATTGGCATGGAATGTTCTCCCACAAGCGGTTGCCACTGGGGCCTGTATTTTGTGGTTaGCATGAACATTACGGGCAG +
Preference number: 4 (lower is better)
Translates to: PFNNHWHGMFSHKRLPLGPVFCG*HEHYGQ
Trigger: CTGCCCGTAATGTTCATGGCAACCACAAAATACAGG...CCCCAGTGGCAACCGCTTGTGGGAGAACATTCCATGCCAATGGTTGTTGAATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105605.8
CDS-3UTR GCA 90 bp CCGGATTCCTGTCTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCCCTGTATTTTGTGGTTaGCATGAACATTACGGGCAG +
Preference number: 4 (lower is better)
Translates to: PDSCLGPSSGRRFLIPLSPVFCG*HEHYGQ
Trigger: CTGCCCGTAATGTTCATGGCAACCACAAAATACAGG...GGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGACAGGAATCCGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR GCA 90 bp ACAGGGATGTGCTGGAATAGAGAGCTTGGGGCTCTGCTTCCATTAGAGGAAGGTCAATCTATGGACCCCTaGCTGTATTTTGTGGTTGCC +
Preference number: 4 (lower is better)
Translates to: TGMCWNRELGALLPLEEGQSMDP*LYFVVA
Trigger: GGCAACCACAAAATACAGGCAGGGGTCCATAGATTG...ACCTTCCTCTAATGGAAGCAGAGCCCCAAGCTCTCTATTCCAGCACATCCCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000078634.12
ENSMUST00000105603.2
CDS-3UTR GCA 90 bp CCTGTCTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACCAATCTATGGACCCCTaGCTGTATTTTGTGGTTGCC +
Preference number: 4 (lower is better)
Translates to: PVLGHHQEEGSSFLCPCNQSMDP*LYFVVA
Trigger: GGCAACCACAAAATACAGGCAGGGGTCCATAGATTG...GTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGACAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR GCA 90 bp GACAGGTCACACTGGATGCTGTACACACCCTCTCTGGGAGTCCAGCTTTTTCTTCAATCTATGGACCCCTaGCTGTATTTTGTGGTTGCC +
Preference number: 4 (lower is better)
Translates to: DRSHWMLYTPSLGVQLFLQSMDP*LYFVVA
Trigger: GGCAACCACAAAATACAGGCAGGGGTCCATAGATTG...AAGAAAAAGCTGGACTCCCAGAGAGGGTGTGTACAGCATCCAGTGTGACCTGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000129221.8
ENSMUST00000144264.8
ENSMUST00000147171.8
CDS-3UTR CCA 90 bp GGTGTCCACAGAAGCCACATTGCCATGTTTAACAGGCTGTCTCTACATTGCCAATGGTTGCCATCAACGTaGGACAAGTTGAGCCAGGAG +
Preference number: 4 (lower is better)
Translates to: GVHRSHIAMFNRLSLHCQWLPST*DKLSQE
Trigger: CTCCTGGCTCAACTTGTCCCACGTTGATGGCAACCA...TTGGCAATGTAGAGACAGCCTGTTAAACATGGCAATGTGGCTTCTGTGGACACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105611.8
ENSMUST00000144264.8
CDS-3UTR CCA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCCCGCATGGGTCGGACTaGTTGCCATCAACGTGGGAC +
Preference number: 4 (lower is better)
Translates to: GRHENILTPPTILLTDLIPHGSD*LPSTWD
Trigger: GTCCCACGTTGATGGCAACCAGTCCGACCCATGCGG...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR CCA 90 bp AGCGTGAATAGCCAGAGAGGAATGACTTTGAATGATGCAGGATCAGATGCTTTTCCGCATGGGTCGGACTaGTTGCCATCAACGTGGGAC +
Preference number: 4 (lower is better)
Translates to: SVNSQRGMTLNDAGSDAFPHGSD*LPSTWD
Trigger: GTCCCACGTTGATGGCAACCAGTCCGACCCATGCGG...AAAAGCATCTGATCCTGCATCATTCAAAGTCATTCCTCTCTGGCTATTCACGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000152674.2
CDS-3UTR CCA 90 bp AAACCAGCGCCTCCCACAAACCCTGACAGCAACCTGATTCCAAGTAGATGGCAGTGCCAGGAAACAGTCTaGAAAGTGGTTTCTGGAATC +
Preference number: 4 (lower is better)
Translates to: KPAPPTNPDSNLIPSRWQCQETV*KVVSGI
Trigger: GATTCCAGAAACCACTTTCCAGACTGTTTCCTGGCA...CTGCCATCTACTTGGAATCAGGTTGCTGTCAGGGTTTGTGGGAGGCGCTGGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000147171.8
CDS-3UTR CCA 90 bp AAGATCTGGGCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGGATACAAGGAAATGCCAGGAAACAGTCTaGAAAGTGGTTTCTGGAATC +
Preference number: 4 (lower is better)
Translates to: KIWATLTARVGFREDTRKCQETV*KVVSGI
Trigger: GATTCCAGAAACCACTTTCCAGACTGTTTCCTGGCA...TTTCCTTGTATCCTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGCCCAGATCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR CCA 90 bp ACAAGGGACAGGTCACACTGGATGCTGTACACACCCTCTCTGGGAGTCCAGCTTGATTGTGGAGGAAGTTaGGATGCAGAACTCTCTAAA +
Preference number: 4 (lower is better)
Translates to: TRDRSHWMLYTPSLGVQLDCGGS*DAELSK
Trigger: TTTAGAGAGTTCTGCATCCCAACTTCCTCCACAATC...AAGCTGGACTCCCAGAGAGGGTGTGTACAGCATCCAGTGTGACCTGTCCCTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
CDS-3UTR CCA 90 bp CCCAGGCTCAAAGACAAGGGACAGGTCACACTGGATGCTGTACACACCCTCTCTGATTGTGGAGGAAGTTaGGATGCAGAACTCTCTAAA +
Preference number: 4 (lower is better)
Translates to: PRLKDKGQVTLDAVHTLSDCGGS*DAELSK
Trigger: TTTAGAGAGTTCTGCATCCCAACTTCCTCCACAATC...AGAGAGGGTGTGTACAGCATCCAGTGTGACCTGTCCCTTGTCTTTGAGCCTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
CDS-3UTR CCA 90 bp TGTGAAAGAAGATGGCCCCCAGGCTCAAAGACAAGGGACAGGTCACACTGGATGTTTGCTGTTCGATTGTaGAGGAAGTTGGGATGCAGA +
Preference number: 4 (lower is better)
Translates to: CERRWPPGSKTRDRSHWMFAVRL*RKLGCR
Trigger: TCTGCATCCCAACTTCCTCCACAATCGAACAGCAAA...CATCCAGTGTGACCTGTCCCTTGTCTTTGAGCCTGGGGGCCATCTTCTTTCACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
CDS-3UTR CCA 90 bp AAGATCTGGGCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGGATACAAGGAAATTTGCTGTTCGATTGTaGAGGAAGTTGGGATGCAGA +
Preference number: 4 (lower is better)
Translates to: KIWATLTARVGFREDTRKFAVRL*RKLGCR
Trigger: TCTGCATCCCAACTTCCTCCACAATCGAACAGCAAA...TTTCCTTGTATCCTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGCCCAGATCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR CCA 90 bp TGCACACAGTGGCATGAGAGCGGTGTCCACAGAAGCCACATTGCCATGTTTAACGGTTCCTCATTCCTCTaGTGGTTAGTTCGATCCACT +
Preference number: 4 (lower is better)
Translates to: CTQWHESGVHRSHIAMFNGSSFL*WLVRST
Trigger: AGTGGATCGAACTAACCACCAGAGGAATGAGGAACC...GTTAAACATGGCAATGTGGCTTCTGTGGACACCGCTCTCATGCCACTGTGTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063036.14
CDS-3UTR CCA 90 bp GATCTGGGCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGGATACAAGGAAATGTCCAGATTTTCTAGCTaGTGGTTAGTTCGATCCACT +
Preference number: 4 (lower is better)
Translates to: DLGHADCQGWLQRGYKEMSRFSS*WLVRST
Trigger: AGTGGATCGAACTAACCACCAGCTAGAAAATCTGGA...CATTTCCTTGTATCCTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGCCCAGATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147171.8
CDS-3UTR CCA 90 bp AACATGAGTCGGAGAAGGATATCCTGTAAAGATCTGGGCCACGCTGACTGCCAGTGTACACACCCTCTCTaGGAGTCCAGCTTTTTCTTC +
Preference number: 4 (lower is better)
Translates to: NMSRRRISCKDLGHADCQCTHPL*ESSFFF
Trigger: GAAGAAAAAGCTGGACTCCCAGAGAGGGTGTGTACA...CTGGCAGTCAGCGTGGCCCAGATCTTTACAGGATATCCTTCTCCGACTCATGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000154941.8
3UTR CAA 72 bp TACTGGCTAAGGGTGGTCAGGAATGCAGGTAGTCATTaGGACCAATGGAGAGATGGAAGTCTGGGGAGATAC +
Preference number: 4 (lower is better)
Translates to: YWLRVVRNAGSH*DQWRDGSLGRY
Trigger: GTATCTCCCCAGACTTCCATCTCTCCATTGGTCCAAATGACTACCTGCATTCCTGACCACCCTTAGCCAGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
CDS-3UTR TCA 90 bp CCATATGGTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTGTGTATATGCCCAACGTGGGACAAGTTaGGCCAGGAGCCAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: PYGNKISLVCFSQFCVYAQRGTS*ARSQVL
Trigger: CAGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTG...GGCATATACACAGAACTGGGAGAAGCACACCAAAGATATTTTGTTACCATATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR TCA 90 bp AATCTACTCATTCCATTACTGAAGTGTGAGGCTTGTCTGTGGGAGACAAACATTCAACGTGGGACAAGTTaGGCCAGGAGCCAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: NLLIPLLKCEACLWETNIQRGTS*ARSQVL
Trigger: CAGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTG...AATGTTTGTCTCCCACAGACAAGCCTCACACTTCAGTAATGGAATGAGTAGATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105604.8
CDS-3UTR TCA 90 bp GTTCCTTGTTTATTTGCACACAGTGGCATGAGAGCGGTGTCCACAGAAGCCACACTGCCAGAGCAAGGTTaGAAATGTAGATGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: VPCLFAHSGMRAVSTEATLPEQG*KCRCWW
Trigger: CCACCAACATCTACATTTTCAACCTTGCTCTGGCAG...TGTGGCTTCTGTGGACACCGCTCTCATGCCACTGTGTGCAAATAAACAAGGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR TCA 90 bp AGCGGTGTCCACAGAAGCCACATTGCCATGTTTAACAGGCTGTCTCTACATTGCCTGCCAGAGCAAGGTTaGAAATGTAGATGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: SGVHRSHIAMFNRLSLHCLPEQG*KCRCWW
Trigger: CCACCAACATCTACATTTTCAACCTTGCTCTGGCAG...GCAATGTAGAGACAGCCTGTTAAACATGGCAATGTGGCTTCTGTGGACACCGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR TCA 90 bp CTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCTGCCAGAGCAAGGTTaGAAATGTAGATGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: LGPSSGRRFLIPLSMQLLLPEQG*KCRCWW
Trigger: CCACCAACATCTACATTTTCAACCTTGCTCTGGCAG...CAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR TCA 90 bp AGTAGTGGCCTGCAGTCTCTTCCTTCTGAGTGCTTGACACAGTCTGAGTGTCTCTCCAGTTGCAGACATTaGCAATTTTGGCATTTCGGG +
Preference number: 4 (lower is better)
Translates to: SSGLQSLPSECLTQSECLSSCRH*QFWHFG
Trigger: CCCGAAATGCCAAAATTGTCAATGTCTGCAACTGGA...GAGACACTCAGACTGTGTCAAGCACTCAGAAGGAAGAGACTGCAGGCCACTACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000147171.8
CDS-3UTR TCA 90 bp TTTAAAACAGGGATGTGCTGGAATAGAGAGCTTGGGGCTCTGCTTCCATTAGAGTGGGATGAGAGAACGTaGGGGTGCAATCTATGGACC +
Preference number: 4 (lower is better)
Translates to: FKTGMCWNRELGALLPLEWDERT*GCNLWT
Trigger: GGTCCATAGATTGCACCCTCACGTTCTCTCATCCCA...CTCTAATGGAAGCAGAGCCCCAAGCTCTCTATTCCAGCACATCCCTGTTTTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
CDS-3UTR TCA 90 bp TTTTTCAACATGAGTCGGAGAAGGATATCCTGTAAAGATCTGGGCCACGCTGACTGGGATGAGAGAACGTaGGGGTGCAATCTATGGACC +
Preference number: 4 (lower is better)
Translates to: FFNMSRRRISCKDLGHADWDERT*GCNLWT
Trigger: GGTCCATAGATTGCACCCTCACGTTCTCTCATCCCA...GTCAGCGTGGCCCAGATCTTTACAGGATATCCTTCTCCGACTCATGTTGAAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR TCA 90 bp TATCTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGCCAGCACCATCCGGGTaGTCCTGCGCAGGTTCCTGT +
Preference number: 4 (lower is better)
Translates to: YLEGTHFSTMRSYLFPLKPAPSG*SCAGSC
Trigger: ACAGGAACCTGCGCAGGATCACCCGGATGGTGCTGG...CTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAGATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR TCA 90 bp AACACGCAATACGGCAAACCAGACAATACATTAGACATTACACTTACAACTCCTCCAGCACCATCCGGGTaGTCCTGCGCAGGTTCCTGT +
Preference number: 4 (lower is better)
Translates to: NTQYGKPDNTLDITLTTPPAPSG*SCAGSC
Trigger: ACAGGAACCTGCGCAGGATCACCCGGATGGTGCTGG...AGGAGTTGTAAGTGTAATGTCTAATGTATTGTCTGGTTTGCCGTATTGCGTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR TCA 90 bp CATATGGTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTGTGTATATGCCTCCAGCACCATCCGGGTaGTCCTGCGCAGGTTCCTGT +
Preference number: 4 (lower is better)
Translates to: HMVTKYLWCASPSSVYMPPAPSG*SCAGSC
Trigger: ACAGGAACCTGCGCAGGATCACCCGGATGGTGCTGG...AGGCATATACACAGAACTGGGAGAAGCACACCAAAGATATTTTGTTACCATATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR TCA 90 bp GTTGATCACAATTCACATACCACAGAGTATTGTGGTCCATTGGATGTTTCTGTACCAGCACCATCCGGGTaGTCCTGCGCAGGTTCCTGT +
Preference number: 4 (lower is better)
Translates to: VDHNSHTTEYCGPLDVSVPAPSG*SCAGSC
Trigger: ACAGGAACCTGCGCAGGATCACCCGGATGGTGCTGG...TACAGAAACATCCAATGGACCACAATACTCTGTGGTATGTGAATTGTGATCAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105607.8
CDS-3UTR TCA 90 bp GGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTCCAGCACCATCCGGGTaGTCCTGCGCAGGTTCCTGT +
Preference number: 4 (lower is better)
Translates to: GYICHMVTKYLWCASPSSPAPSG*SCAGSC
Trigger: ACAGGAACCTGCGCAGGATCACCCGGATGGTGCTGG...AGAACTGGGAGAAGCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR TCA 90 bp AGGCTCAAAGACAAGGGACAGGTCACACTGGATGCTGTACACACCCTCTCTGGGTCATTTTGGTATATCTaGGGTAACTCTTCCCCTCTT +
Preference number: 4 (lower is better)
Translates to: RLKDKGQVTLDAVHTLSGSFWYI*GNSSPL
Trigger: AAGAGGGGAAGAGTTACCTCAGATATACCAAAATGA...CCCAGAGAGGGTGTGTACAGCATCCAGTGTGACCTGTCCCTTGTCTTTGAGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000147171.8
CDS-3UTR GCA 90 bp TATCTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGGAGCCAGGAGCCAGGTaGTGGGGAGCAACTTGCAGG +
Preference number: 4 (lower is better)
Translates to: YLEGTHFSTMRSYLFPLKEPGAR*WGATCR
Trigger: CCTGCAAGTTGCTCCCCAGCACCTGGCTCCTGGCTC...CTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAGATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR GCA 90 bp TTTAAAACAGGGATGTGCTGGAATAGAGAGCTTGGGGCTCTGCTTCCATTAGAGATGGGTCGGACTGGTTaGCATCAACGTGGGACAAGT +
Preference number: 4 (lower is better)
Translates to: FKTGMCWNRELGALLPLEMGRTG*HQRGTS
Trigger: ACTTGTCCCACGTTGATGGCAACCAGTCCGACCCAT...CTCTAATGGAAGCAGAGCCCCAAGCTCTCTATTCCAGCACATCCCTGTTTTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
CDS-3UTR GCA 90 bp GAGAGCGGTGTCCACAGAAGCCACATTGCCATGTTTAACAGGCTGTCTCTACATCAATCTATGGACCCCTaGCTGTATTTTGTGGTTGCC +
Preference number: 4 (lower is better)
Translates to: ESGVHRSHIAMFNRLSLHQSMDP*LYFVVA
Trigger: GGCAACCACAAAATACAGGCAGGGGTCCATAGATTG...ATGTAGAGACAGCCTGTTAAACATGGCAATGTGGCTTCTGTGGACACCGCTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CCA 90 bp TATCTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGCCAGGAGCCAGGTGCTaGGGAGCAACTTGCAGGAGC +
Preference number: 4 (lower is better)
Translates to: YLEGTHFSTMRSYLFPLKPGARC*GATCRS
Trigger: GCTCCTGCAAGTTGCTCCCCAGCACCTGGCTCCTGG...CTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAGATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR CCA 90 bp TTATCTTCCCTTCTACTCTCTGGCTGTGCAAGATCCACACTGACATGCAAACACTGGTTGCCATCAACGTaGGACAAGTTGAGCCAGGAG +
Preference number: 4 (lower is better)
Translates to: LSSLLLSGCARSTLTCKHWLPST*DKLSQE
Trigger: CTCCTGGCTCAACTTGTCCCACGTTGATGGCAACCA...GTGTTTGCATGTCAGTGTGGATCTTGCACAGCCAGAGAGTAGAAGGGAAGATAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
CDS-3UTR CCA 90 bp ATCAGGAGCAAGCTAGTCATTAGCATTCCTCCACAGTGTCTGTATCAAATTTCTCCGCATGGGTCGGACTaGTTGCCATCAACGTGGGAC +
Preference number: 4 (lower is better)
Translates to: IRSKLVISIPPQCLYQISPHGSD*LPSTWD
Trigger: GTCCCACGTTGATGGCAACCAGTCCGACCCATGCGG...AGAAATTTGATACAGACACTGTGGAGGAATGCTAATGACTAGCTTGCTCCTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105611.8
CDS-3UTR CCA 90 bp GGAAGCAGCAGAGAAACCCATTTTTGCCTGGCTTTGATTTCTGAGCTGGAAGCATTACGGGCAGACCAATaGCAGAAGAGAGGATCCAGT +
Preference number: 4 (lower is better)
Translates to: GSSRETHFCLALISELEALRADQ*QKRGSS
Trigger: ACTGGATCCTCTCTTCTGCCATTGGTCTGCCCGTAA...TGCTTCCAGCTCAGAAATCAAAGCCAGGCAAAAATGGGTTTCTCTGCTGCTTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
CDS-3UTR CCA 90 bp ATTCCTGCTCAGAATGGTGGCATGATGAGCTTACTGGGTGACTCTGAGTTTGACTTACGGGCAGACCAATaGCAGAAGAGAGGATCCAGT +
Preference number: 4 (lower is better)
Translates to: IPAQNGGMMSLLGDSEFDLRADQ*QKRGSS
Trigger: ACTGGATCCTCTCTTCTGCCATTGGTCTGCCCGTAA...GTCAAACTCAGAGTCACCCAGTAAGCTCATCATGCCACCATTCTGAGCAGGAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105607.8
CDS-3UTR CCA 90 bp TCTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTTTACGGGCAGACCAATaGCAGAAGAGAGGATCCAGT +
Preference number: 4 (lower is better)
Translates to: SWAIIRKKVPHSSVHATLLRADQ*QKRGSS
Trigger: ACTGGATCCTCTCTTCTGCCATTGGTCTGCCCGTAA...AAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR CCA 90 bp CATTCCTCTGTCCATGCAACTCTTGCAGGGTTTTTCAACATGAGTCGGAGAAGGTTACGGGCAGACCAATaGCAGAAGAGAGGATCCAGT +
Preference number: 4 (lower is better)
Translates to: HSSVHATLAGFFNMSRRRLRADQ*QKRGSS
Trigger: ACTGGATCCTCTCTTCTGCCATTGGTCTGCCCGTAA...CCTTCTCCGACTCATGTTGAAAAACCCTGCAAGAGTTGCATGGACAGAGGAATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR CCA 90 bp ACAGGGATGTGCTGGAATAGAGAGCTTGGGGCTCTGCTTCCATTAGAGGAAGGTTGCCAGGAAACAGTCTaGAAAGTGGTTTCTGGAATC +
Preference number: 4 (lower is better)
Translates to: TGMCWNRELGALLPLEEGCQETV*KVVSGI
Trigger: GATTCCAGAAACCACTTTCCAGACTGTTTCCTGGCA...ACCTTCCTCTAATGGAAGCAGAGCCCCAAGCTCTCTATTCCAGCACATCCCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078634.12
ENSMUST00000105603.2
CDS-3UTR CCA 90 bp AACATGAGTCGGAGAAGGATATCCTGTAAAGATCTGGGCCACGCTGACTGCCAGTGCCAGGAAACAGTCTaGAAAGTGGTTTCTGGAATC +
Preference number: 4 (lower is better)
Translates to: NMSRRRISCKDLGHADCQCQETV*KVVSGI
Trigger: GATTCCAGAAACCACTTTCCAGACTGTTTCCTGGCA...CTGGCAGTCAGCGTGGCCCAGATCTTTACAGGATATCCTTCTCCGACTCATGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR CCA 90 bp TTATGTGTCTCGATGTGGATAACAACGAGTGGGGCATGGGGAGGAAGCAGCAGAGAACGCATAAAGAACTaGGTTCAGGCAGCTGTTTGT +
Preference number: 4 (lower is better)
Translates to: LCVSMWITTSGAWGGSSRERIKN*VQAAVC
Trigger: ACAAACAGCTGCCTGAACCCAGTTCTTTATGCGTTC...TCTGCTGCTTCCTCCCCATGCCCCACTCGTTGTTATCCACATCGAGACACATAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
CDS-3UTR CCA 90 bp AACATGAGTCGGAGAAGGATATCCTGTAAAGATCTGGGCCACGCTGACTGCCAGGAACGCATAAAGAACTaGGTTCAGGCAGCTGTTTGT +
Preference number: 4 (lower is better)
Translates to: NMSRRRISCKDLGHADCQERIKN*VQAAVC
Trigger: ACAAACAGCTGCCTGAACCCAGTTCTTTATGCGTTC...CTGGCAGTCAGCGTGGCCCAGATCTTTACAGGATATCCTTCTCCGACTCATGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR CCA 90 bp AGAGCTTGGGGCTCTGCTTCCATTAGAGGAAGGTCAGGTGGGTCAGGAAGGATAGATTGTGGAGGAAGTTaGGATGCAGAACTCTCTAAA +
Preference number: 4 (lower is better)
Translates to: RAWGSASIRGRSGGSGRIDCGGS*DAELSK
Trigger: TTTAGAGAGTTCTGCATCCCAACTTCCTCCACAATC...TATCCTTCCTGACCCACCTGACCTTCCTCTAATGGAAGCAGAGCCCCAAGCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
CDS-3UTR CCA 90 bp AAGATCTGGGCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGGATACAAGGAAAGATTGTGGAGGAAGTTaGGATGCAGAACTCTCTAAA +
Preference number: 4 (lower is better)
Translates to: KIWATLTARVGFREDTRKDCGGS*DAELSK
Trigger: TTTAGAGAGTTCTGCATCCCAACTTCCTCCACAATC...TTTCCTTGTATCCTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGCCCAGATCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR CCA 90 bp GCGGTGTCCACAGAAGCCACATTGCCATGTTTAACAGGCTGTCTCTACATTGCCTTTGCTGTTCGATTGTaGAGGAAGTTGGGATGCAGA +
Preference number: 4 (lower is better)
Translates to: AVSTEATLPCLTGCLYIAFAVRL*RKLGCR
Trigger: TCTGCATCCCAACTTCCTCCACAATCGAACAGCAAA...GGCAATGTAGAGACAGCCTGTTAAACATGGCAATGTGGCTTCTGTGGACACCGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CCA 90 bp TCCTGTAAAGATCTGGGCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGGATACCTCTGTCTGAGCTTTTaGAATGCAGACTTAGAGAAA +
Preference number: 4 (lower is better)
Translates to: SCKDLGHADCQGWLQRGYLCLSF*NADLEK
Trigger: TTTCTCTAAGTCTGCATTCCAAAAGCTCAGACAGAG...GTATCCTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGCCCAGATCTTTACAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147171.8
CDS-3UTR CCA 90 bp GAAGATGGCCCCCAGGCTCAAAGACAAGGGACAGGTCACACTGGATGCTGTACATTCTCTTGTTTCTGGTaGTTAGTTCGATCCACTGTA +
Preference number: 4 (lower is better)
Translates to: EDGPQAQRQGTGHTGCCTFSCFW*LVRSTV
Trigger: TACAGTGGATCGAACTAACCACCAGAAACAAGAGAA...TGTACAGCATCCAGTGTGACCTGTCCCTTGTCTTTGAGCCTGGGGGCCATCTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000129221.8
CDS-3UTR CCA 90 bp GATACAAGGAAATGGTATGCTGTGAAAGAAGATGGCCCCCAGGCTCAAAGACAACGTAAGGACCTGGGTTaGTTTCAGCATCTGCCTGGT +
Preference number: 4 (lower is better)
Translates to: DTRKWYAVKEDGPQAQRQRKDLG*FQHLPG
Trigger: ACCAGGCAGATGCTGAAACCAACCCAGGTCCTTACG...TTGTCTTTGAGCCTGGGGGCCATCTTCTTTCACAGCATACCATTTCCTTGTATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000129954.8
3UTR CAA 72 bp CACTGTATTAGCCGTGGAGGGGTGTTCCCTAGTGTTTaGACGGATTCGAGCAGAGTTTTGCTGTTCGATTGT +
Preference number: 4 (lower is better)
Translates to: HCISRGGVFPSV*TDSSRVLLFDC
Trigger: ACAATCGAACAGCAAAACTCTGCTCGAATCCGTCAAAACACTAGGGAACACCCCTCCACGGCTAATACAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000105597.8
ENSMUST00000105601.9
ENSMUST00000123861.8
ENSMUST00000150374.8
CDS-3UTR TCA 90 bp CTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGAAACAACGTGGGACAAGTTaGGCCAGGAGCCAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: LEGTHFSTMRSYLFPLKKQRGTS*ARSQVL
Trigger: CAGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTG...TTTCTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR TCA 90 bp CATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGGGTTCTGCCAGAGCAAGGTTaGAAATGTAGATGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: HHQEEGSSFLCPCNSCRVLPEQG*KCRCWW
Trigger: CCACCAACATCTACATTTTCAACCTTGCTCTGGCAG...AACCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR TCA 90 bp CTATGCTGGCTAGTCACAGTTGAGGATAAACAGAACAGTGAGAGAGGGCTGTGGTCCAGTTGCAGACATTaGCAATTTTGGCATTTCGGG +
Preference number: 4 (lower is better)
Translates to: LCWLVTVEDKQNSERGLWSSCRH*QFWHFG
Trigger: CCCGAAATGCCAAAATTGTCAATGTCTGCAACTGGA...CCACAGCCCTCTCTCACTGTTCTGTTTATCCTCAACTGTGACTAGCCAGCATAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
CDS-3UTR TCA 90 bp GAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGGGTTTTTCAACATTGGGATGAGAGAACGTaGGGGTGCAATCTATGGACC +
Preference number: 4 (lower is better)
Translates to: EEGSSFLCPCNSCRVFQHWDERT*GCNLWT
Trigger: GGTCCATAGATTGCACCCTCACGTTCTCTCATCCCA...ATGTTGAAAAACCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000105601.9
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR TCA 90 bp TCTTCTGGTCATGAAGAGATGCCATTCAACAACCATTGGCATGGAATGTTCTCCTGGGATGAGAGAACGTaGGGGTGCAATCTATGGACC +
Preference number: 4 (lower is better)
Translates to: SSGHEEMPFNNHWHGMFSWDERT*GCNLWT
Trigger: GGTCCATAGATTGCACCCTCACGTTCTCTCATCCCA...GGAGAACATTCCATGCCAATGGTTGTTGAATGGCATCTCTTCATGACCAGAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105605.8
CDS-3UTR TCA 90 bp ATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGGGTTTTTCGCATGCGGACACTCTTaGGTCGTAAGATCATCAGTC +
Preference number: 4 (lower is better)
Translates to: IRKKVPHSSVHATLAGFFACGHS*VVRSSV
Trigger: GACTGATGATCTTACGACTCAAGAGTGTCCGCATGC...GAAAAACCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000105601.9
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR TCA 90 bp CATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGGGTTTTTGCATGCGGACACTCTTaGGTCGTAAGATCATCAGTC +
Preference number: 4 (lower is better)
Translates to: HQEEGSSFLCPCNSCRVFACGHS*VVRSSV
Trigger: GACTGATGATCTTACGACTCAAGAGTGTCCGCATGC...AAAAACCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000105601.9
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR TCA 90 bp GACCTCCTTAAGGATCTAAATCTTAGACTGGTATCAGGTGCTGTGTTTTTATATCCAGCACCATCCGGGTaGTCCTGCGCAGGTTCCTGT +
Preference number: 4 (lower is better)
Translates to: DLLKDLNLRLVSGAVFLYPAPSG*SCAGSC
Trigger: ACAGGAACCTGCGCAGGATCACCCGGATGGTGCTGG...ATATAAAAACACAGCACCTGATACCAGTCTAAGATTTAGATCCTTAAGGAGGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105602.8
CDS-3UTR TCA 90 bp AGGTACTCTGCTCTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGCCAGCACCATCCGGGTaGTCCTGCGCAGGTTCCTGT +
Preference number: 4 (lower is better)
Translates to: RYSALYGYICHMVTKYLWPAPSG*SCAGSC
Trigger: ACAGGAACCTGCGCAGGATCACCCGGATGGTGCTGG...CCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAGAGCAGAGTACCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR GCA 90 bp TCTGCTCTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTGAGCCAGGAGCCAGGTaGTGGGGAGCAACTTGCAGG +
Preference number: 4 (lower is better)
Translates to: SALYGYICHMVTKYLWCAEPGAR*WGATCR
Trigger: CCTGCAAGTTGCTCCCCAGCACCTGGCTCCTGGCTC...AGCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAGAGCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR GCA 90 bp ATTCCTGTCTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCCCTGTATTTTGTGGTTaGCATGAACATTACGGGCAG +
Preference number: 4 (lower is better)
Translates to: IPVLGHHQEEGSSFLCPCPVFCG*HEHYGQ
Trigger: CTGCCCGTAATGTTCATGGCAACCACAAAATACAGG...GCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGACAGGAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR GCA 90 bp TATCCTGTAAAGATCTGGGCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGGATTCTGAGCTTTTGGAATaGAGACTTAGAGAAAGCTTC +
Preference number: 4 (lower is better)
Translates to: YPVKIWATLTARVGFREDSELLE*RLRESF
Trigger: GAAGCTTTCTCTAAGTCTGCATTCCAAAAGCTCAGA...ATCCTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGCCCAGATCTTTACAGGATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147171.8
CDS-3UTR GCA 90 bp TGTCCATGCAACTCTTGCAGGGTTTTTCAACATGAGTCGGAGAAGGATATCCTGCATGCATGCACATGGTaGCTGGTGGTTAGTTCGATC +
Preference number: 4 (lower is better)
Translates to: CPCNSCRVFQHESEKDILHACTW*LVVSSI
Trigger: GATCGAACTAACCACCAGGCACCATGTGCATGCATG...CAGGATATCCTTCTCCGACTCATGTTGAAAAACCCTGCAAGAGTTGCATGGACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000129954.8
CDS-3UTR CCA 90 bp ATGGTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTGTGTATATGCCTTTTCCAGGAGCCAGGTGCTaGGGAGCAACTTGCAGGAGC +
Preference number: 4 (lower is better)
Translates to: MVTKYLWCASPSSVYMPFPGARC*GATCRS
Trigger: GCTCCTGCAAGTTGCTCCCCAGCACCTGGCTCCTGG...AAAAGGCATATACACAGAACTGGGAGAAGCACACCAAAGATATTTTGTTACCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092729.11
ENSMUST00000154906.8
CDS-3UTR CCA 90 bp CTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGAAACCGCATGGGTCGGACTaGTTGCCATCAACGTGGGAC +
Preference number: 4 (lower is better)
Translates to: LEGTHFSTMRSYLFPLKKPHGSD*LPSTWD
Trigger: GTCCCACGTTGATGGCAACCAGTCCGACCCATGCGG...TTTCTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR CCA 90 bp TCTCCAATTATCTTCCCTTCTACTCTCTGGCTGTGCAAGATCCACACTGACATGTTACGGGCAGACCAATaGCAGAAGAGAGGATCCAGT +
Preference number: 4 (lower is better)
Translates to: SPIIFPSTLWLCKIHTDMLRADQ*QKRGSS
Trigger: ACTGGATCCTCTCTTCTGCCATTGGTCTGCCCGTAA...CATGTCAGTGTGGATCTTGCACAGCCAGAGAGTAGAAGGGAAGATAATTGGAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
CDS-3UTR CCA 90 bp TTGTTTATTTGCACACAGTGGCATGAGAGCGGTGTCCACAGAAGCCACATTGCCTGCCAGGAAACAGTCTaGAAAGTGGTTTCTGGAATC +
Preference number: 4 (lower is better)
Translates to: LFICTQWHESGVHRSHIACQETV*KVVSGI
Trigger: GATTCCAGAAACCACTTTCCAGACTGTTTCCTGGCA...GGCAATGTGGCTTCTGTGGACACCGCTCTCATGCCACTGTGTGCAAATAAACAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CCA 90 bp TGCCATTCAACAACCATTGGCATGGAATGTTCTCCCACAAGCGGTTGCCACTGGGATTGTGGAGGAAGTTaGGATGCAGAACTCTCTAAA +
Preference number: 4 (lower is better)
Translates to: CHSTTIGMECSPTSGCHWDCGGS*DAELSK
Trigger: TTTAGAGAGTTCTGCATCCCAACTTCCTCCACAATC...CCAGTGGCAACCGCTTGTGGGAGAACATTCCATGCCAATGGTTGTTGAATGGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105605.8
CDS-3UTR CCA 90 bp GCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGGGGATTGTGGAGGAAGTTaGGATGCAGAACTCTCTAAA +
Preference number: 4 (lower is better)
Translates to: AIIRKKVPHSSVHATLAGDCGGS*DAELSK
Trigger: TTTAGAGAGTTCTGCATCCCAACTTCCTCCACAATC...CCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR CCA 90 bp AAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGGGTTTTTCAACATGAGTGTTTCAGCATCTGCCTaGTGGCTCCCAACTGTCTTC +
Preference number: 4 (lower is better)
Translates to: KVPHSSVHATLAGFFNMSVSASA*WLPTVF
Trigger: GAAGACAGTTGGGAGCCACCAGGCAGATGCTGAAAC...ACTCATGTTGAAAAACCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000129954.8
CDS-3UTR CCA 90 bp TGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCACCAAAAGCAAGCTGGTaGTTAGTTCGATCCACTGTA +
Preference number: 4 (lower is better)
Translates to: WAIIRKKVPHSSVHATLAPKASW*LVRSTV
Trigger: TACAGTGGATCGAACTAACCACCAGCTTGCTTTTGG...TGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144264.8
CDS-3UTR TCA 90 bp GACCTCCTTAAGGATCTAAATCTTAGACTGGTATCAGGTGCTGTGTTTTTATATCAACGTGGGACAAGTTaGGCCAGGAGCCAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: DLLKDLNLRLVSGAVFLYQRGTS*ARSQVL
Trigger: CAGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTG...ATATAAAAACACAGCACCTGATACCAGTCTAAGATTTAGATCCTTAAGGAGGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105602.8
CDS-3UTR TCA 90 bp TCTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTTCTCCCAACGTGGGACAAGTTaGGCCAGGAGCCAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: SLWLHLPYGNKISLVCFSQRGTS*ARSQVL
Trigger: CAGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTG...GGAGAAGCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR TCA 90 bp AAGAAACAGTGTCATAACAAATACTGGCTTTCTTCCTCTTCTGTGACATTAGGACAACGTGGGACAAGTTaGGCCAGGAGCCAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: KKQCHNKYWLSSSSVTLGQRGTS*ARSQVL
Trigger: CAGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTG...TCCTAATGTCACAGAAGAGGAAGAAAGCCAGTATTTGTTATGACACTGTTTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105611.8
CDS-3UTR TCA 90 bp TGCTCTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTTCCAACGTGGGACAAGTTaGGCCAGGAGCCAGGTGCTG +
Preference number: 4 (lower is better)
Translates to: CSLWLHLPYGNKISLVCFQRGTS*ARSQVL
Trigger: CAGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTG...GAAGCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAGAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR TCA 90 bp TCTCCAATTATCTTCCCTTCTACTCTCTGGCTGTGCAAGATCCACACTGACATGCTGCCAGAGCAAGGTTaGAAATGTAGATGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: SPIIFPSTLWLCKIHTDMLPEQG*KCRCWW
Trigger: CCACCAACATCTACATTTTCAACCTTGCTCTGGCAG...CATGTCAGTGTGGATCTTGCACAGCCAGAGAGTAGAAGGGAAGATAATTGGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
CDS-3UTR TCA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCTGGGATGAGAGAACGTaGGGGTGCAATCTATGGACC +
Preference number: 4 (lower is better)
Translates to: GRHENILTPPTILLTDLIWDERT*GCNLWT
Trigger: GGTCCATAGATTGCACCCTCACGTTCTCTCATCCCA...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR TCA 90 bp CATGCAACTCTTGCAGGGTTTTTCAACATGAGTCGGAGAAGGATATCCTGTAAATGGGATGAGAGAACGTaGGGGTGCAATCTATGGACC +
Preference number: 4 (lower is better)
Translates to: HATLAGFFNMSRRRISCKWDERT*GCNLWT
Trigger: GGTCCATAGATTGCACCCTCACGTTCTCTCATCCCA...TTTACAGGATATCCTTCTCCGACTCATGTTGAAAAACCCTGCAAGAGTTGCATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR TCA 90 bp TTCTCTAGTAAGCTCTCTATTTGTTTTGTATTTCAGTGTTCAGGAAACCTTGTCCCAGCACCATCCGGGTaGTCCTGCGCAGGTTCCTGT +
Preference number: 4 (lower is better)
Translates to: FSSKLSICFVFQCSGNLVPAPSG*SCAGSC
Trigger: ACAGGAACCTGCGCAGGATCACCCGGATGGTGCTGG...GACAAGGTTTCCTGAACACTGAAATACAAAACAAATAGAGAGCTTACTAGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105604.8
CDS-3UTR TCA 90 bp CTGTATTTTGTGGTTGCCATGAACATTACGGGCAGACCAATGGCAGAAGAGAGGTTCCATCTCTCTGTCTaGGCTTTTGGAATGCAGACT +
Preference number: 4 (lower is better)
Translates to: LYFVVAMNITGRPMAEERFHLSV*AFGMQT
Trigger: AGTCTGCATTCCAAAAGCTCAGACAGAGAGATGGAA...CCTCTCTTCTGCCATTGGTCTGCCCGTAATGTTCATGGCAACCACAAAATACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
CDS-3UTR TCA 90 bp GTCATTTGGACCAATGGAGAGATGGAAGTCTGGGGAGATACAGAGGCAATTCCATTCCATCTCTCTGTCTaGGCTTTTGGAATGCAGACT +
Preference number: 4 (lower is better)
Translates to: VIWTNGEMEVWGDTEAIPFHLSV*AFGMQT
Trigger: AGTCTGCATTCCAAAAGCTCAGACAGAGAGATGGAA...TGGAATTGCCTCTGTATCTCCCCAGACTTCCATCTCTCCATTGGTCCAAATGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
CDS-3UTR TCA 90 bp TGCACACAGTGGCATGAGAGCGGTGTCCACAGAAGCCACATTGCCATGTTTAACTCATTTTGGTATATCTaGGGTAACTCTTCCCCTCTT +
Preference number: 4 (lower is better)
Translates to: CTQWHESGVHRSHIAMFNSFWYI*GNSSPL
Trigger: AAGAGGGGAAGAGTTACCTCAGATATACCAAAATGA...GTTAAACATGGCAATGTGGCTTCTGTGGACACCGCTCTCATGCCACTGTGTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063036.14
CDS-3UTR TCA 90 bp CTACTTACAATCACATACATGACCAGGAAGTTTCCAAAGAGGCCCACTACACACTCGGTAGGCTGTAACTaGGAGCACTCAAGAGTGTTC +
Preference number: 4 (lower is better)
Translates to: LLTITYMTRKFPKRPTTHSVGCN*EHSRVF
Trigger: GAACACTCTTGAGTGCTCTCAGTTACAGCCTACCGA...GTGTGTAGTGGGCCTCTTTGGAAACTTCCTGGTCATGTATGTGATTGTAAGTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
CDS-3UTR GCA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCATGGGTCGGACTGGTTaGCATCAACGTGGGACAAGT +
Preference number: 4 (lower is better)
Translates to: GRHENILTPPTILLTDLIMGRTG*HQRGTS
Trigger: ACTTGTCCCACGTTGATGGCAACCAGTCCGACCCAT...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR GCA 90 bp TCTCTACATTGCCAAGTCATTCGTATGAAAACACGCAATACGGCAAACCAGACAATGGGTCGGACTGGTTaGCATCAACGTGGGACAAGT +
Preference number: 4 (lower is better)
Translates to: SLHCQVIRMKTRNTANQTMGRTG*HQRGTS
Trigger: ACTTGTCCCACGTTGATGGCAACCAGTCCGACCCAT...TGTCTGGTTTGCCGTATTGCGTGTTTTCATACGAATGACTTGGCAATGTAGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105611.8
ENSMUST00000144264.8
CDS-3UTR CCA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCTGGTTGCCATCAACGTaGGACAAGTTGAGCCAGGAG +
Preference number: 4 (lower is better)
Translates to: GRHENILTPPTILLTDLIWLPST*DKLSQE
Trigger: CTCCTGGCTCAACTTGTCCCACGTTGATGGCAACCA...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR CCA 90 bp TCTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTTCTCCCCGCATGGGTCGGACTaGTTGCCATCAACGTGGGAC +
Preference number: 4 (lower is better)
Translates to: SLWLHLPYGNKISLVCFSPHGSD*LPSTWD
Trigger: GTCCCACGTTGATGGCAACCAGTCCGACCCATGCGG...GGAGAAGCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CCA 90 bp GACCTCCTTAAGGATCTAAATCTTAGACTGGTATCAGGTGCTGTGTTTTTATATCCGCATGGGTCGGACTaGTTGCCATCAACGTGGGAC +
Preference number: 4 (lower is better)
Translates to: DLLKDLNLRLVSGAVFLYPHGSD*LPSTWD
Trigger: GTCCCACGTTGATGGCAACCAGTCCGACCCATGCGG...ATATAAAAACACAGCACCTGATACCAGTCTAAGATTTAGATCCTTAAGGAGGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105602.8
CDS-3UTR CCA 90 bp TGCTCTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTTCCCGCATGGGTCGGACTaGTTGCCATCAACGTGGGAC +
Preference number: 4 (lower is better)
Translates to: CSLWLHLPYGNKISLVCFPHGSD*LPSTWD
Trigger: GTCCCACGTTGATGGCAACCAGTCCGACCCATGCGG...GAAGCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAGAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CCA 90 bp ATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTGTGTATCCGCATGGGTCGGACTaGTTGCCATCAACGTGGGAC +
Preference number: 4 (lower is better)
Translates to: ICHMVTKYLWCASPSSVYPHGSD*LPSTWD
Trigger: GTCCCACGTTGATGGCAACCAGTCCGACCCATGCGG...ATACACAGAACTGGGAGAAGCACACCAAAGATATTTTGTTACCATATGGCAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CCA 90 bp TCTTCTGGTCATGAAGAGATGCCATTCAACAACCATTGGCATGGAATGTTCTCCTTACGGGCAGACCAATaGCAGAAGAGAGGATCCAGT +
Preference number: 4 (lower is better)
Translates to: SSGHEEMPFNNHWHGMFSLRADQ*QKRGSS
Trigger: ACTGGATCCTCTCTTCTGCCATTGGTCTGCCCGTAA...GGAGAACATTCCATGCCAATGGTTGTTGAATGGCATCTCTTCATGACCAGAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105605.8
CDS-3UTR CCA 90 bp GGTGTCCACAGAAGCCACATTGCCATGTTTAACAGGCTGTCTCTACATTGCCAATGCCAGGAAACAGTCTaGAAAGTGGTTTCTGGAATC +
Preference number: 4 (lower is better)
Translates to: GVHRSHIAMFNRLSLHCQCQETV*KVVSGI
Trigger: GATTCCAGAAACCACTTTCCAGACTGTTTCCTGGCA...TTGGCAATGTAGAGACAGCCTGTTAAACATGGCAATGTGGCTTCTGTGGACACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CCA 90 bp GCTATGTTTAAAACAGGGATGTGCTGGAATAGAGAGCTTGGGGCTCTGCTTCCAGAACGCATAAAGAACTaGGTTCAGGCAGCTGTTTGT +
Preference number: 4 (lower is better)
Translates to: AMFKTGMCWNRELGALLPERIKN*VQAAVC
Trigger: ACAAACAGCTGCCTGAACCCAGTTCTTTATGCGTTC...TGGAAGCAGAGCCCCAAGCTCTCTATTCCAGCACATCCCTGTTTTAAACATAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
CDS-3UTR CCA 90 bp TTTATGAGTGAAAGGCATCTTCCCTCTCGCTGTCTTCTAGCAGAGCCTGCACCTGATTGTGGAGGAAGTTaGGATGCAGAACTCTCTAAA +
Preference number: 4 (lower is better)
Translates to: FMSERHLPSRCLLAEPAPDCGGS*DAELSK
Trigger: TTTAGAGAGTTCTGCATCCCAACTTCCTCCACAATC...AGGTGCAGGCTCTGCTAGAAGACAGCGAGAGGGAAGATGCCTTTCACTCATAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CCA 90 bp GGGTTTTTCAACATGAGTCGGAGAAGGATATCCTGTAAAGATCTGGGCCACGCTTTTGCTGTTCGATTGTaGAGGAAGTTGGGATGCAGA +
Preference number: 4 (lower is better)
Translates to: GFFNMSRRRISCKDLGHAFAVRL*RKLGCR
Trigger: TCTGCATCCCAACTTCCTCCACAATCGAACAGCAAA...AGCGTGGCCCAGATCTTTACAGGATATCCTTCTCCGACTCATGTTGAAAAACCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR CCA 90 bp GCGTGGGACCCAGTTAGGGCAATGGAGCAGTTTCTGCTTCCAGATTTTCTAGCTCTCTGTCTGAGCTTTTaGAATGCAGACTTAGAGAAA +
Preference number: 4 (lower is better)
Translates to: AWDPVRAMEQFLLPDFLALCLSF*NADLEK
Trigger: TTTCTCTAAGTCTGCATTCCAAAAGCTCAGACAGAG...AGCTAGAAAATCTGGAAGCAGAAACTGCTCCATTGCCCTAACTGGGTCCCACGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
CDS-3UTR CCA 90 bp TCATGTAAGGTGACTAGGTGCTTCCTAAGGAAGTTCCTTGTTTATTTGCACACAGCTGACTGCCAGGGTTaGCTGGTGGTTAGTTCGATC +
Preference number: 4 (lower is better)
Translates to: SCKVTRCFLRKFLVYLHTADCQG*LVVSSI
Trigger: GATCGAACTAACCACCAGCCAACCCTGGCAGTCAGC...TGTGTGCAAATAAACAAGGAACTTCCTTAGGAAGCACCTAGTCACCTTACATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105611.8
3UTR CAA 72 bp GTGTTCCCTAGTGTTTTGACGGATTCGAGCAGAGTTTaGCTGTTCGATTGTGGAGGAAGTTGGGATGCAGAA +
Preference number: 4 (lower is better)
Translates to: VFPSVLTDSSRV*LFDCGGSWDAE
Trigger: TTCTGCATCCCAACTTCCTCCACAATCGAACAGCAAAACTCTGCTCGAATCCGTCAAAACACTAGGGAACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000105597.8
ENSMUST00000105601.9
ENSMUST00000123861.8
ENSMUST00000150374.8
CDS-3UTR TCA 90 bp TTATCTTCCCTTCTACTCTCTGGCTGTGCAAGATCCACACTGACATGCAAACACTCCAGTTGCAGACATTaGCAATTTTGGCATTTCGGG +
Preference number: 4 (lower is better)
Translates to: LSSLLLSGCARSTLTCKHSSCRH*QFWHFG
Trigger: CCCGAAATGCCAAAATTGTCAATGTCTGCAACTGGA...GTGTTTGCATGTCAGTGTGGATCTTGCACAGCCAGAGAGTAGAAGGGAAGATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
CDS-3UTR TCA 90 bp TCTACATTGCCAAGTCATTCGTATGAAAACACGCAATACGGCAAACCAGACAATTGGGATGAGAGAACGTaGGGGTGCAATCTATGGACC +
Preference number: 4 (lower is better)
Translates to: STLPSHSYENTQYGKPDNWDERT*GCNLWT
Trigger: GGTCCATAGATTGCACCCTCACGTTCTCTCATCCCA...ATTGTCTGGTTTGCCGTATTGCGTGTTTTCATACGAATGACTTGGCAATGTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR TCA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCGCATGCGGACACTCTTaGGTCGTAAGATCATCAGTC +
Preference number: 4 (lower is better)
Translates to: GRHENILTPPTILLTDLIACGHS*VVRSSV
Trigger: GACTGATGATCTTACGACTCAAGAGTGTCCGCATGC...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR GCA 90 bp CATAGGGAAGGGTCACCTTCTATGTTGATCACAATTCACATACCACAGAGTATTATGGGTCGGACTGGTTaGCATCAACGTGGGACAAGT +
Preference number: 4 (lower is better)
Translates to: HREGSPSMLITIHIPQSIMGRTG*HQRGTS
Trigger: ACTTGTCCCACGTTGATGGCAACCAGTCCGACCCAT...AATACTCTGTGGTATGTGAATTGTGATCAACATAGAAGGTGACCCTTCCCTATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000152674.2
CDS-3UTR GCA 90 bp GTCCATGCAACTCTTGCAGGGTTTTTCAACATGAGTCGGAGAAGGATATCCTGTCCTGTATTTTGTGGTTaGCATGAACATTACGGGCAG +
Preference number: 4 (lower is better)
Translates to: VHATLAGFFNMSRRRISCPVFCG*HEHYGQ
Trigger: CTGCCCGTAATGTTCATGGCAACCACAAAATACAGG...ACAGGATATCCTTCTCCGACTCATGTTGAAAAACCCTGCAAGAGTTGCATGGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR GCA 90 bp CAGGCTGTCTCTACATTGCCAAGTCATTCGTATGAAAACACGCAATACGGCAAACAATCTATGGACCCCTaGCTGTATTTTGTGGTTGCC +
Preference number: 4 (lower is better)
Translates to: QAVSTLPSHSYENTQYGKQSMDP*LYFVVA
Trigger: GGCAACCACAAAATACAGGCAGGGGTCCATAGATTG...TTTGCCGTATTGCGTGTTTTCATACGAATGACTTGGCAATGTAGAGACAGCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR GCA 90 bp TCTCTGCTCCAGTTTCTGCTTGTAGGTTTGTGTCTTGAGTTCCTTCTTTGGCTTCAATCTATGGACCCCTaGCTGTATTTTGTGGTTGCC +
Preference number: 4 (lower is better)
Translates to: SLLQFLLVGLCLEFLLWLQSMDP*LYFVVA
Trigger: GGCAACCACAAAATACAGGCAGGGGTCCATAGATTG...AAGCCAAAGAAGGAACTCAAGACACAAACCTACAAGCAGAAACTGGAGCAGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR GCA 90 bp TTTATGAGTGAAAGGCATCTTCCCTCTCGCTGTCTTCTAGCAGAGCCTGCACCTTCTGAGCTTTTGGAATaGAGACTTAGAGAAAGCTTC +
Preference number: 4 (lower is better)
Translates to: FMSERHLPSRCLLAEPAPSELLE*RLRESF
Trigger: GAAGCTTTCTCTAAGTCTGCATTCCAAAAGCTCAGA...AGGTGCAGGCTCTGCTAGAAGACAGCGAGAGGGAAGATGCCTTTCACTCATAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063036.14
CDS-3UTR GCA 90 bp TGTATTAGCCGTGGAGGGGTGTTCCCTAGTGTTTTGACGGATTCGAGCAGAGTTTCTGAGCTTTTGGAATaGAGACTTAGAGAAAGCTTC +
Preference number: 4 (lower is better)
Translates to: CISRGGVFPSVLTDSSRVSELLE*RLRESF
Trigger: GAAGCTTTCTCTAAGTCTGCATTCCAAAAGCTCAGA...AACTCTGCTCGAATCCGTCAAAACACTAGGGAACACCCCTCCACGGCTAATACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
CDS-3UTR CCA 90 bp CCATATGGTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTGTGTATATGCCTGGTTGCCATCAACGTaGGACAAGTTGAGCCAGGAG +
Preference number: 4 (lower is better)
Translates to: PYGNKISLVCFSQFCVYAWLPST*DKLSQE
Trigger: CTCCTGGCTCAACTTGTCCCACGTTGATGGCAACCA...GGCATATACACAGAACTGGGAGAAGCACACCAAAGATATTTTGTTACCATATGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CCA 90 bp AAATTTAAATCCTTACTCTTTCAAAGTGATGGGCAAGAGTTTGAAAGCCCCTTACCGCATGGGTCGGACTaGTTGCCATCAACGTGGGAC +
Preference number: 4 (lower is better)
Translates to: KFKSLLFQSDGQEFESPLPHGSD*LPSTWD
Trigger: GTCCCACGTTGATGGCAACCAGTCCGACCCATGCGG...TAAGGGGCTTTCAAACTCTTGCCCATCACTTTGAAAGAGTAAGGATTTAAATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
CDS-3UTR CCA 90 bp TTCTCTAGTAAGCTCTCTATTTGTTTTGTATTTCAGTGTTCAGGAAACCTTGTCCCGCATGGGTCGGACTaGTTGCCATCAACGTGGGAC +
Preference number: 4 (lower is better)
Translates to: FSSKLSICFVFQCSGNLVPHGSD*LPSTWD
Trigger: GTCCCACGTTGATGGCAACCAGTCCGACCCATGCGG...GACAAGGTTTCCTGAACACTGAAATACAAAACAAATAGAGAGCTTACTAGAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105604.8
CDS-3UTR CCA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCTTACGGGCAGACCAATaGCAGAAGAGAGGATCCAGT +
Preference number: 4 (lower is better)
Translates to: GRHENILTPPTILLTDLILRADQ*QKRGSS
Trigger: ACTGGATCCTCTCTTCTGCCATTGGTCTGCCCGTAA...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR CCA 90 bp TTTAAAACAGGGATGTGCTGGAATAGAGAGCTTGGGGCTCTGCTTCCATTAGAGTGCCAGGAAACAGTCTaGAAAGTGGTTTCTGGAATC +
Preference number: 4 (lower is better)
Translates to: FKTGMCWNRELGALLPLECQETV*KVVSGI
Trigger: GATTCCAGAAACCACTTTCCAGACTGTTTCCTGGCA...CTCTAATGGAAGCAGAGCCCCAAGCTCTCTATTCCAGCACATCCCTGTTTTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
CDS-3UTR CCA 90 bp ATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGGGTTTTTCTGCCAGGAAACAGTCTaGAAAGTGGTTTCTGGAATC +
Preference number: 4 (lower is better)
Translates to: IRKKVPHSSVHATLAGFFCQETV*KVVSGI
Trigger: GATTCCAGAAACCACTTTCCAGACTGTTTCCTGGCA...GAAAAACCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000105601.9
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR CCA 90 bp GATACAAGGAAATGGTATGCTGTGAAAGAAGATGGCCCCCAGGCTCAAAGACAATGCCAGGAAACAGTCTaGAAAGTGGTTTCTGGAATC +
Preference number: 4 (lower is better)
Translates to: DTRKWYAVKEDGPQAQRQCQETV*KVVSGI
Trigger: GATTCCAGAAACCACTTTCCAGACTGTTTCCTGGCA...TTGTCTTTGAGCCTGGGGGCCATCTTCTTTCACAGCATACCATTTCCTTGTATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR CCA 90 bp TCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGGGTTTTTGCCAGGAAACAGTCTaGAAAGTGGTTTCTGGAATC +
Preference number: 4 (lower is better)
Translates to: SSGRRFLIPLSMQLLQGFCQETV*KVVSGI
Trigger: GATTCCAGAAACCACTTTCCAGACTGTTTCCTGGCA...AAAACCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000105601.9
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR CCA 90 bp TTCCTGTCTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAGTTTTCTCTTGTTTCTaGTGGTTAGTTCGATCCACT +
Preference number: 4 (lower is better)
Translates to: FLSWAIIRKKVPHSSVHAVFSCF*WLVRST
Trigger: AGTGGATCGAACTAACCACCAGAAACAAGAGAAAAC...TGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGACAGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129221.8
3UTR CAA 72 bp CTGACGTGTAGCGTGAATAGCCAGAGAGGAATGACTTaGAATGATGCAGGATCAGATGCTTTTCCAGGAAAC +
Preference number: 4 (lower is better)
Translates to: LTCSVNSQRGMT*NDAGSDAFPGN
Trigger: GTTTCCTGGAAAAGCATCTGATCCTGCATCATTCAAAGTCATTCCTCTCTGGCTATTCACGCTACACGTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105607.8
ENSMUST00000147171.8
ENSMUST00000152674.2
CDS-3UTR TCA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCCTGCCAGAGCAAGGTTaGAAATGTAGATGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: GRHENILTPPTILLTDLILPEQG*KCRCWW
Trigger: CCACCAACATCTACATTTTCAACCTTGCTCTGGCAG...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR TCA 90 bp GACTCTGAGTTTGACCTTGTGAACACTTGGAGGACATGGAAAGAATTGGTAAGACTGCCAGAGCAAGGTTaGAAATGTAGATGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: DSEFDLVNTWRTWKELVRLPEQG*KCRCWW
Trigger: CCACCAACATCTACATTTTCAACCTTGCTCTGGCAG...TCTTACCAATTCTTTCCATGTCCTCCAAGTGTTCACAAGGTCAAACTCAGAGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105607.8
CDS-3UTR TCA 90 bp CAGGCTGTCTCTACATTGCCAAGTCATTCGTATGAAAACACGCAATACGGCAAATCCAGTTGCAGACATTaGCAATTTTGGCATTTCGGG +
Preference number: 4 (lower is better)
Translates to: QAVSTLPSHSYENTQYGKSSCRH*QFWHFG
Trigger: CCCGAAATGCCAAAATTGTCAATGTCTGCAACTGGA...TTTGCCGTATTGCGTGTTTTCATACGAATGACTTGGCAATGTAGAGACAGCCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR TCA 90 bp TCTTCTGGTCATGAAGAGATGCCATTCAACAACCATTGGCATGGAATGTTCTCCTCCAGTTGCAGACATTaGCAATTTTGGCATTTCGGG +
Preference number: 4 (lower is better)
Translates to: SSGHEEMPFNNHWHGMFSSSCRH*QFWHFG
Trigger: CCCGAAATGCCAAAATTGTCAATGTCTGCAACTGGA...GGAGAACATTCCATGCCAATGGTTGTTGAATGGCATCTCTTCATGACCAGAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105605.8
CDS-3UTR TCA 90 bp CTGTCTCTACATTGCCAAGTCATTCGTATGAAAACACGCAATACGGCAAACCAGTCCAGTTGCAGACATTaGCAATTTTGGCATTTCGGG +
Preference number: 4 (lower is better)
Translates to: LSLHCQVIRMKTRNTANQSSCRH*QFWHFG
Trigger: CCCGAAATGCCAAAATTGTCAATGTCTGCAACTGGA...CTGGTTTGCCGTATTGCGTGTTTTCATACGAATGACTTGGCAATGTAGAGACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR TCA 90 bp TATCTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGTGGGATGAGAGAACGTaGGGGTGCAATCTATGGACC +
Preference number: 4 (lower is better)
Translates to: YLEGTHFSTMRSYLFPLKWDERT*GCNLWT
Trigger: GGTCCATAGATTGCACCCTCACGTTCTCTCATCCCA...CTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAGATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR TCA 90 bp GGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTTGGGATGAGAGAACGTaGGGGTGCAATCTATGGACC +
Preference number: 4 (lower is better)
Translates to: GYICHMVTKYLWCASPSSWDERT*GCNLWT
Trigger: GGTCCATAGATTGCACCCTCACGTTCTCTCATCCCA...AGAACTGGGAGAAGCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR TCA 90 bp GTTGATCACAATTCACATACCACAGAGTATTGTGGTCCATTGGATGTTTCTGTATGGGATGAGAGAACGTaGGGGTGCAATCTATGGACC +
Preference number: 4 (lower is better)
Translates to: VDHNSHTTEYCGPLDVSVWDERT*GCNLWT
Trigger: GGTCCATAGATTGCACCCTCACGTTCTCTCATCCCA...TACAGAAACATCCAATGGACCACAATACTCTGTGGTATGTGAATTGTGATCAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105607.8
CDS-3UTR TCA 90 bp CCAGGAAACAGTCTGGAAAGTGGTTTCTGGAATCGTGATCAGTGCTTTGATGATTTCCATCTCTCTGTCTaGGCTTTTGGAATGCAGACT +
Preference number: 4 (lower is better)
Translates to: PGNSLESGFWNRDQCFDDFHLSV*AFGMQT
Trigger: AGTCTGCATTCCAAAAGCTCAGACAGAGAGATGGAA...ATCATCAAAGCACTGATCACGATTCCAGAAACCACTTTCCAGACTGTTTCCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
CDS-3UTR GCA 90 bp CTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGAAAATGGGTCGGACTGGTTaGCATCAACGTGGGACAAGT +
Preference number: 4 (lower is better)
Translates to: LEGTHFSTMRSYLFPLKKMGRTG*HQRGTS
Trigger: ACTTGTCCCACGTTGATGGCAACCAGTCCGACCCAT...TTTCTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR GCA 90 bp GTTGATCACAATTCACATACCACAGAGTATTGTGGTCCATTGGATGTTTCTGTAATGGGTCGGACTGGTTaGCATCAACGTGGGACAAGT +
Preference number: 4 (lower is better)
Translates to: VDHNSHTTEYCGPLDVSVMGRTG*HQRGTS
Trigger: ACTTGTCCCACGTTGATGGCAACCAGTCCGACCCAT...TACAGAAACATCCAATGGACCACAATACTCTGTGGTATGTGAATTGTGATCAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000152674.2
CDS-3UTR GCA 90 bp CTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTTCTCCCATGGGTCGGACTGGTTaGCATCAACGTGGGACAAGT +
Preference number: 4 (lower is better)
Translates to: LYGYICHMVTKYLWCASPMGRTG*HQRGTS
Trigger: ACTTGTCCCACGTTGATGGCAACCAGTCCGACCCAT...GGGAGAAGCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR GCA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCCAATCTATGGACCCCTaGCTGTATTTTGTGGTTGCC +
Preference number: 4 (lower is better)
Translates to: GRHENILTPPTILLTDLIQSMDP*LYFVVA
Trigger: GGCAACCACAAAATACAGGCAGGGGTCCATAGATTG...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR GCA 90 bp AGCGTGAATAGCCAGAGAGGAATGACTTTGAATGATGCAGGATCAGATGCTTTTCAATCTATGGACCCCTaGCTGTATTTTGTGGTTGCC +
Preference number: 4 (lower is better)
Translates to: SVNSQRGMTLNDAGSDAFQSMDP*LYFVVA
Trigger: GGCAACCACAAAATACAGGCAGGGGTCCATAGATTG...AAAAGCATCTGATCCTGCATCATTCAAAGTCATTCCTCTCTGGCTATTCACGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000147171.8
CDS-3UTR CCA 90 bp TATCTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGTGGTTGCCATCAACGTaGGACAAGTTGAGCCAGGAG +
Preference number: 4 (lower is better)
Translates to: YLEGTHFSTMRSYLFPLKWLPST*DKLSQE
Trigger: CTCCTGGCTCAACTTGTCCCACGTTGATGGCAACCA...CTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAGATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR CCA 90 bp CTTCCTCATAATTATAGCCAGAAAGCGGTAGGCTTCAAACAAAGCAAAACAAACTGGTTGCCATCAACGTaGGACAAGTTGAGCCAGGAG +
Preference number: 4 (lower is better)
Translates to: LPHNYSQKAVGFKQSKTNWLPST*DKLSQE
Trigger: CTCCTGGCTCAACTTGTCCCACGTTGATGGCAACCA...GTTTGTTTTGCTTTGTTTGAAGCCTACCGCTTTCTGGCTATAATTATGAGGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154906.8
CDS-3UTR CCA 90 bp AAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGGGTTTTTCAACATGAGTGAACGCATAAAGAACTaGGTTCAGGCAGCTGTTTGT +
Preference number: 4 (lower is better)
Translates to: KVPHSSVHATLAGFFNMSERIKN*VQAAVC
Trigger: ACAAACAGCTGCCTGAACCCAGTTCTTTATGCGTTC...ACTCATGTTGAAAAACCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000105601.9
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR CCA 90 bp TTATCTTCCCTTCTACTCTCTGGCTGTGCAAGATCCACACTGACATGCAAACACGATTGTGGAGGAAGTTaGGATGCAGAACTCTCTAAA +
Preference number: 4 (lower is better)
Translates to: LSSLLLSGCARSTLTCKHDCGGS*DAELSK
Trigger: TTTAGAGAGTTCTGCATCCCAACTTCCTCCACAATC...GTGTTTGCATGTCAGTGTGGATCTTGCACAGCCAGAGAGTAGAAGGGAAGATAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
CDS-3UTR CCA 90 bp GTCCATGCAACTCTTGCAGGGTTTTTCAACATGAGTCGGAGAAGGATATCCTGTGATTGTGGAGGAAGTTaGGATGCAGAACTCTCTAAA +
Preference number: 4 (lower is better)
Translates to: VHATLAGFFNMSRRRISCDCGGS*DAELSK
Trigger: TTTAGAGAGTTCTGCATCCCAACTTCCTCCACAATC...ACAGGATATCCTTCTCCGACTCATGTTGAAAAACCCTGCAAGAGTTGCATGGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR TCA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCTCCAGTTGCAGACATTaGCAATTTTGGCATTTCGGG +
Preference number: 4 (lower is better)
Translates to: GRHENILTPPTILLTDLISSCRH*QFWHFG
Trigger: CCCGAAATGCCAAAATTGTCAATGTCTGCAACTGGA...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR TCA 90 bp GACCTCCTTAAGGATCTAAATCTTAGACTGGTATCAGGTGCTGTGTTTTTATATTGGGATGAGAGAACGTaGGGGTGCAATCTATGGACC +
Preference number: 4 (lower is better)
Translates to: DLLKDLNLRLVSGAVFLYWDERT*GCNLWT
Trigger: GGTCCATAGATTGCACCCTCACGTTCTCTCATCCCA...ATATAAAAACACAGCACCTGATACCAGTCTAAGATTTAGATCCTTAAGGAGGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105602.8
CDS-3UTR TCA 90 bp TATCTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGGCATGCGGACACTCTTaGGTCGTAAGATCATCAGTC +
Preference number: 4 (lower is better)
Translates to: YLEGTHFSTMRSYLFPLKACGHS*VVRSSV
Trigger: GACTGATGATCTTACGACTCAAGAGTGTCCGCATGC...CTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAGATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR TCA 90 bp CTCTGCTCTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCGCATGCGGACACTCTTaGGTCGTAAGATCATCAGTC +
Preference number: 4 (lower is better)
Translates to: LCSLWLHLPYGNKISLVCACGHS*VVRSSV
Trigger: GACTGATGATCTTACGACTCAAGAGTGTCCGCATGC...GCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAGAGCAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR TCA 90 bp GTTGATCACAATTCACATACCACAGAGTATTGTGGTCCATTGGATGTTTCTGTAGCATGCGGACACTCTTaGGTCGTAAGATCATCAGTC +
Preference number: 4 (lower is better)
Translates to: VDHNSHTTEYCGPLDVSVACGHS*VVRSSV
Trigger: GACTGATGATCTTACGACTCAAGAGTGTCCGCATGC...TACAGAAACATCCAATGGACCACAATACTCTGTGGTATGTGAATTGTGATCAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105607.8
CDS-3UTR GCA 90 bp AGGTACTCTGCTCTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGATGGGTCGGACTGGTTaGCATCAACGTGGGACAAGT +
Preference number: 4 (lower is better)
Translates to: RYSALYGYICHMVTKYLWMGRTG*HQRGTS
Trigger: ACTTGTCCCACGTTGATGGCAACCAGTCCGACCCAT...CCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAGAGCAGAGTACCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR GCA 90 bp GACCTCCTTAAGGATCTAAATCTTAGACTGGTATCAGGTGCTGTGTTTTTATATATGGGTCGGACTGGTTaGCATCAACGTGGGACAAGT +
Preference number: 4 (lower is better)
Translates to: DLLKDLNLRLVSGAVFLYMGRTG*HQRGTS
Trigger: ACTTGTCCCACGTTGATGGCAACCAGTCCGACCCAT...ATATAAAAACACAGCACCTGATACCAGTCTAAGATTTAGATCCTTAAGGAGGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105602.8
CDS-3UTR GCA 90 bp AGCGTTAGAGAATCTGAAGGGCAGCTATGTTTAAAACAGGGATGTGCTGGAATACCTGTATTTTGTGGTTaGCATGAACATTACGGGCAG +
Preference number: 4 (lower is better)
Translates to: SVRESEGQLCLKQGCAGIPVFCG*HEHYGQ
Trigger: CTGCCCGTAATGTTCATGGCAACCACAAAATACAGG...TATTCCAGCACATCCCTGTTTTAAACATAGCTGCCCTTCAGATTCTCTAACGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
CDS-3UTR GCA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCCCTGTATTTTGTGGTTaGCATGAACATTACGGGCAG +
Preference number: 4 (lower is better)
Translates to: GRHENILTPPTILLTDLIPVFCG*HEHYGQ
Trigger: CTGCCCGTAATGTTCATGGCAACCACAAAATACAGG...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR GCA 90 bp GACTCTGAGTTTGACCTTGTGAACACTTGGAGGACATGGAAAGAATTGGTAAGACCTGTATTTTGTGGTTaGCATGAACATTACGGGCAG +
Preference number: 4 (lower is better)
Translates to: DSEFDLVNTWRTWKELVRPVFCG*HEHYGQ
Trigger: CTGCCCGTAATGTTCATGGCAACCACAAAATACAGG...TCTTACCAATTCTTTCCATGTCCTCCAAGTGTTCACAAGGTCAAACTCAGAGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105607.8
CDS-3UTR GCA 90 bp CATGCAACTCTTGCAGGGTTTTTCAACATGAGTCGGAGAAGGATATCCTGTAAACCTGTATTTTGTGGTTaGCATGAACATTACGGGCAG +
Preference number: 4 (lower is better)
Translates to: HATLAGFFNMSRRRISCKPVFCG*HEHYGQ
Trigger: CTGCCCGTAATGTTCATGGCAACCACAAAATACAGG...TTTACAGGATATCCTTCTCCGACTCATGTTGAAAAACCCTGCAAGAGTTGCATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR CCA 90 bp GTACTCTGCTCTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGGTTGCCATCAACGTaGGACAAGTTGAGCCAGGAG +
Preference number: 4 (lower is better)
Translates to: VLCSLWLHLPYGNKISLVWLPST*DKLSQE
Trigger: CTCCTGGCTCAACTTGTCCCACGTTGATGGCAACCA...CACCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAGAGCAGAGTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CCA 90 bp GACCTCCTTAAGGATCTAAATCTTAGACTGGTATCAGGTGCTGTGTTTTTATATTGGTTGCCATCAACGTaGGACAAGTTGAGCCAGGAG +
Preference number: 4 (lower is better)
Translates to: DLLKDLNLRLVSGAVFLYWLPST*DKLSQE
Trigger: CTCCTGGCTCAACTTGTCCCACGTTGATGGCAACCA...ATATAAAAACACAGCACCTGATACCAGTCTAAGATTTAGATCCTTAAGGAGGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105602.8
CDS-3UTR CCA 90 bp TATCTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGTTACGGGCAGACCAATaGCAGAAGAGAGGATCCAGT +
Preference number: 4 (lower is better)
Translates to: YLEGTHFSTMRSYLFPLKLRADQ*QKRGSS
Trigger: ACTGGATCCTCTCTTCTGCCATTGGTCTGCCCGTAA...CTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAGATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR CCA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCTGCCAGGAAACAGTCTaGAAAGTGGTTTCTGGAATC +
Preference number: 4 (lower is better)
Translates to: GRHENILTPPTILLTDLICQETV*KVVSGI
Trigger: GATTCCAGAAACCACTTTCCAGACTGTTTCCTGGCA...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR CCA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCGAACGCATAAAGAACTaGGTTCAGGCAGCTGTTTGT +
Preference number: 4 (lower is better)
Translates to: GRHENILTPPTILLTDLIERIKN*VQAAVC
Trigger: ACAAACAGCTGCCTGAACCCAGTTCTTTATGCGTTC...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR CCA 90 bp GGGTCACCTTCTATGTTGATCACAATTCACATACCACAGAGTATTGTGGTCCATGAACGCATAAAGAACTaGGTTCAGGCAGCTGTTTGT +
Preference number: 4 (lower is better)
Translates to: GSPSMLITIHIPQSIVVHERIKN*VQAAVC
Trigger: ACAAACAGCTGCCTGAACCCAGTTCTTTATGCGTTC...ATGGACCACAATACTCTGTGGTATGTGAATTGTGATCAACATAGAAGGTGACCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105607.8
CDS-3UTR CCA 90 bp ACTCTTGCAGGGTTTTTCAACATGAGTCGGAGAAGGATATCCTGTAAAGATCTGGAACGCATAAAGAACTaGGTTCAGGCAGCTGTTTGT +
Preference number: 4 (lower is better)
Translates to: TLAGFFNMSRRRISCKDLERIKN*VQAAVC
Trigger: ACAAACAGCTGCCTGAACCCAGTTCTTTATGCGTTC...CAGATCTTTACAGGATATCCTTCTCCGACTCATGTTGAAAAACCCTGCAAGAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR CCA 90 bp CATGCAACTCTTGCAGGGTTTTTCAACATGAGTCGGAGAAGGATATCCTGTAAAGAACGCATAAAGAACTaGGTTCAGGCAGCTGTTTGT +
Preference number: 4 (lower is better)
Translates to: HATLAGFFNMSRRRISCKERIKN*VQAAVC
Trigger: ACAAACAGCTGCCTGAACCCAGTTCTTTATGCGTTC...TTTACAGGATATCCTTCTCCGACTCATGTTGAAAAACCCTGCAAGAGTTGCATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR CCA 90 bp AGCGTTAGAGAATCTGAAGGGCAGCTATGTTTAAAACAGGGATGTGCTGGAATATTTGCTGTTCGATTGTaGAGGAAGTTGGGATGCAGA +
Preference number: 4 (lower is better)
Translates to: SVRESEGQLCLKQGCAGIFAVRL*RKLGCR
Trigger: TCTGCATCCCAACTTCCTCCACAATCGAACAGCAAA...TATTCCAGCACATCCCTGTTTTAAACATAGCTGCCCTTCAGATTCTCTAACGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
CDS-3UTR CCA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCTTTGCTGTTCGATTGTaGAGGAAGTTGGGATGCAGA +
Preference number: 4 (lower is better)
Translates to: GRHENILTPPTILLTDLIFAVRL*RKLGCR
Trigger: TCTGCATCCCAACTTCCTCCACAATCGAACAGCAAA...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR CCA 90 bp TCCCACCATCTTGCTCACCGATTTAATCTACTCATTCCATTACTGAAGTGTGAGTTTGCTGTTCGATTGTaGAGGAAGTTGGGATGCAGA +
Preference number: 4 (lower is better)
Translates to: SHHLAHRFNLLIPLLKCEFAVRL*RKLGCR
Trigger: TCTGCATCCCAACTTCCTCCACAATCGAACAGCAAA...CTCACACTTCAGTAATGGAATGAGTAGATTAAATCGGTGAGCAAGATGGTGGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105604.8
CDS-3UTR CCA 90 bp GACTCTGAGTTTGACCTTGTGAACACTTGGAGGACATGGAAAGAATTGGTAAGATTTGCTGTTCGATTGTaGAGGAAGTTGGGATGCAGA +
Preference number: 4 (lower is better)
Translates to: DSEFDLVNTWRTWKELVRFAVRL*RKLGCR
Trigger: TCTGCATCCCAACTTCCTCCACAATCGAACAGCAAA...TCTTACCAATTCTTTCCATGTCCTCCAAGTGTTCACAAGGTCAAACTCAGAGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105607.8
3UTR CAA 72 bp TTCCTTTGGAGTTCCACAGGAAGGCATGAAAATATTTaGACTCCTCCCACCATCTTGCTCACCGATTTAATC +
Preference number: 4 (lower is better)
Translates to: FLWSSTGRHENI*TPPTILLTDLI
Trigger: GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCCTGTGGAACTCCAAAGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR TCA 90 bp CTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGAAACTGCCAGAGCAAGGTTaGAAATGTAGATGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: LEGTHFSTMRSYLFPLKKLPEQG*KCRCWW
Trigger: CCACCAACATCTACATTTTCAACCTTGCTCTGGCAG...TTTCTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR TCA 90 bp GGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTCTGCCAGAGCAAGGTTaGAAATGTAGATGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: GYICHMVTKYLWCASPSSLPEQG*KCRCWW
Trigger: CCACCAACATCTACATTTTCAACCTTGCTCTGGCAG...AGAACTGGGAGAAGCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR TCA 90 bp TTCTCTAGTAAGCTCTCTATTTGTTTTGTATTTCAGTGTTCAGGAAACCTTGTCTGGGATGAGAGAACGTaGGGGTGCAATCTATGGACC +
Preference number: 4 (lower is better)
Translates to: FSSKLSICFVFQCSGNLVWDERT*GCNLWT
Trigger: GGTCCATAGATTGCACCCTCACGTTCTCTCATCCCA...GACAAGGTTTCCTGAACACTGAAATACAAAACAAATAGAGAGCTTACTAGAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105604.8
CDS-3UTR TCA 90 bp GACCTCCTTAAGGATCTAAATCTTAGACTGGTATCAGGTGCTGTGTTTTTATATGCATGCGGACACTCTTaGGTCGTAAGATCATCAGTC +
Preference number: 4 (lower is better)
Translates to: DLLKDLNLRLVSGAVFLYACGHS*VVRSSV
Trigger: GACTGATGATCTTACGACTCAAGAGTGTCCGCATGC...ATATAAAAACACAGCACCTGATACCAGTCTAAGATTTAGATCCTTAAGGAGGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105602.8
CDS-3UTR TCA 90 bp TATGGTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTGTGTATATGCCTTTGCATGCGGACACTCTTaGGTCGTAAGATCATCAGTC +
Preference number: 4 (lower is better)
Translates to: YGNKISLVCFSQFCVYAFACGHS*VVRSSV
Trigger: GACTGATGATCTTACGACTCAAGAGTGTCCGCATGC...AAAGGCATATACACAGAACTGGGAGAAGCACACCAAAGATATTTTGTTACCATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR TCA 90 bp CCTCATAATTATAGCCAGAAAGCGGTAGGCTTCAAACAAAGCAAAACAAACAAAGCATGCGGACACTCTTaGGTCGTAAGATCATCAGTC +
Preference number: 4 (lower is better)
Translates to: PHNYSQKAVGFKQSKTNKACGHS*VVRSSV
Trigger: GACTGATGATCTTACGACTCAAGAGTGTCCGCATGC...TTTGTTTGTTTTGCTTTGTTTGAAGCCTACCGCTTTCTGGCTATAATTATGAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154906.8
CDS-3UTR TCA 90 bp TCTTCATGTAAGGTGACTAGGTGCTTCCTAAGGAAGTTCCTTGTTTATTTGCACTTCCATCTCTCTGTCTaGGCTTTTGGAATGCAGACT +
Preference number: 4 (lower is better)
Translates to: SSCKVTRCFLRKFLVYLHFHLSV*AFGMQT
Trigger: AGTCTGCATTCCAAAAGCTCAGACAGAGAGATGGAA...GTGCAAATAAACAAGGAACTTCCTTAGGAAGCACCTAGTCACCTTACATGAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063036.14
CDS-3UTR GCA 90 bp TATCTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGCAATCTATGGACCCCTaGCTGTATTTTGTGGTTGCC +
Preference number: 4 (lower is better)
Translates to: YLEGTHFSTMRSYLFPLKQSMDP*LYFVVA
Trigger: GGCAACCACAAAATACAGGCAGGGGTCCATAGATTG...CTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAGATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR GCA 90 bp CTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTTCTCCCCAATCTATGGACCCCTaGCTGTATTTTGTGGTTGCC +
Preference number: 4 (lower is better)
Translates to: LYGYICHMVTKYLWCASPQSMDP*LYFVVA
Trigger: GGCAACCACAAAATACAGGCAGGGGTCCATAGATTG...GGGAGAAGCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR GCA 90 bp GGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTCAATCTATGGACCCCTaGCTGTATTTTGTGGTTGCC +
Preference number: 4 (lower is better)
Translates to: GYICHMVTKYLWCASPSSQSMDP*LYFVVA
Trigger: GGCAACCACAAAATACAGGCAGGGGTCCATAGATTG...AGAACTGGGAGAAGCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR GCA 90 bp CTCTGCTCTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCCAATCTATGGACCCCTaGCTGTATTTTGTGGTTGCC +
Preference number: 4 (lower is better)
Translates to: LCSLWLHLPYGNKISLVCQSMDP*LYFVVA
Trigger: GGCAACCACAAAATACAGGCAGGGGTCCATAGATTG...GCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAGAGCAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CCA 90 bp TGCTCTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTTCTTACGGGCAGACCAATaGCAGAAGAGAGGATCCAGT +
Preference number: 4 (lower is better)
Translates to: CSLWLHLPYGNKISLVCFLRADQ*QKRGSS
Trigger: ACTGGATCCTCTCTTCTGCCATTGGTCTGCCCGTAA...GAAGCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAGAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CCA 90 bp GACCTCCTTAAGGATCTAAATCTTAGACTGGTATCAGGTGCTGTGTTTTTATATTTACGGGCAGACCAATaGCAGAAGAGAGGATCCAGT +
Preference number: 4 (lower is better)
Translates to: DLLKDLNLRLVSGAVFLYLRADQ*QKRGSS
Trigger: ACTGGATCCTCTCTTCTGCCATTGGTCTGCCCGTAA...ATATAAAAACACAGCACCTGATACCAGTCTAAGATTTAGATCCTTAAGGAGGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105602.8
CDS-3UTR CCA 90 bp TTGTTTTGTATTTCAGTGTTCAGGAAACCTTGTCTAATCAGTCCGTTCATTCACTTACGGGCAGACCAATaGCAGAAGAGAGGATCCAGT +
Preference number: 4 (lower is better)
Translates to: LFCISVFRKPCLISPFIHLRADQ*QKRGSS
Trigger: ACTGGATCCTCTCTTCTGCCATTGGTCTGCCCGTAA...GTGAATGAACGGACTGATTAGACAAGGTTTCCTGAACACTGAAATACAAAACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105604.8
CDS-3UTR CCA 90 bp GTACTCTGCTCTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTTACGGGCAGACCAATaGCAGAAGAGAGGATCCAGT +
Preference number: 4 (lower is better)
Translates to: VLCSLWLHLPYGNKISLVLRADQ*QKRGSS
Trigger: ACTGGATCCTCTCTTCTGCCATTGGTCTGCCCGTAA...CACCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAGAGCAGAGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CCA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCGATTGTGGAGGAAGTTaGGATGCAGAACTCTCTAAA +
Preference number: 4 (lower is better)
Translates to: GRHENILTPPTILLTDLIDCGGS*DAELSK
Trigger: TTTAGAGAGTTCTGCATCCCAACTTCCTCCACAATC...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR CCA 90 bp TCCCACCATCTTGCTCACCGATTTAATCTACTCATTCCATTACTGAAGTGTGAGGATTGTGGAGGAAGTTaGGATGCAGAACTCTCTAAA +
Preference number: 4 (lower is better)
Translates to: SHHLAHRFNLLIPLLKCEDCGGS*DAELSK
Trigger: TTTAGAGAGTTCTGCATCCCAACTTCCTCCACAATC...CTCACACTTCAGTAATGGAATGAGTAGATTAAATCGGTGAGCAAGATGGTGGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105604.8
CDS-3UTR CCA 90 bp AATGGAGCAGTTTCTGCTTCCAGATTTTCTAGCTGGTGGTTAGTTCGATCCACTCTCTGTCTGAGCTTTTaGAATGCAGACTTAGAGAAA +
Preference number: 4 (lower is better)
Translates to: NGAVSASRFSSWWLVRSTLCLSF*NADLEK
Trigger: TTTCTCTAAGTCTGCATTCCAAAAGCTCAGACAGAG...AGTGGATCGAACTAACCACCAGCTAGAAAATCTGGAAGCAGAAACTGCTCCATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
CDS-3UTR CCA 90 bp GGAAGCAACATTTTCCCTCACATATTCCCTATGGAACTTTCCATAGAAGGTGACTCCAGATTTTCTAGCTaGTGGTTAGTTCGATCCACT +
Preference number: 4 (lower is better)
Translates to: GSNIFPHIFPMELSIEGDSRFSS*WLVRST
Trigger: AGTGGATCGAACTAACCACCAGCTAGAAAATCTGGA...GTCACCTTCTATGGAAAGTTCCATAGGGAATATGTGAGGGAAAATGTTGCTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105607.8
CDS-3UTR CCA 90 bp ACACAATTTTCTGACTCATTACACTCTCAGTCTTTATCAGCTCACCGCCAGGTGGATAATTTCCTTCCTTaGAATGAGGTGTCTGAGGTA +
Preference number: 4 (lower is better)
Translates to: TQFSDSLHSQSLSAHRQVDNFLP*NEVSEV
Trigger: TACCTCAGACACCTCATTCCAAGGAAGGAAATTATC...CACCTGGCGGTGAGCTGATAAAGACTGAGAGTGTAATGAGTCAGAAAATTGTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150374.8
3UTR CAA 72 bp GATCACAATTCACATACCACAGAGTATTGTGGTCCATaGGATGTTTCTGTACATGAGCTGGATTCAGTAGTG +
Preference number: 4 (lower is better)
Translates to: DHNSHTTEYCGP*DVSVHELDSVV
Trigger: CACTACTGAATCCAGCTCATGTACAGAAACATCCAATGGACCACAATACTCTGTGGTATGTGAATTGTGATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000152674.2
CDS-3UTR TCA 90 bp GACCTCCTTAAGGATCTAAATCTTAGACTGGTATCAGGTGCTGTGTTTTTATATCTGCCAGAGCAAGGTTaGAAATGTAGATGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: DLLKDLNLRLVSGAVFLYLPEQG*KCRCWW
Trigger: CCACCAACATCTACATTTTCAACCTTGCTCTGGCAG...ATATAAAAACACAGCACCTGATACCAGTCTAAGATTTAGATCCTTAAGGAGGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105602.8
CDS-3UTR TCA 90 bp GTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTGTGTATATGCCTTTTCAACTGCCAGAGCAAGGTTaGAAATGTAGATGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: VTKYLWCASPSSVYMPFQLPEQG*KCRCWW
Trigger: CCACCAACATCTACATTTTCAACCTTGCTCTGGCAG...TTGAAAAGGCATATACACAGAACTGGGAGAAGCACACCAAAGATATTTTGTTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092729.11
ENSMUST00000154906.8
CDS-3UTR TCA 90 bp TATCTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGTCCAGTTGCAGACATTaGCAATTTTGGCATTTCGGG +
Preference number: 4 (lower is better)
Translates to: YLEGTHFSTMRSYLFPLKSSCRH*QFWHFG
Trigger: CCCGAAATGCCAAAATTGTCAATGTCTGCAACTGGA...CTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAGATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR TCA 90 bp CTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTTCTCCCTCCAGTTGCAGACATTaGCAATTTTGGCATTTCGGG +
Preference number: 4 (lower is better)
Translates to: LYGYICHMVTKYLWCASPSSCRH*QFWHFG
Trigger: CCCGAAATGCCAAAATTGTCAATGTCTGCAACTGGA...GGGAGAAGCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR TCA 90 bp TTCTCTAGTAAGCTCTCTATTTGTTTTGTATTTCAGTGTTCAGGAAACCTTGTCGCATGCGGACACTCTTaGGTCGTAAGATCATCAGTC +
Preference number: 4 (lower is better)
Translates to: FSSKLSICFVFQCSGNLVACGHS*VVRSSV
Trigger: GACTGATGATCTTACGACTCAAGAGTGTCCGCATGC...GACAAGGTTTCCTGAACACTGAAATACAAAACAAATAGAGAGCTTACTAGAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105604.8
CDS-3UTR GCA 90 bp TATCTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGCCTGTATTTTGTGGTTaGCATGAACATTACGGGCAG +
Preference number: 4 (lower is better)
Translates to: YLEGTHFSTMRSYLFPLKPVFCG*HEHYGQ
Trigger: CTGCCCGTAATGTTCATGGCAACCACAAAATACAGG...CTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAGATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR GCA 90 bp GGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTCCTGTATTTTGTGGTTaGCATGAACATTACGGGCAG +
Preference number: 4 (lower is better)
Translates to: GYICHMVTKYLWCASPSSPVFCG*HEHYGQ
Trigger: CTGCCCGTAATGTTCATGGCAACCACAAAATACAGG...AGAACTGGGAGAAGCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR GCA 90 bp CTCTGCTCTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCCCTGTATTTTGTGGTTaGCATGAACATTACGGGCAG +
Preference number: 4 (lower is better)
Translates to: LCSLWLHLPYGNKISLVCPVFCG*HEHYGQ
Trigger: CTGCCCGTAATGTTCATGGCAACCACAAAATACAGG...GCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAGAGCAGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR GCA 90 bp GACCTCCTTAAGGATCTAAATCTTAGACTGGTATCAGGTGCTGTGTTTTTATATCAATCTATGGACCCCTaGCTGTATTTTGTGGTTGCC +
Preference number: 4 (lower is better)
Translates to: DLLKDLNLRLVSGAVFLYQSMDP*LYFVVA
Trigger: GGCAACCACAAAATACAGGCAGGGGTCCATAGATTG...ATATAAAAACACAGCACCTGATACCAGTCTAAGATTTAGATCCTTAAGGAGGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000105602.8
CDS-3UTR GCA 90 bp CTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGAAATTGAGGTTTTTGGTGTaGCTGGTGGTTAGTTCGATC +
Preference number: 4 (lower is better)
Translates to: LEGTHFSTMRSYLFPLKKLRFLV*LVVSSI
Trigger: GATCGAACTAACCACCAGGCACACCAAAAACCTCAA...TTTCTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR CCA 90 bp TATCTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGTGCCAGGAAACAGTCTaGAAAGTGGTTTCTGGAATC +
Preference number: 4 (lower is better)
Translates to: YLEGTHFSTMRSYLFPLKCQETV*KVVSGI
Trigger: GATTCCAGAAACCACTTTCCAGACTGTTTCCTGGCA...CTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAGATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR CCA 90 bp CTCTGCTCTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTGCCAGGAAACAGTCTaGAAAGTGGTTTCTGGAATC +
Preference number: 4 (lower is better)
Translates to: LCSLWLHLPYGNKISLVCCQETV*KVVSGI
Trigger: GATTCCAGAAACCACTTTCCAGACTGTTTCCTGGCA...GCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAGAGCAGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CCA 90 bp CTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGAAAGAACGCATAAAGAACTaGGTTCAGGCAGCTGTTTGT +
Preference number: 4 (lower is better)
Translates to: LEGTHFSTMRSYLFPLKKERIKN*VQAAVC
Trigger: ACAAACAGCTGCCTGAACCCAGTTCTTTATGCGTTC...TTTCTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR CCA 90 bp AACACGCAATACGGCAAACCAGACAATACATTAGACATTACACTTACAACTCCTGAACGCATAAAGAACTaGGTTCAGGCAGCTGTTTGT +
Preference number: 4 (lower is better)
Translates to: NTQYGKPDNTLDITLTTPERIKN*VQAAVC
Trigger: ACAAACAGCTGCCTGAACCCAGTTCTTTATGCGTTC...AGGAGTTGTAAGTGTAATGTCTAATGTATTGTCTGGTTTGCCGTATTGCGTGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CCA 90 bp CTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGAAATTTGCTGTTCGATTGTaGAGGAAGTTGGGATGCAGA +
Preference number: 4 (lower is better)
Translates to: LEGTHFSTMRSYLFPLKKFAVRL*RKLGCR
Trigger: TCTGCATCCCAACTTCCTCCACAATCGAACAGCAAA...TTTCTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR CCA 90 bp CATATGGTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTGTGTATATGCCTTTTGCTGTTCGATTGTaGAGGAAGTTGGGATGCAGA +
Preference number: 4 (lower is better)
Translates to: HMVTKYLWCASPSSVYMPFAVRL*RKLGCR
Trigger: TCTGCATCCCAACTTCCTCCACAATCGAACAGCAAA...AGGCATATACACAGAACTGGGAGAAGCACACCAAAGATATTTTGTTACCATATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CCA 90 bp CTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGAAATTTTGGTGTGCCTGGTaGTTAGTTCGATCCACTGTA +
Preference number: 4 (lower is better)
Translates to: LEGTHFSTMRSYLFPLKKFWCAW*LVRSTV
Trigger: TACAGTGGATCGAACTAACCACCAGGCACACCAAAA...TTTCTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR TCA 90 bp GACCTCCTTAAGGATCTAAATCTTAGACTGGTATCAGGTGCTGTGTTTTTATATTCCAGTTGCAGACATTaGCAATTTTGGCATTTCGGG +
Preference number: 4 (lower is better)
Translates to: DLLKDLNLRLVSGAVFLYSSCRH*QFWHFG
Trigger: CCCGAAATGCCAAAATTGTCAATGTCTGCAACTGGA...ATATAAAAACACAGCACCTGATACCAGTCTAAGATTTAGATCCTTAAGGAGGTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105602.8
CDS-3UTR TCA 90 bp TTGTTTTGTATTTCAGTGTTCAGGAAACCTTGTCTAATCAGTCCGTTCATTCACTCCAGTTGCAGACATTaGCAATTTTGGCATTTCGGG +
Preference number: 4 (lower is better)
Translates to: LFCISVFRKPCLISPFIHSSCRH*QFWHFG
Trigger: CCCGAAATGCCAAAATTGTCAATGTCTGCAACTGGA...GTGAATGAACGGACTGATTAGACAAGGTTTCCTGAACACTGAAATACAAAACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105604.8
CDS-3UTR TCA 90 bp CCTCATAATTATAGCCAGAAAGCGGTAGGCTTCAAACAAAGCAAAACAAACAAATCCAGTTGCAGACATTaGCAATTTTGGCATTTCGGG +
Preference number: 4 (lower is better)
Translates to: PHNYSQKAVGFKQSKTNKSSCRH*QFWHFG
Trigger: CCCGAAATGCCAAAATTGTCAATGTCTGCAACTGGA...TTTGTTTGTTTTGCTTTGTTTGAAGCCTACCGCTTTCTGGCTATAATTATGAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154906.8
CDS-3UTR GCA 90 bp GACCTCCTTAAGGATCTAAATCTTAGACTGGTATCAGGTGCTGTGTTTTTATATCCTGTATTTTGTGGTTaGCATGAACATTACGGGCAG +
Preference number: 4 (lower is better)
Translates to: DLLKDLNLRLVSGAVFLYPVFCG*HEHYGQ
Trigger: CTGCCCGTAATGTTCATGGCAACCACAAAATACAGG...ATATAAAAACACAGCACCTGATACCAGTCTAAGATTTAGATCCTTAAGGAGGTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105602.8
CDS-3UTR GCA 90 bp AAATTTAAATCCTTACTCTTTCAAAGTGATGGGCAAGAGTTTGAAAGCCCCTTACAATCTATGGACCCCTaGCTGTATTTTGTGGTTGCC +
Preference number: 4 (lower is better)
Translates to: KFKSLLFQSDGQEFESPLQSMDP*LYFVVA
Trigger: GGCAACCACAAAATACAGGCAGGGGTCCATAGATTG...TAAGGGGCTTTCAAACTCTTGCCCATCACTTTGAAAGAGTAAGGATTTAAATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
CDS-3UTR GCA 90 bp TTCTCTAGTAAGCTCTCTATTTGTTTTGTATTTCAGTGTTCAGGAAACCTTGTCCAATCTATGGACCCCTaGCTGTATTTTGTGGTTGCC +
Preference number: 4 (lower is better)
Translates to: FSSKLSICFVFQCSGNLVQSMDP*LYFVVA
Trigger: GGCAACCACAAAATACAGGCAGGGGTCCATAGATTG...GACAAGGTTTCCTGAACACTGAAATACAAAACAAATAGAGAGCTTACTAGAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000105604.8
CDS-3UTR CCA 90 bp GACCTCCTTAAGGATCTAAATCTTAGACTGGTATCAGGTGCTGTGTTTTTATATTGCCAGGAAACAGTCTaGAAAGTGGTTTCTGGAATC +
Preference number: 4 (lower is better)
Translates to: DLLKDLNLRLVSGAVFLYCQETV*KVVSGI
Trigger: GATTCCAGAAACCACTTTCCAGACTGTTTCCTGGCA...ATATAAAAACACAGCACCTGATACCAGTCTAAGATTTAGATCCTTAAGGAGGTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105602.8
CDS-3UTR CCA 90 bp TTGTTTTGTATTTCAGTGTTCAGGAAACCTTGTCTAATCAGTCCGTTCATTCACTGCCAGGAAACAGTCTaGAAAGTGGTTTCTGGAATC +
Preference number: 4 (lower is better)
Translates to: LFCISVFRKPCLISPFIHCQETV*KVVSGI
Trigger: GATTCCAGAAACCACTTTCCAGACTGTTTCCTGGCA...GTGAATGAACGGACTGATTAGACAAGGTTTCCTGAACACTGAAATACAAAACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105604.8
CDS-3UTR CCA 90 bp GTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTGTGTATATGCCTTTTCAATGCCAGGAAACAGTCTaGAAAGTGGTTTCTGGAATC +
Preference number: 4 (lower is better)
Translates to: VTKYLWCASPSSVYMPFQCQETV*KVVSGI
Trigger: GATTCCAGAAACCACTTTCCAGACTGTTTCCTGGCA...TTGAAAAGGCATATACACAGAACTGGGAGAAGCACACCAAAGATATTTTGTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092729.11
ENSMUST00000154906.8
CDS-3UTR CCA 90 bp TATGGTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTGTGTATATGCCTTTGAACGCATAAAGAACTaGGTTCAGGCAGCTGTTTGT +
Preference number: 4 (lower is better)
Translates to: YGNKISLVCFSQFCVYAFERIKN*VQAAVC
Trigger: ACAAACAGCTGCCTGAACCCAGTTCTTTATGCGTTC...AAAGGCATATACACAGAACTGGGAGAAGCACACCAAAGATATTTTGTTACCATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CCA 90 bp GACCTCCTTAAGGATCTAAATCTTAGACTGGTATCAGGTGCTGTGTTTTTATATGAACGCATAAAGAACTaGGTTCAGGCAGCTGTTTGT +
Preference number: 4 (lower is better)
Translates to: DLLKDLNLRLVSGAVFLYERIKN*VQAAVC
Trigger: ACAAACAGCTGCCTGAACCCAGTTCTTTATGCGTTC...ATATAAAAACACAGCACCTGATACCAGTCTAAGATTTAGATCCTTAAGGAGGTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105602.8
CDS-3UTR CCA 90 bp ATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTGTGTATGAACGCATAAAGAACTaGGTTCAGGCAGCTGTTTGT +
Preference number: 4 (lower is better)
Translates to: ICHMVTKYLWCASPSSVYERIKN*VQAAVC
Trigger: ACAAACAGCTGCCTGAACCCAGTTCTTTATGCGTTC...ATACACAGAACTGGGAGAAGCACACCAAAGATATTTTGTTACCATATGGCAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CCA 90 bp GTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTGTGTATATGCCTTTTCAAGAACGCATAAAGAACTaGGTTCAGGCAGCTGTTTGT +
Preference number: 4 (lower is better)
Translates to: VTKYLWCASPSSVYMPFQERIKN*VQAAVC
Trigger: ACAAACAGCTGCCTGAACCCAGTTCTTTATGCGTTC...TTGAAAAGGCATATACACAGAACTGGGAGAAGCACACCAAAGATATTTTGTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092729.11
ENSMUST00000154906.8
CDS-3UTR CCA 90 bp TATCTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGGATTGTGGAGGAAGTTaGGATGCAGAACTCTCTAAA +
Preference number: 4 (lower is better)
Translates to: YLEGTHFSTMRSYLFPLKDCGGS*DAELSK
Trigger: TTTAGAGAGTTCTGCATCCCAACTTCCTCCACAATC...CTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAGATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR CCA 90 bp GTTGATCACAATTCACATACCACAGAGTATTGTGGTCCATTGGATGTTTCTGTAGATTGTGGAGGAAGTTaGGATGCAGAACTCTCTAAA +
Preference number: 4 (lower is better)
Translates to: VDHNSHTTEYCGPLDVSVDCGGS*DAELSK
Trigger: TTTAGAGAGTTCTGCATCCCAACTTCCTCCACAATC...TACAGAAACATCCAATGGACCACAATACTCTGTGGTATGTGAATTGTGATCAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105607.8
CDS-3UTR CCA 90 bp GGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTGATTGTGGAGGAAGTTaGGATGCAGAACTCTCTAAA +
Preference number: 4 (lower is better)
Translates to: GYICHMVTKYLWCASPSSDCGGS*DAELSK
Trigger: TTTAGAGAGTTCTGCATCCCAACTTCCTCCACAATC...AGAACTGGGAGAAGCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CCA 90 bp GGCAAACCAGACAATACATTAGACATTACACTTACAACTCCTAACCTTTATGAGTTTGCTGTTCGATTGTaGAGGAAGTTGGGATGCAGA +
Preference number: 4 (lower is better)
Translates to: GKPDNTLDITLTTPNLYEFAVRL*RKLGCR
Trigger: TCTGCATCCCAACTTCCTCCACAATCGAACAGCAAA...CTCATAAAGGTTAGGAGTTGTAAGTGTAATGTCTAATGTATTGTCTGGTTTGCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CCA 90 bp GACCTCCTTAAGGATCTAAATCTTAGACTGGTATCAGGTGCTGTGTTTTTATATTTTGCTGTTCGATTGTaGAGGAAGTTGGGATGCAGA +
Preference number: 4 (lower is better)
Translates to: DLLKDLNLRLVSGAVFLYFAVRL*RKLGCR
Trigger: TCTGCATCCCAACTTCCTCCACAATCGAACAGCAAA...ATATAAAAACACAGCACCTGATACCAGTCTAAGATTTAGATCCTTAAGGAGGTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105602.8
CDS-3UTR CCA 90 bp ATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTGTGTATTTTGCTGTTCGATTGTaGAGGAAGTTGGGATGCAGA +
Preference number: 4 (lower is better)
Translates to: ICHMVTKYLWCASPSSVYFAVRL*RKLGCR
Trigger: TCTGCATCCCAACTTCCTCCACAATCGAACAGCAAA...ATACACAGAACTGGGAGAAGCACACCAAAGATATTTTGTTACCATATGGCAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CCA 90 bp AGACATTGCTACTTATTTTCATACAGGTTTAAACCGCGGATCAATTCACAGCTTTTTGCTGTTCGATTGTaGAGGAAGTTGGGATGCAGA +
Preference number: 4 (lower is better)
Translates to: RHCYLFSYRFKPRINSQLFAVRL*RKLGCR
Trigger: TCTGCATCCCAACTTCCTCCACAATCGAACAGCAAA...AAGCTGTGAATTGATCCGCGGTTTAAACCTGTATGAAAATAAGTAGCAATGTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000154906.8
CDS-3UTR CCA 90 bp TCATTTTGGTATATCCTTAATTACTGGCTAAGGGTGGTCAGGAATGCAGGTAGTCTCTGTCTGAGCTTTTaGAATGCAGACTTAGAGAAA +
Preference number: 4 (lower is better)
Translates to: SFWYILNYWLRVVRNAGSLCLSF*NADLEK
Trigger: TTTCTCTAAGTCTGCATTCCAAAAGCTCAGACAGAG...ACTACCTGCATTCCTGACCACCCTTAGCCAGTAATTAAGGATATACCAAAATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
CDS-3UTR CCA 90 bp GAATCTGAAGGGCAGCTATGTTTAAAACAGGGATGTGCTGGAATAGAGAGCTTGTCAAATTTCATTATCTaGTGGTTAGTTCGATCCACT +
Preference number: 4 (lower is better)
Translates to: ESEGQLCLKQGCAGIESLSNFII*WLVRST
Trigger: AGTGGATCGAACTAACCACCAGATAATGAAATTTGA...CAAGCTCTCTATTCCAGCACATCCCTGTTTTAAACATAGCTGCCCTTCAGATTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
CDS-3UTR GCA 90 bp AAATTTAAATCCTTACTCTTTCAAAGTGATGGGCAAGAGTTTGAAAGCCCCTTACCTGTATTTTGTGGTTaGCATGAACATTACGGGCAG +
Preference number: 4 (lower is better)
Translates to: KFKSLLFQSDGQEFESPLPVFCG*HEHYGQ
Trigger: CTGCCCGTAATGTTCATGGCAACCACAAAATACAGG...TAAGGGGCTTTCAAACTCTTGCCCATCACTTTGAAAGAGTAAGGATTTAAATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
CDS-3UTR GCA 90 bp AACTTAACACAATTTTCTGACTCATTACACTCTCAGTCTTTATCAGCTCACCGCTCTGAGCTTTTGGAATaGAGACTTAGAGAAAGCTTC +
Preference number: 4 (lower is better)
Translates to: NLTQFSDSLHSQSLSAHRSELLE*RLRESF
Trigger: GAAGCTTTCTCTAAGTCTGCATTCCAAAAGCTCAGA...GCGGTGAGCTGATAAAGACTGAGAGTGTAATGAGTCAGAAAATTGTGTTAAGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000150374.8
CDS-3UTR CCA 90 bp CTTTGGTGTGCTTCTCCCAGTTCTGTGTATATGCCTTTTCAAAATAAATCTATTTGCCAGGAAACAGTCTaGAAAGTGGTTTCTGGAATC +
Preference number: 4 (lower is better)
Translates to: LWCASPSSVYMPFQNKSICQETV*KVVSGI
Trigger: GATTCCAGAAACCACTTTCCAGACTGTTTCCTGGCA...AATAGATTTATTTTGAAAAGGCATATACACAGAACTGGGAGAAGCACACCAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092729.11
ENSMUST00000154906.8
CDS-3UTR CCA 90 bp TTCTCTAGTAAGCTCTCTATTTGTTTTGTATTTCAGTGTTCAGGAAACCTTGTCGAACGCATAAAGAACTaGGTTCAGGCAGCTGTTTGT +
Preference number: 4 (lower is better)
Translates to: FSSKLSICFVFQCSGNLVERIKN*VQAAVC
Trigger: ACAAACAGCTGCCTGAACCCAGTTCTTTATGCGTTC...GACAAGGTTTCCTGAACACTGAAATACAAAACAAATAGAGAGCTTACTAGAGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105604.8
CDS-3UTR CCA 90 bp TATGGTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTGTGTATATGCCTTTGATTGTGGAGGAAGTTaGGATGCAGAACTCTCTAAA +
Preference number: 4 (lower is better)
Translates to: YGNKISLVCFSQFCVYAFDCGGS*DAELSK
Trigger: TTTAGAGAGTTCTGCATCCCAACTTCCTCCACAATC...AAAGGCATATACACAGAACTGGGAGAAGCACACCAAAGATATTTTGTTACCATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CCA 90 bp GACCTCCTTAAGGATCTAAATCTTAGACTGGTATCAGGTGCTGTGTTTTTATATGATTGTGGAGGAAGTTaGGATGCAGAACTCTCTAAA +
Preference number: 4 (lower is better)
Translates to: DLLKDLNLRLVSGAVFLYDCGGS*DAELSK
Trigger: TTTAGAGAGTTCTGCATCCCAACTTCCTCCACAATC...ATATAAAAACACAGCACCTGATACCAGTCTAAGATTTAGATCCTTAAGGAGGTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105602.8
CDS-3UTR CCA 90 bp AAATTTAAATCCTTACTCTTTCAAAGTGATGGGCAAGAGTTTGAAAGCCCCTTATTTGCTGTTCGATTGTaGAGGAAGTTGGGATGCAGA +
Preference number: 4 (lower is better)
Translates to: KFKSLLFQSDGQEFESPLFAVRL*RKLGCR
Trigger: TCTGCATCCCAACTTCCTCCACAATCGAACAGCAAA...TAAGGGGCTTTCAAACTCTTGCCCATCACTTTGAAAGAGTAAGGATTTAAATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
3UTR CAA 72 bp TTAAAAATTCCACATAGGGAAGGGTCACCTTCTATGTaGATCACAATTCACATACCACAGAGTATTGTGGTC +
Preference number: 4 (lower is better)
Translates to: LKIPHREGSPSM*ITIHIPQSIVV
Trigger: GACCACAATACTCTGTGGTATGTGAATTGTGATCAACATAGAAGGTGACCCTTCCCTATGTGGAATTTTTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000152674.2
3UTR CAA 72 bp CTATGGTTACATTTGCCATATGGTAACAAAATATCTTaGGTGTGCTTCTCCCAGTTCTGTGTATATGCCTTT +
Preference number: 4 (lower is better)
Translates to: LWLHLPYGNKIS*VCFSQFCVYAF
Trigger: AAAGGCATATACACAGAACTGGGAGAAGCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
3UTR CAA 72 bp GGCTACGAATTTTCTCTAGTAAGCTCTCTATTTGTTTaGTATTTCAGTGTTCAGGAAACCTTGTCTAATCAG +
Preference number: 4 (lower is better)
Translates to: GYEFSLVSSLFV*YFSVQETLSNQ
Trigger: CTGATTAGACAAGGTTTCCTGAACACTGAAATACAAAACAAATAGAGAGCTTACTAGAGAAAATTCGTAGCC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105604.8
CDS GCA 90 bp AAGAGTGTTCGGGTTCCAGGCGCCCCAGCCTCTTCCTCTCACAGCTaGCCTAGGCTCCGTCAGTTTCTTACAAGGACAAGCCCTGAGGTA +
Preference number: 5 (lower is better)
Translates to: KSVRVPGAPASSSHS*PRLRQFLTRTSPEV
Trigger: TACCTCAGGGCTTGTCCTTGTAAGAAACTGACGGAGCCTAGGGCAGCTGTGAGAGGAAGAGGCTGGGGCGCCTGGAACCCGAACACTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
CDS GCA 90 bp TGCCTTCGTTTGACCTCTGTTGGCTCCAGGCATGCATGCACATGGTaGCTGGTGGTTAGTTCGATCCACTGTATTAGCCGTGGAGGGGTG +
Preference number: 5 (lower is better)
Translates to: CLRLTSVGSRHACTW*LVVSSIHCISRGGV
Trigger: CACCCCTCCACGGCTAATACAGTGGATCGAACTAACCACCAGGCACCATGTGCATGCATGCCTGGAGCCAACAGAGGTCAAACGAAGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129954.8
CDS CCA 90 bp GAGATGGCTCAGTGGTTCAGCGCACTTGCTGCCTTCGTAAGGACCTaGGTTGGTTTCAGCATCTGCCTGGTGGCTCCCAACTGTCTTCAA +
Preference number: 5 (lower is better)
Translates to: EMAQWFSALAAFVRT*VGFSICLVAPNCLQ
Trigger: TTGAAGACAGTTGGGAGCCACCAGGCAGATGCTGAAACCAACCCAGGTCCTTACGAAGGCAGCAAGTGCGCTGAACCACTGAGCCATCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129954.8
CDS-3UTR CAA 90 bp AAGGCATCTTCCCTCTCGCTGTCTTCTAGCAGAGCCTGCACCTCCACACTGCTCGGTTCAGGCAGCTGTTaGTGTAACCCAAGGCAATGC +
Preference number: 5 (lower is better)
Translates to: KASSLSLSSSRACTSTLLGSGSC*CNPRQC
Trigger: GCATTGCCTTGGGTTACACAAACAGCTGCCTGAACC...GAGCAGTGTGGAGGTGCAGGCTCTGCTAGAAGACAGCGAGAGGGAAGATGCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CAA 90 bp GTCTTAGAGGAAGCAACCAAGCAGCCACGCCCCTGTGAGCCTGGGAGGGAGATCAGTTTTGCTGTTCGATaGTGGAGGAAGTTGGGATGC +
Preference number: 5 (lower is better)
Translates to: VLEEATKQPRPCEPGREISFAVR*WRKLGC
Trigger: GCATCCCAACTTCCTCCACAATCGAACAGCAAAACT...GATCTCCCTCCCAGGCTCACAGGGGCGTGGCTGCTTGGTTGCTTCCTCTAAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
CDS-3UTR CAA 90 bp ACAGGGATGTGCTGGAATAGAGAGCTTGGGGCTCTGCTTCCATTAGAGGAAGGTCATGGGTCGGACTGGTaGCCATCAACGTGGGACAAG +
Preference number: 5 (lower is better)
Translates to: TGMCWNRELGALLPLEEGHGSDW*PSTWDK
Trigger: CTTGTCCCACGTTGATGGCAACCAGTCCGACCCATG...ACCTTCCTCTAATGGAAGCAGAGCCCCAAGCTCTCTATTCCAGCACATCCCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078634.12
ENSMUST00000105603.2
CDS-3UTR CAA 90 bp CGGATTCCTGTCTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCACATGGGTCGGACTGGTaGCCATCAACGTGGGACAAG +
Preference number: 5 (lower is better)
Translates to: RIPVLGHHQEEGSSFLCPHGSDW*PSTWDK
Trigger: CTTGTCCCACGTTGATGGCAACCAGTCCGACCCATG...TGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGACAGGAATCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105601.9
ENSMUST00000129954.8
ENSMUST00000144264.8
CDS-3UTR CAA 90 bp GGTTGGCTGGTGGTTAGTTCGATCCACTGTATTAGCCGTGGAGGGGTGTTCCCTGGTTCAGGCAGCTGTTaGTGTAACCCAAGGCAATGC +
Preference number: 5 (lower is better)
Translates to: GWLVVSSIHCISRGGVFPGSGSC*CNPRQC
Trigger: GCATTGCCTTGGGTTACACAAACAGCTGCCTGAACC...AGGGAACACCCCTCCACGGCTAATACAGTGGATCGAACTAACCACCAGCCAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
CDS-3UTR CAA 90 bp CGGAGAAGGATATCCTGTAAAGATCTGGGCCACGCTGACTGCCAGGGTTGGCTTGGTTCAGGCAGCTGTTaGTGTAACCCAAGGCAATGC +
Preference number: 5 (lower is better)
Translates to: RRRISCKDLGHADCQGWLGSGSC*CNPRQC
Trigger: GCATTGCCTTGGGTTACACAAACAGCTGCCTGAACC...AAGCCAACCCTGGCAGTCAGCGTGGCCCAGATCTTTACAGGATATCCTTCTCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR CAA 90 bp GGAAGTTCCTTGTTTATTTGCACACAGTGGCATGAGAGCGGTGTCCACAGAAGCCATGGGTCGGACTGGTaGCCATCAACGTGGGACAAG +
Preference number: 5 (lower is better)
Translates to: GSSLFICTQWHESGVHRSHGSDW*PSTWDK
Trigger: CTTGTCCCACGTTGATGGCAACCAGTCCGACCCATG...GCTTCTGTGGACACCGCTCTCATGCCACTGTGTGCAAATAAACAAGGAACTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105611.8
ENSMUST00000144264.8
CDS-3UTR CAA 90 bp GATTCCTGTCTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCATGGGTCGGACTGGTaGCCATCAACGTGGGACAAG +
Preference number: 5 (lower is better)
Translates to: DSCLGPSSGRRFLIPLSMHGSDW*PSTWDK
Trigger: CTTGTCCCACGTTGATGGCAACCAGTCCGACCCATG...CATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGACAGGAATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105601.9
ENSMUST00000129954.8
ENSMUST00000144264.8
CDS-3UTR CAA 90 bp GTTGGCTGGTGGTTAGTTCGATCCACTGTATTAGCCGTGGAGGGGTGTTCCCTAGGTTCAGGCAGCTGTTaGTGTAACCCAAGGCAATGC +
Preference number: 5 (lower is better)
Translates to: VGWWLVRSTVLAVEGCSLGSGSC*CNPRQC
Trigger: GCATTGCCTTGGGTTACACAAACAGCTGCCTGAACC...TAGGGAACACCCCTCCACGGCTAATACAGTGGATCGAACTAACCACCAGCCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
CDS-3UTR CAA 90 bp TGTAAAGATCTGGGCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGGATACAAGGGTTCAGGCAGCTGTTaGTGTAACCCAAGGCAATGC +
Preference number: 5 (lower is better)
Translates to: CKDLGHADCQGWLQRGYKGSGSC*CNPRQC
Trigger: GCATTGCCTTGGGTTACACAAACAGCTGCCTGAACC...CTTGTATCCTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGCCCAGATCTTTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR CAA 90 bp CTCAAAGACAAGGGACAGGTCACACTGGATGCTGTACACACCCTCTCTGGGAGTGGTTCAGGCAGCTGTTaGTGTAACCCAAGGCAATGC +
Preference number: 5 (lower is better)
Translates to: LKDKGQVTLDAVHTLSGSGSGSC*CNPRQC
Trigger: GCATTGCCTTGGGTTACACAAACAGCTGCCTGAACC...ACTCCCAGAGAGGGTGTGTACAGCATCCAGTGTGACCTGTCCCTTGTCTTTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
CDS-3UTR CAA 90 bp GCAGGGTTTTTCAACATGAGTCGGAGAAGGATATCCTGTAAAGATCTGGGCCACCATGGGTCGGACTGGTaGCCATCAACGTGGGACAAG +
Preference number: 5 (lower is better)
Translates to: AGFFNMSRRRISCKDLGHHGSDW*PSTWDK
Trigger: CTTGTCCCACGTTGATGGCAACCAGTCCGACCCATG...GTGGCCCAGATCTTTACAGGATATCCTTCTCCGACTCATGTTGAAAAACCCTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
ENSMUST00000129954.8
ENSMUST00000144264.8
CDS-3UTR CAA 90 bp CTGGGAGGGAGATCCAGCATGACACGTAGGGAGGGGAGGAAGAGCCCCAGCTTTTGTTGTAGTAGTCTATaGAGATCACGATCTTGCAGA +
Preference number: 5 (lower is better)
Translates to: LGGRSSMTRREGRKSPSFCCSSL*RSRSCR
Trigger: TCTGCAAGATCGTGATCTCAATAGACTACTACAACA...AAAGCTGGGGCTCTTCCTCCCCTCCCTACGTGTCATGCTGGATCTCCCTCCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
CDS-3UTR CAA 90 bp TCCTGTAAAGATCTGGGCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGGATACAGCATGCGGACACTCTaGAGTCGTAAGATCATCAGT +
Preference number: 5 (lower is better)
Translates to: SCKDLGHADCQGWLQRGYSMRTL*SRKIIS
Trigger: ACTGATGATCTTACGACTCAAGAGTGTCCGCATGCT...GTATCCTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGCCCAGATCTTTACAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR CAA 90 bp GGCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGGATACAAGGAAATGGTATGCAGCATGCGGACACTCTaGAGTCGTAAGATCATCAGT +
Preference number: 5 (lower is better)
Translates to: GHADCQGWLQRGYKEMVCSMRTL*SRKIIS
Trigger: ACTGATGATCTTACGACTCAAGAGTGTCCGCATGCT...GCATACCATTTCCTTGTATCCTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR CAA 90 bp ACAGGGATGTGCTGGAATAGAGAGCTTGGGGCTCTGCTTCCATTAGAGGAAGGTGGTTCAGGCAGCTGTTaGTGTAACCCAAGGCAATGC +
Preference number: 5 (lower is better)
Translates to: TGMCWNRELGALLPLEEGGSGSC*CNPRQC
Trigger: GCATTGCCTTGGGTTACACAAACAGCTGCCTGAACC...ACCTTCCTCTAATGGAAGCAGAGCCCCAAGCTCTCTATTCCAGCACATCCCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078634.12
ENSMUST00000105603.2
CDS-3UTR CAA 90 bp TTATGTGTCTCGATGTGGATAACAACGAGTGGGGCATGGGGAGGAAGCAGCAGAGGTTCAGGCAGCTGTTaGTGTAACCCAAGGCAATGC +
Preference number: 5 (lower is better)
Translates to: LCVSMWITTSGAWGGSSRGSGSC*CNPRQC
Trigger: GCATTGCCTTGGGTTACACAAACAGCTGCCTGAACC...TCTGCTGCTTCCTCCCCATGCCCCACTCGTTGTTATCCACATCGAGACACATAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
CDS-3UTR CAA 90 bp TTTTCCAGGAAACCAGCGCCTCCCACAAACCCTGACAGCAACCTGATTCCAAGTGGTTCAGGCAGCTGTTaGTGTAACCCAAGGCAATGC +
Preference number: 5 (lower is better)
Translates to: FSRKPAPPTNPDSNLIPSGSGSC*CNPRQC
Trigger: GCATTGCCTTGGGTTACACAAACAGCTGCCTGAACC...ACTTGGAATCAGGTTGCTGTCAGGGTTTGTGGGAGGCGCTGGTTTCCTGGAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000147171.8
CDS-3UTR CAA 90 bp AGTAGTGGCCTGCAGTCTCTTCCTTCTGAGTGCTTGACACAGTCTGAGTGTCTCGGTTCAGGCAGCTGTTaGTGTAACCCAAGGCAATGC +
Preference number: 5 (lower is better)
Translates to: SSGLQSLPSECLTQSECLGSGSC*CNPRQC
Trigger: GCATTGCCTTGGGTTACACAAACAGCTGCCTGAACC...GAGACACTCAGACTGTGTCAAGCACTCAGAAGGAAGAGACTGCAGGCCACTACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000147171.8
CDS-3UTR CAA 90 bp TCTCCAATTATCTTCCCTTCTACTCTCTGGCTGTGCAAGATCCACACTGACATGTCAACGTGGGACAAGTaGAGCCAGGAGCCAGGTGCT +
Preference number: 5 (lower is better)
Translates to: SPIIFPSTLWLCKIHTDMSTWDK*SQEPGA
Trigger: AGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTGA...CATGTCAGTGTGGATCTTGCACAGCCAGAGAGTAGAAGGGAAGATAATTGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
CDS-3UTR CAA 90 bp TCCTCTGTCCATGCAACTCTTGCAGGGTTTTTCAACATGAGTCGGAGAAGGATATCAACGTGGGACAAGTaGAGCCAGGAGCCAGGTGCT +
Preference number: 5 (lower is better)
Translates to: SSVHATLAGFFNMSRRRISTWDK*SQEPGA
Trigger: AGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTGA...TATCCTTCTCCGACTCATGTTGAAAAACCCTGCAAGAGTTGCATGGACAGAGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105601.9
ENSMUST00000129954.8
ENSMUST00000144264.8
CDS-3UTR CAA 90 bp GTCCATGCAACTCTTGCAGGGTTTTTCAACATGAGTCGGAGAAGGATATCCTGTCATGGGTCGGACTGGTaGCCATCAACGTGGGACAAG +
Preference number: 5 (lower is better)
Translates to: VHATLAGFFNMSRRRISCHGSDW*PSTWDK
Trigger: CTTGTCCCACGTTGATGGCAACCAGTCCGACCCATG...ACAGGATATCCTTCTCCGACTCATGTTGAAAAACCCTGCAAGAGTTGCATGGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
ENSMUST00000129954.8
ENSMUST00000144264.8
CDS-3UTR CAA 90 bp CGCTGTCTTCTAGCAGAGCCTGCACCTCCACACTGCTCACCAGCTCATCCCTGTTGTTGTAGTAGTCTATaGAGATCACGATCTTGCAGA +
Preference number: 5 (lower is better)
Translates to: RCLLAEPAPPHCSPAHPCCCSSL*RSRSCR
Trigger: TCTGCAAGATCGTGATCTCAATAGACTACTACAACA...ACAGGGATGAGCTGGTGAGCAGTGTGGAGGTGCAGGCTCTGCTAGAAGACAGCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CAA 90 bp GCTTTGGGCCTGATGGCCTGCAGGGGACTTGTCAAGCCTGATAGTACGAGGTGCTGTTGTAGTAGTCTATaGAGATCACGATCTTGCAGA +
Preference number: 5 (lower is better)
Translates to: ALGLMACRGLVKPDSTRCCCSSL*RSRSCR
Trigger: TCTGCAAGATCGTGATCTCAATAGACTACTACAACA...GCACCTCGTACTATCAGGCTTGACAAGTCCCCTGCAGGCCATCAGGCCCAAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154906.8
CDS-3UTR CAA 90 bp AAACCAGCGCCTCCCACAAACCCTGACAGCAACCTGATTCCAAGTAGATGGCAGAGCATGCGGACACTCTaGAGTCGTAAGATCATCAGT +
Preference number: 5 (lower is better)
Translates to: KPAPPTNPDSNLIPSRWQSMRTL*SRKIIS
Trigger: ACTGATGATCTTACGACTCAAGAGTGTCCGCATGCT...CTGCCATCTACTTGGAATCAGGTTGCTGTCAGGGTTTGTGGGAGGCGCTGGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000147171.8
CDS-3UTR CAA 90 bp CACCAAGAGTCCAGGTTAGTTGACTGTGTTGGTCTTCCTTTGGAGTTCCACAGGGGTTCAGGCAGCTGTTaGTGTAACCCAAGGCAATGC +
Preference number: 5 (lower is better)
Translates to: HQESRLVDCVGLPLEFHRGSGSC*CNPRQC
Trigger: GCATTGCCTTGGGTTACACAAACAGCTGCCTGAACC...CCTGTGGAACTCCAAAGGAAGACCAACACAGTCAACTAACCTGGACTCTTGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105604.8
CDS-3UTR CAA 90 bp AGATGCCATTCAACAACCATTGGCATGGAATGTTCTCCCACAAGCGGTTGCCACGGTTCAGGCAGCTGTTaGTGTAACCCAAGGCAATGC +
Preference number: 5 (lower is better)
Translates to: RCHSTTIGMECSPTSGCHGSGSC*CNPRQC
Trigger: GCATTGCCTTGGGTTACACAAACAGCTGCCTGAACC...GTGGCAACCGCTTGTGGGAGAACATTCCATGCCAATGGTTGTTGAATGGCATCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105605.8
CDS-3UTR CAA 90 bp CAGAGAGGAATGACTTTGAATGATGCAGGATCAGATGCTTTTCCAGGAAACCAGCATGGGTCGGACTGGTaGCCATCAACGTGGGACAAG +
Preference number: 5 (lower is better)
Translates to: QRGMTLNDAGSDAFPGNQHGSDW*PSTWDK
Trigger: CTTGTCCCACGTTGATGGCAACCAGTCCGACCCATG...CTGGTTTCCTGGAAAAGCATCTGATCCTGCATCATTCAAAGTCATTCCTCTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000152674.2
CDS-3UTR CAA 90 bp CTTCTAGCAGAGCCTGCACCTCCACACTGCTCACCAGCTCATCCCTGTGTTCAGTGTTGTAGTAGTCTATaGAGATCACGATCTTGCAGA +
Preference number: 5 (lower is better)
Translates to: LLAEPAPPHCSPAHPCVQCCSSL*RSRSCR
Trigger: TCTGCAAGATCGTGATCTCAATAGACTACTACAACA...CTGAACACAGGGATGAGCTGGTGAGCAGTGTGGAGGTGCAGGCTCTGCTAGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CAA 90 bp GCGCCTCCCACAAACCCTGACAGCAACCTGATTCCAAGTAGATGGCAGCCTCTAATCCAGTTGCAGACATaGACAATTTTGGCATTTCGG +
Preference number: 5 (lower is better)
Translates to: APPTNPDSNLIPSRWQPLIQLQT*TILAFR
Trigger: CCGAAATGCCAAAATTGTCAATGTCTGCAACTGGAT...TAGAGGCTGCCATCTACTTGGAATCAGGTTGCTGTCAGGGTTTGTGGGAGGCGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000147171.8
CDS-3UTR CAA 90 bp ATCTGGGCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGGATACAAGGAAATGGATCCAGTTGCAGACATaGACAATTTTGGCATTTCGG +
Preference number: 5 (lower is better)
Translates to: IWATLTARVGFREDTRKWIQLQT*TILAFR
Trigger: CCGAAATGCCAAAATTGTCAATGTCTGCAACTGGAT...CCATTTCCTTGTATCCTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGCCCAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR CAA 90 bp CAGGCTCAAAGACAAGGGACAGGTCACACTGGATGCTGTACACACCCTCTCTGGATCCAGTTGCAGACATaGACAATTTTGGCATTTCGG +
Preference number: 5 (lower is better)
Translates to: QAQRQGTGHTGCCTHPLWIQLQT*TILAFR
Trigger: CCGAAATGCCAAAATTGTCAATGTCTGCAACTGGAT...CCAGAGAGGGTGTGTACAGCATCCAGTGTGACCTGTCCCTTGTCTTTGAGCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
CDS-3UTR CAA 90 bp AGAGAGCTTGGGGCTCTGCTTCCATTAGAGGAAGGTCAGGTGGGTCAGGAAGGAGAAGAGAGGATCCAGTaGCAGACATTGACAATTTTG +
Preference number: 5 (lower is better)
Translates to: RELGALLPLEEGQVGQEGEERIQ*QTLTIL
Trigger: CAAAATTGTCAATGTCTGCAACTGGATCCTCTCTTC...TCCTTCCTGACCCACCTGACCTTCCTCTAATGGAAGCAGAGCCCCAAGCTCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
CDS-3UTR CAA 90 bp GGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGAGCATGCGGACACTCTaGAGTCGTAAGATCATCAGT +
Preference number: 5 (lower is better)
Translates to: GPSSGRRFLIPLSMQLLQSMRTL*SRKIIS
Trigger: ACTGATGATCTTACGACTCAAGAGTGTCCGCATGCT...CTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105601.9
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR CAA 90 bp ACAGGGATGTGCTGGAATAGAGAGCTTGGGGCTCTGCTTCCATTAGAGGAAGGTAGCATGCGGACACTCTaGAGTCGTAAGATCATCAGT +
Preference number: 5 (lower is better)
Translates to: TGMCWNRELGALLPLEEGSMRTL*SRKIIS
Trigger: ACTGATGATCTTACGACTCAAGAGTGTCCGCATGCT...ACCTTCCTCTAATGGAAGCAGAGCCCCAAGCTCTCTATTCCAGCACATCCCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078634.12
ENSMUST00000105603.2
CDS-3UTR CAA 90 bp CCTGTCTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACAGTTTTGCTGTTCGATaGTGGAGGAAGTTGGGATGC +
Preference number: 5 (lower is better)
Translates to: PVLGHHQEEGSSFLCPCNSFAVR*WRKLGC
Trigger: GCATCCCAACTTCCTCCACAATCGAACAGCAAAACT...GTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGACAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR CAA 90 bp GCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGGGAGTTTTGCTGTTCGATaGTGGAGGAAGTTGGGATGC +
Preference number: 5 (lower is better)
Translates to: AIIRKKVPHSSVHATLAGSFAVR*WRKLGC
Trigger: GCATCCCAACTTCCTCCACAATCGAACAGCAAAACT...CCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR CAA 90 bp AAGATCTGGGCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGGATACAAGGAAAGTAACTCTTCCCCTCTaGATTTCCATCTCTCTGTCT +
Preference number: 5 (lower is better)
Translates to: KIWATLTARVGFREDTRKVTLPL*ISISLS
Trigger: AGACAGAGAGATGGAAATCAAGAGGGGAAGAGTTAC...TTTCCTTGTATCCTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGCCCAGATCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147171.8
CDS-3UTR CAA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCTCAACGTGGGACAAGTaGAGCCAGGAGCCAGGTGCT +
Preference number: 5 (lower is better)
Translates to: GRHENILTPPTILLTDLISTWDK*SQEPGA
Trigger: AGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTGA...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR CAA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCCATGGGTCGGACTGGTaGCCATCAACGTGGGACAAG +
Preference number: 5 (lower is better)
Translates to: GRHENILTPPTILLTDLIHGSDW*PSTWDK
Trigger: CTTGTCCCACGTTGATGGCAACCAGTCCGACCCATG...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR CAA 90 bp GGAAGCAACATTTTCCCTCACATATTCCCTATGGAACTTTCCATAGAAGGTGACCATGGGTCGGACTGGTaGCCATCAACGTGGGACAAG +
Preference number: 5 (lower is better)
Translates to: GSNIFPHIFPMELSIEGDHGSDW*PSTWDK
Trigger: CTTGTCCCACGTTGATGGCAACCAGTCCGACCCATG...GTCACCTTCTATGGAAAGTTCCATAGGGAATATGTGAGGGAAAATGTTGCTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000152674.2
CDS-3UTR CAA 90 bp CCTCCACACTGCTCACCAGCTCATCCCTGTGTTCAGATGACATTCACCTGCCAAATCCAGTTGCAGACATaGACAATTTTGGCATTTCGG +
Preference number: 5 (lower is better)
Translates to: PPHCSPAHPCVQMTFTCQIQLQT*TILAFR
Trigger: CCGAAATGCCAAAATTGTCAATGTCTGCAACTGGAT...TTGGCAGGTGAATGTCATCTGAACACAGGGATGAGCTGGTGAGCAGTGTGGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063036.14
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CAA 90 bp GCCACGCTGACTGCCAGGGTTGGCTTCAGAGAGGATACAAGGAAATGGTATGCTATCCAGTTGCAGACATaGACAATTTTGGCATTTCGG +
Preference number: 5 (lower is better)
Translates to: ATLTARVGFREDTRKWYAIQLQT*TILAFR
Trigger: CCGAAATGCCAAAATTGTCAATGTCTGCAACTGGAT...AGCATACCATTTCCTTGTATCCTCTCTGAAGCCAACCCTGGCAGTCAGCGTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR CAA 90 bp TGTTTATTTGCACACAGTGGCATGAGAGCGGTGTCCACAGAAGCCACATTGCCAAGCATGCGGACACTCTaGAGTCGTAAGATCATCAGT +
Preference number: 5 (lower is better)
Translates to: CLFAHSGMRAVSTEATLPSMRTL*SRKIIS
Trigger: ACTGATGATCTTACGACTCAAGAGTGTCCGCATGCT...TGGCAATGTGGCTTCTGTGGACACCGCTCTCATGCCACTGTGTGCAAATAAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS CCA 90 bp TATCTTTGGTCATGGTGTTCATTGCAGCAACCAAAAGCAAGCTGGTaGTTAGTTCGATCCACTGTATTAGCCGTGGAGGGGTGTTCCCTA +
Preference number: 5 (lower is better)
Translates to: YLWSWCSLQQPKASW*LVRSTVLAVEGCSL
Trigger: TAGGGAACACCCCTCCACGGCTAATACAGTGGATCGAACTAACCACCAGCTTGCTTTTGGTTGCTGCAATGAACACCATGACCAAAGATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000144264.8
CDS-3UTR CAA 90 bp ACAGGGATGTGCTGGAATAGAGAGCTTGGGGCTCTGCTTCCATTAGAGGAAGGTATCCAGTTGCAGACATaGACAATTTTGGCATTTCGG +
Preference number: 5 (lower is better)
Translates to: TGMCWNRELGALLPLEEGIQLQT*TILAFR
Trigger: CCGAAATGCCAAAATTGTCAATGTCTGCAACTGGAT...ACCTTCCTCTAATGGAAGCAGAGCCCCAAGCTCTCTATTCCAGCACATCCCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078634.12
ENSMUST00000105603.2
CDS-3UTR CAA 90 bp AGTAGTGGCCTGCAGTCTCTTCCTTCTGAGTGCTTGACACAGTCTGAGTGTCTCGAAGAGAGGATCCAGTaGCAGACATTGACAATTTTG +
Preference number: 5 (lower is better)
Translates to: SSGLQSLPSECLTQSECLEERIQ*QTLTIL
Trigger: CAAAATTGTCAATGTCTGCAACTGGATCCTCTCTTC...GAGACACTCAGACTGTGTCAAGCACTCAGAAGGAAGAGACTGCAGGCCACTACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000147171.8
CDS-3UTR CAA 90 bp AACATGAGTCGGAGAAGGATATCCTGTAAAGATCTGGGCCACGCTGACTGCCAGGAAGAGAGGATCCAGTaGCAGACATTGACAATTTTG +
Preference number: 5 (lower is better)
Translates to: NMSRRRISCKDLGHADCQEERIQ*QTLTIL
Trigger: CAAAATTGTCAATGTCTGCAACTGGATCCTCTCTTC...CTGGCAGTCAGCGTGGCCCAGATCTTTACAGGATATCCTTCTCCGACTCATGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR CAA 90 bp CATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGGGTTAGTTTTGCTGTTCGATaGTGGAGGAAGTTGGGATGC +
Preference number: 5 (lower is better)
Translates to: HHQEEGSSFLCPCNSCRVSFAVR*WRKLGC
Trigger: GCATCCCAACTTCCTCCACAATCGAACAGCAAAACT...AACCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR CAA 90 bp GCGGTGTCCACAGAAGCCACATTGCCATGTTTAACAGGCTGTCTCTACATTGCCTCTCTGTCTGAGCTTTaGGAATGCAGACTTAGAGAA +
Preference number: 5 (lower is better)
Translates to: AVSTEATLPCLTGCLYIASLSEL*ECRLRE
Trigger: TTCTCTAAGTCTGCATTCCAAAAGCTCAGACAGAGA...GGCAATGTAGAGACAGCCTGTTAAACATGGCAATGTGGCTTCTGTGGACACCGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063036.14
CDS-3UTR CAA 90 bp GTGCAATCTATGGACCCCTGCCTGTATTTTGTGGTTGCCATGAACATTACGGGCGTAACTCTTCCCCTCTaGATTTCCATCTCTCTGTCT +
Preference number: 5 (lower is better)
Translates to: VQSMDPCLYFVVAMNITGVTLPL*ISISLS
Trigger: AGACAGAGAGATGGAAATCAAGAGGGGAAGAGTTAC...GCCCGTAATGTTCATGGCAACCACAAAATACAGGCAGGGGTCCATAGATTGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
CDS CCA 90 bp TGTCTCTTGAATGTAGGCATAGCTCTCCACATTAAAAGCTTCTGGTaGTTAGTTCGATCCACTGTATTAGCCGTGGAGGGGTGTTCCCTA +
Preference number: 5 (lower is better)
Translates to: CLLNVGIALHIKSFW*LVRSTVLAVEGCSL
Trigger: TAGGGAACACCCCTCCACGGCTAATACAGTGGATCGAACTAACCACCAGAAGCTTTTAATGTGGAGAGCTATGCCTACATTCAAGAGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154906.8
CDS CCA 90 bp AAGTGTCTCTTGAATGTAGGCATAGCTCTCCACATTAAAAGCTTCTaGTGGTTAGTTCGATCCACTGTATTAGCCGTGGAGGGGTGTTCC +
Preference number: 5 (lower is better)
Translates to: KCLLNVGIALHIKSF*WLVRSTVLAVEGCS
Trigger: GGAACACCCCTCCACGGCTAATACAGTGGATCGAACTAACCACCAGAAGCTTTTAATGTGGAGAGCTATGCCTACATTCAAGAGACACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154906.8
CDS-3UTR CAA 90 bp CTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGAAATCAACGTGGGACAAGTaGAGCCAGGAGCCAGGTGCT +
Preference number: 5 (lower is better)
Translates to: LEGTHFSTMRSYLFPLKKSTWDK*SQEPGA
Trigger: AGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTGA...TTTCTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR CAA 90 bp CTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGAAACATGGGTCGGACTGGTaGCCATCAACGTGGGACAAG +
Preference number: 5 (lower is better)
Translates to: LEGTHFSTMRSYLFPLKKHGSDW*PSTWDK
Trigger: CTTGTCCCACGTTGATGGCAACCAGTCCGACCCATG...TTTCTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR CAA 90 bp TGTTTATTTGCACACAGTGGCATGAGAGCGGTGTCCACAGAAGCCACATTGCCAGAAGAGAGGATCCAGTaGCAGACATTGACAATTTTG +
Preference number: 5 (lower is better)
Translates to: CLFAHSGMRAVSTEATLPEERIQ*QTLTIL
Trigger: CAAAATTGTCAATGTCTGCAACTGGATCCTCTCTTC...TGGCAATGTGGCTTCTGTGGACACCGCTCTCATGCCACTGTGTGCAAATAAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CAA 90 bp TGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGAAGAGAGGATCCAGTaGCAGACATTGACAATTTTG +
Preference number: 5 (lower is better)
Translates to: WAIIRKKVPHSSVHATLAEERIQ*QTLTIL
Trigger: CAAAATTGTCAATGTCTGCAACTGGATCCTCTCTTC...TGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR CAA 90 bp TCTCCAATTATCTTCCCTTCTACTCTCTGGCTGTGCAAGATCCACACTGACATGAGCATGCGGACACTCTaGAGTCGTAAGATCATCAGT +
Preference number: 5 (lower is better)
Translates to: SPIIFPSTLWLCKIHTDMSMRTL*SRKIIS
Trigger: ACTGATGATCTTACGACTCAAGAGTGTCCGCATGCT...CATGTCAGTGTGGATCTTGCACAGCCAGAGAGTAGAAGGGAAGATAATTGGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
CDS-3UTR CAA 90 bp TTTTTCAACATGAGTCGGAGAAGGATATCCTGTAAAGATCTGGGCCACGCTGACAGCATGCGGACACTCTaGAGTCGTAAGATCATCAGT +
Preference number: 5 (lower is better)
Translates to: FFNMSRRRISCKDLGHADSMRTL*SRKIIS
Trigger: ACTGATGATCTTACGACTCAAGAGTGTCCGCATGCT...GTCAGCGTGGCCCAGATCTTTACAGGATATCCTTCTCCGACTCATGTTGAAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR CAA 90 bp TCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGGGTTTTTCAAGCATGCGGACACTCTaGAGTCGTAAGATCATCAGT +
Preference number: 5 (lower is better)
Translates to: SGRRFLIPLSMQLLQGFSSMRTL*SRKIIS
Trigger: ACTGATGATCTTACGACTCAAGAGTGTCCGCATGCT...TGAAAAACCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000105601.9
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR CAA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCGGTTCAGGCAGCTGTTaGTGTAACCCAAGGCAATGC +
Preference number: 5 (lower is better)
Translates to: GRHENILTPPTILLTDLIGSGSC*CNPRQC
Trigger: GCATTGCCTTGGGTTACACAAACAGCTGCCTGAACC...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR CAA 90 bp ACTATGGAGTTAGGACAGTGTAGTGCTTCTACATCTAAAATATGTCACACCCCCGGTTCAGGCAGCTGTTaGTGTAACCCAAGGCAATGC +
Preference number: 5 (lower is better)
Translates to: TMELGQCSASTSKICHTPGSGSC*CNPRQC
Trigger: GCATTGCCTTGGGTTACACAAACAGCTGCCTGAACC...GGGGGTGTGACATATTTTAGATGTAGAAGCACTACACTGTCCTAACTCCATAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000154906.8
CDS-3UTR CAA 90 bp TCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGGGTTTTTCAAGTTTTGCTGTTCGATaGTGGAGGAAGTTGGGATGC +
Preference number: 5 (lower is better)
Translates to: SGRRFLIPLSMQLLQGFSSFAVR*WRKLGC
Trigger: GCATCCCAACTTCCTCCACAATCGAACAGCAAAACT...TGAAAAACCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR CAA 90 bp GTCCATGCAACTCTTGCAGGGTTTTTCAACATGAGTCGGAGAAGGATATCCTGTAGTTTTGCTGTTCGATaGTGGAGGAAGTTGGGATGC +
Preference number: 5 (lower is better)
Translates to: VHATLAGFFNMSRRRISCSFAVR*WRKLGC
Trigger: GCATCCCAACTTCCTCCACAATCGAACAGCAAAACT...ACAGGATATCCTTCTCCGACTCATGTTGAAAAACCCTGCAAGAGTTGCATGGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR CAA 90 bp AGGAAATGGTATGCTGTGAAAGAAGATGGCCCCCAGGCTCAAAGACAAGGGACATCTCTGTCTGAGCTTTaGGAATGCAGACTTAGAGAA +
Preference number: 5 (lower is better)
Translates to: RKWYAVKEDGPQAQRQGTSLSEL*ECRLRE
Trigger: TTCTCTAAGTCTGCATTCCAAAAGCTCAGACAGAGA...TGTCCCTTGTCTTTGAGCCTGGGGGCCATCTTCTTTCACAGCATACCATTTCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000147171.8
CDS-3UTR CAA 90 bp AGAGCGGTGTCCACAGAAGCCACATTGCCATGTTTAACAGGCTGTCTCTACATTGTAACTCTTCCCCTCTaGATTTCCATCTCTCTGTCT +
Preference number: 5 (lower is better)
Translates to: RAVSTEATLPCLTGCLYIVTLPL*ISISLS
Trigger: AGACAGAGAGATGGAAATCAAGAGGGGAAGAGTTAC...AATGTAGAGACAGCCTGTTAAACATGGCAATGTGGCTTCTGTGGACACCGCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063036.14
CDS-3UTR CAA 90 bp GAGGGTGCAATCTATGGACCCCTGCCTGTATTTTGTGGTTGCCATGAACATTACGTAACTCTTCCCCTCTaGATTTCCATCTCTCTGTCT +
Preference number: 5 (lower is better)
Translates to: EGAIYGPLPVFCGCHEHYVTLPL*ISISLS
Trigger: AGACAGAGAGATGGAAATCAAGAGGGGAAGAGTTAC...GTAATGTTCATGGCAACCACAAAATACAGGCAGGGGTCCATAGATTGCACCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
CDS TCA 90 bp ATGAAGACACAGATTTTGAGCAGGTTCTCCCAGTACCATGTGGGATaGGAGAACGTGAGGGTGCAATCTATGGACCCTTACAATCACATA +
Preference number: 5 (lower is better)
Translates to: MKTQILSRFSQYHVG*ENVRVQSMDPYNHI
Trigger: TATGTGATTGTAAGGGTCCATAGATTGCACCCTCACGTTCTCTCATCCCACATGGTACTGGGAGAACCTGCTCAAAATCTGTGTCTTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
CDS-3UTR CAA 90 bp TATGGTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTGTGTATATGCCTTTTCAACGTGGGACAAGTaGAGCCAGGAGCCAGGTGCT +
Preference number: 5 (lower is better)
Translates to: YGNKISLVCFSQFCVYAFSTWDK*SQEPGA
Trigger: AGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTGA...AAAGGCATATACACAGAACTGGGAGAAGCACACCAAAGATATTTTGTTACCATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CAA 90 bp TATGGTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTGTGTATATGCCTTTCATGGGTCGGACTGGTaGCCATCAACGTGGGACAAG +
Preference number: 5 (lower is better)
Translates to: YGNKISLVCFSQFCVYAFHGSDW*PSTWDK
Trigger: CTTGTCCCACGTTGATGGCAACCAGTCCGACCCATG...AAAGGCATATACACAGAACTGGGAGAAGCACACCAAAGATATTTTGTTACCATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CAA 90 bp GACCTCCTTAAGGATCTAAATCTTAGACTGGTATCAGGTGCTGTGTTTTTATATCATGGGTCGGACTGGTaGCCATCAACGTGGGACAAG +
Preference number: 5 (lower is better)
Translates to: DLLKDLNLRLVSGAVFLYHGSDW*PSTWDK
Trigger: CTTGTCCCACGTTGATGGCAACCAGTCCGACCCATG...ATATAAAAACACAGCACCTGATACCAGTCTAAGATTTAGATCCTTAAGGAGGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105602.8
CDS-3UTR CAA 90 bp TCTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTTCTCCCATGGGTCGGACTGGTaGCCATCAACGTGGGACAAG +
Preference number: 5 (lower is better)
Translates to: SLWLHLPYGNKISLVCFSHGSDW*PSTWDK
Trigger: CTTGTCCCACGTTGATGGCAACCAGTCCGACCCATG...GGAGAAGCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CAA 90 bp CTGTCTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTTGTTGTAGTAGTCTATaGAGATCACGATCTTGCAGA +
Preference number: 5 (lower is better)
Translates to: LSWAIIRKKVPHSSVHATCCSSL*RSRSCR
Trigger: TCTGCAAGATCGTGATCTCAATAGACTACTACAACA...AGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR CAA 90 bp CATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGGGTTATCCAGTTGCAGACATaGACAATTTTGGCATTTCGG +
Preference number: 5 (lower is better)
Translates to: HHQEEGSSFLCPCNSCRVIQLQT*TILAFR
Trigger: CCGAAATGCCAAAATTGTCAATGTCTGCAACTGGAT...AACCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR CAA 90 bp GGGTTTTTCAACATGAGTCGGAGAAGGATATCCTGTAAAGATCTGGGCCACGCTATCCAGTTGCAGACATaGACAATTTTGGCATTTCGG +
Preference number: 5 (lower is better)
Translates to: GFFNMSRRRISCKDLGHAIQLQT*TILAFR
Trigger: CCGAAATGCCAAAATTGTCAATGTCTGCAACTGGAT...AGCGTGGCCCAGATCTTTACAGGATATCCTTCTCCGACTCATGTTGAAAAACCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR CAA 90 bp GCCATGTTTAACAGGCTGTCTCTACATTGCCAAGTCATTCGTATGAAAACACGCAGCATGCGGACACTCTaGAGTCGTAAGATCATCAGT +
Preference number: 5 (lower is better)
Translates to: AMFNRLSLHCQVIRMKTRSMRTL*SRKIIS
Trigger: ACTGATGATCTTACGACTCAAGAGTGTCCGCATGCT...GCGTGTTTTCATACGAATGACTTGGCAATGTAGAGACAGCCTGTTAAACATGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CAA 90 bp AGCCACATTGCCATGTTTAACAGGCTGTCTCTACATTGCCAAGTCATTCGTATGAGCATGCGGACACTCTaGAGTCGTAAGATCATCAGT +
Preference number: 5 (lower is better)
Translates to: SHIAMFNRLSLHCQVIRMSMRTL*SRKIIS
Trigger: ACTGATGATCTTACGACTCAAGAGTGTCCGCATGCT...CATACGAATGACTTGGCAATGTAGAGACAGCCTGTTAAACATGGCAATGTGGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CAA 90 bp CAGGCTGTCTCTACATTGCCAAGTCATTCGTATGAAAACACGCAATACGGCAAAAGTTTTGCTGTTCGATaGTGGAGGAAGTTGGGATGC +
Preference number: 5 (lower is better)
Translates to: QAVSTLPSHSYENTQYGKSFAVR*WRKLGC
Trigger: GCATCCCAACTTCCTCCACAATCGAACAGCAAAACT...TTTGCCGTATTGCGTGTTTTCATACGAATGACTTGGCAATGTAGAGACAGCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CAA 90 bp GAATCTGAAGGGCAGCTATGTTTAAAACAGGGATGTGCTGGAATAGAGAGCTTGAGTTTTGCTGTTCGATaGTGGAGGAAGTTGGGATGC +
Preference number: 5 (lower is better)
Translates to: ESEGQLCLKQGCAGIESLSFAVR*WRKLGC
Trigger: GCATCCCAACTTCCTCCACAATCGAACAGCAAAACT...CAAGCTCTCTATTCCAGCACATCCCTGTTTTAAACATAGCTGCCCTTCAGATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
CDS-3UTR CAA 90 bp ACAGAAGCCACATTGCCATGTTTAACAGGCTGTCTCTACATTGCCAAGTCATTCAGTTTTGCTGTTCGATaGTGGAGGAAGTTGGGATGC +
Preference number: 5 (lower is better)
Translates to: TEATLPCLTGCLYIAKSFSFAVR*WRKLGC
Trigger: GCATCCCAACTTCCTCCACAATCGAACAGCAAAACT...GAATGACTTGGCAATGTAGAGACAGCCTGTTAAACATGGCAATGTGGCTTCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CAA 90 bp ATGAACATTACGGGCAGACCAATGGCAGAAGAGAGGATCCAGTTGCAGACATTGTCTCTGTCTGAGCTTTaGGAATGCAGACTTAGAGAA +
Preference number: 5 (lower is better)
Translates to: MNITGRPMAEERIQLQTLSLSEL*ECRLRE
Trigger: TTCTCTAAGTCTGCATTCCAAAAGCTCAGACAGAGA...CAATGTCTGCAACTGGATCCTCTCTTCTGCCATTGGTCTGCCCGTAATGTTCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
CDS-3UTR CAA 90 bp TCTCTGCTCCAGTTTCTGCTTGTAGGTTTGTGTCTTGAGTTCCTTCTTTGGCTTTGGTCATGGTGTTCATaGCAGCAACCAAAAGCAAGC +
Preference number: 5 (lower is better)
Translates to: SLLQFLLVGLCLEFLLWLWSWCS*QQPKAS
Trigger: GCTTGCTTTTGGTTGCTGCAATGAACACCATGACCA...AAGCCAAAGAAGGAACTCAAGACACAAACCTACAAGCAGAAACTGGAGCAGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144264.8
CDS-3UTR CAA 90 bp TGCCCAAGATTTGAAGCTCAGTTTAGGGTAGATAGCTTCAAATTTCATTATCTACATGGGTCGGACTGGTaGCCATCAACGTGGGACAAG +
Preference number: 5 (lower is better)
Translates to: CPRFEAQFRVDSFKFHYLHGSDW*PSTWDK
Trigger: CTTGTCCCACGTTGATGGCAACCAGTCCGACCCATG...TAGATAATGAAATTTGAAGCTATCTACCCTAAACTGAGCTTCAAATCTTGGGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
CDS-3UTR CAA 90 bp TCTCTAGTAAGCTCTCTATTTGTTTTGTATTTCAGTGTTCAGGAAACCTTGTCTCATGGGTCGGACTGGTaGCCATCAACGTGGGACAAG +
Preference number: 5 (lower is better)
Translates to: SLVSSLFVLYFSVQETLSHGSDW*PSTWDK
Trigger: CTTGTCCCACGTTGATGGCAACCAGTCCGACCCATG...AGACAAGGTTTCCTGAACACTGAAATACAAAACAAATAGAGAGCTTACTAGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105604.8
CDS-3UTR CAA 90 bp ATCTTTGGTGTGCTTCTCCCAGTTCTGTGTATATGCCTTTTCAAAATAAATCTACATGGGTCGGACTGGTaGCCATCAACGTGGGACAAG +
Preference number: 5 (lower is better)
Translates to: IFGVLLPVLCICLFKINLHGSDW*PSTWDK
Trigger: CTTGTCCCACGTTGATGGCAACCAGTCCGACCCATG...TAGATTTATTTTGAAAAGGCATATACACAGAACTGGGAGAAGCACACCAAAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092729.11
ENSMUST00000154906.8
CDS-3UTR CAA 90 bp CCTCTGGCTGCTCCTCTGCAGGACTTGGTAGTGAATCCTTTTTATGTGACTCCTGTGGCAGTCTTCATTTaGGTATATCTTACAATCACA +
Preference number: 5 (lower is better)
Translates to: PLAAPLQDLVVNPFYVTPVAVFI*VYLTIT
Trigger: TGTGATTGTAAGATATACCAAAATGAAGACTGCCAC...AGGAGTCACATAAAAAGGATTCACTACCAAGTCCTGCAGAGGAGCAGCCAGAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105603.2
CDS-3UTR CAA 90 bp CTGTCTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTGTGGCAGTCTTCATTTaGGTATATCTTACAATCACA +
Preference number: 5 (lower is better)
Translates to: LSWAIIRKKVPHSSVHATVAVFI*VYLTIT
Trigger: TGTGATTGTAAGATATACCAAAATGAAGACTGCCAC...AGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR CAA 90 bp TGTTTATTTGCACACAGTGGCATGAGAGCGGTGTCCACAGAAGCCACATTGCCAGTGGCAGTCTTCATTTaGGTATATCTTACAATCACA +
Preference number: 5 (lower is better)
Translates to: CLFAHSGMRAVSTEATLPVAVFI*VYLTIT
Trigger: TGTGATTGTAAGATATACCAAAATGAAGACTGCCAC...TGGCAATGTGGCTTCTGTGGACACCGCTCTCATGCCACTGTGTGCAAATAAACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CAA 90 bp GGATTCCTGTCTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGTGGCAGTCTTCATTTaGGTATATCTTACAATCACA +
Preference number: 5 (lower is better)
Translates to: GFLSWAIIRKKVPHSSVHVAVFI*VYLTIT
Trigger: TGTGATTGTAAGATATACCAAAATGAAGACTGCCAC...ATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGACAGGAATCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR CAA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCAGCATGCGGACACTCTaGAGTCGTAAGATCATCAGT +
Preference number: 5 (lower is better)
Translates to: GRHENILTPPTILLTDLISMRTL*SRKIIS
Trigger: ACTGATGATCTTACGACTCAAGAGTGTCCGCATGCT...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR CAA 90 bp TCCCACCATCTTGCTCACCGATTTAATCTACTCATTCCATTACTGAAGTGTGAGAGCATGCGGACACTCTaGAGTCGTAAGATCATCAGT +
Preference number: 5 (lower is better)
Translates to: SHHLAHRFNLLIPLLKCESMRTL*SRKIIS
Trigger: ACTGATGATCTTACGACTCAAGAGTGTCCGCATGCT...CTCACACTTCAGTAATGGAATGAGTAGATTAAATCGGTGAGCAAGATGGTGGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105604.8
CDS-3UTR CAA 90 bp TATCTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGGGTTCAGGCAGCTGTTaGTGTAACCCAAGGCAATGC +
Preference number: 5 (lower is better)
Translates to: YLEGTHFSTMRSYLFPLKGSGSC*CNPRQC
Trigger: GCATTGCCTTGGGTTACACAAACAGCTGCCTGAACC...CTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAGATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR CAA 90 bp AACACGCAATACGGCAAACCAGACAATACATTAGACATTACACTTACAACTCCTGGTTCAGGCAGCTGTTaGTGTAACCCAAGGCAATGC +
Preference number: 5 (lower is better)
Translates to: NTQYGKPDNTLDITLTTPGSGSC*CNPRQC
Trigger: GCATTGCCTTGGGTTACACAAACAGCTGCCTGAACC...AGGAGTTGTAAGTGTAATGTCTAATGTATTGTCTGGTTTGCCGTATTGCGTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CAA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCAGTTTTGCTGTTCGATaGTGGAGGAAGTTGGGATGC +
Preference number: 5 (lower is better)
Translates to: GRHENILTPPTILLTDLISFAVR*WRKLGC
Trigger: GCATCCCAACTTCCTCCACAATCGAACAGCAAAACT...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR CAA 90 bp TGCCAGGAAACAGTCTGGAAAGTGGTTTCTGGAATCGTGATCAGTGCTTTGATGTCTCTGTCTGAGCTTTaGGAATGCAGACTTAGAGAA +
Preference number: 5 (lower is better)
Translates to: CQETVWKVVSGIVISALMSLSEL*ECRLRE
Trigger: TTCTCTAAGTCTGCATTCCAAAAGCTCAGACAGAGA...CATCAAAGCACTGATCACGATTCCAGAAACCACTTTCCAGACTGTTTCCTGGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105597.8
ENSMUST00000150374.8
CDS-3UTR CAA 90 bp CTGTCTTGGGCCATCATCAGGAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTTGTTTTTGTTTTCTCTaGTTTCTGGTGGTTAGTTCG +
Preference number: 5 (lower is better)
Translates to: LSWAIIRKKVPHSSVHATCFCFL*FLVVSS
Trigger: CGAACTAACCACCAGAAACAAGAGAAAACAAAAACA...AGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGACAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000129221.8
CDS TCA 90 bp ATAACCAGGATGGTAAGGGATAGACATCTGCATTTCAGGCATTCTTaGGGTTTTTGGTGTGCCTGGTGGTTAGTTCGATCCACTGTATTA +
Preference number: 5 (lower is better)
Translates to: ITRMVRDRHLHFRHS*GFWCAWWLVRSTVL
Trigger: TAATACAGTGGATCGAACTAACCACCAGGCACACCAAAAACCTCAAGAATGCCTGAAATGCAGATGTCTATCCCTTACCATCCTGGTTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR CAA 90 bp ATTCCTGCTCAGAATGGTGGCATGATGAGCTTACTGGGTGACTCTGAGTTTGACGTGGCAGTCTTCATTTaGGTATATCTTACAATCACA +
Preference number: 5 (lower is better)
Translates to: IPAQNGGMMSLLGDSEFDVAVFI*VYLTIT
Trigger: TGTGATTGTAAGATATACCAAAATGAAGACTGCCAC...GTCAAACTCAGAGTCACCCAGTAAGCTCATCATGCCACCATTCTGAGCAGGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105607.8
CDS-3UTR CAA 90 bp TTTTTCAACATGAGTCGGAGAAGGATATCCTGTAAAGATCTGGGCCACGCTGACTGTTGTAGTAGTCTATaGAGATCACGATCTTGCAGA +
Preference number: 5 (lower is better)
Translates to: FFNMSRRRISCKDLGHADCCSSL*RSRSCR
Trigger: TCTGCAAGATCGTGATCTCAATAGACTACTACAACA...GTCAGCGTGGCCCAGATCTTTACAGGATATCCTTCTCCGACTCATGTTGAAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000147171.8
ENSMUST00000154941.8
CDS-3UTR CAA 90 bp TCTTCTGGTCATGAAGAGATGCCATTCAACAACCATTGGCATGGAATGTTCTCCATCCAGTTGCAGACATaGACAATTTTGGCATTTCGG +
Preference number: 5 (lower is better)
Translates to: SSGHEEMPFNNHWHGMFSIQLQT*TILAFR
Trigger: CCGAAATGCCAAAATTGTCAATGTCTGCAACTGGAT...GGAGAACATTCCATGCCAATGGTTGTTGAATGGCATCTCTTCATGACCAGAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105605.8
CDS-3UTR CAA 90 bp GCCATGTTTAACAGGCTGTCTCTACATTGCCAAGTCATTCGTATGAAAACACGCGAAGAGAGGATCCAGTaGCAGACATTGACAATTTTG +
Preference number: 5 (lower is better)
Translates to: AMFNRLSLHCQVIRMKTREERIQ*QTLTIL
Trigger: CAAAATTGTCAATGTCTGCAACTGGATCCTCTCTTC...GCGTGTTTTCATACGAATGACTTGGCAATGTAGAGACAGCCTGTTAAACATGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CAA 90 bp GAAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGGGTTTTTCAACATGAAGAGAGGATCCAGTaGCAGACATTGACAATTTTG +
Preference number: 5 (lower is better)
Translates to: EEGSSFLCPCNSCRVFQHEERIQ*QTLTIL
Trigger: CAAAATTGTCAATGTCTGCAACTGGATCCTCTCTTC...ATGTTGAAAAACCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR CAA 90 bp CCATATGGTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTGTGTATATGCCAGCATGCGGACACTCTaGAGTCGTAAGATCATCAGT +
Preference number: 5 (lower is better)
Translates to: PYGNKISLVCFSQFCVYASMRTL*SRKIIS
Trigger: ACTGATGATCTTACGACTCAAGAGTGTCCGCATGCT...GGCATATACACAGAACTGGGAGAAGCACACCAAAGATATTTTGTTACCATATGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CAA 90 bp AGTCATTCGTATGAAAACACGCAATACGGCAAACCAGACAATACATTAGACATTGGTTCAGGCAGCTGTTaGTGTAACCCAAGGCAATGC +
Preference number: 5 (lower is better)
Translates to: SHSYENTQYGKPDNTLDIGSGSC*CNPRQC
Trigger: GCATTGCCTTGGGTTACACAAACAGCTGCCTGAACC...AATGTCTAATGTATTGTCTGGTTTGCCGTATTGCGTGTTTTCATACGAATGACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CAA 90 bp TCTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTTCTCCGGTTCAGGCAGCTGTTaGTGTAACCCAAGGCAATGC +
Preference number: 5 (lower is better)
Translates to: SLWLHLPYGNKISLVCFSGSGSC*CNPRQC
Trigger: GCATTGCCTTGGGTTACACAAACAGCTGCCTGAACC...GGAGAAGCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CAA 90 bp GACCTCCTTAAGGATCTAAATCTTAGACTGGTATCAGGTGCTGTGTTTTTATATGGTTCAGGCAGCTGTTaGTGTAACCCAAGGCAATGC +
Preference number: 5 (lower is better)
Translates to: DLLKDLNLRLVSGAVFLYGSGSC*CNPRQC
Trigger: GCATTGCCTTGGGTTACACAAACAGCTGCCTGAACC...ATATAAAAACACAGCACCTGATACCAGTCTAAGATTTAGATCCTTAAGGAGGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105602.8
CDS-3UTR CAA 90 bp GAGATACAGAGGCAATTCCATGTGGCTCCTACTTACAATCACATACATGACCAGTCTCTGTCTGAGCTTTaGGAATGCAGACTTAGAGAA +
Preference number: 5 (lower is better)
Translates to: EIQRQFHVAPTYNHIHDQSLSEL*ECRLRE
Trigger: TTCTCTAAGTCTGCATTCCAAAAGCTCAGACAGAGA...CTGGTCATGTATGTGATTGTAAGTAGGAGCCACATGGAATTGCCTCTGTATCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
CDS-3UTR CAA 90 bp GGAAGCAACATTTTCCCTCACATATTCCCTATGGAACTTTCCATAGAAGGTGACGGTCAGGATGGGCAATaGCATGCTTACAATCACATA +
Preference number: 5 (lower is better)
Translates to: GSNIFPHIFPMELSIEGDGQDGQ*HAYNHI
Trigger: TATGTGATTGTAAGCATGCAATTGCCCATCCTGACC...GTCACCTTCTATGGAAAGTTCCATAGGGAATATGTGAGGGAAAATGTTGCTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152674.2
CDS-3UTR CAA 90 bp TCTCCAATTATCTTCCCTTCTACTCTCTGGCTGTGCAAGATCCACACTGACATGGTGGCAGTCTTCATTTaGGTATATCTTACAATCACA +
Preference number: 5 (lower is better)
Translates to: SPIIFPSTLWLCKIHTDMVAVFI*VYLTIT
Trigger: TGTGATTGTAAGATATACCAAAATGAAGACTGCCAC...CATGTCAGTGTGGATCTTGCACAGCCAGAGAGTAGAAGGGAAGATAATTGGAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
CDS-3UTR CAA 90 bp CTGTCTCTACATTGCCAAGTCATTCGTATGAAAACACGCAATACGGCAAACCAGTGTTGTAGTAGTCTATaGAGATCACGATCTTGCAGA +
Preference number: 5 (lower is better)
Translates to: LSLHCQVIRMKTRNTANQCCSSL*RSRSCR
Trigger: TCTGCAAGATCGTGATCTCAATAGACTACTACAACA...CTGGTTTGCCGTATTGCGTGTTTTCATACGAATGACTTGGCAATGTAGAGACAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CAA 90 bp AAGAAGGTTCCTCATTCCTCTGTCCATGCAACTCTTGCAGGGTTTTTCAACATGTGTTGTAGTAGTCTATaGAGATCACGATCTTGCAGA +
Preference number: 5 (lower is better)
Translates to: KKVPHSSVHATLAGFFNMCCSSL*RSRSCR
Trigger: TCTGCAAGATCGTGATCTCAATAGACTACTACAACA...CATGTTGAAAAACCCTGCAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000129221.8
ENSMUST00000129954.8
ENSMUST00000144264.8
ENSMUST00000154941.8
CDS-3UTR CAA 90 bp CAGAGAGGAATGACTTTGAATGATGCAGGATCAGATGCTTTTCCAGGAAACCAGTGTTGTAGTAGTCTATaGAGATCACGATCTTGCAGA +
Preference number: 5 (lower is better)
Translates to: QRGMTLNDAGSDAFPGNQCCSSL*RSRSCR
Trigger: TCTGCAAGATCGTGATCTCAATAGACTACTACAACA...CTGGTTTCCTGGAAAAGCATCTGATCCTGCATCATTCAAAGTCATTCCTCTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105607.8
ENSMUST00000147171.8
CDS-3UTR CAA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCATCCAGTTGCAGACATaGACAATTTTGGCATTTCGG +
Preference number: 5 (lower is better)
Translates to: GRHENILTPPTILLTDLIIQLQT*TILAFR
Trigger: CCGAAATGCCAAAATTGTCAATGTCTGCAACTGGAT...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR CAA 90 bp GTTAGAGAATCTGAAGGGCAGCTATGTTTAAAACAGGGATGTGCTGGAATAGAGGAAGAGAGGATCCAGTaGCAGACATTGACAATTTTG +
Preference number: 5 (lower is better)
Translates to: VRESEGQLCLKQGCAGIEEERIQ*QTLTIL
Trigger: CAAAATTGTCAATGTCTGCAACTGGATCCTCTCTTC...CTCTATTCCAGCACATCCCTGTTTTAAACATAGCTGCCCTTCAGATTCTCTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
CDS-3UTR CAA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCGAAGAGAGGATCCAGTaGCAGACATTGACAATTTTG +
Preference number: 5 (lower is better)
Translates to: GRHENILTPPTILLTDLIEERIQ*QTLTIL
Trigger: CAAAATTGTCAATGTCTGCAACTGGATCCTCTCTTC...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR CAA 90 bp ATAGATAGTCTAGGTGGTATAAGAAAACATGCTGAGCAAGCCATGGAGAGCCAAGAAGAGAGGATCCAGTaGCAGACATTGACAATTTTG +
Preference number: 5 (lower is better)
Translates to: IDSLGGIRKHAEQAMESQEERIQ*QTLTIL
Trigger: CAAAATTGTCAATGTCTGCAACTGGATCCTCTCTTC...TTGGCTCTCCATGGCTTGCTCAGCATGTTTTCTTATACCACCTAGACTATCTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CAA 90 bp CTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGAAAAGCATGCGGACACTCTaGAGTCGTAAGATCATCAGT +
Preference number: 5 (lower is better)
Translates to: LEGTHFSTMRSYLFPLKKSMRTL*SRKIIS
Trigger: ACTGATGATCTTACGACTCAAGAGTGTCCGCATGCT...TTTCTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR CAA 90 bp CTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGAAAAGTTTTGCTGTTCGATaGTGGAGGAAGTTGGGATGC +
Preference number: 5 (lower is better)
Translates to: LEGTHFSTMRSYLFPLKKSFAVR*WRKLGC
Trigger: GCATCCCAACTTCCTCCACAATCGAACAGCAAAACT...TTTCTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR CAA 90 bp CTCTGCTCTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCAGTTTTGCTGTTCGATaGTGGAGGAAGTTGGGATGC +
Preference number: 5 (lower is better)
Translates to: LCSLWLHLPYGNKISLVCSFAVR*WRKLGC
Trigger: GCATCCCAACTTCCTCCACAATCGAACAGCAAAACT...GCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAGAGCAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CAA 90 bp GTTGATCACAATTCACATACCACAGAGTATTGTGGTCCATTGGATGTTTCTGTAAGTTTTGCTGTTCGATaGTGGAGGAAGTTGGGATGC +
Preference number: 5 (lower is better)
Translates to: VDHNSHTTEYCGPLDVSVSFAVR*WRKLGC
Trigger: GCATCCCAACTTCCTCCACAATCGAACAGCAAAACT...TACAGAAACATCCAATGGACCACAATACTCTGTGGTATGTGAATTGTGATCAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105607.8
CDS-3UTR CAA 90 bp TATCTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGGCATTCTTGAGGTTTTaGGTGTGCCTGGTGGTTAGT +
Preference number: 5 (lower is better)
Translates to: YLEGTHFSTMRSYLFPLKAFLRF*VCLVVS
Trigger: ACTAACCACCAGGCACACCAAAAACCTCAAGAATGC...CTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAGATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR CAA 90 bp TATCTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGGCATTTCAGGCATTCTaGAGGTTTTTGGTGTGCCTG +
Preference number: 5 (lower is better)
Translates to: YLEGTHFSTMRSYLFPLKAFQAF*RFLVCL
Trigger: CAGGCACACCAAAAACCTCAAGAATGCCTGAAATGC...CTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAGATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR CAA 90 bp CAGTCTTCATTTTGGTATATCCTTAATTACTGGCTAAGGGTGGTCAGGAATGCAGTAACTCTTCCCCTCTaGATTTCCATCTCTCTGTCT +
Preference number: 5 (lower is better)
Translates to: QSSFWYILNYWLRVVRNAVTLPL*ISISLS
Trigger: AGACAGAGAGATGGAAATCAAGAGGGGAAGAGTTAC...TGCATTCCTGACCACCCTTAGCCAGTAATTAAGGATATACCAAAATGAAGACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
CDS-3UTR CAA 90 bp ACAGAAGCCACATTGCCATGTTTAACAGGCTGTCTCTACATTGCCAAGTCATTCGTGGCAGTCTTCATTTaGGTATATCTTACAATCACA +
Preference number: 5 (lower is better)
Translates to: TEATLPCLTGCLYIAKSFVAVFI*VYLTIT
Trigger: TGTGATTGTAAGATATACCAAAATGAAGACTGCCAC...GAATGACTTGGCAATGTAGAGACAGCCTGTTAAACATGGCAATGTGGCTTCTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CAA 90 bp GTTAGAGAATCTGAAGGGCAGCTATGTTTAAAACAGGGATGTGCTGGAATAGAGTGTTGTAGTAGTCTATaGAGATCACGATCTTGCAGA +
Preference number: 5 (lower is better)
Translates to: VRESEGQLCLKQGCAGIECCSSL*RSRSCR
Trigger: TCTGCAAGATCGTGATCTCAATAGACTACTACAACA...CTCTATTCCAGCACATCCCTGTTTTAAACATAGCTGCCCTTCAGATTCTCTAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078634.12
CDS-3UTR CAA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCTGTTGTAGTAGTCTATaGAGATCACGATCTTGCAGA +
Preference number: 5 (lower is better)
Translates to: GRHENILTPPTILLTDLICCSSL*RSRSCR
Trigger: TCTGCAAGATCGTGATCTCAATAGACTACTACAACA...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR CAA 90 bp TCTGCTCTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTAGCATGCGGACACTCTaGAGTCGTAAGATCATCAGT +
Preference number: 5 (lower is better)
Translates to: SALYGYICHMVTKYLWCASMRTL*SRKIIS
Trigger: ACTGATGATCTTACGACTCAAGAGTGTCCGCATGCT...AGCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAGAGCAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CAA 90 bp GACCTCCTTAAGGATCTAAATCTTAGACTGGTATCAGGTGCTGTGTTTTTATATAGCATGCGGACACTCTaGAGTCGTAAGATCATCAGT +
Preference number: 5 (lower is better)
Translates to: DLLKDLNLRLVSGAVFLYSMRTL*SRKIIS
Trigger: ACTGATGATCTTACGACTCAAGAGTGTCCGCATGCT...ATATAAAAACACAGCACCTGATACCAGTCTAAGATTTAGATCCTTAAGGAGGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105602.8
CDS-3UTR CAA 90 bp TCTGCTCTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTAGTTTTGCTGTTCGATaGTGGAGGAAGTTGGGATGC +
Preference number: 5 (lower is better)
Translates to: SALYGYICHMVTKYLWCASFAVR*WRKLGC
Trigger: GCATCCCAACTTCCTCCACAATCGAACAGCAAAACT...AGCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAGAGCAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CAA 90 bp GACCTCCTTAAGGATCTAAATCTTAGACTGGTATCAGGTGCTGTGTTTTTATATAGTTTTGCTGTTCGATaGTGGAGGAAGTTGGGATGC +
Preference number: 5 (lower is better)
Translates to: DLLKDLNLRLVSGAVFLYSFAVR*WRKLGC
Trigger: GCATCCCAACTTCCTCCACAATCGAACAGCAAAACT...ATATAAAAACACAGCACCTGATACCAGTCTAAGATTTAGATCCTTAAGGAGGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105602.8
CDS-3UTR CAA 90 bp CTCTGCTCTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCATAGCCAAGTGTCTCTaGAATGTAGGCATAGCTCTC +
Preference number: 5 (lower is better)
Translates to: LCSLWLHLPYGNKISLVCIAKCL*NVGIAL
Trigger: GAGAGCTATGCCTACATTCAAGAGACACTTGGCTAT...GCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAGAGCAGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154906.8
CDS-3UTR CAA 90 bp GGAAGGCATGAAAATATTTTGACTCCTCCCACCATCTTGCTCACCGATTTAATCGTGGCAGTCTTCATTTaGGTATATCTTACAATCACA +
Preference number: 5 (lower is better)
Translates to: GRHENILTPPTILLTDLIVAVFI*VYLTIT
Trigger: TGTGATTGTAAGATATACCAAAATGAAGACTGCCAC...GATTAAATCGGTGAGCAAGATGGTGGGAGGAGTCAAAATATTTTCATGCCTTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092731.11
ENSMUST00000105604.8
CDS-3UTR CAA 90 bp GAAGCACAAGCTCTGCTTCCAGAGAGAGTTTTAGTATTTTGTGTGTCTGTGGATGTGGCAGTCTTCATTTaGGTATATCTTACAATCACA +
Preference number: 5 (lower is better)
Translates to: EAQALLPERVLVFCVSVDVAVFI*VYLTIT
Trigger: TGTGATTGTAAGATATACCAAAATGAAGACTGCCAC...ATCCACAGACACACAAAATACTAAAACTCTCTCTGGAAGCAGAGCTTGTGCTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154906.8
CDS-3UTR CAA 90 bp ACTGTGTTGGTCTTCCTTTGGAGTTCCACAGGAAGGCATGAAAATATTTTGACTTGTTGTAGTAGTCTATaGAGATCACGATCTTGCAGA +
Preference number: 5 (lower is better)
Translates to: TVLVFLWSSTGRHENILTCCSSL*RSRSCR
Trigger: TCTGCAAGATCGTGATCTCAATAGACTACTACAACA...AGTCAAAATATTTTCATGCCTTCCTGTGGAACTCCAAAGGAAGACCAACACAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105604.8
CDS-3UTR CAA 90 bp CATAGGGAAGGGTCACCTTCTATGTTGATCACAATTCACATACCACAGAGTATTTGTTGTAGTAGTCTATaGAGATCACGATCTTGCAGA +
Preference number: 5 (lower is better)
Translates to: HREGSPSMLITIHIPQSICCSSL*RSRSCR
Trigger: TCTGCAAGATCGTGATCTCAATAGACTACTACAACA...AATACTCTGTGGTATGTGAATTGTGATCAACATAGAAGGTGACCCTTCCCTATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105607.8
CDS-3UTR CAA 90 bp CTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGAAAATCCAGTTGCAGACATaGACAATTTTGGCATTTCGG +
Preference number: 5 (lower is better)
Translates to: LEGTHFSTMRSYLFPLKKIQLQT*TILAFR
Trigger: CCGAAATGCCAAAATTGTCAATGTCTGCAACTGGAT...TTTCTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR CAA 90 bp ATGTTTAACAGGCTGTCTCTACATTGCCAAGTCATTCGTATGAAAACACGCAATATCCAGTTGCAGACATaGACAATTTTGGCATTTCGG +
Preference number: 5 (lower is better)
Translates to: MFNRLSLHCQVIRMKTRNIQLQT*TILAFR
Trigger: CCGAAATGCCAAAATTGTCAATGTCTGCAACTGGAT...ATTGCGTGTTTTCATACGAATGACTTGGCAATGTAGAGACAGCCTGTTAAACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CAA 90 bp TATCTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGGAAGAGAGGATCCAGTaGCAGACATTGACAATTTTG +
Preference number: 5 (lower is better)
Translates to: YLEGTHFSTMRSYLFPLKEERIQ*QTLTIL
Trigger: CAAAATTGTCAATGTCTGCAACTGGATCCTCTCTTC...CTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAGATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR CAA 90 bp TTCTCTAGTAAGCTCTCTATTTGTTTTGTATTTCAGTGTTCAGGAAACCTTGTCAGTTTTGCTGTTCGATaGTGGAGGAAGTTGGGATGC +
Preference number: 5 (lower is better)
Translates to: FSSKLSICFVFQCSGNLVSFAVR*WRKLGC
Trigger: GCATCCCAACTTCCTCCACAATCGAACAGCAAAACT...GACAAGGTTTCCTGAACACTGAAATACAAAACAAATAGAGAGCTTACTAGAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105604.8
CDS-3UTR CAA 90 bp ATCTTTGGTGTGCTTCTCCCAGTTCTGTGTATATGCCTTTTCAAAATAAATCTAAGTTTTGCTGTTCGATaGTGGAGGAAGTTGGGATGC +
Preference number: 5 (lower is better)
Translates to: IFGVLLPVLCICLFKINLSFAVR*WRKLGC
Trigger: GCATCCCAACTTCCTCCACAATCGAACAGCAAAACT...TAGATTTATTTTGAAAAGGCATATACACAGAACTGGGAGAAGCACACCAAAGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000092729.11
ENSMUST00000154906.8
CDS-3UTR CAA 90 bp TCTTCATGTAAGGTGACTAGGTGCTTCCTAAGGAAGTTCCTTGTTTATTTGCACGTGGCAGTCTTCATTTaGGTATATCTTACAATCACA +
Preference number: 5 (lower is better)
Translates to: SSCKVTRCFLRKFLVYLHVAVFI*VYLTIT
Trigger: TGTGATTGTAAGATATACCAAAATGAAGACTGCCAC...GTGCAAATAAACAAGGAACTTCCTTAGGAAGCACCTAGTCACCTTACATGAAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CAA 90 bp CTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGAAATGTTGTAGTAGTCTATaGAGATCACGATCTTGCAGA +
Preference number: 5 (lower is better)
Translates to: LEGTHFSTMRSYLFPLKKCCSSL*RSRSCR
Trigger: TCTGCAAGATCGTGATCTCAATAGACTACTACAACA...TTTCTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR CAA 90 bp CTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTTCTCCCAGTGTTGTAGTAGTCTATaGAGATCACGATCTTGCAGA +
Preference number: 5 (lower is better)
Translates to: LWLHLPYGNKISLVCFSQCCSSL*RSRSCR
Trigger: TCTGCAAGATCGTGATCTCAATAGACTACTACAACA...CTGGGAGAAGCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CAA 90 bp GACCTCCTTAAGGATCTAAATCTTAGACTGGTATCAGGTGCTGTGTTTTTATATATCCAGTTGCAGACATaGACAATTTTGGCATTTCGG +
Preference number: 5 (lower is better)
Translates to: DLLKDLNLRLVSGAVFLYIQLQT*TILAFR
Trigger: CCGAAATGCCAAAATTGTCAATGTCTGCAACTGGAT...ATATAAAAACACAGCACCTGATACCAGTCTAAGATTTAGATCCTTAAGGAGGTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105602.8
CDS-3UTR CAA 90 bp TTGTTTTGTATTTCAGTGTTCAGGAAACCTTGTCTAATCAGTCCGTTCATTCACATCCAGTTGCAGACATaGACAATTTTGGCATTTCGG +
Preference number: 5 (lower is better)
Translates to: LFCISVFRKPCLISPFIHIQLQT*TILAFR
Trigger: CCGAAATGCCAAAATTGTCAATGTCTGCAACTGGAT...GTGAATGAACGGACTGATTAGACAAGGTTTCCTGAACACTGAAATACAAAACAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105604.8
CDS-3UTR CAA 90 bp ATGGTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTGTGTATATGCCTTTTATCCAGTTGCAGACATaGACAATTTTGGCATTTCGG +
Preference number: 5 (lower is better)
Translates to: MVTKYLWCASPSSVYMPFIQLQT*TILAFR
Trigger: CCGAAATGCCAAAATTGTCAATGTCTGCAACTGGAT...AAAAGGCATATACACAGAACTGGGAGAAGCACACCAAAGATATTTTGTTACCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000092729.11
ENSMUST00000154906.8
CDS-3UTR CAA 90 bp GGCAAACCAGACAATACATTAGACATTACACTTACAACTCCTAACCTTTATGAGGAAGAGAGGATCCAGTaGCAGACATTGACAATTTTG +
Preference number: 5 (lower is better)
Translates to: GKPDNTLDITLTTPNLYEEERIQ*QTLTIL
Trigger: CAAAATTGTCAATGTCTGCAACTGGATCCTCTCTTC...CTCATAAAGGTTAGGAGTTGTAAGTGTAATGTCTAATGTATTGTCTGGTTTGCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063036.14
ENSMUST00000105611.8
ENSMUST00000129221.8
ENSMUST00000144264.8
CDS-3UTR CAA 90 bp TGCTCTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTTCGAAGAGAGGATCCAGTaGCAGACATTGACAATTTTG +
Preference number: 5 (lower is better)
Translates to: CSLWLHLPYGNKISLVCFEERIQ*QTLTIL
Trigger: CAAAATTGTCAATGTCTGCAACTGGATCCTCTCTTC...GAAGCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAGAGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CAA 90 bp GACCTCCTTAAGGATCTAAATCTTAGACTGGTATCAGGTGCTGTGTTTTTATATGAAGAGAGGATCCAGTaGCAGACATTGACAATTTTG +
Preference number: 5 (lower is better)
Translates to: DLLKDLNLRLVSGAVFLYEERIQ*QTLTIL
Trigger: CAAAATTGTCAATGTCTGCAACTGGATCCTCTCTTC...ATATAAAAACACAGCACCTGATACCAGTCTAAGATTTAGATCCTTAAGGAGGTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105602.8
CDS-3UTR CAA 90 bp AGGTACTCTGCTCTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGGAAGAGAGGATCCAGTaGCAGACATTGACAATTTTG +
Preference number: 5 (lower is better)
Translates to: RYSALYGYICHMVTKYLWEERIQ*QTLTIL
Trigger: CAAAATTGTCAATGTCTGCAACTGGATCCTCTCTTC...CCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAGAGCAGAGTACCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CAA 90 bp TATCTTGAGGGTACCCATTTCAGCACTATGAGAAGTTATCTCTTTCCTTTGAAGGTGGCAGTCTTCATTTaGGTATATCTTACAATCACA +
Preference number: 5 (lower is better)
Translates to: YLEGTHFSTMRSYLFPLKVAVFI*VYLTIT
Trigger: TGTGATTGTAAGATATACCAAAATGAAGACTGCCAC...CTTCAAAGGAAAGAGATAACTTCTCATAGTGCTGAAATGGGTACCCTCAAGATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000783.13
CDS-3UTR CAA 90 bp GGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTGTGGCAGTCTTCATTTaGGTATATCTTACAATCACA +
Preference number: 5 (lower is better)
Translates to: GYICHMVTKYLWCASPSSVAVFI*VYLTIT
Trigger: TGTGATTGTAAGATATACCAAAATGAAGACTGCCAC...AGAACTGGGAGAAGCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CAA 90 bp ATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTTCTCCCAGTTCTGTGTATTGTTGTAGTAGTCTATaGAGATCACGATCTTGCAGA +
Preference number: 5 (lower is better)
Translates to: ICHMVTKYLWCASPSSVYCCSSL*RSRSCR
Trigger: TCTGCAAGATCGTGATCTCAATAGACTACTACAACA...ATACACAGAACTGGGAGAAGCACACCAAAGATATTTTGTTACCATATGGCAAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CAA 90 bp GACCTCCTTAAGGATCTAAATCTTAGACTGGTATCAGGTGCTGTGTTTTTATATTGTTGTAGTAGTCTATaGAGATCACGATCTTGCAGA +
Preference number: 5 (lower is better)
Translates to: DLLKDLNLRLVSGAVFLYCCSSL*RSRSCR
Trigger: TCTGCAAGATCGTGATCTCAATAGACTACTACAACA...ATATAAAAACACAGCACCTGATACCAGTCTAAGATTTAGATCCTTAAGGAGGTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105602.8
CDS-3UTR CAA 90 bp CTTTGGTGTGCTTCTCCCAGTTCTGTGTATATGCCTTTTCAAAATAAATCTATTATCCAGTTGCAGACATaGACAATTTTGGCATTTCGG +
Preference number: 5 (lower is better)
Translates to: LWCASPSSVYMPFQNKSIIQLQT*TILAFR
Trigger: CCGAAATGCCAAAATTGTCAATGTCTGCAACTGGAT...AATAGATTTATTTTGAAAAGGCATATACACAGAACTGGGAGAAGCACACCAAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000092729.11
ENSMUST00000154906.8
CDS-3UTR CAA 90 bp TCTCTAGTAAGCTCTCTATTTGTTTTGTATTTCAGTGTTCAGGAAACCTTGTCTGAAGAGAGGATCCAGTaGCAGACATTGACAATTTTG +
Preference number: 5 (lower is better)
Translates to: SLVSSLFVLYFSVQETLSEERIQ*QTLTIL
Trigger: CAAAATTGTCAATGTCTGCAACTGGATCCTCTCTTC...AGACAAGGTTTCCTGAACACTGAAATACAAAACAAATAGAGAGCTTACTAGAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105604.8
CDS-3UTR CAA 90 bp TGCTCTCTATGGTTACATTTGCCATATGGTAACAAAATATCTTTGGTGTGCTTCGTGGCAGTCTTCATTTaGGTATATCTTACAATCACA +
Preference number: 5 (lower is better)
Translates to: CSLWLHLPYGNKISLVCFVAVFI*VYLTIT
Trigger: TGTGATTGTAAGATATACCAAAATGAAGACTGCCAC...GAAGCACACCAAAGATATTTTGTTACCATATGGCAAATGTAACCATAGAGAGCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092729.11
ENSMUST00000105605.8
ENSMUST00000154906.8
CDS-3UTR CAA 90 bp GACCTCCTTAAGGATCTAAATCTTAGACTGGTATCAGGTGCTGTGTTTTTATATGTGGCAGTCTTCATTTaGGTATATCTTACAATCACA +
Preference number: 5 (lower is better)
Translates to: DLLKDLNLRLVSGAVFLYVAVFI*VYLTIT
Trigger: TGTGATTGTAAGATATACCAAAATGAAGACTGCCAC...ATATAAAAACACAGCACCTGATACCAGTCTAAGATTTAGATCCTTAAGGAGGTC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105602.8
CDS-3UTR CAA 90 bp TCTCTAGTAAGCTCTCTATTTGTTTTGTATTTCAGTGTTCAGGAAACCTTGTCTGTGGCAGTCTTCATTTaGGTATATCTTACAATCACA +
Preference number: 5 (lower is better)
Translates to: SLVSSLFVLYFSVQETLSVAVFI*VYLTIT
Trigger: TGTGATTGTAAGATATACCAAAATGAAGACTGCCAC...AGACAAGGTTTCCTGAACACTGAAATACAAAACAAATAGAGAGCTTACTAGAGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105604.8
CDS CCA 72 bp CTGTTGGCTCCAGGCATGCATGCACATGGTGCCTGGTaGTTAGTTCGATCCACTGTATTAGCCGTGGAGGGG +
Preference number: 6 (lower is better)
Translates to: LLAPGMHAHGAW*LVRSTVLAVEG
Trigger: CCCCTCCACGGCTAATACAGTGGATCGAACTAACCACCAGGCACCATGTGCATGCATGCCTGGAGCCAACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129954.8
CDS TCA 72 bp GCAGGTTCTCCCAGTACCATGTGGGATGAGAGAACGTaGGGGTGCAATCTATGGACCCTTACAATCACATAC +
Preference number: 6 (lower is better)
Translates to: AGSPSTMWDERT*GCNLWTLTITY
Trigger: GTATGTGATTGTAAGGGTCCATAGATTGCACCCTCACGTTCTCTCATCCCACATGGTACTGGGAGAACCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
CDS TCA 72 bp CAGATTTTGAGCAGGTTCTCCCAGTACCATGTGGGATaGGAGAACGTGAGGGTGCAATCTATGGACCCTTAC +
Preference number: 6 (lower is better)
Translates to: QILSRFSQYHVG*ENVRVQSMDPY
Trigger: GTAAGGGTCCATAGATTGCACCCTCACGTTCTCTCATCCCACATGGTACTGGGAGAACCTGCTCAAAATCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105601.9
ENSMUST00000123861.8
CDS TCA 72 bp GCTCCCAACTGTCTTCAATTCCAGATCCAGAAGATCTaGTGCCTTCGTTTGACCTCTGTTGGCTCCAGGCAT +
Preference number: 6 (lower is better)
Translates to: APNCLQFQIQKI*CLRLTSVGSRH
Trigger: ATGCCTGGAGCCAACAGAGGTCAAACGAAGGCATCAGATCTTCTGGATCTGGAATTGAAGACAGTTGGGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129954.8
CDS CCA 72 bp TCATGGTGTTCATTGCAGCAACCAAAAGCAAGCTGGTaGTTAGTTCGATCCACTGTATTAGCCGTGGAGGGG +
Preference number: 6 (lower is better)
Translates to: SWCSLQQPKASW*LVRSTVLAVEG
Trigger: CCCCTCCACGGCTAATACAGTGGATCGAACTAACCACCAGCTTGCTTTTGGTTGCTGCAATGAACACCATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144264.8
CDS TCA 72 bp TTCAATTCCAGATCCAGAAGATCTGATGCCTTCGTTTaGCCTCTGTTGGCTCCAGGCATGCATGCACATGGT +
Preference number: 6 (lower is better)
Translates to: FNSRSRRSDAFV*PLLAPGMHAHG
Trigger: ACCATGTGCATGCATGCCTGGAGCCAACAGAGGTCAAACGAAGGCATCAGATCTTCTGGATCTGGAATTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129954.8
CDS CAA 72 bp AATGGACAGAGGGAGCCTGAGGTAACTCTTCCCCTCTaGATTTCCATCTCTCTGTCTGAGCTTTTGGAATGC +
Preference number: 6 (lower is better)
Translates to: NGQREPEVTLPL*ISISLSELLEC
Trigger: GCATTCCAAAAGCTCAGACAGAGAGATGGAAATCAAGAGGGGAAGAGTTACCTCAGGCTCCCTCTGTCCATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105597.8
CDS CCA 72 bp AATGTAGGCATAGCTCTCCACATTAAAAGCTTCTGGTaGTTAGTTCGATCCACTGTATTAGCCGTGGAGGGG +
Preference number: 6 (lower is better)
Translates to: NVGIALHIKSFW*LVRSTVLAVEG
Trigger: CCCCTCCACGGCTAATACAGTGGATCGAACTAACCACCAGAAGCTTTTAATGTGGAGAGCTATGCCTACATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154906.8
CDS CAA 72 bp CTTACAAGGACAAGCCCTGAGGTAACTCTTCCCCTCTaGATTTCCATCTCTCTGTCTGAGCTTTTGGAATGC +
Preference number: 6 (lower is better)
Translates to: LTRTSPEVTLPL*ISISLSELLEC
Trigger: GCATTCCAAAAGCTCAGACAGAGAGATGGAAATCAAGAGGGGAAGAGTTACCTCAGGGCTTGTCCTTGTAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
CDS CAA 72 bp CCTTGGAATGAGGTGTCTGAGGTAACTCTTCCCCTCTaGATTTCCATCTCTCTGTCTGAGCTTTTGGAATGC +
Preference number: 6 (lower is better)
Translates to: PWNEVSEVTLPL*ISISLSELLEC
Trigger: GCATTCCAAAAGCTCAGACAGAGAGATGGAAATCAAGAGGGGAAGAGTTACCTCAGACACCTCATTCCAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000150374.8
CDS CAA 90 bp CGTCAGTTTCTTACAAGGACAAGCCCTGAGGTAACTCTTCCCCTCTaGATTTCCATCTCTCTGTCTGAGCTTTTGGAATGCAGACTTAGA +
Preference number: 6 (lower is better)
Translates to: RQFLTRTSPEVTLPL*ISISLSELLECRLR
Trigger: TCTAAGTCTGCATTCCAAAAGCTCAGACAGAGAGATGGAAATCAAGAGGGGAAGAGTTACCTCAGGGCTTGTCCTTGTAAGAAACTGACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143875.2
CDS CAA 90 bp AATTTCCTTCCTTGGAATGAGGTGTCTGAGGTAACTCTTCCCCTCTaGATTTCCATCTCTCTGTCTGAGCTTTTGGAATGCAGACTTAGA +
Preference number: 6 (lower is better)
Translates to: NFLPWNEVSEVTLPL*ISISLSELLECRLR
Trigger: TCTAAGTCTGCATTCCAAAAGCTCAGACAGAGAGATGGAAATCAAGAGGGGAAGAGTTACCTCAGACACCTCATTCCAAGGAAGGAAATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000150374.8